Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 PRDM2 7799 hgsc.bcm.edu 37 1 14105142 14105142 + Missense_Mutation SNP T T A rs151133690 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PRDM2-116 NM_015866 exon8 c.T852A p.D284E AGATGATGATGAT . 67 13 60 0 T|0.997;A|0.003 0 0 0 0 0 FHAD1 114827 broad.mit.edu 37 1 15635136 15635136 + Missense_Mutation SNP A A C rs201389821 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FHAD1-69 NM_052929 exon7 c.A943C p.K315Q TACAGCAAGGTGC . 143 5 181 1 . 0 0 0 0 0 CLCNKA 1187 bcgsc.ca 37 1 16357147 16357147 + Missense_Mutation SNP C C T rs45568437 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CLCNKA-91 NM_004070 exon15 c.C1600T p.R534W CTGCCACGGATTC . 163 6 175 0 . 0 0 0 0 0 PINK1 65018 hgsc.bcm.edu 37 1 20960230 20960230 + Silent SNP C C T rs45530340 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PINK1-380 NM_032409 exon1 c.C189T p.L63L CGGGCTCCCTAAC . 5 4 0 0 C|0.868;T|0.132 0 0 0 0 0 AKR1A1 10327 broad.mit.edu 37 1 46032652 46032652 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AKR1A1-226 NM_006066 exon5 c.T316G p.Y106D CTGGAGTATCTGG . 78 3 104 2 . 0 0 0 0 0 SLC44A5 204962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75684227 75684227 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SLC44A5-95 NM_001130058 exon17 c.C1477T p.P493S CATCAGGTTTTTT . 171 50 177 0 . 0 0 0 0 0 DPYD 1806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 97564178 97564178 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DPYD-278 NM_000110 exon21 c.G2633A p.S878N CCAAAACTTGGCA . 64 31 60 0 . 0 0 0 0 0 KCND3 3752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 112329612 112329612 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KCND3-155 NM_004980 exon3 c.G1223A p.R408Q TAAATCCGGCTAA . 203 44 157 0 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158641930 158641930 + Silent SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SPTA1-142 NM_003126 exon11 c.T1407C p.H469H CTGACGATGACGC . 78 25 92 0 . 0 0 0 0 0 C1orf226 400793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 162353216 162353216 + Missense_Mutation SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . C1orf226-1 NM_001135240 exon3 c.A691G p.K231E AGAGGCAAAGTTC . 245 99 293 0 . 0 0 0 0 0 GPR161 23432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 168059902 168059902 + Silent SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GPR161-90 NM_001267609 exon5 c.G1164C p.L388L CAGGCCCAGGTCT . 69 28 79 0 . 0 0 0 0 0 CDC73 79577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 193111054 193111054 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CDC73-1009 NM_024529 exon7 c.C587A p.T196N GATCTACTATCAA . 213 80 337 0 . 0 0 0 0 0 ASPM 259266 bcgsc.ca 37 1 197112533 197112533 + Silent SNP G G A rs6677082 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ASPM-615 NM_001206846 exon3 c.C849T p.S283S ATTTACGGAATTA . 125 5 107 0 G|0.240;A|0.760 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216062269 216062269 + Silent SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . USH2A-115 NM_206933 exon41 c.A7722G p.L2574L CAAGTATAGACGG . 62 26 66 0 . 0 0 0 0 0 SKIDA1 387640 hgsc.bcm.edu 37 10 21805480 21805480 + Silent SNP T T C rs201836118 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_207371 exon4 c.A1272G p.E424E CTCCTCTTCCTCC . 46 4 64 0 . 0 0 0 0 0 SKIDA1 387640 hgsc.bcm.edu 37 10 21805486 21805486 + Silent SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_207371 exon4 c.G1266A p.E422E TTCCTCCTCCTCC . 46 4 66 0 . 0 0 0 0 0 RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 43606665 43606665 + Missense_Mutation SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RET-4507 NM_020630 exon7 c.T1274C p.V425A GGAAAGTCTGTGT . 100 28 79 0 . 0 0 0 0 0 NPFFR1 64106 hgsc.bcm.edu 37 10 72014863 72014863 + Silent SNP G G A rs60225321 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NPFFR1-22 NM_022146 exon4 c.C1143T p.S381S CAGCCCGGAGTCG . 11 11 1 0 G|0.929;A|0.071 0 0 0 0 0 ZNF503 84858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 77160944 77160944 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ZNF503-91 NM_032772 exon1 c.G234T p.K78N CAGCATCTTCAGC . 42 12 53 0 . 0 0 0 0 0 RBM20 282996 hgsc.bcm.edu 37 10 112404302 112404302 + Silent SNP G G A rs35141404 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_001134363 exon1 c.G90A p.R30R TGCCCGGGCGTCC . 13 12 1 0 G|0.808;A|0.192 0 0 0 0 0 PNLIPRP1 5407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118354303 118354303 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PNLIPRP1-154 NM_006229 exon5 c.C392A p.A131D CCCAAGCCACCTA . 123 45 111 0 . 0 0 0 0 0 FANK1 92565 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127693588 127693588 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FANK1-91 NM_145235 exon7 c.G675A p.V225V CAGTGTGATTGAG . 159 49 167 1 . 0 0 0 0 0 TH 7054 bcgsc.ca 37 11 2188688 2188688 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TH-90 NM_199292 exon7 c.C765A p.Y255X GGCGGTGTACTCC . 69 4 72 0 . 0 0 0 0 0 OR52N1 79473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5809714 5809714 + Silent SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OR52N1-69 NM_001001913 exon1 c.G333C p.G111G CTCCATCCCTGTG . 79 57 197 0 . 0 0 0 0 0 EML3 256364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62376216 62376216 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . EML3-91 NM_153265 exon8 c.G991A p.D331N TTCCATCCTTATC . 359 69 233 0 . 0 0 0 0 0 CCDC88B 283234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64111938 64111938 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CCDC88B-94 NM_032251 exon14 c.G1925C p.R642T GGTTGAGACAGGA . 157 50 76 0 . 0 0 0 0 0 DPP3 10072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66272099 66272099 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DPP3-46 NM_130443 exon17 c.G1895A p.G632E CCACAGGGGATGT . 52 21 51 0 . 0 0 0 0 0 RBM14 10432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66384417 66384417 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RBM14-92 NM_001198837 exon1 c.C226G p.L76V AGGCCTCTTAATA . 122 11 66 0 . 0 0 0 0 0 CORO1B 57175 hgsc.bcm.edu 37 11 67206163 67206163 + Silent SNP G G A rs148492786 by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CORO1B-108 NM_020441 exon10 c.C1323T p.S441S GCTGCCGCTGGGG . 12 8 0 0 G|0.997;A|0.003 0 0 0 0 0 OR2AT4 341152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 74800245 74800245 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OR2AT4-69 NM_001005285 exon1 c.G514C p.A172P TATATGCCATCTG . 103 43 144 0 . 0 0 0 0 0 MLL 4297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118344503 118344503 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MLL-1255 NM_001197104 exon3 c.G2629C p.D877H GAGAGAGACCGGG . 49 18 49 0 . 0 0 0 0 0 HMBS 3145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 118963200 118963200 + Silent SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HMBS-90 NM_000190 exon11 c.C738T p.R246R GCTTCGCTGCATC . 75 6 85 0 . 0 0 0 0 0 FLI1 2313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 128677078 128677078 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FLI1-1084 NM_002017 exon7 c.C725A p.P242H CAGGTCCTCCCCT . 76 30 88 0 . 0 0 0 0 0 IGSF9B 22997 hgsc.bcm.edu 37 11 133790390 133790390 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . IGSF9B-68 NM_014987 exon18 c.C3230A p.P1077H CCTCGGGGGAGGC . 27 14 7 0 . 0 0 0 0 0 CACNA1C 775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2614015 2614015 + Missense_Mutation SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CACNA1C-34 NM_001129831 exon8 c.A1121G p.D374G TCAATGATGCCGT . 245 47 180 0 . 0 0 0 0 0 CLEC4C 170482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7882323 7882323 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CLEC4C-93 NM_130441 exon7 c.G511T p.G171C GTTCACCTGAGTG . 127 25 92 0 . 0 0 0 0 0 A2ML1 144568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8995922 8995922 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . A2ML1-93 NM_144670 exon12 c.G1441A p.A481T GCCGATGCAAGCC . 151 35 83 0 . 0 0 0 0 0 KLRC4-KLRK1 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 10541381 10541381 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_001199805 exon7 c.G29C p.R10P CTGTGTCGAGACC . 87 7 58 0 . 0 0 0 0 0 BCAT1 586 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25002802 25002802 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . BCAT1-522 NM_001178093 exon6 c.A628C p.T210P TAAAGGTTCCACT . 99 37 97 1 . 0 0 0 0 0 ITPR2 3709 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 26809287 26809287 + Missense_Mutation SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ITPR2-542 NM_002223 exon19 c.T2387G p.V796G ACAGGCACCACGG . 137 40 129 1 . 0 0 0 0 0 KIAA1551 55196 broad.mit.edu 37 12 32135980 32135980 + Missense_Mutation SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_018169 exon4 c.A2091C p.R697S ACTCAGAACAAAC . 56 6 41 1 . 0 0 0 0 0 KIAA1551 55196 broad.mit.edu 37 12 32136103 32136103 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_018169 exon4 c.G2214C p.L738F AGCTTTGTCGATG . 69 3 58 0 . 0 0 0 0 0 ANO6 196527 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 45833607 45833607 + Silent SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ANO6-516 NM_001142679 exon20 c.C2676G p.L892L CTCCCTCTATTAT . 56 5 29 0 . 0 0 0 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu 37 12 49445206 49445206 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MLL2-612 NM_003482 exon10 c.C2260G p.P754A GCCGGGGGGACAG . 46 12 10 0 . 0 0 0 0 0 AQP2 359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50344855 50344855 + Missense_Mutation SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AQP2-92 NM_000486 exon1 c.T242A p.V81D GCCACGTCTCCGT . 131 37 40 0 . 0 0 0 0 0 CNPY2 10330 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 56705180 56705180 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CNPY2-68 NM_014255 exon4 c.G223C p.E75Q GGGCCTCTGAGCG . 89 26 85 0 . 0 0 0 0 0 NAB2 4665 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 57486328 57486329 + Frame_Shift_Del DEL GA GA - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NAB2-92 NM_005967 exon3 c.1055_1056del p.352_352del TAGCCCGAGAGAG . 189 52 168 0 . 0 0 0 0 0 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57577207 57577207 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LRP1-596 NM_002332 exon35 c.G5708T p.G1903V TCAGGGGAATTCC . 139 26 135 0 . 0 0 0 0 0 OTOGL 283310 broad.mit.edu;bcgsc.ca 37 12 80717566 80717566 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_173591 exon34 c.C4118G p.P1373R CTACACCCTGTTT . 301 9 164 0 . 0 0 0 0 0 SLC6A15 55117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 85257275 85257275 + Silent SNP A A T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SLC6A15-93 NM_182767 exon11 c.T1761A p.A587A AACACTAGCTATT . 328 153 191 0 . 0 0 0 0 0 EEA1 8411 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 93202827 93202827 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . EEA1-229 NM_003566 exon18 c.G2305A p.E769K TCAATTCTGTGGC . 62 17 65 1 . 0 0 0 0 0 AMDHD1 144193 hgsc.bcm.edu 37 12 96337225 96337225 + Silent SNP C C T rs1436121 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AMDHD1-90 NM_152435 exon1 c.C49T p.L17L GTGGTGCTGGTGT . 5 5 0 0 C|0.752;T|0.248 0 0 0 0 0 GPR133 283383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 131593280 131593280 + Missense_Mutation SNP A A T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GPR133-191 NM_198827 exon18 c.A1899T p.Q633H CTGCCAAGTGATG . 85 68 121 0 . 0 0 0 0 0 SUPT16H 11198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 21840079 21840079 + Missense_Mutation SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SUPT16H-90 NM_007192 exon3 c.A284G p.E95G GCATTCTCATTGC . 110 39 122 0 . 0 0 0 0 0 LRRC16B 90668 broad.mit.edu;bcgsc.ca 37 14 24524508 24524508 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LRRC16B-139 NM_138360 exon8 c.C594A p.H198Q CAGCCACTTGGAG . 193 9 149 0 . 0 0 0 0 0 CPNE6 9362 broad.mit.edu 37 14 24545620 24545620 + Silent SNP C C T rs139035718 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CPNE6-93 NM_006032 exon12 c.C1110T p.F370F CAACTTCGAGGTA . 106 4 88 0 C|1.000;T|0.000 0 0 0 0 0 AKAP6 9472 broad.mit.edu 37 14 33004880 33004880 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AKAP6-733 NM_004274 exon3 c.C445A p.L149I GTGCAGCTCCTCT . 210 8 107 1 . 0 0 0 0 0 MIPOL1 145282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 37736243 37736243 + Silent SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MIPOL1-91 NM_001195296 exon6 c.G120T p.R40R GCATCGGAAATCC . 208 68 178 0 . 0 0 0 0 0 FRMD6 122786 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 52187025 52187025 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FRMD6-524 NM_001267046 exon11 c.C1277G p.S426X GCAGCTCAATGAC . 128 37 146 2 . 0 0 0 0 0 TRMT5 57570 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 61446459 61446459 + Missense_Mutation SNP G G C rs188092813 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TRMT5-91 NM_020810 exon2 c.C157G p.Q53E TTCTTTGACCCAA . 116 7 74 0 G|0.999;C|0.000 0 0 0 0 0 YLPM1 56252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75265522 75265522 + Silent SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . YLPM1-71 NM_019589 exon5 c.A3522G p.G1174G ACCAGGAGATGGT . 115 31 97 0 . 0 0 0 0 0 IFT43 112752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 76452154 76452154 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . IFT43-90 NM_001102564 exon1 c.G25C p.E9Q TTGGACGAGGAGC . 109 27 100 0 . 0 0 0 0 0 ISM2 145501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 77951057 77951057 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ISM2-91 NM_199296 exon2 c.C347T p.A116V GTGTTGGCCAATC . 196 50 177 0 . 0 0 0 0 0 SNW1 22938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 78203387 78203387 + Missense_Mutation SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SNW1-187 NM_012245 exon6 c.A565T p.N189Y CAGAGTTGAATGC . 55 38 46 0 . 0 0 0 0 0 ZNF770 54989 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 35275401 35275401 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ZNF770-91 NM_014106 exon3 c.C235T p.L79L AAGGCAGACTATG . 37 19 48 1 . 0 0 0 0 0 DISP2 85455 hgsc.bcm.edu 37 15 40660192 40660192 + Silent SNP C C T rs8040755 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DISP2-92 NM_033510 exon8 c.C1879T p.L627L GCTGTGCTGGTGC . 8 8 1 0 C|0.941;T|0.059 0 0 0 0 0 AKAP13 11214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86286897 86286897 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AKAP13-258 NM_006738 exon36 c.C8245A p.H2749N CCTTTTCACATAC . 103 40 99 0 . 0 0 0 0 0 MAN2A2 4122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 91450636 91450636 + Silent SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MAN2A2-136 NM_006122 exon7 c.A1107G p.Q369Q CTGCCAATTTGAT . 61 28 73 0 . 0 0 0 0 0 PKD1 5310 broad.mit.edu 37 16 2154573 2154573 + Missense_Mutation SNP A A C rs201238819 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PKD1-91 NM_000296 exon22 c.T8087G p.L2696R AGGATGAGCATCA . 142 4 105 0 . 0 0 0 0 0 MMP25 64386 hgsc.bcm.edu 37 16 3108863 3108863 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MMP25-226 NM_022468 exon10 c.C1453A p.R485S TACTGGCGCTTCC . 69 4 86 0 . 0 0 0 0 0 PPL 5493 bcgsc.ca 37 16 4935146 4935146 + Silent SNP C C T rs1049206 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PPL-95 NM_002705 exon22 c.G3510A p.V1170V CTCCTGCACCACC . 100 5 128 0 C|0.673;T|0.327 0 0 0 0 0 TMC7 79905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19056276 19056276 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TMC7-93 NM_024847 exon10 c.G1408C p.D470H TCCTGTGATGATG . 67 27 126 0 . 0 0 0 0 0 SCNN1B 6338 broad.mit.edu 37 16 23360165 23360165 + Missense_Mutation SNP C C G rs35731153 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SCNN1B-157 NM_000336 exon2 c.C245G p.S82C GCGTCTCCCTCTC . 125 3 174 1 C|0.995;G|0.005 0 0 0 0 0 ALDOA 226 bcgsc.ca 37 16 30081476 30081476 + Silent SNP C C T rs77290575 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ALDOA-226 NM_001243177 exon10 c.C1200T p.S400S TCCGAGCGGTCAG . 110 5 127 0 C|0.994;T|0.006 0 0 0 0 0 CTRL 1506 ucsc.edu;bcgsc.ca 37 16 67965099 67965099 + Missense_Mutation SNP C C T rs140026167 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CTRL-90 NM_001907 exon2 c.G58A p.G20S GAATGCCGCAGCC . 147 37 95 0 C|0.994;T|0.006 0 0 0 0 0 RPL13 6137 hgsc.bcm.edu 37 16 89627671 89627671 + Silent SNP C C T rs174035 bycluster;byfrequency;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RPL13-90 NM_001243131 exon3 c.C141T p.A47A CATCGCCCCGCGC . 5 5 0 0 C|0.846;T|0.154 0 0 0 0 0 MC1R 4157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89985902 89985902 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_002386 exon1 c.G236A p.C79Y TCTGCTGCCTGGC . 123 57 113 0 . 0 0 0 0 0 FXR2 9513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7499311 7499311 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_004860 exon8 c.C662A p.T221K TTGCTTGTCTGAA . 99 40 103 0 . 0 0 0 0 0 RNF222 643904 hgsc.bcm.edu 37 17 8296383 8296383 + Missense_Mutation SNP C C T rs12601362 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RNF222-68 NM_001146684 exon3 c.G397A p.A133T GCTGGGCGCTCTG . 6 6 2 0 C|0.808;T|0.192 0 0 0 0 0 CDC27 996 hgsc.bcm.edu;bcgsc.ca 37 17 45234300 45234300 + Missense_Mutation SNP G G T rs199588670 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CDC27-291 NM_001114091 exon7 c.C821A p.A274D CTAAGAGCTGCTG . 38 6 32 0 . 0 0 0 0 0 SPHK1 8877 hgsc.bcm.edu;bcgsc.ca 37 17 74383432 74383434 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SPHK1-1107 NM_182965 exon6 c.1178_1180del p.393_394del CCATGGAGAAGGG . 163 0 231 1 . 0 0 0 0 0 MYADML2 255275 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79899111 79899111 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MYADML2-68 NM_001145113 exon3 c.C507T p.I169I CTGGACGATCTTG . 107 37 62 0 . 0 0 0 0 0 OSBPL1A 114876 ucsc.edu 37 18 21883679 21883679 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OSBPL1A-94 NM_080597 exon14 c.G1096T p.A366S ACTGTGCTTTCTG . 39 4 59 0 . 0 0 0 0 0 EPG5 57724 hgsc.bcm.edu;broad.mit.edu 37 18 43508849 43508849 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . EPG5-580 NM_020964 exon13 c.G2539A p.D847N CCTGGTCAATGGT . 43 4 49 0 . 0 0 0 0 0 POLI 11201 broad.mit.edu 37 18 51795958 51795960 + In_Frame_Del DEL CGA CGA - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . POLI-229 NM_007195 exon1 c.42_44del p.14_15del CGGCGGCGACGAC . 46 17 4 0 . 0 0 0 0 0 MADCAM1 8174 bcgsc.ca 37 19 501714 501714 + Missense_Mutation SNP C C A rs78071082 bycluster;byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MADCAM1-90 NM_130760 exon4 c.C713A p.P238Q CCTCCCCGGAGTC . 233 16 122 1 A|0.000;C|1.000;T|0.000 0 0 0 0 0 MYO1F 4542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8604874 8604874 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MYO1F-93 NM_012335 exon16 c.G1649A p.G550E TTGTCTCCATCCA . 69 12 52 0 . 0 0 0 0 0 CACNA1A 773 hgsc.bcm.edu 37 19 13319693 13319693 + Silent SNP A A G rs16051 bycluster;byfrequency;byhapmap;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CACNA1A-67 NM_001127221 exon46 c.T6660C p.H2220H CGGGGGATGGTGG . 8 6 0 0 A|0.360;G|0.640 0 0 0 0 0 UQCRFS1 7386 hgsc.bcm.edu 37 19 29704002 29704002 + Silent SNP T T C rs11666764 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . UQCRFS1-226 NM_006003 exon1 c.A24G p.S8S CGGGCCTGAGCGG . 7 7 0 0 T|0.072;C|0.928 0 0 0 0 0 UQCRFS1 7386 hgsc.bcm.edu 37 19 29704010 29704010 + Missense_Mutation SNP A A C rs8100724 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . UQCRFS1-226 NM_006003 exon1 c.T16G p.S6A AGCGGGATGCTAC . 7 7 0 0 A|0.065;C|0.935 0 0 0 0 0 RGS9BP 388531 hgsc.bcm.edu 37 19 33167455 33167455 + Missense_Mutation SNP G G T rs259290 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RGS9BP-90 NM_207391 exon1 c.G286T p.A96S CGACGCGCGCTGG . 6 6 0 0 G|0.540;T|0.460 0 0 0 0 0 ZNF296 162979 hgsc.bcm.edu 37 19 45579614 45579614 + Silent SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ZNF296-90 NM_145288 exon1 c.C18G p.A6A GCTGCCGGCCTTG . 9 8 1 0 . 0 0 0 0 0 SYMPK 8189 broad.mit.edu 37 19 46321272 46321272 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SYMPK-91 NM_004819 exon23 c.A3026C p.Y1009S CGGGGGTACATGG . 118 23 85 9 . 0 0 0 0 0 SPHK2 56848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49131974 49131974 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SPHK2-658 NM_020126 exon7 c.C909G p.N303K GCTCAACTGCTCA . 161 39 102 0 . 0 0 0 0 0 NTN5 126147 hgsc.bcm.edu 37 19 49164952 49164952 + Silent SNP A A G rs281392 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NTN5-136 NM_145807 exon7 c.T1452C p.S484S CCTGGGACTGGGT . 5 5 0 0 A|0.464;G|0.536 0 0 0 0 0 KCNA7 3743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49573389 49573389 + Silent SNP G G A rs145070146 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KCNA7-90 NM_031886 exon2 c.C1302T p.D434D CTCCCCGTCCACC . 192 39 145 0 G|1.000;A|0.000 0 0 0 0 0 KLK7 5650 hgsc.bcm.edu;bcgsc.ca 37 19 51485656 51485656 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KLK7-650 NM_001243126 exon2 c.C127A p.H43N TGCCATGGTGCCC . 65 4 63 0 . 0 0 0 0 0 LILRA1 11024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55105904 55105904 + Splice_Site SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LILRA1-93 NM_006863 exon3 c.35-2A>G . TCTTCCAGGGCTG . 188 27 111 0 . 0 0 0 0 0 LILRB1 10859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55144484 55144484 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LILRB1-137 NM_001081637 exon7 c.G976T p.V326F GACAGAGTCTCCC . 184 41 102 0 . 0 0 0 0 0 KIR2DL1 3802 broad.mit.edu;ucsc.edu 37 19 55286648 55286648 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KIR2DL1-90 NM_014218 exon4 c.G402T p.Q134H AGCCCAGCTGGGC . 60 9 48 0 . 0 0 0 0 0 ZNF671 79891 broad.mit.edu 37 19 58232936 58232936 + Missense_Mutation SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ZNF671-91 NM_024833 exon4 c.T518G p.L173W TCTTTCAATATTG . 238 4 178 0 . 0 0 0 0 0 ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24086377 24086377 + Silent SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ATAD2B-68 NM_001242338 exon12 c.C1353G p.A451A TGCTCTGGCAACC . 99 49 113 0 . 0 0 0 0 0 ALK 238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 29445209 29445209 + Splice_Site SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ALK-3833 NM_004304 exon23 c.3515+1G>A . GCTTTACCTGATG . 48 15 69 0 . 0 0 0 0 0 POLR1A 25885 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 86315734 86315734 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . POLR1A-93 NM_015425 exon6 c.G685A p.A229T CCATGGCTGGAAA . 125 37 95 1 . 0 0 0 0 0 GPAT2 150763 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 96697819 96697819 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GPAT2-90 NM_207328 exon3 c.G139C p.V47L GACCCACAAAGGG . 692 133 505 1 . 0 0 0 0 0 AFF3 3899 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 100210195 100210195 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AFF3-230 NM_001025108 exon14 c.C2003G p.S668C ACGGAGGAGCGCA . 92 18 60 1 . 0 0 0 0 0 IL18R1 8809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 103006523 103006523 + Missense_Mutation SNP G G T rs149204147 alternate_allele TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . IL18R1-93 NM_003855 exon8 c.G957T p.M319I AGACATGGCTGAT . 113 34 116 0 G|1.000;A|0.000 0 0 0 0 0 FBLN7 129804 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 112944994 112944994 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FBLN7-69 NM_153214 exon8 c.G1231C p.D411H GAGGTGGACGTCG . 88 30 56 1 . 0 0 0 0 0 CLASP1 23332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 122205879 122205879 + Missense_Mutation SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CLASP1-91 NM_001207051 exon18 c.A1714T p.S572C TAGGACTTCTTTT . 43 17 59 0 . 0 0 0 0 0 MYO7B 4648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128347750 128347750 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MYO7B-47 NM_001080527 exon16 c.C1938A p.N646K GACCAACTGCCAG . 168 38 141 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 179621430 179621430 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TTN-636 NM_001267550 exon46 c.C10773A p.S3591R TATTTTGCTCTCC . 96 7 63 0 . 0 0 0 0 0 PARD3B 117583 bcgsc.ca 37 2 206364737 206364737 + Silent SNP T T C rs10197347 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PARD3B-140 NM_152526 exon20 c.T2976C p.S992S GCCATCTGAGTAT . 110 5 155 1 T|0.587;C|0.413 0 0 0 0 0 CRYGB 1419 bcgsc.ca 37 2 209007559 209007559 + Missense_Mutation SNP T T G rs796287 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CRYGB-90 NM_005210 exon3 c.A331C p.I111L CAGAGATACAGTC . 151 6 195 0 G|0.655;N|0.000 0 0 0 0 0 PIKFYVE 200576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 209216103 209216103 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PIKFYVE-583 NM_015040 exon38 c.C5639G p.P1880R AAATGCCTCGTCT . 49 18 79 0 . 0 0 0 0 0 TMEM169 92691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 216960742 216960742 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TMEM169-69 NM_001142310 exon3 c.G56A p.G19D ACCAGGGCTCTCT . 72 32 63 0 . 0 0 0 0 0 EPB41L1 2036 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34776286 34776286 + Silent SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . EPB41L1-93 NM_001258329 exon10 c.C891T p.D297D CATCGACATCATG . 180 43 128 1 . 0 0 0 0 0 SLA2 84174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35242711 35242711 + Missense_Mutation SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SLA2-90 NM_032214 exon7 c.A662G p.D221G TACCTGTCCAGCT . 190 33 114 0 . 0 0 0 0 0 KIAA1755 85449 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 36869832 36869832 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KIAA1755-95 NM_001029864 exon3 c.C701A p.A234D CCCTTGGCCAAAC . 105 35 105 1 . 0 0 0 0 0 CTSA 5476 hgsc.bcm.edu;broad.mit.edu 37 20 44520258 44520258 + Frame_Shift_Del DEL G G - rs3080212 alternate_allele TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CTSA-91 NM_000308 exon2 c.105delG p.L35fs GCTGCTGCTGCTA . 71 19 8 0 -|0.668;CTG|0.332 0 0 0 0 0 CTSA 5476 hgsc.bcm.edu;broad.mit.edu 37 20 44520260 44520261 + Frame_Shift_Del DEL TG TG - rs79061377 bycluster;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CTSA-91 NM_000308 exon2 c.107_108del p.36_36del TGCTGCTGCTAGT . 71 18 9 0 . 0 0 0 0 0 ETS2 2114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 40188949 40188949 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ETS2-849 NM_001256295 exon7 c.G943T p.E315X AAGACAGAAGATC . 66 24 104 0 . 0 0 0 0 0 GNB1L 54584 broad.mit.edu 37 22 19808792 19808792 + Silent SNP G G A rs115309470 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GNB1L-290 NM_053004 exon3 c.C87T p.C29C TCCTTCGCAGAAG . 93 3 97 0 G|0.998;A|0.002 0 0 0 0 0 SCARF2 91179 hgsc.bcm.edu 37 22 20780296 20780296 + Missense_Mutation SNP G G A rs9680797 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SCARF2-341 NM_153334 exon11 c.C1982T p.P661L TCAGGTGGCGGCG . 8 8 3 0 G|0.977;A|0.023 0 0 0 0 0 NEFH 4744 bcgsc.ca 37 22 29886043 29886043 + Missense_Mutation SNP A A C rs165602 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NEFH-90 NM_021076 exon4 c.A2414C p.E805A TGAAGGAGGATGC . 81 5 79 0 A|0.871;C|0.129 0 0 0 0 0 TRIOBP 11078 hgsc.bcm.edu 37 22 38122462 38122462 + Missense_Mutation SNP A A G rs739138 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TRIOBP-136 NM_001039141 exon7 c.A3899G p.H1300R GCACCCACAGCCC . 7 5 0 0 A|0.354;G|0.646 0 0 0 0 0 TRIOBP 11078 broad.mit.edu 37 22 38131006 38131006 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TRIOBP-136 NM_001039141 exon9 c.C4663A p.P1555T AGGCGACCCGAGC . 59 12 46 2 . 0 0 0 0 0 MCHR1 2847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41075522 41075522 + Missense_Mutation SNP A A G rs147389509 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MCHR1-90 NM_005297 exon1 c.A73G p.T25A CAGGCTACGGAGG . 145 40 111 0 A|1.000;G|0.000 0 0 0 0 0 BRD1 23774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50198009 50198009 + Splice_Site SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . BRD1-91 NM_014577 exon3 c.1368-1G>T . TTTAACCTAAAAC . 150 55 189 0 . 0 0 0 0 0 CHKB 1120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 51019907 51019907 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CHKB-90 NM_005198 exon4 c.C523A p.H175N TGCCATGAAATTG . 79 42 105 0 . 0 0 0 0 0 SETMAR 6419 broad.mit.edu 37 3 4355141 4355141 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SETMAR-91 NM_006515 exon2 c.C716T p.S239L TTGACTCAATGGT . 206 5 227 0 . 0 0 0 0 0 KCNH8 131096 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 19554465 19554465 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KCNH8-524 NM_144633 exon13 c.G2083T p.E695X TAGTCAGAGCCCA . 141 51 171 1 . 0 0 0 0 0 SCN11A 11280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 38966970 38966970 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SCN11A-99 NM_014139 exon5 c.C648G p.I216M TAGTTTGATGGTG . 177 85 240 0 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 4 4 0 0 G|0.252;C|0.748 0 0 0 0 0 CHMP2B 25978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 87294944 87294944 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CHMP2B-229 NM_014043 exon3 c.G207A p.R69R TCTACGGAAACAG . 303 109 263 0 . 0 0 0 0 0 MYLK 4638 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 123419214 123419214 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MYLK-365 NM_053025 exon18 c.C3101A p.T1034N TTCAGGGTCTCAG . 151 33 144 2 . 0 0 0 0 0 SMC4 10051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 160148934 160148934 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SMC4-291 NM_005496 exon19 c.G3055C p.E1019Q AAACTTGAACAAA . 227 54 192 0 . 0 0 0 0 0 FXR1 8087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 180687983 180687983 + Silent SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FXR1-153 NM_001013438 exon15 c.T1440A p.L480L CTTACTTGATAAT . 232 26 224 0 . 0 0 0 0 0 DGKG 1608 hgsc.bcm.edu 37 3 185985480 185985480 + Silent SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DGKG-714 NM_001346 exon13 c.C1203A p.I401I CCGGGTGATGGGG . 63 4 61 0 . 0 0 0 0 0 ATP13A5 344905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 193032830 193032830 + Silent SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ATP13A5-144 NM_198505 exon18 c.T2089C p.L697L TTTTCAAGCGATT . 68 23 41 0 . 0 0 0 0 0 MUC4 4585 broad.mit.edu 37 3 195511814 195511814 + Missense_Mutation SNP T T C rs72499650 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MUC4-90 NM_018406 exon2 c.A6637G p.S2213G AAGGGCTGGTGAC . 214 7 202 2 T|0.500;C|0.500 0 0 0 0 0 PIGG 54872 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 517287 517289 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PIGG-92 NM_001127178 exon9 c.1654_1656del p.552_552del CTAGACCTTCTTA . 248 64 212 0 . 0 0 0 0 0 NMU 10874 hgsc.bcm.edu 37 4 56502307 56502307 + Missense_Mutation SNP G G T rs3828555 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NMU-650 NM_006681 exon1 c.C53A p.A18E GACGCCGCGGCCA . 8 8 0 0 G|0.853;T|0.147 0 0 0 0 0 DSPP 1834 bcgsc.ca 37 4 88537294 88537294 + Silent SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DSPP-90 NM_014208 exon5 c.T3480C p.S1160S CAGCAGTGACAGC . 569 157 782 16 . 0 0 0 0 0 SH3D19 152503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 152043252 152043252 + Missense_Mutation SNP C C G rs199694166 alternate_allele TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SH3D19-92 NM_001009555 exon21 c.G2364C p.Q788H GCTGATCTGTAGA . 49 19 77 0 C|0.999;A|0.001 0 0 0 0 0 DCHS2 54798 broad.mit.edu 37 4 155411939 155411939 + Missense_Mutation SNP A A C rs17373874 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DCHS2-94 NM_001142552 exon1 c.T569G p.V190G TGGGCAACTGGCA . 147 4 111 1 A|0.633;C|0.367 0 0 0 0 0 DCHS2 54798 broad.mit.edu 37 4 155411948 155411948 + Missense_Mutation SNP C C A rs184619033 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DCHS2-94 NM_001142552 exon1 c.G560T p.R187L GGCAGGCGGAAGG . 152 3 112 0 C|0.997;A|0.003 0 0 0 0 0 PDCD6 10016 broad.mit.edu 37 5 311455 311455 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PDCD6-290 NM_013232 exon5 c.G415C p.D139H AAGTTTGACAGGC . 157 5 176 0 . 0 0 0 0 0 RAD1 5810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 34913589 34913589 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RAD1-227 NM_002853 exon3 c.C293G p.S98X GGACTTGATCCAA . 232 52 195 0 . 0 0 0 0 0 EGFLAM 133584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38427121 38427121 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . EGFLAM-187 NM_001205301 exon14 c.G1821C p.L607F CACCTTGACCATT . 61 27 46 0 . 0 0 0 0 0 CARD6 84674 hgsc.bcm.edu;broad.mit.edu 37 5 40843294 40843294 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CARD6-230 NM_032587 exon2 c.324delG p.M108fs ATCTATGGGGGCA . 54 13 28 0 . 0 0 0 0 0 ELOVL7 79993 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 60067796 60067796 + Silent SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ELOVL7-90 NM_001104558 exon3 c.A189G p.E63E CTTGAGTTCAAAG . 219 61 176 0 . 0 0 0 0 0 MAP1B 4131 hgsc.bcm.edu;bcgsc.ca 37 5 71492991 71492991 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MAP1B-155 NM_005909 exon5 c.3809delC p.T1270fs AAAAGACCCCCCT . 104 35 99 1 . 0 0 0 0 0 MAP1B 4131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 71495181 71495181 + Missense_Mutation SNP C C A rs113459978 alternate_allele TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MAP1B-155 NM_005909 exon5 c.C5999A p.T2000K GCCACACACTTGG . 61 21 77 0 C|0.500;T|0.500 0 0 0 0 0 HOMER1 9456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 78671991 78671991 + Silent SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HOMER1-90 NM_004272 exon9 c.C906C p.L302L TTGTCCCTCCAGG . 88 20 93 0 . 0 0 0 0 0 HSD17B4 3295 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 118844896 118844896 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HSD17B4-92 NM_001199291 exon17 c.G1469A p.G490D TTGTTGGCTCTGG . 50 4 40 0 . 0 0 0 0 0 SOWAHA 134548 hgsc.bcm.edu 37 5 132149684 132149684 + Missense_Mutation SNP G G C rs40274 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_175873 exon1 c.G371C p.R124P TGGTCCGGGTGCC . 5 5 0 0 G|0.980;C|0.020 0 0 0 0 0 PCDHB6 56130 hgsc.bcm.edu 37 5 140531553 140531553 + Missense_Mutation SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PCDHB6-91 NM_018939 exon1 c.A1715G p.E572G GCACCGAGCTGGT . 17 7 2 0 . 0 0 0 0 0 PCDHB11 56125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140579540 140579540 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PCDHB11-96 NM_018931 exon1 c.C193T p.R65W GGGGCTCGGGTGG . 62 17 33 0 . 0 0 0 0 0 PCDHGA5 56110 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140746167 140746167 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PCDHGA5-35 NM_032054 exon1 c.T2270G p.V757G ACGAGGTCTCCCT . 169 48 168 4 . 0 0 0 0 0 COL23A1 91522 broad.mit.edu 37 5 177673297 177673297 + Silent SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . COL23A1-91 NM_173465 exon24 c.C1371A p.G457G CGGTGGGCCAACT . 112 4 110 0 . 0 0 0 0 0 FLT4 2324 ucsc.edu;bcgsc.ca 37 5 180048131 180048131 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FLT4-1490 NM_182925 exon14 c.C2142A p.D714E CCTCTCGTCTTTG . 290 71 200 3 . 0 0 0 0 0 FOXC1 2296 broad.mit.edu 37 6 1612237 1612237 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FOXC1-227 NM_001453 exon1 c.C1557A p.N519K CTTGAACAACTCT . 159 14 141 8 . 0 0 0 0 0 RREB1 6239 hgsc.bcm.edu 37 6 7230680 7230680 + Missense_Mutation SNP G G T rs9502564 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RREB1-144 NM_001003700 exon10 c.G2348T p.G783V GCGGGGGCCACAA . 8 7 0 0 G|0.546;T|0.454 0 0 0 0 0 NEDD9 4739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 11185653 11185653 + Silent SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NEDD9-226 NM_001142393 exon8 c.C2247A p.V749V GAGGATGACAAAC . 201 71 227 0 . 0 0 0 0 0 TRIM39 56658 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30303702 30303702 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TRIM39-161 NM_021253 exon5 c.G730C p.A244P CACTTGGCTGCCG . 123 15 98 1 . 0 0 0 0 0 FKBPL 63943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32096557 32096557 + Missense_Mutation SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FKBPL-204 NM_022110 exon2 c.A1001T p.K334M TGGTTCTTCCCCT . 213 40 130 0 . 0 0 0 0 0 GLP1R 2740 bcgsc.ca 37 6 39033549 39033549 + Missense_Mutation SNP T T A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GLP1R-659 NM_002062 exon4 c.T346A p.S116T GACAACTCCAGCC . 203 6 134 0 . 0 0 0 0 0 LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 40399886 40399886 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . LRFN2-93 NM_020737 exon2 c.G967C p.V323L GGGCTACCCAGTG . 75 6 43 0 . 0 0 0 0 0 PTCRA 171558 hgsc.bcm.edu 37 6 42893140 42893140 + Missense_Mutation SNP G G A rs111782749 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PTCRA-92 NM_001243168 exon4 c.G611A p.R204Q GCCTGCGAGCCCT . 41 24 0 0 G|0.995;A|0.005 0 0 0 0 0 KLHDC3 116138 broad.mit.edu;bcgsc.ca 37 6 42985302 42985302 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KLHDC3-91 NM_057161 exon3 c.G200A p.R67H CCATCCGTGGGCA . 258 13 203 1 . 0 0 0 0 0 PGK2 5232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49754247 49754247 + Silent SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PGK2-91 NM_138733 exon1 c.A654G p.A218A CTTGTCTGCCACT . 356 71 241 0 . 0 0 0 0 0 HMGCLL1 54511 broad.mit.edu 37 6 55300530 55300530 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HMGCLL1-94 NM_019036 exon10 c.G1043T p.G348V AAGTCACCAGCTT . 126 3 74 0 . 0 0 0 0 0 DST 667 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 56434803 56434805 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . DST-523 NM_015548 exon35 c.5858_5860del p.1953_1954del TTACAGCTTCTTT . 36 11 39 0 . 0 0 0 0 0 FILIP1 27145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 76022190 76022190 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FILIP1-94 NM_015687 exon5 c.C3358G p.P1120A CACCAGGCCGTGA . 435 83 302 0 . 0 0 0 0 0 HACE1 57531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 105219214 105219214 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HACE1-663 NM_020771 exon19 c.A2065C p.K689Q AATTTTTCGCATA . 89 36 69 0 . 0 0 0 0 0 RSPO3 84870 broad.mit.edu 37 6 127516969 127516969 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RSPO3-90 NM_032784 exon5 c.636delA p.G212fs TTCAGGAAAAAAA . 5 2 5 0 . 0 0 0 0 0 AHI1 54806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 135726087 135726087 + Splice_Site SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . AHI1-227 NM_001134830 exon21 c.2988+2T>G . CTACTTACTTTTG . 49 14 54 0 . 0 0 0 0 0 MAP3K4 4216 broad.mit.edu;bcgsc.ca 37 6 161527654 161527654 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MAP3K4-548 NM_005922 exon20 c.G3965A p.C1322Y AAGTTTGTGATAC . 176 8 255 0 . 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu 37 7 5410916 5410916 + Silent SNP G G C rs10215902 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TNRC18-46 NM_001080495 exon11 c.C3309G p.A1103A GGCGGCGGCCGTG . 4 4 1 0 G|0.900;C|0.100 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu 37 7 5427517 5427517 + Silent SNP G G A rs34693947 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TNRC18-46 NM_001080495 exon5 c.C1938T p.G646G GCCGCCGCCCGCT . 11 11 0 0 G|0.797;A|0.203 0 0 0 0 0 GARS 2617 hgsc.bcm.edu 37 7 30634630 30634630 + Silent SNP G G C rs2529438 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GARS-91 NM_002047 exon1 c.G93C p.L31L GCTCCTGCTCCGC . 9 9 0 0 G|0.889;C|0.111 0 0 0 0 0 NT5C3A 0 ucsc.edu;bcgsc.ca 37 7 33054388 33054388 + Missense_Mutation SNP T T C rs79747830 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_001002010 exon9 c.A965G p.D322G GATTCATCTTGTA . 34 8 45 0 T|0.969;C|0.031 0 0 0 0 0 OGDH 4967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44714133 44714133 + Silent SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OGDH-228 NM_002541 exon7 c.C912T p.Y304Y GGACTACGTGATC . 172 63 279 0 . 0 0 0 0 0 LRRD1 401387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 91793258 91793258 + Nonsense_Mutation SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_001161528 exon1 c.T1259G p.L420X TTTCTTAAATTGT . 61 31 49 0 . 0 0 0 0 0 ASB4 51666 broad.mit.edu;bcgsc.ca 37 7 95157438 95157438 + Silent SNP C C G rs142833028 alternate_allele TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ASB4-226 NM_016116 exon3 c.C801G p.L267L CGTGCTCATGCAC . 212 10 194 0 C|1.000;T|0.000 0 0 0 0 0 PARP12 64761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139737565 139737565 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PARP12-525 NM_022750 exon7 c.C1274T p.A425V AAGGTGGCTGCCT . 68 49 186 0 . 0 0 0 0 0 NOS3 4846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150698393 150698393 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . NOS3-1011 NM_001160111 exon10 c.G1308T p.K436N GCAGAAGGCCAGG . 19 12 45 0 . 0 0 0 0 0 MLL3 58508 bcgsc.ca 37 7 151932990 151932990 + Missense_Mutation SNP C C T rs76844681 TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MLL3-1398 NM_170606 exon16 c.G2681A p.R894Q GGTCTCCGCTTTC . 103 12 186 1 C|0.999;T|0.001 0 0 0 0 0 HTR5A 3361 broad.mit.edu 37 7 154862947 154862947 + Missense_Mutation SNP T T G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HTR5A-155 NM_024012 exon1 c.T338G p.L113R GGAGGCTGTGCCA . 17 2 8 0 . 0 0 0 0 0 SLC20A2 6575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 42294695 42294695 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SLC20A2-92 NM_001257181 exon8 c.C1335G p.I445M CGCCTCGATCTCC . 104 17 37 0 . 0 0 0 0 0 CRH 1392 hgsc.bcm.edu 37 8 67089425 67089425 + Silent SNP T T G rs6159 byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CRH-90 NM_000756 exon2 c.A288C p.G96G GCTGCCTCCGGCG . 18 4 3 0 T|0.642;G|0.358 0 0 0 0 0 ZNF704 619279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 81553604 81553604 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . ZNF704-90 NM_001033723 exon9 c.C1236T p.D412D CTCTCAGTCGAGG . 118 27 43 0 . 0 0 0 0 0 CHMP4C 92421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 82670423 82670423 + Missense_Mutation SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . CHMP4C-92 NM_152284 exon4 c.A530G p.N177S AATTAAATAAGAA . 177 39 114 0 . 0 0 0 0 0 MTSS1 9788 broad.mit.edu 37 8 125568471 125568471 + Splice_Site SNP A A C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MTSS1-91 NM_014751 exon13 c.1404+2T>G . AGCATCACCCTGG . 100 11 106 6 . 0 0 0 0 0 MROH5 389690 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 142506432 142506432 + RNA SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . . . . . TGTAGGCTTCCCC . 167 47 144 0 . 0 0 0 0 0 RHPN1 114822 broad.mit.edu 37 8 144459625 144459625 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RHPN1-67 NM_052924 exon4 c.G381T p.K127N GCTGAAGGTAGGT . 95 4 103 0 . 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144990528 144990528 + Silent SNP A A G rs7014582 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PLEC-141 NM_201380 exon32 c.T13872C p.A4624A GGAGCCAGCGGTA . 10 5 1 0 A|0.536;G|0.464 0 0 0 0 0 MPDZ 8777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 13192144 13192144 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MPDZ-231 NM_003829 exon15 c.G1954T p.E652X TTAGCTCAATATC . 110 21 72 0 . 0 0 0 0 0 SH3GL2 6456 broad.mit.edu;bcgsc.ca 37 9 17795615 17795615 + Silent SNP T T C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SH3GL2-91 NM_003026 exon9 c.T933C p.F311F GGGATTTAAAGAG . 309 12 227 0 . 0 0 0 0 0 IFNA8 3445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 21409580 21409580 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . IFNA8-90 NM_002170 exon1 c.G405A p.M135I CCTGATGTACGAG . 215 47 110 0 . 0 0 0 0 0 PRSS3 5646 broad.mit.edu 37 9 33794840 33794840 + Silent SNP G G A rs10117993 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PRSS3-90 NM_001197097 exon2 c.G51A p.A17A GAGTGCGCCATTG . 184 7 138 2 G|0.995;A|0.005 0 0 0 0 0 FAM205A 259308 broad.mit.edu 37 9 34725742 34725742 + Missense_Mutation SNP T T C rs62547039 byfrequency TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . . NM_001141917 exon4 c.A1495G p.M499V GAGACATCCAGTT . 105 4 71 1 T|0.296;C|0.704 0 0 0 0 0 PIGO 84720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35092629 35092629 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PIGO-290 NM_001201484 exon8 c.G1255A p.A419T GTGTCGCCTCAGC . 81 21 88 0 . 0 0 0 0 0 PCSK5 5125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 78910311 78910311 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PCSK5-93 NM_001190482 exon26 c.G3306A p.E1102E TGAAGAGGGCTTC . 266 82 267 0 . 0 0 0 0 0 SHC3 53358 hgsc.bcm.edu 37 9 91793225 91793225 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SHC3-415 NM_016848 exon1 c.G151A p.E51K GCGCCTCGCCGGA . 19 14 2 0 . 0 0 0 0 0 OR1K1 392392 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 125562456 125562458 + In_Frame_Del DEL ACA ACA - novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 ACA ACA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OR1K1-69 NM_080859 exon1 c.55_57del p.19_19del GGACTGACAACAA . 196 42 125 0 . 0 0 0 0 0 PRDM12 59335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 133556750 133556750 + Silent SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PRDM12-90 NM_021619 exon5 c.G798A p.T266T CCACACGCTGGAC . 122 27 27 0 . 0 0 0 0 0 SLC2A6 11182 broad.mit.edu;bcgsc.ca 37 9 136337148 136337148 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . SLC2A6-90 NM_017585 exon10 c.C1519T p.R507C CCTAGCGCAAGAA . 135 6 65 0 . 0 0 0 0 0 PAEP 5047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138453660 138453660 + Silent SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PAEP-68 NM_002571 exon1 c.C13T p.L5L TGCCTCCTGCTCA . 205 45 115 0 . 0 0 0 0 0 WWC3 55841 broad.mit.edu 37 X 10035510 10035510 + Missense_Mutation SNP A A G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . WWC3-134 NM_015691 exon3 c.A200G p.D67G AGGATGACAGCCG . 350 7 317 0 . 0 0 0 0 0 MAP3K15 389840 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 19425347 19425347 + Missense_Mutation SNP A A T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . MAP3K15-335 NM_001001671 exon13 c.T1803A p.D601E AAAGTCATCAGAA . 251 21 164 0 . 0 0 0 0 0 PHEX 5251 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 22117127 22117127 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PHEX-132 NM_000444 exon9 c.G937C p.D313H CAGTTCGACTGGC . 76 21 59 0 . 0 0 0 0 0 KLHL15 80311 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 24006591 24006591 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KLHL15-131 NM_030624 exon4 c.G1262T p.G421V ACTGTCCCCTCAT . 272 72 228 1 . 0 0 0 0 0 FAM47C 442444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 37026574 37026574 + Missense_Mutation SNP G G A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FAM47C-111 NM_001013736 exon1 c.G91A p.A31T TACTTCGCGAAGC . 423 28 368 0 . 0 0 0 0 0 FAM47C 442444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 37028029 37028029 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . FAM47C-111 NM_001013736 exon1 c.G1546C p.E516Q CCTTCTGAGACTG . 80 29 83 0 . 0 0 0 0 0 GPR82 27197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 41586498 41586498 + Missense_Mutation SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . GPR82-110 NM_080817 exon3 c.C219G p.I73M GAGTATCTATTTC . 130 41 120 0 . 0 0 0 0 0 PORCN 64840 broad.mit.edu 37 X 48368343 48368343 + Silent SNP C C G novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PORCN-133 NM_203475 exon1 c.C135G p.L45L GAGGCTCGGTAAG . 108 12 116 7 . 0 0 0 0 0 IQSEC2 23096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53284064 53284064 + Missense_Mutation SNP G G C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . IQSEC2-178 NM_001111125 exon4 c.C1049G p.A350G CTGGCAGCCCTGC . 182 45 144 0 . 0 0 0 0 0 HUWE1 10075 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53616611 53616611 + Missense_Mutation SNP C C T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . HUWE1-280 NM_031407 exon36 c.G4357A p.E1453K GCAGCTCATCAAG . 225 56 217 1 . 0 0 0 0 0 COL4A6 1288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107447550 107447550 + Missense_Mutation SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . COL4A6-199 NM_001847 exon12 c.G783T p.K261N CACTACCTTGGAT . 35 16 49 0 . 0 0 0 0 0 OCRL 4952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 128722897 128722897 + Silent SNP C C A novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OCRL-206 NM_000276 exon22 c.C2376A p.L792L ACTGCTCATTTTC . 62 8 73 0 . 0 0 0 0 0 APLN 8862 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128782651 128782651 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . APLN-108 NM_017413 exon2 c.C186A p.F62L GCGGCGGAATTTC . 277 92 297 3 . 0 0 0 0 0 PHF6 84295 broad.mit.edu;bcgsc.ca 37 X 133547878 133547878 + Missense_Mutation SNP G G T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PHF6-131 NM_032335 exon7 c.G614T p.S205I GAAGCAGCCCTAG . 312 8 336 0 . 0 0 0 0 0 TCHH 7062 broad.mit.edu 37 1 152084175 152084176 + In_Frame_Ins INS - - TGCTGCTCGCGCCTCTCC novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . TCHH-72 NM_007113 exon3 c.1518_1519insGGAGAGGCGCGAGCAGCA p.Q506delinsQERREQQ CCTTAGTTGCTGC . 70 16 44 0 . 0 0 0 0 0 KRTAP5-5 439915 hgsc.bcm.edu;broad.mit.edu 37 11 1651199 1651200 + In_Frame_Ins INS - - GGCCGTGGCTCC novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . KRTAP5-5-23 NM_001001480 exon1 c.129_130insGGCCGTGGCTCC p.G43delinsGGRGS CTGTGGAGGCTGT . 28 20 5 0 . 0 0 0 0 0 POLG 5428 broad.mit.edu 37 15 89876827 89876828 + In_Frame_Ins INS - - TGC rs41550117 bycluster TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . POLG-228 NM_001126131 exon2 c.159_160insGCA p.Q53delinsQQ CTGCTGTTGCTGC . 15 5 11 0 . 0 0 0 0 0 RAX 30062 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 56939705 56939706 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . RAX-90 NM_013435 exon2 c.431_432insA p.T144fs TACGTGGTGAAAG . 151 55 152 0 . 0 0 0 0 0 PANX2 56666 broad.mit.edu 37 22 50617594 50617595 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . PANX2-131 NM_052839 exon3 c.1922_1923insC p.G641fs ACGGGGGCCCCCG . 89 15 29 0 . 0 0 0 0 0 OR6C1 390321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 55714972 55714973 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . OR6C1-69 NM_001005182 exon1 c.G590T p.G197L TGATGGGATTTTC . 130 10 118 0 . 0 0 0 0 0 BACH2 60468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90660029 90660030 + Missense_Mutation DNP GC GC AT novel TCGA-OR-A5J4-01A-11D-A29I-10 TCGA-OR-A5J4-10A-01D-A29L-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 4d76daa9-a336-435c-aeef-47344d97ac5b 75574849-0529-454a-92ea-2580f79cc974 . BACH2-231 NM_021813 exon7 c.G1795A p.A599I TGTCTGCTTCCGA . 241 0 98 0 . 0 0 0 0 0