Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ACAP3	116983	hgsc.bcm.edu	37	1	1229971	1229971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ACAP3-90	NM_030649	exon21	c.C1950A	p.D650E	GTCCCCGTCTGCC	.	11	7	0	0	.	2	0	2	0	0
PLEKHG5	57449	hgsc.bcm.edu	37	1	6529191	6529191	+	Silent	SNP	C	C	T	rs149732859	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLEKHG5-652	NM_001265592	exon20	c.G2397A	p.E799E	CTCCTCCTCCTCC	.	62	5	36	0	C|0.981;T|0.019	0	0	0	0	0
KLHDC7A	127707	hgsc.bcm.edu	37	1	18809305	18809305	+	Silent	SNP	C	C	T	rs114671250	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KLHDC7A-93	NM_152375	exon1	c.C1830T	p.D610D	CCTGGACCGCTGG	.	50	23	3	0	C|0.985;T|0.015	0	0	0	0	0
AHDC1	27245	hgsc.bcm.edu	37	1	27875518	27875520	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHDC1-90	NM_001029882	exon6	c.3107_3109del	p.1036_1037del	TGAAGAAGGAGGC	.	49	17	6	2	.	0	0	0	0	0
MACF1	23499	broad.mit.edu	37	1	39852989	39852989	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MACF1-165	NM_012090	exon54	c.A8289G	p.K2763K	TGCAAAATTGGAG	.	118	4	110	0	.	0	0	0	0	0
TIE1	7075	bcgsc.ca	37	1	43784956	43784956	+	Silent	SNP	A	A	G	rs1199039	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TIE1-1404	NM_005424	exon18	c.A2973G	p.L991L	GAACCTAGCCTCC	.	219	6	214	2	A|0.697;G|0.303	46	46	0	0	0
OMA1	115209	broad.mit.edu;bcgsc.ca	37	1	59004877	59004877	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OMA1-131	NM_145243	exon2	c.A90G	p.T30T	TGCTAATGTGTTA	.	47	6	66	0	.	7	6	1	0	0
SORT1	6272	bcgsc.ca	37	1	109884775	109884775	+	Silent	SNP	T	T	G	rs2228604	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SORT1-91	NM_002959	exon9	c.A969C	p.T323T	TCTTGTTGTATCC	.	162	9	107	0	T|0.284;G|0.716	0	0	0	0	0
LCE1E	353135	ucsc.edu;bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	130	28	78	3	A|0.995;G|0.005	0	0	0	0	0
ARHGAP30	257106	bcgsc.ca	37	1	161017556	161017556	+	Silent	SNP	C	C	T	rs2774279	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ARHGAP30-25	NM_001025598	exon12	c.G3255A	p.R1085R	ATATGACCTGCGC	.	93	5	95	0	C|0.752;T|0.248	5	5	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	6	0	0	T|0.229;C|0.771	0	0	0	0	0
CHIT1	1118	bcgsc.ca	37	1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C	rs201682373	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CHIT1-90	NM_003465	exon10	c.C1076G	p.A359G	TCCAGTGCCCAGA	.	68	6	46	0	G|0.988;C|0.012	0	0	0	0	0
CHIT1	1118	bcgsc.ca	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CHIT1-90	NM_003465	exon10	c.G1073A	p.W358X	AGTGCCCAGACCA	.	69	8	45	0	C|0.989;T|0.011	0	0	0	0	0
RASSF5	83593	hgsc.bcm.edu	37	1	206681323	206681323	+	Silent	SNP	C	C	T	rs77707044	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RASSF5-660	NM_182663	exon1	c.C388T	p.L130L	TTGGTGCTGCCGG	.	33	24	0	0	C|0.970;T|0.030	0	0	0	0	0
CENPF	1063	broad.mit.edu	37	1	214818291	214818291	+	Missense_Mutation	SNP	G	G	A	rs143725699	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CENPF-567	NM_016343	exon13	c.G5378A	p.R1793H	AGGACCGTGACAG	.	111	4	102	0	G|0.998;A|0.002	0	0	0	0	0
C1orf229	388759	hgsc.bcm.edu	37	1	247275218	247275218	+	Silent	SNP	C	C	G	rs141557009		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C1orf229-90	NM_207401	exon1	c.G309C	p.A103A	CGAGGCCGCAGCG	.	8	5	0	0	C|0.971;G|0.029	0	0	0	0	0
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248039251	248039251	+	Silent	SNP	C	C	T	rs201527424	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TRIM58-96	NM_015431	exon6	c.C921T	p.T307T	CTTGACCGCCGAC	.	126	35	94	0	C|1.000;G|0.000	0	0	0	0	0
OR2M5	127059	broad.mit.edu	37	1	248308612	248308612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR2M5-71	NM_001004690	exon1	c.C163T	p.L55F	ACCCAGCTCCACA	.	333	7	280	0	.	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55582281	55582281	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDH15-193	NM_001142763	exon35	c.C5226T	p.A1742A	TGGATGGGCAAAA	.	45	10	49	0	.	0	0	0	0	0
WDR11	55717	broad.mit.edu;ucsc.edu	37	10	122643301	122643301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	WDR11-226	NM_018117	exon14	c.G1749T	p.L583F	GTATTTGGCAGTC	.	47	4	52	0	.	0	0	0	0	0
FGFR2	2263	broad.mit.edu	37	10	123239112	123239112	+	Silent	SNP	G	G	A	rs1047057	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	FGFR2-2607	NM_001144915	exon17	c.C2107T	p.L703L	CAGCCAGTACGCA	.	103	3	92	0	G|0.609;A|0.391	4	4	0	0	0
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129839226	129839226	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PTPRE-227	NM_006504	exon3	c.C81T	p.A27A	CACTGCCGACAGC	.	168	9	183	0	.	0	0	0	0	0
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1778638	1778638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CTSD-90	NM_001909	exon5	c.C620T	p.S207F	TTGACGGAGATGC	.	251	25	146	0	.	1982	1770	210	0	2
OR56B1	387748	bcgsc.ca	37	11	5758051	5758051	+	Missense_Mutation	SNP	G	G	A	rs75758940	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR56B1-69	NM_001005180	exon1	c.G305A	p.S102N	TTATTAGCCTCCC	.	127	7	120	1	G|0.992;A|0.008	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	6	0	0	C|0.748;A|0.252	0	0	0	0	0
AMBRA1	55626	hgsc.bcm.edu	37	11	46419411	46419411	+	Silent	SNP	G	G	A	rs12295608	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AMBRA1-136	NM_001267782	exon20	c.C3495T	p.A1165A	CACCACGGCTGTC	.	25	5	1	0	G|0.923;A|0.077	47	37	10	0	0
OR8H2	390151	broad.mit.edu	37	11	55873285	55873285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR8H2-70	NM_001005200	exon1	c.T767C	p.I256T	CTCTGATTTTTAC	.	78	3	77	0	.	0	0	0	0	0
TMEM223	79064	hgsc.bcm.edu	37	11	62559437	62559437	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001080501	exon1	c.G30C	p.T10T	CAGCCCCGTGGGC	.	16	9	1	0	.	29	10	19	0	0
PPP2R1B	5519	broad.mit.edu;bcgsc.ca	37	11	111626120	111626120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP2R1B-658	NM_001177562	exon6	c.T742C	p.S248P	CCTGAGACAATAA	.	124	5	71	0	.	9	8	1	0	0
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3805999	3805999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EFCAB4B-92	NM_001144958	exon4	c.A167T	p.Q56L	AACTCCTGTGCCT	.	138	33	103	0	.	0	0	0	0	0
C1RL	51279	broad.mit.edu;bcgsc.ca	37	12	7260847	7260847	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C1RL-91	NM_016546	exon2	c.A300G	p.T100T	GCTCACTGTGACA	.	70	5	48	1	.	4	4	0	0	0
CLEC4E	26253	bcgsc.ca	37	12	8691875	8691875	+	Missense_Mutation	SNP	T	T	C	rs79940141	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLEC4E-90	NM_014358	exon3	c.A158G	p.D53G	TTCTCATCACAGG	.	154	7	106	0	T|0.991;C|0.009	5	5	0	0	0
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	BCAT1-522	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	88	15	66	0	.	2	2	0	0	0
KRT6B	3854	bcgsc.ca	37	12	52841765	52841765	+	Silent	SNP	G	G	A	rs388626	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KRT6B-92	NM_005555	exon7	c.C1221T	p.A407A	AATGGCGGCCTGT	.	257	8	179	2	G|0.488;A|0.512	0	0	0	0	0
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54854183	54854183	+	Silent	SNP	C	C	A	rs148431190	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GTSF1-90	NM_144594	exon7	c.G465T	p.P155P	AACATACGGCAGA	.	146	29	83	0	C|1.000;T|0.000	0	0	0	0	0
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	76447086	76447086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NAP1L1-92	NM_004537	exon10	c.C815G	p.T272S	TTAATAGTTTTCA	.	189	11	135	0	.	486	428	58	0	0
CEP290	80184	ucsc.edu;bcgsc.ca	37	12	88478595	88478595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CEP290-96	NM_025114	exon35	c.C4472A	p.A1491E	TGTTCTGCTAACC	.	21	4	25	0	.	1	1	0	0	0
ANKS1B	56899	bcgsc.ca	37	12	99640557	99640557	+	Silent	SNP	T	T	C	rs1552759	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_152788	exon13	c.A1842G	p.P614P	ACAGGCTGGAGAG	.	72	4	46	0	T|0.380;C|0.620	0	0	0	0	0
RPH3A	22895	ucsc.edu;bcgsc.ca	37	12	113285539	113285539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RPH3A-519	NM_001143854	exon5	c.C122A	p.P41H	GTCAGCCTGACAG	.	328	49	245	2	.	0	0	0	0	0
PITPNM2	57605	hgsc.bcm.edu	37	12	123480124	123480132	+	In_Frame_Del	DEL	GCCACCACC	GCCACCACC	-	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	GCCACCACC	GCCACCACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PITPNM2-228	NM_020845	exon13	c.1858_1866del	p.620_622del	ACTGCTGCCACCA	.	86	32	6	0	.	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NCOR2-229	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	52	4	28	0	.	21	5	16	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EP400-520	NM_015409	exon47	c.G8175A	p.Q2725Q	GCAGCAGCAACAA	.	213	7	97	1	.	0	0	0	0	0
OXGR1	27199	bcgsc.ca	37	13	97639827	97639827	+	Silent	SNP	T	T	G	rs9300380	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OXGR1-70	NM_080818	exon4	c.A187C	p.R63R	AAGGTCTCATTTT	.	182	8	185	0	T|0.939;G|0.061	0	0	0	0	0
CARS2	79587	ucsc.edu	37	13	111340101	111340101	+	Missense_Mutation	SNP	T	T	C	rs72661692	byfrequency;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CARS2-90	NM_024537	exon5	c.A538G	p.I180V	GAGCAATGATTCC	.	84	13	75	1	T|0.929;A|0.071	48	36	12	0	0
C14orf39	317761	bcgsc.ca	37	14	60903757	60903757	+	Missense_Mutation	SNP	G	G	A	rs1254319	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C14orf39-94	NM_174978	exon18	c.C1570T	p.L524F	TCTCAAGTAAGTT	.	78	7	108	0	G|0.588;A|0.412	0	0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412335	105412335	+	Silent	SNP	C	C	T	rs202104959	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHNAK2-47	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	59	9	139	0	C|0.963;T|0.037	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105417098	105417098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHNAK2-47	NM_138420	exon7	c.G4690A	p.G1564S	CAGGGCCCTCTGG	.	159	48	157	0	.	0	0	0	0	0
GABRG3	2567	hgsc.bcm.edu	37	15	27216691	27216691	+	Silent	SNP	G	G	A	rs28399525	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001270873	exon1	c.G9A	p.P3P	GGCCCCGAAGCTG	.	9	5	0	0	G|0.972;A|0.028	0	0	0	0	0
FAM81A	145773	bcgsc.ca	37	15	59806609	59806609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	FAM81A-91	NM_152450	exon7	c.G772T	p.V258F	TTGATTGTTAAGG	.	65	6	52	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0
MCTP2	55784	bcgsc.ca	37	15	94945719	94945719	+	Missense_Mutation	SNP	G	G	T	rs7178698	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MCTP2-93	NM_001159644	exon10	c.G854T	p.R285L	AGCACCGCAAAGA	.	135	5	124	0	G|0.358;T|0.642	0	0	0	0	0
HBQ1	3049	hgsc.bcm.edu	37	16	230817	230817	+	Missense_Mutation	SNP	C	C	T	rs80294025	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HBQ1-90	NM_005331	exon2	c.C248T	p.A83V	TGTCCGCGCTGAG	.	7	5	0	0	C|0.988;T|0.012	0	0	0	0	0
SLX4	84464	hgsc.bcm.edu	37	16	3646276	3646276	+	Missense_Mutation	SNP	G	G	A	rs59706816		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SLX4-94	NM_032444	exon8	c.C1802T	p.S601L	GAAGGCGACGGGC	.	52	20	0	0	G|0.996;A|0.004	0	0	0	0	0
TMC7	79905	bcgsc.ca	37	16	19067933	19067933	+	Silent	SNP	G	G	A	rs17854511	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMC7-93	NM_024847	exon14	c.G1941A	p.T647T	CAAGACGGTGAGC	.	288	10	272	2	G|0.511;A|0.489	0	0	0	0	0
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81232405	81232405	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PKD1L2-92	NM_001076780	exon7	c.T1405C	p.L469L	TGATCAATAGGTC	.	174	50	147	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	4	4	0	0	T|0.657;C|0.343	0	0	0	0	0
USP43	124739	hgsc.bcm.edu	37	17	9549360	9549360	+	Silent	SNP	T	T	G	rs114382285	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	USP43-637	NM_001267576	exon1	c.T411G	p.A137A	GGCGGCTCCGGGC	.	8	5	2	0	T|0.919;G|0.081	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298304	29298304	+	Missense_Mutation	SNP	C	C	G	rs7225888	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RNF135-227	NM_197939	exon1	c.C213G	p.H71Q	GCCGCACCTGCGG	.	10	4	0	0	C|0.810;G|0.190	3	0	3	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	229	8	67	0	.	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_031960	exon1	c.T283A	p.C95S	AGATGCAGCAGCT	.	142	25	16	1	A|0.500;T|0.500	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu;ucsc.edu	37	17	39296254	39296254	+	Silent	SNP	C	C	T	rs72483263		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_030976	exon1	c.G486A	p.P162P	GCAGCACGGGCGG	.	257	72	28	1	C|0.500;T|0.500	0	0	0	0	0
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42153148	42153148	+	Missense_Mutation	SNP	G	G	A	rs200478425	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	G6PC3-91	NM_138387	exon6	c.G778A	p.G260S	GCCCTGGGCCTGG	.	80	18	51	0	.	139	100	39	0	0
EPB41L3	23136	bcgsc.ca	37	18	5410574	5410574	+	Silent	SNP	A	A	G	rs3817466	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPB41L3-95	NM_012307	exon14	c.T2112C	p.T704T	AGTGGCAGTGGTC	.	138	6	155	0	G|0.754;N|0.001	0	0	0	0	0
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu	37	18	22807146	22807146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF521-275	NM_015461	exon4	c.C736G	p.Q246E	ACTTCTGAGTGTC	.	108	6	136	0	.	1	1	0	0	0
TMPRSS9	360200	hgsc.bcm.edu	37	19	2425145	2425145	+	Silent	SNP	C	C	T	rs77360217	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMPRSS9-91	NM_182973	exon15	c.C2761T	p.L921L	CTGGAGCTGGCGG	.	15	12	0	0	C|0.956;T|0.044	12	7	5	0	0
MFSD12	126321	hgsc.bcm.edu	37	19	3547955	3547955	+	Missense_Mutation	SNP	C	C	T	rs10414812	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001042680	exon4	c.G728A	p.R243H	GGCCGGCGCCTCT	.	6	5	0	0	C|0.947;T|0.053	30	18	12	0	0
PNPLA6	10908	hgsc.bcm.edu	37	19	7615942	7615942	+	Silent	SNP	G	G	A	rs113335442		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PNPLA6-47	NM_001166111	exon19	c.G2160A	p.L720L	GGAGCTGGCCAAG	.	67	32	2	0	G|0.992;A|0.008	27	15	12	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	11	6	0	0	T|0.852;C|0.148	39	21	17	0	1
GADD45GIP1	90480	hgsc.bcm.edu	37	19	13067746	13067746	+	Missense_Mutation	SNP	G	G	C	rs137887501	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GADD45GIP1-92	NM_052850	exon1	c.C281G	p.P94R	AGGCTCGGGTACC	.	37	19	4	0	G|0.995;C|0.005	189	77	112	0	0
NACC1	112939	hgsc.bcm.edu	37	19	13246606	13246606	+	Silent	SNP	C	C	T	rs113254389		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NACC1-90	NM_052876	exon2	c.C585T	p.G195G	TGGGGGCGGCGGC	.	56	23	4	0	C|0.978;T|0.022	15	10	5	0	0
IER2	9592	hgsc.bcm.edu	37	19	13264242	13264242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	IER2-537	NM_004907	exon2	c.C242T	p.A81V	CCACGGCCGAGAC	.	66	41	2	0	.	44	21	23	0	0
PODNL1	79883	hgsc.bcm.edu	37	19	14043843	14043843	+	Missense_Mutation	SNP	C	C	T	rs80103045	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PODNL1-90	NM_024825	exon8	c.G1214A	p.R405H	AACCGGCGGAAGG	.	5	5	0	0	C|0.980;T|0.020	0	0	0	0	0
PKN1	5585	hgsc.bcm.edu	37	19	14552020	14552020	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PKN1-1481	NM_213560	exon2	c.C105T	p.P35P	GGCCCCCGGGGTA	.	29	21	2	0	.	23	13	10	0	0
ZNF85	7639	broad.mit.edu	37	19	21117821	21117821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF85-514	NM_003429	exon3	c.A197C	p.K66T	GTATGAAGAGACA	.	387	8	266	0	.	1	1	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42841342	42841342	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MEGF8-23	NM_001271938	exon8	c.G1497A	p.P499P	TGCCCCGCCAGGA	.	122	27	82	0	.	2	2	0	0	0
TPRX1	284355	ucsc.edu	37	19	48305650	48305650	+	Silent	SNP	C	C	T	rs112397458	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TPRX1-90	NM_198479	exon2	c.G618A	p.P206P	TGGGATCGGGCCT	.	60	8	21	0	C|0.912;T|0.088	0	0	0	0	0
SIGLEC5	8778	bcgsc.ca	37	19	52115645	52115645	+	Missense_Mutation	SNP	G	G	C	rs3829655	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SIGLEC5-92	NM_003830	exon9	c.C1495G	p.P499A	CTCCGGGGCTGTC	.	44	4	31	0	G|0.550;C|0.450	0	0	0	0	0
ZNF813	126017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53994970	53994970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF813-67	NM_001004301	exon4	c.A1484G	p.Y495C	AACCTTACAAGTG	.	230	42	184	0	.	51	51	0	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976342	54976342	+	Silent	SNP	G	G	C	rs117435208	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CDC42EP5-90	NM_145057	exon3	c.C390G	p.P130P	GGCCTGGGGGGGC	.	11	5	0	0	G|0.955;C|0.045	1	1	0	0	0
PTPRH	5794	broad.mit.edu	37	19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	rs200319382		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PTPRH-138	NM_002842	exon4	c.C508T	p.H170Y	TAGTGTGTGCTGT	.	364	11	283	2	.	1	1	0	0	0
NTSR2	23620	hgsc.bcm.edu	37	2	11810118	11810118	+	Silent	SNP	G	G	C	rs113661052		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NTSR2-946	NM_012344	exon1	c.C138G	p.G46G	CGCCGCGCCCAGC	.	23	13	0	0	G|0.500;C|0.500	1	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84880658	84880658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	DNAH6-69	NM_001370	exon34	c.T5294C	p.I1765T	ACCGAATACTAGC	.	140	6	106	0	.	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	4	4	0	0	T|0.765;C|0.235	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	5	5	0	0	C|0.795;G|0.205	0	0	0	0	0
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110053528	110053528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3RF3-24	NM_001099289	exon7	c.C1754G	p.S585W	CAGCCTCGCCCCC	.	259	53	26	0	.	3	2	1	0	0
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120439176	120439176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMEM177-91	NM_001105198	exon2	c.C747G	p.F249L	GGAGTTCTATGAG	.	170	30	132	0	.	7	5	2	0	0
SCN2A	6326	ucsc.edu;bcgsc.ca	37	2	166201291	166201291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SCN2A-142	NM_001040143	exon15	c.A2789T	p.H930L	TTTTCCACTCCTT	.	660	141	458	4	.	2	2	0	0	0
LRP2	4036	bcgsc.ca	37	2	170032989	170032989	+	Silent	SNP	C	C	T	rs2229265	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LRP2-175	NM_004525	exon54	c.G10503A	p.Q3501Q	ACTCAGCTGAAGG	.	229	7	191	0	T|0.264;G|0.268	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061831	26061831	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	.	.	.	.	AATGGTGAGAGAA	.	105	7	65	3	.	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	13	9	0	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	12	8	0	0	G|0.803;A|0.197	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45971108	45971108	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KRTAP10-2-135	NM_198693	exon1	c.G234A	p.S78S	GCAGCACGAGGGC	.	110	18	0	0	.	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	.	.	.	.	GCCCCCCTGCTGC	.	75	23	13	0	.	0	0	0	0	0
TPST2	8459	broad.mit.edu	37	22	26937214	26937214	+	Missense_Mutation	SNP	A	A	C	rs200758682		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TPST2-90	NM_001008566	exon3	c.T383G	p.V128G	TCCGTCACCCCCG	.	73	21	16	1	.	22	19	3	0	0
MIRLET7BHG	400931	mdanderson.org	37	22	46505652	46505652	+	RNA	SNP	C	C	G	rs58819475	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	.	.	.	.	CCCAGCCTGCCTC	.	71	34	21	1	C|0.910;G|0.090	1	1	0	0	0
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CACNA1D-100	NM_001128840	wholegene			TTCGTGGATGATG	.	461	8	272	0	.	0	0	0	0	0
PPP4R2	151987	broad.mit.edu;bcgsc.ca	37	3	73096477	73096477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP4R2-227	NM_174907	exon3	c.G257C	p.R86T	AGGAAAGAATACT	.	281	9	316	0	.	13	11	2	0	0
MUC13	56667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124629329	124629329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC13-90	NM_033049	exon10	c.A1267G	p.T423A	CAATAGTGAGGAT	.	143	35	226	0	.	0	0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLXNA1-93	NM_032242	exon1	c.T108G	p.G36G	CGGGGGTTCACAG	.	100	26	21	1	.	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733329	126733329	+	Silent	SNP	C	C	T	rs80308004	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLXNA1-93	NM_032242	exon12	c.C2613T	p.P871P	GTCCCCCGAGACG	.	37	7	0	0	C|0.959;T|0.041	0	0	0	0	0
RAB43	339122	hgsc.bcm.edu	37	3	128840321	128840321	+	Silent	SNP	C	C	T	rs76233276	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RAB43-369	NM_001204886	exon2	c.G12A	p.P4P	TGGGCCCGGCCCT	.	41	7	7	0	C|0.954;T|0.046	0	0	0	0	0
MYNN	55892	bcgsc.ca	37	3	169492101	169492101	+	Silent	SNP	C	C	T	rs10936599	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MYNN-91	NM_001185118	exon3	c.C18T	p.H6H	GCACCACTGTGAG	.	104	5	120	0	C|0.763;T|0.237	8	8	0	0	0
KCNMB2	10242	bcgsc.ca	37	3	178546026	178546026	+	Silent	SNP	T	T	C	rs9831934	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KCNMB2-91	NM_005832	exon5	c.T288C	p.N96N	ATTTAATTGCTCC	.	128	5	131	1	T|0.360;C|0.640	0	0	0	0	0
HRG	3273	bcgsc.ca	37	3	186395436	186395436	+	Missense_Mutation	SNP	C	C	T	rs1042445	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HRG-91	NM_000412	exon7	c.C1342T	p.R448C	GGACCCCGTCCCT	.	150	7	175	0	C|0.751;T|0.249	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195477786	195477786	+	Missense_Mutation	SNP	C	C	T	rs6808605	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC4-90	NM_018406	exon23	c.G15845A	p.G5282E	TCTTCCCCGGAGA	.	132	5	131	0	C|0.901;T|0.099	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC4-90	NM_018406	exon2	c.G8440A	p.A2814T	AGGTGGCGTGACC	.	499	20	465	10	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389192	1389192	+	Missense_Mutation	SNP	A	A	G	rs146804633	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CRIPAK-90	NM_175918	exon1	c.A893G	p.E298G	ATGTGGAGTGCCC	.	42	12	5	0	A|0.995;G|0.005	61	51	10	0	0
HGFAC	3083	hgsc.bcm.edu	37	4	3446682	3446682	+	Silent	SNP	C	C	T	rs144021102		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HGFAC-514	NM_001528	exon8	c.C978T	p.A326A	GGGCGCCGCGGCC	.	25	17	1	0	C|0.997;T|0.003	1	1	0	0	0
MAN2B2	23324	broad.mit.edu	37	4	6621656	6621656	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MAN2B2-92	NM_015274	exon18	c.T2817C	p.A939A	GCAGGCTGTGCTG	.	101	4	41	0	.	3	3	0	0	0
TBC1D1	23216	bcgsc.ca	37	4	37904089	37904089	+	Missense_Mutation	SNP	C	C	T	rs35859249	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TBC1D1-91	NM_015173	exon2	c.C373T	p.R125W	GTCCACCGGCAGA	.	107	6	84	0	C|0.922;T|0.078	1	1	0	0	0
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73280551	73280551	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS3-651	NM_014243	exon4	c.C642G	p.S214S	GTCTTTGGACATG	.	97	17	98	0	.	0	0	0	0	0
MTHFD2L	441024	broad.mit.edu;bcgsc.ca	37	4	75066988	75066988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MTHFD2L-91	NM_001144978	exon5	c.A613G	p.T205A	ATTCAAACATTTG	.	125	6	102	0	.	0	0	0	0	0
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145916557	145916557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ANAPC10-650	NM_001256709	exon7	c.A559G	p.I187V	AATCTATAGTTGT	.	47	12	59	0	.	14	8	6	0	0
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	FRG1-90	NM_004477	exon5	c.C409A	p.Q137K	AGAGAACAATGGG	.	346	11	252	2	.	103	102	0	0	1
ZDHHC11	79844	broad.mit.edu	37	5	825360	825360	+	Silent	SNP	T	T	C	rs201174878		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZDHHC11-92	NM_024786	exon8	c.A942G	p.K314K	CTTGGCTTTGACT	.	212	9	136	0	T|0.999;C|0.001	0	0	0	0	0
C5orf38	153571	hgsc.bcm.edu	37	5	2752393	2752393	+	Silent	SNP	G	G	C	rs185444055		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C5orf38-226	NM_178569	exon1	c.G15C	p.A5A	GCCCGCGGCTCGG	.	67	37	6	0	G|0.990;C|0.010	0	0	0	0	0
OTP	23440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76932656	76932656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OTP-69	NM_032109	exon2	c.C437G	p.S146C	ACTCGGGACTCGG	.	218	45	149	2	.	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128864313	128864313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS19-295	NM_133638	exon6	c.T1253A	p.M418K	TAGAGATGTCAAC	.	173	30	143	0	.	0	0	0	0	0
NRG2	9542	hgsc.bcm.edu	37	5	139422602	139422602	+	Missense_Mutation	SNP	C	C	T	rs188534354		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NRG2-526	NM_013982	exon1	c.G53A	p.R18Q	CTGCACCGACCCT	.	15	12	2	0	C|0.993;T|0.007	1	1	0	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531248	140531248	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDHB6-91	NM_018939	exon1	c.C1410T	p.S470S	CGGCAGCGTCAGC	.	303	17	67	0	.	14	7	7	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559514	140559514	+	Silent	SNP	G	G	A	rs142690275	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDHB8-131	NM_019120	exon1	c.G1899A	p.E633E	GAGCGAGCGCGAC	.	32	20	0	0	G|0.986;A|0.014	5	5	0	0	0
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151231120	151231120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GLRA1-91	NM_000171	exon7	c.T743A	p.M248K	TAACCCATCTGCC	.	264	60	173	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5085983	5085983	+	Silent	SNP	C	C	G	rs148308290		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP1R3G-136	NM_001145115	exon1	c.C264G	p.P88P	CTTGCCCGCCGAC	.	26	12	0	0	C|0.993;G|0.007	1	1	0	0	0
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	26157045	26157045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HIST1H1E-154	NM_005321	exon1	c.G427T	p.G143W	GCGACGGGGGCGG	.	138	37	51	0	.	0	0	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910688	29910688	+	Missense_Mutation	SNP	A	A	G	rs41544012	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HLA-A-92	NM_001242758	exon2	c.A228G	p.I76M	GTGGATAGAGCAG	.	516	39	110	2	A|0.885;G|0.115	2212	2208	2	1	1
HLA-A	3105	hgsc.bcm.edu	37	6	29910699	29910699	+	Missense_Mutation	SNP	G	G	A	rs1059451		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HLA-A-92	NM_001242758	exon2	c.G239A	p.G80E	AGGAGGGGCCGGA	.	528	28	130	0	G|0.999;A|0.001	1791	1790	1	0	0
CPNE5	57699	hgsc.bcm.edu	37	6	36710069	36710069	+	Silent	SNP	C	C	A	rs150763631	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CPNE5-91	NM_020939	exon21	c.G1758T	p.A586A	GGGGGACGCAGGG	.	13	4	0	0	C|0.989;A|0.011	1	0	1	0	0
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43485110	43485110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	POLR1C-90	NM_203290	exon2	c.G136A	p.E46K	CGCTTCGAGAAGG	.	154	8	87	0	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160453715	160453715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	IGF2R-118	NM_000876	exon8	c.A1015G	p.I339V	GTCTCCATAGACC	.	119	18	52	0	.	17	8	9	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	7	7	0	0	T|0.654;G|0.346	0	0	0	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4841489	4841489	+	Silent	SNP	G	G	A	rs151229803		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RADIL-994	NM_018059	exon12	c.C2637T	p.A879A	AGGGGGGGCCTGT	.	17	12	1	0	G|0.991;A|0.009	2	1	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	4	4	0	0	C|0.329;G|0.671	7	0	7	0	0
ELMO1	9844	bcgsc.ca	37	7	37272769	37272769	+	Silent	SNP	C	C	T	rs35387639	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ELMO1-96	NM_014800	exon8	c.G480A	p.T160T	GAAGGCCGTCAGG	.	128	5	95	0	C|0.964;T|0.036	1	1	0	0	0
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	110764308	110764308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LRRN3-154	NM_018334	exon2	c.T1480C	p.Y494H	GGTTTATATACTT	.	196	35	162	0	.	1	1	0	0	0
CAPZA2	830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116557779	116557779	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CAPZA2-514	NM_006136	exon10	c.721-2A>G	.	TTTCATAGACTGC	.	116	26	75	0	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu	37	8	10470130	10470130	+	Missense_Mutation	SNP	C	C	T	rs79401306		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RP1L1-139	NM_178857	exon4	c.G1478A	p.R493Q	GCTTTCCGCTCAG	.	9	5	0	0	C|0.987;T|0.013	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu	37	8	10470764	10470764	+	Missense_Mutation	SNP	T	T	G	rs75814156		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RP1L1-139	NM_178857	exon4	c.A844C	p.N282H	GGGGGTTGCTAGG	.	53	29	2	0	T|0.984;G|0.016	0	0	0	0	0
SLC25A37	51312	bcgsc.ca	37	8	23423669	23423669	+	Missense_Mutation	SNP	A	A	G	rs2942194	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SLC25A37-90	NM_016612	exon2	c.A259G	p.I87V	ACAAGTATCTACG	.	99	5	68	0	A|0.818;G|0.182	13	13	0	0	0
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	62596612	62596612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ASPH-93	NM_001164754	exon2	c.A239G	p.Y80C	TCCTCATAGTCAA	.	54	10	37	0	.	35	27	8	0	0
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87917323	87917323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CNBD1-3	NM_173538	exon3	c.A173G	p.N58S	TGAGCAATATCTT	.	69	17	68	0	.	0	0	0	0	0
MROH5	389690	hgsc.bcm.edu	37	8	142477498	142477498	+	Splice_Site	SNP	C	C	T	rs76084829	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_207414	exon19	c.2322+1G>A	.	CCCTCACGATCTC	.	48	18	0	0	C|0.982;T|0.018	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378731	144378731	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF696-90	NM_030895	exon3	c.C886G	p.Q296E	GCCTGCCAGGACT	.	12	6	0	0	.	6	4	2	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940427	144940427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPPK1-25	NM_031308	exon1	c.G6995A	p.R2332Q	TGCTCCCGGACGA	.	202	17	32	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144946602	144946602	+	Missense_Mutation	SNP	G	G	A	rs147805507		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPPK1-25	NM_031308	exon1	c.C820T	p.R274C	CGGCACGTGCACT	.	55	37	1	0	G|0.995;A|0.005	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144997023	144997023	+	Silent	SNP	C	C	T	rs146381488	by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLEC-141	NM_201380	exon31	c.G7485A	p.A2495A	CTCCTCCGCCAGC	.	32	17	1	0	C|0.998;T|0.002	5	1	4	0	0
FAM205A	259308	broad.mit.edu	37	9	34724786	34724786	+	Silent	SNP	G	G	A	rs72617336	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001141917	exon4	c.C2451T	p.P817P	TTCCACGGGACTA	.	191	6	140	1	G|0.579;A|0.421	0	0	0	0	0
FAM205A	259308	broad.mit.edu	37	9	34724796	34724796	+	Missense_Mutation	SNP	T	T	A	rs3739879	bycluster	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001141917	exon4	c.A2441T	p.E814V	CTAGGCTCCATCT	.	179	7	121	1	T|1.000;|0.000	0	0	0	0	0
PGM5	5239	hgsc.bcm.edu	37	9	70972109	70972109	+	Silent	SNP	C	C	T	rs79088300	byfrequency;by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PGM5-92	NM_021965	exon1	c.C66T	p.A22A	GCCGGCCGGCGGC	.	10	7	0	0	C|0.936;T|0.064	11	5	6	0	0
TNC	3371	bcgsc.ca	37	9	117797597	117797597	+	Silent	SNP	T	T	C	rs12347433	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TNC-517	NM_002160	exon22	c.A5673G	p.R1891R	CAAGTCTCTTGGA	.	89	7	87	0	T|0.813;C|0.187	0	0	0	0	0
GOLGA1	2800	broad.mit.edu	37	9	127693630	127693630	+	Missense_Mutation	SNP	T	T	C	rs148050398	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GOLGA1-91	NM_002077	exon4	c.A191G	p.N64S	TGTTCATTCCTTC	.	98	3	82	1	T|0.999;C|0.001	6	6	0	0	0
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135447854	135447854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C9orf171-157	NM_207417	exon7	c.T920C	p.V307A	GTGCCGTGCGCCA	.	43	15	33	0	.	0	0	0	0	0
EXD3	54932	hgsc.bcm.edu	37	9	140243589	140243589	+	Silent	SNP	T	T	C	rs114716688	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EXD3-90	NM_017820	exon16	c.A1803G	p.K601K	TGACGCTTTCTGC	.	45	26	0	0	T|0.979;C|0.021	5	1	4	0	0
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18631388	18631388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CDKL5-838	NM_003159	exon15	c.G2269T	p.D757Y	GCATTCGATCCAT	.	253	43	259	0	.	0	0	0	0	0
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19587243	19587243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3KBP1-130	NM_031892	exon13	c.C1362T	p.L454L	GTCCGAGAGATCT	.	142	33	109	0	.	7	3	4	0	0
PPP1R3F	89801	hgsc.bcm.edu	37	X	49126714	49126714	+	Silent	SNP	C	C	T	rs111938103		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP1R3F-229	NM_033215	exon1	c.C382T	p.L128L	GGCCGTCTGGAGC	.	8	6	0	0	C|0.941;T|0.059	0	0	0	0	0
TRPC5	7224	broad.mit.edu;bcgsc.ca	37	X	111195291	111195291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TRPC5-130	NM_012471	exon2	c.C358T	p.R120W	TGGGCCGCCTGTA	.	189	6	197	0	.	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu	37	X	114424608	114424608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001145346	exon1	c.C604A	p.P202T	GCCGGCCCACCCC	.	38	25	1	0	.	0	0	0	0	0
GATA3	2625	hgsc.bcm.edu	37	10	8100397	8100398	+	In_Frame_Ins	INS	-	-	CGG	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GATA3-1004	NM_002051	exon3	c.371_372insCGG	p.H124delinsHG	TCCACCACGGCTC	.	54	15	4	1	.	0	0	0	0	0
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT	rs113614842	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	CGCCGCCGCTGCT	.	94	18	35	0	-|0.500;GCC|0.250;GCT|0.250	0	0	0	0	0
SOCS7	30837	broad.mit.edu	37	17	36508662	36508663	+	In_Frame_Ins	INS	-	-	AGC	rs41492748		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SOCS7-227	NM_014598	exon1	c.535_536insAGC	p.E179delinsEQ	AGAGGGGAGCAGC	.	90	19	9	0	.	0	0	0	0	0
RALY	22913	hgsc.bcm.edu	37	20	32664865	32664866	+	In_Frame_Ins	INS	-	-	AGC	rs57852506	bycluster	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RALY-91	NM_016732	exon8	c.690_691insAGC	p.A230delinsAS	TGGCGCCGGCGGC	.	31	0	13	0	-|0.167;AGC|0.833	0	0	0	0	0
SGK223	0	bcgsc.ca	37	8	8234868	8234869	+	In_Frame_Ins	INS	-	-	GCCGCT	rs150979349	bycluster;by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001080826	exon2	c.1051_1052insAGCGGC	p.A351delinsSGA	TACTGGCGCCGCT	.	94	17	34	0	.	0	0	0	0	0