Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 PLEKHG5 57449 hgsc.bcm.edu;broad.mit.edu 37 1 6530886 6530886 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLEKHG5-652 NM_001265592 exon15 c.C1688A p.P563H TGGTGGGGTTTGG . 78 5 74 0 . 0 0 0 0 0 RERE 473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 8557547 8557547 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RERE-515 NM_012102 exon10 c.G922T p.D308Y CTGTATCACCATC . 177 73 258 1 . 3 2 1 0 0 ANGPTL7 10218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11249964 11249964 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANGPTL7-90 NM_021146 exon1 c.G328T p.D110Y CAAATTGACATCA . 96 36 114 0 . 0 0 0 0 0 KAZN 23254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 15390118 15390118 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KAZN-91 NM_015209 exon7 c.G1098T p.Q366H TGTACAGGTAGGT . 87 35 98 0 . 0 0 0 0 0 IFI6 2537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 27995817 27995817 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IFI6-91 NM_002038 exon2 c.G9T p.Q3H CGCCTTCTGCCGC . 96 13 70 0 . 260 204 56 0 0 OPRD1 4985 hgsc.bcm.edu 37 1 29138975 29138975 + Missense_Mutation SNP G G T rs1042114 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OPRD1-69 NM_000911 exon1 c.G80T p.C27F GCGCCTGCCCCAG . 10 10 0 0 G|0.061;T|0.939 0 0 0 0 0 NCDN 23154 broad.mit.edu;bcgsc.ca 37 1 36026523 36026523 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NCDN-155 NM_014284 exon3 c.C771A p.C257X TGAATGCTACCGG . 69 5 56 0 . 12 12 0 0 0 FOXJ3 22887 broad.mit.edu;bcgsc.ca 37 1 42657323 42657323 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FOXJ3-228 NM_001198851 exon11 c.C1002A p.P334P ACTGCTGGGAGAG . 202 8 242 0 . 5 5 0 0 0 CCDC30 728621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 43055014 43055014 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCDC30-90 NM_001080850 exon9 c.G1243T p.D415Y AACGTAGATGAGT . 86 42 125 0 . 7 6 1 0 0 DMAP1 55929 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 44685801 44685801 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DMAP1-226 NM_001034024 exon10 c.G1164T p.L388L TGAGCTGCAGATG . 200 13 153 0 . 80 76 4 0 0 MAST2 23139 broad.mit.edu 37 1 46493447 46493447 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAST2-581 NM_015112 exon17 c.G1964T p.G655V ACTTTGGACTGTC . 155 4 157 1 . 0 0 0 0 0 NSUN4 387338 bcgsc.ca 37 1 46810498 46810498 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NSUN4-90 NM_199044 exon2 c.C119A p.A40D TCCCTGCTGTTCG . 125 52 133 3 . 6 6 0 0 0 ELAVL4 1996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 50659584 50659584 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ELAVL4-516 NM_001144775 exon4 c.G553T p.V185F GATCAAGTCACAG . 170 68 181 0 . 0 0 0 0 0 ZFYVE9 9372 bcgsc.ca 37 1 52704417 52704417 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFYVE9-230 NM_007324 exon4 c.C1328A p.A443E GATTGGCAGATGC . 122 41 100 3 . 0 0 0 0 0 CYP2J2 1573 broad.mit.edu;bcgsc.ca 37 1 60377418 60377418 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP2J2-91 NM_000775 exon4 c.C546A p.F182L GATCTTGAAATGA . 208 9 263 0 . 1 1 0 0 0 LEPR 3953 hgsc.bcm.edu;broad.mit.edu 37 1 66098847 66098847 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LEPR-91 NM_001003679 exon20 c.C2686A p.L896I GACATTCTTTGAA . 26 6 24 0 . 0 0 0 0 0 IL23R 149233 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67724387 67724387 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IL23R-90 NM_144701 exon11 c.C1466A p.S489X AAATTTCAAATTT . 118 25 168 1 . 0 0 0 0 0 NEXN 91624 broad.mit.edu 37 1 78401561 78401561 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NEXN-92 NM_144573 exon11 c.C1305A p.I435I ACTGATCAAATTA . 126 9 125 2 . 0 0 0 0 0 LPHN2 23266 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 82409449 82409449 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LPHN2-525 NM_012302 exon5 c.C1194A p.A398A TCCTGCCCAAGGT . 124 25 106 1 . 0 0 0 0 0 CTBS 1486 broad.mit.edu 37 1 85039999 85040007 + In_Frame_Del DEL GCAGCGCCA GCAGCGCCA - rs142534762 bycluster;by1000genomes;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CTBS-90 NM_004388 exon1 c.92_100del p.31_34del CGAGCCGCAGCGC . 66 26 6 0 . 0 0 0 0 0 WDR63 126820 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 85592293 85592293 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WDR63-95 NM_145172 exon20 c.G2212A p.G738R GAAGATGGATACA . 111 7 89 0 . 4 4 0 0 0 TGFBR3 7049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 92187701 92187701 + Missense_Mutation SNP C C A rs140100898 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TGFBR3-93 NM_001195683 exon8 c.G886T p.A296S TAGGAGCCTGAAG . 57 8 40 0 C|0.999;A|0.001 0 0 0 0 0 SLC44A3 126969 broad.mit.edu;bcgsc.ca 37 1 95310885 95310885 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC44A3-91 NM_001114106 exon9 c.G937T p.V313F TTGACAGTTGAGC . 55 29 61 2 . 4 1 3 0 0 AHCYL1 10768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110561730 110561730 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AHCYL1-91 NM_006621 exon14 c.G1375T p.A459S ATCACAGCCACAA . 57 18 57 0 . 0 0 0 0 0 CHIA 27159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 111862838 111862838 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CHIA-91 NM_201653 exon12 c.G1181T p.C394F CAGGTTGCACGGC . 80 9 103 0 . 0 0 0 0 0 KCND3 3752 broad.mit.edu 37 1 112525124 112525126 + In_Frame_Del DEL GAA GAA - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCND3-155 NM_004980 exon2 c.223_225del p.75_75del CTCGTTGAAGAAG . 199 7 196 0 . 0 0 0 0 0 MAGI3 260425 broad.mit.edu;ucsc.edu 37 1 114225611 114225611 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAGI3-524 NM_001142782 exon21 c.G3421T p.E1141X ATATTTGAAGAGT . 109 19 120 2 . 5 5 0 0 0 SPAG17 200162 broad.mit.edu;bcgsc.ca 37 1 118539252 118539252 + Missense_Mutation SNP G G T rs150351466 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SPAG17-158 NM_206996 exon33 c.C4891A p.H1631N GCTGATGATTCTT . 85 6 113 1 G|1.000;A|0.000 0 0 0 0 0 TBX15 6913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 119427957 119427957 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TBX15-136 NM_152380 exon8 c.G889T p.A297S TTCGGGCACATGG . 42 13 54 0 . 1 1 0 0 0 MRPL9 65005 bcgsc.ca 37 1 151735532 151735532 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MRPL9-91 NM_031420 exon2 c.C244A p.L82M CCACCAGCTTATA . 192 73 156 2 . 25 20 5 0 0 RORC 6097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 151787731 151787731 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RORC-227 NM_005060 exon5 c.C469A p.Q157K GCAGCTGCCCGTC . 49 9 66 0 . 2 1 1 0 0 LCE6A 448835 broad.mit.edu 37 1 152816014 152816014 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001128600 exon2 c.G18T p.Q6H GAAGCAGCAATCT . 81 11 80 2 . 0 0 0 0 0 SPRR2A 6700 broad.mit.edu 37 1 153029123 153029123 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SPRR2A-69 NM_005988 exon2 c.C89A p.P30Q CACTTCGGGGGTG . 54 5 54 0 . 61 61 0 0 0 IL6R 3570 broad.mit.edu;bcgsc.ca 37 1 154427044 154427044 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IL6R-229 NM_000565 exon9 c.G1147T p.A383S TGCATTGCCATTG . 68 7 84 0 . 0 0 0 0 0 KCNN3 3782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 154841756 154841756 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCNN3-91 NM_001204087 exon1 c.G685T p.A229S GGTGGGCATGGTT . 87 14 120 0 . 0 0 0 0 0 YY1AP1 55249 broad.mit.edu;bcgsc.ca 37 1 155630075 155630075 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . YY1AP1-93 NM_001198903 exon10 c.C2040A p.I680I AGGTTTGATACAG . 257 25 270 1 . 32 27 5 0 0 NTRK1 4914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156841476 156841476 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NTRK1-1393 NM_001012331 exon7 c.G779T p.R260M TCAACAGGAAGAA . 161 21 138 0 . 0 0 0 0 0 FCRL3 115352 broad.mit.edu;bcgsc.ca 37 1 157665960 157665960 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FCRL3-156 NM_052939 exon7 c.G1002T p.K334N CTGGGTCTTTCTA . 112 6 138 2 . 0 0 0 0 0 LY9 4063 bcgsc.ca 37 1 160784476 160784476 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LY9-91 NM_001261457 exon4 c.G997A p.G333S GACGCCGGCCCCT . 161 143 164 4 . 0 0 0 0 0 FMO1 2326 ucsc.edu 37 1 171227313 171227313 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FMO1-515 NM_002021 exon2 c.C87A p.T29T GCCCACCTGCTTT . 47 10 57 3 . 0 0 0 0 0 TOR3A 64222 hgsc.bcm.edu 37 1 179051300 179051300 + Missense_Mutation SNP T T C rs2296377 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TOR3A-90 NM_022371 exon1 c.T37C p.F13L CTCTTTTTCCTGC . 9 9 0 0 T|0.229;C|0.771 2 0 2 0 0 RGSL1 353299 broad.mit.edu 37 1 182443145 182443145 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RGSL1-226 NM_001137669 exon6 c.C899A p.S300X CTTCTTCAAAGGA . 92 4 106 0 . 0 0 0 0 0 HMCN1 83872 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186050464 186050464 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HMCN1-113 NM_031935 exon56 c.G8725T p.D2909Y CAGAAAGATGGAC . 77 24 72 1 . 0 0 0 0 0 TPR 7175 hgsc.bcm.edu;bcgsc.ca 37 1 186301382 186301382 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TPR-228 NM_003292 exon38 c.C5549A p.T1850K TCCACTGTATCAT . 78 4 107 0 . 12 12 0 0 0 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 186909138 186909138 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLA2G4A-721 NM_024420 exon10 c.G945T p.L315F CAGTTTGAAGGAA . 70 7 53 0 . 2 2 0 0 0 CFHR4 10877 ucsc.edu;bcgsc.ca 37 1 196883674 196883674 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CFHR4-93 NM_001201550 exon8 c.C1230A p.G410G TAATGGCATGCGG . 344 45 492 6 . 0 0 0 0 0 CACNA1S 779 broad.mit.edu;bcgsc.ca 37 1 201058470 201058470 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CACNA1S-94 NM_000069 exon6 c.C816A p.I272I GTGGGTGATGCCA . 241 10 180 2 . 0 0 0 0 0 IGFN1 91156 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 201193916 201193916 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IGFN1-71 NM_001164586 exon21 c.G10400T p.G3467V TGGCTGGACTCTC . 200 76 154 1 . 0 0 0 0 0 TMEM183A 92703 bcgsc.ca 37 1 202985162 202985162 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TMEM183A-90 NM_138391 exon5 c.C602A p.A201D TCCGGGCTTGTGT . 87 42 108 3 . 31 19 12 0 0 LRRN2 10446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 204588338 204588338 + Silent SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRRN2-514 NM_006338 exon3 c.C783T p.P261P GAGCCCGGGCACC . 50 7 46 0 . 0 0 0 0 0 DSTYK 25778 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205156626 205156626 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DSTYK-333 NM_199462 exon2 c.C574A p.L192M CCTCCAGATCCTC . 128 53 148 1 . 1 1 0 0 0 ACBD3 64746 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 226347014 226347014 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACBD3-226 NM_022735 exon5 c.C774A p.F258L CTGCTGGAACTGC . 153 23 182 1 . 9 6 3 0 0 DISC1 27185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 232144789 232144789 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DISC1-91 NM_001164537 exon12 c.G2397T p.Q799H TGAACAGAAAGAG . 43 19 55 0 . 0 0 0 0 0 NTPCR 84284 ucsc.edu 37 1 233105834 233105834 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NTPCR-91 NM_032324 exon4 c.C474G p.I158M AGAAATCAGAAAC . 181 24 189 4 . 40 37 3 0 0 FH 2271 ucsc.edu 37 1 241667408 241667408 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FH-416 NM_000143 exon7 c.G1042T p.G348C GAGGACCAGAACC . 79 14 144 2 . 116 95 21 0 0 EXO1 9156 broad.mit.edu 37 1 242042620 242042620 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EXO1-661 NM_130398 exon13 c.G2084T p.C695F CTCAGTGCTCTAG . 28 6 28 0 . 4 2 2 0 0 SFMBT2 57713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7214601 7214601 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SFMBT2-141 NM_001029880 exon18 c.G2007T p.K669N GATCTTCTTTCTC . 22 9 21 0 . 0 0 0 0 0 GATA3 2625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 8115981 8115981 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GATA3-1004 NM_001002295 exon6 c.G1330T p.G444C GCCATGGGTTAGA . 64 26 61 0 . 1 1 0 0 0 DHTKD1 55526 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 12148305 12148305 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DHTKD1-515 NM_018706 exon11 c.G1957T p.E653X AGCATTGAGAGCC . 120 55 189 1 . 2 2 0 0 0 MLLT10 8028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 21962834 21962834 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MLLT10-658 NM_001195626 exon10 c.C1607A p.S536Y GCTCATCTCCAGT . 43 7 73 0 . 0 0 0 0 0 COMMD3-BMI1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 22618192 22618192 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001204062 exon14 c.G1131T p.M377I AAGAATGAAGATC . 29 8 37 0 . 12 5 7 0 0 GPR158 57512 ucsc.edu;bcgsc.ca 37 10 25839971 25839971 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR158-141 NM_020752 exon6 c.G1471T p.G491C CTTCTCGGTTTTG . 131 24 167 2 . 0 0 0 0 0 SVIL 6840 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 29818653 29818653 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SVIL-96 NM_021738 exon12 c.G2227T p.E743X CCACCTCTTCAGT . 44 17 50 1 . 0 0 0 0 0 GJD4 219770 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 35897531 35897531 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GJD4-155 NM_153368 exon2 c.G1090T p.A364S CTGAGAGCCAGGA . 158 10 128 0 . 0 0 0 0 0 BMS1 9790 broad.mit.edu 37 10 43292520 43292520 + Nonsense_Mutation SNP G G T rs146520651 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BMS1-93 NM_014753 exon10 c.G1828T p.E610X GAAAATGAAGAGG . 98 4 123 0 G|1.000;C|0.000 7 7 0 0 0 C10orf71 118461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 50531426 50531426 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C10orf71-90 NM_001135196 exon3 c.C836A p.S279X TTGAGTCATGGAA . 136 38 161 0 . 0 0 0 0 0 AGAP7 653268 bcgsc.ca 37 10 51464918 51464918 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001077685 exon7 c.G1538T p.G513V TCATTGCCAATAG . 116 16 137 0 . 17 9 8 0 0 DKK1 22943 broad.mit.edu 37 10 54076186 54076186 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DKK1-1083 NM_012242 exon3 c.C538A p.H180N ATGTATCACACCA . 102 4 124 1 . 0 0 0 0 0 ARID5B 84159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 63845627 63845627 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARID5B-94 NM_032199 exon9 c.G1366T p.E456X GAAAAAGAAAATG . 18 10 29 0 . 3 1 2 0 0 CDH23 64072 broad.mit.edu 37 10 73437259 73437259 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDH23-563 NM_022124 exon15 c.C1561A p.L521M GCCAGGCTGGACT . 84 6 131 1 . 2 2 0 0 0 SEC24C 9632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 75528805 75528805 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SEC24C-92 NM_198597 exon17 c.C2319A p.S773R CATGAGCAACACG . 97 46 153 0 . 22 17 5 0 0 KCNMA1 3778 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 78761184 78761184 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCNMA1-93 NM_001161352 exon19 c.C2247A p.C749X GGTGGAGCAATCA . 152 19 208 2 . 0 0 0 0 0 CYP2C9 1559 bcgsc.ca 37 10 96748656 96748656 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP2C9-96 NM_000771 exon9 c.C1344A p.F448L TTTATTCCTGACC . 96 46 141 4 . 0 0 0 0 0 RRP12 23223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 99126277 99126277 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RRP12-92 NM_015179 exon28 c.G3317T p.R1106L CATGCCCGGCTCC . 58 10 75 0 . 60 56 4 0 0 NFKB2 4791 hgsc.bcm.edu 37 10 104159196 104159196 + Silent SNP A A G rs4919633 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NFKB2-522 NM_001077494 exon13 c.A1269G p.P423P GGAGCCAAGCGCC . 4 4 0 0 A|0.009;G|0.991 9 0 9 0 0 AS3MT 57412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 104638614 104638614 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AS3MT-44 NM_020682 exon9 c.C751A p.R251S GACTGTCGTTTTG . 96 17 128 0 . 20 15 5 0 0 CCDC172 374355 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 118101581 118101581 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_198515 exon5 c.G316T p.D106Y GAGGAAGACAAAT . 92 7 88 0 . 0 0 0 0 0 TACC2 10579 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 123846988 123846988 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TACC2-296 NM_206862 exon4 c.G4973T p.G1658V TTGGGGGTGAAAG . 165 35 216 2 . 0 0 0 0 0 MKI67 4288 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 129903482 129903482 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MKI67-519 NM_002417 exon13 c.G6622T p.D2208Y GCTTGTCAGTGCA . 158 68 149 1 . 6 2 4 0 0 MTG1 92170 hgsc.bcm.edu 37 10 135207754 135207754 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MTG1-91 NM_138384 exon1 c.C30G p.S10R GTGCAGCGCCGCC . 32 29 1 0 . 18 0 18 0 0 MUC5B 727897 bcgsc.ca 37 11 1262202 1262202 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_002458 exon31 c.G4092T p.L1364L AAACCTGAGGCAG . 102 24 92 2 . 0 0 0 0 0 OR51G1 79324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 4945010 4945010 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR51G1-70 NM_001005237 exon1 c.T560C p.M187T AGCTTCATGATCT . 89 15 85 0 . 0 0 0 0 0 OR51B2 79345 bcgsc.ca 37 11 5345495 5345495 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR51B2-71 NM_033180 exon1 c.G33T p.L11F AGTCAGCAAAAAA . 262 13 314 3 . 0 0 0 0 0 OR51I2 390064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 5475467 5475467 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR51I2-72 NM_001004754 exon1 c.C749A p.A250E TACTTGCATTTTA . 129 20 175 0 . 0 0 0 0 0 UBQLN3 50613 broad.mit.edu;bcgsc.ca 37 11 5530029 5530029 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UBQLN3-93 NM_017481 exon2 c.C760A p.L254I TGCAAAGCACATT . 102 5 99 0 . 0 0 0 0 0 PDE3B 5140 broad.mit.edu;bcgsc.ca 37 11 14865507 14865507 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDE3B-90 NM_000922 exon12 c.G2455T p.A819S GCAGCTGCCATGC . 80 71 92 2 . 0 0 0 0 0 SPTY2D1 144108 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 18636678 18636678 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SPTY2D1-90 NM_194285 exon3 c.G1143T p.Q381H GCTGGGCTGCCCA . 76 14 110 1 . 4 4 0 0 0 NELL1 4745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 20907034 20907034 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NELL1-155 NM_006157 exon5 c.C551A p.P184Q TTCCCCCAGGAAT . 77 35 81 0 . 1 1 0 0 0 LUZP2 338645 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 24784833 24784833 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LUZP2-92 NM_001252010 exon5 c.G375A p.M125I CAAAATGATCCGA . 134 24 186 1 . 0 0 0 0 0 DCDC5 100506627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 30930510 30930510 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DCDC5-23 NM_020869 exon10 c.G1222T p.E408X TGTTTTCTTCTTT . 88 11 66 0 . 0 0 0 0 0 CCDC73 493860 broad.mit.edu;ucsc.edu;mdanderson.org 37 11 32739646 32739646 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCDC73-91 NM_001008391 exon3 c.G183T p.M61I CTGTGTCTCCACA . 10 7 11 0 . 0 0 0 0 0 RAG1 5896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 36597790 36597790 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RAG1-230 NM_000448 exon2 c.C2936A p.A979D TGAATGCCAGGCA . 41 37 57 0 . 0 0 0 0 0 DGKZ 8525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 46397072 46397072 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DGKZ-676 NM_001105540 exon21 c.G2365T p.D789Y CAGGTGGATGGCG . 93 48 25 0 . 6 2 4 0 0 OR4X2 119764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 48267186 48267186 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR4X2-68 NM_001004727 exon1 c.C531A p.L177L CCTTCTCAAACTT . 70 37 121 0 . 0 0 0 0 0 OR4A16 81327 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55110948 55110948 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR4A16-69 NM_001005274 exon1 c.C272T p.S91F CTATTTCCTTGTC . 85 13 138 1 . 0 0 0 0 0 OR5M10 390167 broad.mit.edu;bcgsc.ca 37 11 56344908 56344908 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001004741 exon1 c.G290T p.C97F GTGAAGCATCCAG . 181 9 274 1 . 0 0 0 0 0 TNKS1BP1 85456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57087809 57087809 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TNKS1BP1-91 NM_033396 exon3 c.G472T p.A158S TGGTGGCCGCGAA . 60 28 59 0 . 17 9 8 0 0 OR5B12 390191 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 58206901 58206901 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR5B12-68 NM_001004733 exon1 c.C724A p.H242N TAAGGTGGGAAGC . 204 82 237 1 . 0 0 0 0 0 TMEM132A 54972 hgsc.bcm.edu 37 11 60701987 60701987 + Silent SNP G G A rs7715 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TMEM132A-227 NM_017870 exon9 c.G1590A p.S530S GGCGTCGGATGAG . 4 4 0 0 G|0.581;A|0.419 54 0 54 0 0 MEN1 4221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64574692 64574692 + Splice_Site SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MEN1-3017 NM_130804 exon7 c.799-1G>T . CAGCTTCTAGGAG . 26 10 34 0 . 2 0 2 0 0 PACS1 55690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66001334 66001334 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PACS1-74 NM_018026 exon16 c.C1917A p.L639L CATCCTCAGGTTC . 132 70 143 0 . 8 4 4 0 0 CD248 57124 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 66083700 66083700 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CD248-154 NM_020404 exon1 c.G799T p.D267Y GCCCGTCTGCTGC . 124 9 74 0 . 9 9 0 0 0 PPP1CA 5499 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 67167109 67167110 + Frame_Shift_Del DEL CA CA - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PPP1CA-659 NM_001008709 exon4 c.478_479del p.160_160del GTTTTCCACAGTT . 120 20 182 0 . 0 0 0 0 0 FGF19 9965 hgsc.bcm.edu 37 11 69518485 69518485 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FGF19-658 NM_005117 exon1 c.G160T p.G54W AGAGCCCGTGGGG . 9 9 2 0 . 0 0 0 0 0 NADSYN1 55191 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 71184625 71184625 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NADSYN1-92 NM_018161 exon8 c.G559T p.D187Y CACATCGACATGG . 131 65 139 1 . 0 0 0 0 0 RNF169 254225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 74546991 74546991 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RNF169-69 NM_001098638 exon6 c.C1343A p.S448X CCCTTTCAAAAGC . 46 10 57 0 . 3 3 0 0 0 MYO7A 4647 broad.mit.edu 37 11 76905570 76905570 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MYO7A-138 NM_000260 exon32 c.4323+1G>T . AAGAAGGTAGAAG . 82 3 87 0 . 0 0 0 0 0 USP35 57558 broad.mit.edu 37 11 77920580 77920580 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP35-637 NM_020798 exon10 c.C1679A p.A560D CCCCGGCCCCAAG . 109 4 133 0 . 10 10 0 0 0 DLG2 1740 bcgsc.ca 37 11 83641481 83641481 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DLG2-96 NM_001142699 exon15 c.G1386T p.K462N AGCAGGCTTATCA . 172 39 210 4 . 2 2 0 0 0 EXPH5 23086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108380726 108380726 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EXPH5-95 NM_015065 exon6 c.G5508T p.G1836G TTCATTCCCAAGG . 70 35 92 0 . 0 0 0 0 0 OR10G4 390264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 123886949 123886949 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR10G4-93 NM_001004462 exon1 c.C668A p.S223Y TCTGTTCCATCCT . 221 97 285 1 . 0 0 0 0 0 BARX2 8538 broad.mit.edu;bcgsc.ca 37 11 129306690 129306690 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BARX2-90 NM_003658 exon2 c.C232A p.R78S ATCACCCGCCAGC . 138 11 159 1 . 0 0 0 0 0 ADAMTS8 11095 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 130275863 130275863 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ADAMTS8-226 NM_007037 exon9 c.G2260T p.E754X CCTGCTCTATGGC . 94 46 99 1 . 0 0 0 0 0 IQSEC3 440073 hgsc.bcm.edu 37 12 247900 247900 + Silent SNP G G A rs7313003 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IQSEC3-560 NM_001170738 exon4 c.G1371A p.E457E GCCGGAGAGCGCG . 4 4 0 0 G|0.768;A|0.232 0 0 0 0 0 CACNA2D4 93589 ucsc.edu;bcgsc.ca 37 12 1902879 1902879 + Missense_Mutation SNP G G T rs145150489 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CACNA2D4-23 NM_172364 exon38 c.C3356A p.P1119Q AGGGGCGGCGAGG . 379 57 179 3 G|0.998;A|0.002 1 1 0 0 0 ANO2 57101 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 5685071 5685071 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANO2-139 NM_020373 exon24 c.C2550A p.F850L GACGTTGAAAAAG . 186 18 145 0 . 0 0 0 0 0 PIANP 196500 broad.mit.edu;ucsc.edu 37 12 6805620 6805620 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001244014 exon4 c.C594A p.I198I CTTGAAGATGATG . 121 12 108 2 . 0 0 0 0 0 CD163 9332 broad.mit.edu;bcgsc.ca 37 12 7653770 7653770 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CD163-98 NM_203416 exon3 c.G422T p.C141F TGAGTACAGTTAC . 169 8 133 1 . 2 2 0 0 0 PHC1 1911 broad.mit.edu 37 12 9085175 9085175 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PHC1-154 NM_004426 exon8 c.C1122A p.I374I ACAGATCCAGCCC . 268 18 185 1 . 6 6 0 0 0 GABARAPL1 23710 broad.mit.edu;bcgsc.ca 37 12 10365807 10365807 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GABARAPL1-90 NM_031412 exon1 c.G79T p.D27Y TATCCGGACAGGG . 258 71 123 2 . 121 68 53 0 0 STYK1 55359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 10777358 10777358 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . STYK1-1379 NM_018423 exon8 c.C818A p.A273D TCATAAGCCAGGC . 258 63 164 0 . 0 0 0 0 0 GPRC5D 55507 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 13102863 13102863 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPRC5D-90 NM_018654 exon1 c.G456T p.M152I TCTGGTCATGATG . 271 38 171 1 . 0 0 0 0 0 GRIN2B 2904 bcgsc.ca 37 12 13761624 13761624 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRIN2B-231 NM_000834 exon9 c.C1923A p.I641I CAGGAAGATGACA . 288 17 217 2 . 0 0 0 0 0 PLEKHA5 54477 bcgsc.ca 37 12 19475524 19475524 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLEKHA5-227 NM_001256470 exon20 c.C2371A p.Q791K GCCATTCAGACAG . 210 20 173 2 . 17 17 0 0 0 ASUN 55726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 27066421 27066421 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_018164 exon14 c.G1774T p.E592X CCTGTTCATAATC . 100 28 93 0 . 50 46 4 0 0 KLHL42 57542 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 27933962 27933962 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_020782 exon1 c.C699A p.A233A GCTGGCCAACAAC . 165 40 124 1 . 9 5 4 0 0 LRRK2 120892 broad.mit.edu 37 12 40689345 40689345 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRRK2-533 NM_198578 exon23 c.G2995T p.A999S ATTGATGCCCTAA . 93 7 97 2 . 2 0 2 0 0 KANSL2 54934 broad.mit.edu;ucsc.edu 37 12 49075169 49075169 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_017822 exon2 c.G247T p.D83Y ACCCATCTTTCTT . 91 11 59 1 . 0 0 0 0 0 RND1 27289 broad.mit.edu 37 12 49254807 49254807 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RND1-228 NM_014470 exon4 c.G426T p.Q142H CTGCTTCTGGTGG . 122 15 93 2 . 0 0 0 0 0 ASIC1 41 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 50471033 50471033 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001256830 exon2 c.C698A p.S233X TCAACTCGGGCCG . 148 19 134 1 . 0 0 0 0 0 FAM186A 121006 bcgsc.ca 37 12 50727696 50727696 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM186A-68 NM_001145475 exon5 c.C6694A p.Q2232K TTACCTGGTTGAA . 238 9 164 2 . 0 0 0 0 0 KRT74 121391 broad.mit.edu;bcgsc.ca 37 12 52967318 52967318 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRT74-92 NM_175053 exon1 c.G244T p.G82X CCCCTCCATACCC . 98 6 68 0 . 0 0 0 0 0 KRT72 140807 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52992834 52992834 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRT72-96 NM_001146225 exon2 c.G489T p.L163L CAAGTCCAGCTGC . 119 31 103 1 . 0 0 0 0 0 KRT3 3850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53189266 53189266 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRT3-90 NM_057088 exon1 c.C561A p.I187I GGGGTCGATCTCC . 204 23 129 0 . 0 0 0 0 0 GPR84 53831 ucsc.edu 37 12 54756471 54756471 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR84-523 NM_020370 exon2 c.C1165A p.P389T TCCGGGGCCCTCT . 372 53 221 4 . 0 0 0 0 0 LACRT 90070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 55025610 55025610 + Missense_Mutation SNP C C A rs201410599 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LACRT-90 NM_033277 exon4 c.G267T p.E89D ACTTTTCTCCACT . 108 13 73 0 C|0.999;T|0.001 0 0 0 0 0 ESYT1 23344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56522216 56522216 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ESYT1-95 NM_015292 exon1 c.C113A p.S38Y CAGGTTCTGGGGG . 91 22 39 0 . 26 18 8 0 0 PAN2 9924 ucsc.edu;bcgsc.ca 37 12 56716450 56716450 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PAN2-702 NM_001127460 exon18 c.C2598A p.G866G CAGGCTGCCCCCT . 178 44 124 2 . 12 8 4 0 0 MIP 4284 broad.mit.edu;bcgsc.ca 37 12 56845152 56845152 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MIP-91 NM_012064 exon4 c.C704A p.S235Y AGGACAGACAGTC . 211 20 161 2 . 4 4 0 0 0 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 72017939 72017939 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFC3H1-138 NM_144982 exon23 c.G4451T p.R1484I TGAACTCTAAACA . 78 28 52 0 . 6 2 4 0 0 GLIPR1L1 256710 broad.mit.edu 37 12 75737704 75737704 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GLIPR1L1-90 NM_152779 exon2 c.G406T p.G136C GTCTGTGGCCATT . 120 3 74 0 . 0 0 0 0 0 GLIPR1L2 144321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 75804245 75804245 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GLIPR1L2-91 NM_152436 exon2 c.G266T p.R89I CTGCTAGAGCATG . 210 49 131 0 . 0 0 0 0 0 ZDHHC17 23390 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 77209691 77209691 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_015336 exon7 c.C663A p.D221E TGGTGACAAGTAT . 417 41 276 1 . 2 2 0 0 0 SLC6A15 55117 broad.mit.edu;bcgsc.ca 37 12 85266932 85266932 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC6A15-93 NM_182767 exon7 c.C1043A p.A348E AATGTTGCCAGGA . 216 13 168 2 . 0 0 0 0 0 DCN 1634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 91545457 91545457 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DCN-555 NM_001920 exon7 c.G859T p.G287W CCAGCCCACCAGG . 160 17 114 0 . 8 8 0 0 0 DCN 1634 broad.mit.edu 37 12 91546934 91546934 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DCN-555 NM_001920 exon6 c.G685T p.D229Y TGCCATCAAGATG . 146 16 129 2 . 8 8 0 0 0 PLEKHG7 440107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 93149662 93149662 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLEKHG7-23 NM_001004330 exon7 c.G552T p.E184D ACAGGAGATTATA . 142 45 84 0 . 0 0 0 0 0 NR2C1 7181 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 95434275 95434275 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NR2C1-187 NM_001032287 exon10 c.G1230T p.S410S AGGAATCGAAAGT . 241 21 221 0 . 13 12 1 0 0 USP44 84101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 95911959 95911959 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP44-658 NM_032147 exon6 c.G2110A p.D704N AGGTATCAGCGTC . 106 17 103 0 . 0 0 0 0 0 PRDM4 11108 broad.mit.edu;bcgsc.ca 37 12 108133237 108133237 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRDM4-154 NM_012406 exon11 c.G2016T p.K672N AAGATTCTTCTCC . 173 20 142 1 . 34 32 2 0 0 SART3 9733 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 108931880 108931880 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SART3-91 NM_014706 exon8 c.G1162C p.A388P CCATGGCCAAGAG . 183 41 85 1 . 18 8 10 0 0 ACACB 32 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 109660636 109660636 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACACB-98 NM_001093 exon25 c.G3711T p.E1237D CTACGAGCTGCGG . 135 47 142 1 . 11 6 5 0 0 TRPV4 59341 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 110230204 110230204 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPV4-94 NM_021625 exon12 c.C1855A p.L619I AGACGAGCAGGAA . 118 28 107 2 . 1 1 0 0 0 HVCN1 84329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 111098996 111098996 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HVCN1-91 NM_032369 exon4 c.G279T p.R93S CAGTTTCCTCAAC . 301 76 253 0 . 2 2 0 0 0 MAP1LC3B2 643246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117013934 117013934 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAP1LC3B2-68 NM_001085481 exon2 c.C187A p.L63I AGTGAGCTCATCA . 424 124 373 0 . 248 247 1 0 0 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 120567240 120567240 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GCN1L1-94 NM_006836 exon57 c.C7730A p.A2577E TTATTTGCCCACC . 112 14 131 0 . 68 54 14 0 0 SIRT4 23409 broad.mit.edu 37 12 120750304 120750304 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SIRT4-226 NM_012240 exon3 c.G543T p.L181L GGTGCTGCAAGAG . 78 5 56 0 . 14 14 0 0 0 MLXIP 22877 bcgsc.ca 37 12 122623075 122623075 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MLXIP-92 NM_014938 exon14 c.C2361A p.I787I GGAGATCGAGGAG . 196 16 138 2 . 15 14 1 0 0 SBNO1 55206 broad.mit.edu 37 12 123782680 123782680 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SBNO1-292 NM_001167856 exon30 c.G3884T p.C1295F ATTTCACAAACTA . 113 7 99 1 . 29 29 0 0 0 DNAH10 196385 broad.mit.edu;ucsc.edu 37 12 124256213 124256213 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DNAH10-95 NM_207437 exon3 c.G181T p.D61Y GAAATGGACAAAG . 89 10 98 2 . 0 0 0 0 0 DNAH10 196385 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124317840 124317840 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DNAH10-95 NM_207437 exon26 c.G4371T p.L1457L TTTTCTGCAAACT . 191 40 180 1 . 0 0 0 0 0 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 124399087 124399087 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DNAH10-95 NM_207437 exon60 c.G10210T p.E3404X GATGTTGAGATCA . 77 13 64 0 . 0 0 0 0 0 DHX37 57647 broad.mit.edu;bcgsc.ca 37 12 125448959 125448959 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DHX37-227 NM_032656 exon15 c.G2026T p.E676X CGGGCTCCGTCCG . 70 6 93 0 . 1 1 0 0 0 TMEM132C 92293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 129028583 129028583 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TMEM132C-68 NM_001136103 exon3 c.C1056A p.G352G GGTGGGCAGCGGC . 258 108 131 0 . 0 0 0 0 0 TMEM132D 121256 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 129559056 129559056 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TMEM132D-106 NM_133448 exon9 c.C2664A p.F888L GGCTGGGAAGCTG . 66 26 78 1 . 0 0 0 0 0 EP400NL 347918 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 132599038 132599038 + RNA SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . AGATGTGAATTCC . 115 42 119 0 . 0 0 0 0 0 PARP4 143 hgsc.bcm.edu;broad.mit.edu 37 13 25016806 25016806 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PARP4-94 NM_006437 exon29 c.G3465T p.L1155F AGATTTCAAGGTT . 105 6 116 0 . 15 15 0 0 0 ATP8A2 51761 broad.mit.edu 37 13 26411330 26411330 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ATP8A2-138 NM_016529 exon29 c.G2784T p.L928L CACTCTGGGAATC . 79 19 87 2 . 1 0 1 0 0 B3GALTL 145173 bcgsc.ca 37 13 31843387 31843387 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . B3GALTL-92 NM_194318 exon8 c.C633A p.S211S GAAATCCGACTTT . 33 32 42 2 . 1 1 0 0 0 PDS5B 23047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 33316808 33316808 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDS5B-94 NM_015032 exon23 c.G2555T p.R852I CCTTAAGATTGCT . 73 32 104 0 . 3 2 1 0 0 ENOX1 55068 ucsc.edu 37 13 43986176 43986176 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ENOX1-92 NM_017993 exon5 c.G84T p.L28F ACTCCCCAAACCA . 88 9 115 2 . 0 0 0 0 0 TPT1-AS1 100190939 bcgsc.ca 37 13 45964930 45964930 + RNA SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . AGCTGTCAGGTCA . 215 40 202 4 . 19 12 7 0 0 UTP14C 9724 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52604696 52604696 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UTP14C-138 NM_021645 exon2 c.G1756T p.E586X GATGAAGAGGAGA . 224 88 244 3 . 4 3 1 0 0 THSD1 55901 bcgsc.ca 37 13 52951587 52951587 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . THSD1-94 NM_018676 exon5 c.G2518T p.E840X TGGTTTCATCCTC . 317 32 406 4 . 4 4 0 0 0 PCDH9 5101 ucsc.edu;bcgsc.ca 37 13 67800034 67800034 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PCDH9-96 NM_203487 exon2 c.G2539T p.A847S TCTGAGCTGCTTT . 138 28 178 3 . 0 0 0 0 0 GPR183 1880 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99947317 99947317 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR183-522 NM_004951 exon2 c.G1083C p.K361N ATTTCACTTTCCA . 102 35 140 1 . 5 5 0 0 0 CCDC168 643677 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 103399003 103399003 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001146197 exon4 c.G4044T p.V1348V TTTCATCACTTTA . 81 15 59 0 . 0 0 0 0 0 ING1 3621 hgsc.bcm.edu 37 13 111368316 111368316 + Silent SNP C C T rs9555726 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ING1-515 NM_005537 exon1 c.C526T p.L176L GCATCTCTGCTGA . 10 10 0 0 C|0.372;T|0.628 0 0 0 0 0 CUL4A 8451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 113909353 113909353 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CUL4A-651 NM_001008895 exon18 c.G1945T p.E649X GAAGTGGAAGATG . 270 94 230 0 . 14 13 1 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 49 6 22 0 . 7 7 0 0 0 OR4K15 81127 broad.mit.edu 37 14 20443680 20443680 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR4K15-69 NM_001005486 exon1 c.G3T p.M1I ACCCATGCTCACT . 76 19 57 2 . 0 0 0 0 0 ZNF219 51222 hgsc.bcm.edu 37 14 21560753 21560758 + In_Frame_Del DEL GAGGCT GAGGCT - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 GAGGCT GAGGCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF219-90 NM_001102454 exon3 c.698_703del p.233_235del GGGGTGGAGGCTG . 42 19 1 0 . 0 0 0 0 0 CDH24 64403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 23521682 23521682 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDH24-90 NM_022478 exon8 c.G1363T p.G455C CCTCACCGAGCTC . 120 12 62 0 . 3 0 3 0 0 BCL2L2-PABPN1 100529063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23791464 23791464 + Silent SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001199864 exon4 c.G507A p.E169E GAACGAGGTAGAG . 240 51 168 0 . 135 91 44 0 0 TGM1 7051 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24731331 24731331 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TGM1-91 NM_000359 exon2 c.C228A p.G76G TCGAGTGCCAGAG . 153 42 120 1 . 0 0 0 0 0 KHNYN 23351 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 24901482 24901482 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KHNYN-93 NM_015299 exon3 c.C1015A p.R339R CAGTCCCGAGGAG . 162 11 131 0 . 15 15 0 0 0 AKAP6 9472 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 33291762 33291762 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKAP6-733 NM_004274 exon13 c.C4743A p.G1581G ATTGGGCATCTTT . 103 28 99 0 . 0 0 0 0 0 RALGAPA1 253959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 36191028 36191028 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RALGAPA1-138 NM_194301 exon16 c.C2132A p.S711X TCAACTGAAACTT . 94 18 65 0 . 1 1 0 0 0 DNAAF2 55172 hgsc.bcm.edu 37 14 50100683 50100683 + Silent SNP C C G rs2985686 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_018139 exon1 c.G1185C p.A395A GTCCTCCGCGCGA . 8 8 0 0 C|0.569;G|0.431 4 0 4 0 0 SOS2 6655 bcgsc.ca 37 14 50616832 50616832 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SOS2-849 NM_006939 exon14 c.G2278T p.E760X GCCATTCAATTGG . 223 57 176 4 . 12 12 0 0 0 NID2 22795 broad.mit.edu 37 14 52508850 52508850 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NID2-158 NM_007361 exon7 c.G1798T p.G600C CAGAGCCAGGTTT . 74 14 45 1 . 4 4 0 0 0 ERO1L 30001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 53110333 53110333 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ERO1L-90 NM_014584 exon16 c.G1362T p.V454V TTCTTTCACACTT . 43 10 48 0 . 77 66 11 0 0 FERMT2 10979 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 53386013 53386013 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FERMT2-68 NM_001135000 exon3 c.G219T p.L73L TGTCTTCAGAAGC . 158 54 138 1 . 0 0 0 0 0 PELI2 57161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 56755230 56755230 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PELI2-91 NM_021255 exon4 c.G385T p.A129S GACGAAGCCCAGA . 175 29 160 0 . 0 0 0 0 0 TMEM260 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 57103241 57103241 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_017799 exon15 c.C1794A p.F598L ACCGTTCTTCATC . 217 22 186 2 . 10 10 0 0 0 RTN1 6252 ucsc.edu;bcgsc.ca 37 14 60212795 60212795 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RTN1-516 NM_021136 exon2 c.G646T p.E216X TATCTTCCAGCTC . 155 59 129 3 . 0 0 0 0 0 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64580141 64580141 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SYNE2-164 NM_182914 exon66 c.G12692T p.R4231M AAACTAGGCCGGA . 83 24 66 0 . 1 1 0 0 0 ADAM21 8747 broad.mit.edu 37 14 70924812 70924812 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ADAM21-92 NM_003813 exon2 c.C596T p.S199F CAAAATCTGCTGG . 108 4 81 1 . 0 0 0 0 0 RBM25 58517 broad.mit.edu 37 14 73572607 73572608 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RBM25-91 NM_021239 exon11 c.1195_1196del p.399_399del CGGGAAAGAGAGA . 140 8 161 0 . 0 0 0 0 0 DLST 1743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 75359678 75359678 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DLST-227 NM_001933 exon8 c.C584A p.S195Y CTCCTTCTGGCAA . 103 15 103 0 . 0 0 0 0 0 BEGAIN 57596 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 101011394 101011394 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BEGAIN-68 NM_020836 exon4 c.C186A p.S62R GTAGTTGCTCTGA . 72 7 50 0 . 0 0 0 0 0 HSP90AA1 3320 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 102551693 102551693 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HSP90AA1-949 NM_001017963 exon5 c.G971T p.R324I TTTATTCTTCGTT . 192 58 154 1 . 194 137 57 0 0 SIVA1 10572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105222044 105222044 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SIVA1-514 NM_006427 exon2 c.C196A p.H66N GTCGTTCACCTGC . 117 33 95 0 . 185 127 58 0 0 BRF1 2972 broad.mit.edu;ucsc.edu 37 14 105688210 105688210 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BRF1-155 NM_001519 exon11 c.G1090T p.D364Y CTGTGTCCTCCTC . 83 4 77 0 . 17 14 3 0 0 HERC2 8924 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 28441707 28441707 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HERC2-234 NM_004667 exon51 c.G8020T p.A2674S CATTGGCACTGAA . 394 94 285 1 . 0 0 0 0 0 TJP1 7082 broad.mit.edu;ucsc.edu 37 15 30018654 30018654 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TJP1-95 NM_175610 exon18 c.G2341T p.G781C ACCAACCATCATT . 108 15 81 1 . 1 0 1 0 0 FAN1 22909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 31217483 31217483 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAN1-90 NM_014967 exon9 c.G2326T p.D776Y GTGCAAGATGTGA . 69 15 46 0 . 4 2 2 0 0 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 31342674 31342674 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPM1-94 NM_001252020 exon11 c.G1426T p.G476W CTTTCCCTTTCTT . 151 31 126 0 . 0 0 0 0 0 EMC4 51234 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 34517318 34517318 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_016454 exon1 c.G3T p.M1I TGCCATGACGGCC . 147 10 86 0 . 129 113 16 0 0 FAM98B 283742 broad.mit.edu;bcgsc.ca 37 15 38762452 38762452 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM98B-515 NM_001042429 exon4 c.C377A p.A126D TTCAAGCTTCACA . 151 6 105 0 . 11 10 1 0 0 RASGRP1 10125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 38808534 38808534 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RASGRP1-697 NM_001128602 exon6 c.C539A p.S180Y TTCCTGGACCAGT . 150 23 84 0 . 0 0 0 0 0 CHP1 11261 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 41523643 41523643 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_007236 exon1 c.C63A p.T21T GGAGACCGGCTGT . 203 56 118 1 . 0 0 0 0 0 TYRO3 7301 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 41861213 41861213 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TYRO3-1388 NM_006293 exon9 c.C1245A p.D415E TCATGACCGTGCA . 112 10 60 0 . 0 0 0 0 0 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 54825158 54825158 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UNC13C-51 NM_001080534 exon24 c.G5590T p.E1864X AGTTTCGAACTAA . 116 33 142 0 . 0 0 0 0 0 CGNL1 84952 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 57731629 57731629 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CGNL1-100 NM_001252335 exon3 c.G1432T p.E478X AGTCAGGAAAGTA . 171 24 137 1 . 0 0 0 0 0 VPS13C 54832 bcgsc.ca 37 15 62209759 62209759 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VPS13C-92 NM_020821 exon60 c.G7836T p.K2612N TTCTTCCTTCCAG . 184 15 163 2 . 3 2 1 0 0 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63017258 63017258 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TLN2-573 NM_015059 exon24 c.G3210T p.K1070N TGCCAAGATGGCA . 56 20 35 0 . 0 0 0 0 0 CLPX 10845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65443246 65443246 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CLPX-90 NM_006660 exon14 c.C1817A p.P606Q TTTGTTGGAGCCC . 37 16 40 0 . 0 0 0 0 0 SNAPC5 10302 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 66787699 66787699 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SNAPC5-90 NM_006049 exon2 c.C149A p.S50Y TGAGAAGACAGCA . 149 44 137 1 . 20 17 3 0 0 CD276 80381 broad.mit.edu 37 15 73994904 73994904 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CD276-91 NM_025240 exon3 c.G388T p.G130C GATTTCGGCAGCG . 149 17 70 2 . 112 107 5 0 0 CSK 1445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75091628 75091628 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CSK-510 NM_001127190 exon6 c.G258T p.K86N CGGCAAGATCACA . 92 31 78 0 . 31 27 4 0 0 SNUPN 10073 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75890858 75890858 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SNUPN-91 NM_001042581 exon9 c.G924T p.Q308H CATAATCTGCTGG . 98 9 109 1 . 43 33 10 0 0 IREB2 3658 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 78732221 78732221 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IREB2-90 NM_004136 exon2 c.A104G p.Y35C CCAAGTATGGTAA . 52 4 52 0 . 0 0 0 0 0 MESDC1 59274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81295513 81295513 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MESDC1-90 NM_022566 exon1 c.C901A p.L301I TGCGTGCTCCTGA . 72 25 27 0 . 28 15 13 0 0 AGBL1 123624 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86806035 86806035 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_152336 exon9 c.C858A p.N286K CGTGAACAAGCTG . 195 29 163 1 . 0 0 0 0 0 KIF7 374654 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 90190829 90190829 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KIF7-523 NM_198525 exon6 c.C1558A p.Q520K GCACCTGCAGTTT . 60 27 67 1 . 0 0 0 0 0 HAGHL 84264 hgsc.bcm.edu 37 16 778414 778414 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HAGHL-90 NM_032304 exon4 c.C387A p.A129A ACCCGCCCTGTTC . 32 9 9 0 . 0 0 0 0 0 PTX4 390667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 1537885 1537885 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PTX4-90 NM_001013658 exon2 c.C213A p.F71L GCTCCGGAACCGG . 192 25 141 0 . 0 0 0 0 0 CREBBP 1387 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3843582 3843582 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CREBBP-1807 NM_001079846 exon4 c.G1021T p.A341S CTGTTGCAATTGC . 116 34 130 1 . 3 2 1 0 0 RSL1D1 26156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 11940360 11940360 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RSL1D1-90 NM_015659 exon5 c.C633A p.C211X CTACCTGCAAGAA . 113 27 65 0 . 0 0 0 0 0 PDXDC1 23042 ucsc.edu;bcgsc.ca;mdanderson.org 37 16 15102644 15102644 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDXDC1-91 NM_015027 exon7 c.G588T p.L196F CGGCTTGCCCTTC . 254 33 255 3 . 0 0 0 0 0 RRN3 54700 broad.mit.edu 37 16 15188066 15188066 + Missense_Mutation SNP G G A rs200006712 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RRN3-91 NM_018427 exon1 c.C25T p.R9C GCAAACGCGTGTG . 220 7 179 0 G|0.997;A|0.003 1 1 0 0 0 ACSM3 6296 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 20787314 20787314 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACSM3-91 NM_005622 exon3 c.C373A p.L125M GTAATTCTGATTC . 134 12 100 0 . 125 121 4 0 0 GGA2 23062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23491135 23491135 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GGA2-91 NM_015044 exon11 c.G1080T p.Q360H CCCCATCTGCGCA . 117 26 97 0 . 60 43 17 0 0 IL21R 50615 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 27454345 27454345 + Missense_Mutation SNP C C A rs146177564 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IL21R-660 NM_181079 exon6 c.C481A p.R161S TCCTGGCGCTCAG . 221 50 175 2 C|1.000;T|0.000 1 0 1 0 0 KCTD13 253980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 29918291 29918291 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCTD13-90 NM_178863 exon6 c.G892T p.E298X TCTCTTCATCCTC . 147 21 110 0 . 51 45 6 0 0 GDPD3 79153 broad.mit.edu 37 16 30123477 30123477 + Silent SNP C C A rs150465018 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GDPD3-90 NM_024307 exon6 c.G549T p.S183S CATGACCGAGCTC . 123 20 88 2 C|1.000;T|0.000 1 1 0 0 0 CORO1A 11151 broad.mit.edu 37 16 30198031 30198031 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CORO1A-226 NM_001193333 exon4 c.G311T p.C104F AGGACTGCACAGT . 73 4 38 1 . 0 0 0 0 0 ZNF768 79724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30535865 30535865 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF768-90 NM_024671 exon2 c.G1596T p.Q532H GGTCCGCTGGTGG . 134 47 15 0 . 139 90 49 0 0 BCKDK 10295 broad.mit.edu;bcgsc.ca 37 16 31121421 31121421 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BCKDK-765 NM_005881 exon5 c.C399A p.F133L TGCCTTCCAGAAG . 196 8 168 0 . 137 134 3 0 0 ITGAM 3684 ucsc.edu;bcgsc.ca 37 16 31336693 31336693 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITGAM-226 NM_001145808 exon20 c.G2476T p.D826Y CCGCTTGACCTGT . 190 85 162 2 . 3 1 2 0 0 ZNF267 10308 hgsc.bcm.edu 37 16 31927495 31927495 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF267-138 NM_003414 exon4 c.A1925G p.N642S CCTTCAACTATAG . 99 5 102 0 . 11 11 0 0 0 IRX3 79191 hgsc.bcm.edu 37 16 54318528 54318528 + Missense_Mutation SNP A A G rs1450355 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IRX3-90 NM_024336 exon2 c.T1265C p.L422P GGGTGCAGGCGGG . 6 6 0 0 T|0.035;G|0.004 0 0 0 0 0 CCDC135 84229 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 57732903 57732903 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCDC135-90 NM_032269 exon3 c.C345A p.L115L GCCCCTCTTCCTG . 125 12 115 1 . 0 0 0 0 0 CNGB1 1258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 57935280 57935280 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CNGB1-137 NM_001297 exon29 c.G2952T p.L984L GTTGGGCAGGTAG . 143 16 88 0 . 0 0 0 0 0 LRRC29 26231 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67241849 67241849 + Missense_Mutation SNP A A T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRRC29-226 NM_001004055 exon5 c.T430A p.W144R GGGCCCAGCCCTT . 108 15 89 1 . 4 4 0 0 0 KCTD19 146212 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67333415 67333415 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCTD19-69 NM_001100915 exon6 c.C837A p.S279R CTCCAGGCTGGCT . 86 9 57 1 . 0 0 0 0 0 VAC14 55697 bcgsc.ca 37 16 70726795 70726795 + Silent SNP C C A rs2278983 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VAC14-227 NM_018052 exon18 c.G2115T p.P705P GCTCTGCGGCAGG . 133 5 59 0 A|0.318;C|0.681;T|0.000 76 76 0 0 0 HYDIN 54768 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 71209570 71209570 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HYDIN-92 NM_001198542 exon5 c.C537A p.H179Q CACTTTGTGGCCA . 124 8 97 0 . 1 0 1 0 0 RFWD3 55159 bcgsc.ca 37 16 74670456 74670456 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RFWD3-522 NM_018124 exon8 c.C1214A p.S405X TGATGTGACGTAA . 75 16 49 1 . 8 7 1 0 0 PKD1L2 114780 bcgsc.ca 37 16 81249935 81249935 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PKD1L2-92 NM_001076780 exon2 c.C378A p.D126E GCAGGTGTCAGGG . 166 67 126 3 . 0 0 0 0 0 FOXC2 2303 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 86601196 86601196 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FOXC2-226 NM_005251 exon1 c.C255A p.I85I GGCCATCCAGAAC . 415 124 312 1 . 1 1 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599696 88599697 + Frame_Shift_Del DEL GA GA - rs67549438 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFPM1-90 NM_153813 exon10 c.1330_1331del p.444_444del AGAGCGGAGCCTC . 17 11 1 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599697 88599705 + In_Frame_Del DEL AGCCTCTGG AGCCTCTGG - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 AGCCTCTGG AGCCTCTGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFPM1-90 NM_153813 exon10 c.1331_1339del p.444_447del GAGCGGAGCCTCT . 18 0 1 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599701 88599701 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFPM1-90 NM_153813 exon10 c.1335delT p.P445fs GGAGCCTCTGGCC . 17 12 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599703 88599705 + In_Frame_Del DEL TGG TGG - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 TGG TGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFPM1-90 NM_153813 exon10 c.1337_1339del p.446_447del AGCCTCTGGCCCA . 15 12 1 0 . 0 0 0 0 0 GLTPD2 388323 hgsc.bcm.edu 37 17 4693342 4693342 + Missense_Mutation SNP C C A rs35910358 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GLTPD2-68 NM_001014985 exon4 c.C627A p.D209E CCCGGACGCGGGC . 8 8 0 0 C|0.015;A|0.985 0 0 0 0 0 TP53 7157 hgsc.bcm.edu 37 17 7579521 7579521 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TP53-70225 NM_000546 exon4 c.G166T p.E56X GGTCTTCAGTGAA . 23 9 34 1 . 10 10 0 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7579722 7579722 + Splice_Site SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TP53-70225 NM_000546 exon4 c.75-1G>T . GGAAGTCTGAAAG . 57 21 42 0 . 4 0 4 0 0 ARHGAP44 9912 hgsc.bcm.edu;broad.mit.edu 37 17 12853032 12853032 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGAP44-90 NM_014859 exon12 c.G1040T p.W347L ATGAGTGGATCCA . 94 7 123 0 . 0 0 0 0 0 MAP2K3 5606 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 21215491 21215491 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAP2K3-790 NM_145109 exon10 c.G812T p.W271L AGTCCTGGGGGAC . 81 8 102 0 . 50 48 2 0 0 SARM1 23098 hgsc.bcm.edu 37 17 26699121 26699121 + Missense_Mutation SNP G G C rs7212814 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_015077 exon1 c.G68C p.R23P CACGGCGGGGCGC . 7 7 0 0 G|0.001;C|0.999 2 0 2 0 0 BLMH 642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 28601155 28601155 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BLMH-91 NM_000386 exon7 c.C706T p.R236X TGTCTCGATATTC . 55 12 75 0 . 9 9 0 0 0 RAB11FIP4 84440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29848225 29848225 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RAB11FIP4-91 NM_032932 exon5 c.C605A p.S202Y ACCTTTCTACACA . 112 12 141 0 . 1 1 0 0 0 RAB11FIP4 84440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29848320 29848320 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RAB11FIP4-91 NM_032932 exon5 c.C700A p.P234T CCTTGCCCCGATG . 177 79 205 0 . 1 0 1 0 0 SLFN14 342618 broad.mit.edu;bcgsc.ca 37 17 33880003 33880003 + Silent SNP C C G rs28498569 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLFN14-1 NM_001129820 exon3 c.G1650C p.V550V GGAGACCACCACC . 60 7 75 0 C|0.765;G|0.235 0 0 0 0 0 GAS2L2 246176 broad.mit.edu;ucsc.edu 37 17 34072812 34072812 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GAS2L2-227 NM_139285 exon6 c.C1704A p.V568V TGCCATGACCTGG . 73 7 76 1 . 0 0 0 0 0 ACACA 31 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 35468526 35468526 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACACA-154 NM_198834 exon52 c.G6505T p.D2169Y CCAGATCCTTTCT . 65 8 92 0 . 15 15 0 0 0 KRT39 390792 bcgsc.ca 37 17 39116728 39116728 + Missense_Mutation SNP G G A rs17843021 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_213656 exon6 c.C1022T p.T341M GTCTCCGTTAGGA . 83 5 92 0 G|0.868;A|0.132 0 0 0 0 0 KRT40 125115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39140279 39140279 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_182497 exon3 c.G247T p.G83W ACACCCCATCCTC . 125 54 155 0 . 0 0 0 0 0 KRTAP1-3 81850 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39190809 39190809 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_030966 exon1 c.G265T p.G89C TGCCACCACCAAT . 91 27 121 1 . 0 0 0 0 0 KRTAP4-3 85290 bcgsc.ca 37 17 39324355 39324355 + Missense_Mutation SNP A A T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRTAP4-3-22 NM_033187 exon1 c.T70A p.C24S GGCAGCAGCTCTC . 164 22 168 0 . 0 0 0 0 0 KRT33B 3884 broad.mit.edu 37 17 39520197 39520197 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRT33B-90 NM_002279 exon7 c.C1106A p.S369Y GGGTTGGAGGGCA . 103 3 137 0 . 0 0 0 0 0 RND2 8153 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 41180515 41180515 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RND2-227 NM_005440 exon5 c.C502A p.R168S TCTGAGCGCAGCG . 107 9 152 0 . 5 5 0 0 0 FMNL1 752 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 43322367 43322367 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FMNL1-91 NM_005892 exon21 c.G2620T p.D874Y TCGACTGATCGCA . 97 41 105 2 . 2 1 1 0 0 NPEPPS 9520 broad.mit.edu;bcgsc.ca 37 17 45668234 45668234 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NPEPPS-90 NM_006310 exon10 c.G1247T p.S416I ATAACAGCCATCC . 217 17 287 0 . 45 39 6 0 0 SNF8 11267 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 47007866 47007866 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SNF8-90 NM_007241 exon8 c.G748T p.A250S CCTCAGCTGTAAT . 20 6 21 0 . 42 38 4 0 0 PRKAR1A 5573 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 66526420 66526420 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRKAR1A-1141 NM_212472 exon11 c.G976T p.E326X CCAGGTGAAATTG . 112 29 139 1 . 0 0 0 0 0 MAP2K6 5608 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 67515498 67515498 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAP2K6-1404 NM_002758 exon5 c.G291T p.L97L GCTACTGATGGAT . 189 89 252 3 . 0 0 0 0 0 KCNJ2 3759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 68171641 68171641 + Missense_Mutation SNP G G T rs199473380 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCNJ2-90 NM_000891 exon2 c.G461T p.C154F ATGAATGCCCAAT . 87 36 105 0 . 0 0 0 0 0 SSTR2 6752 ucsc.edu;bcgsc.ca 37 17 71166384 71166384 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SSTR2-522 NM_001050 exon2 c.C926A p.P309H CCAACCCTATCCT . 135 54 178 2 . 0 0 0 0 0 MRPS7 51081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73258729 73258729 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MRPS7-90 NM_015971 exon2 c.G235T p.A79S GCTCCAGCAGGGA . 50 19 82 0 . 43 24 19 0 0 MRPL38 64978 broad.mit.edu;bcgsc.ca 37 17 73898152 73898152 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MRPL38-46 NM_032478 exon3 c.C331A p.Q111K GCTCCTGGATGGC . 110 22 165 2 . 45 42 3 0 0 AFMID 125061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76202078 76202078 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AFMID-136 NM_001145526 exon10 c.G847T p.D283Y GATGTGGACCACT . 83 21 106 0 . 14 12 2 0 0 LOC100653515 0 broad.mit.edu 37 17 76886822 76886822 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001243540 exon3 c.G1764T p.M588I TCGGATCATCTGA . 52 10 57 2 . 0 0 0 0 0 TBC1D16 125058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 77984098 77984098 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TBC1D16-90 NM_019020 exon3 c.G640T p.E214X ACAGTTCCAAAGA . 152 75 174 0 . 1 0 1 0 0 FSCN2 25794 hgsc.bcm.edu 37 17 79504073 79504073 + Silent SNP C C T rs143561119 by1000genomes TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001077182 exon5 c.C1518T p.D506D TGCCGACGCCCCG . 7 6 0 0 C|0.964;T|0.036 0 0 0 0 0 TMEM200C 645369 hgsc.bcm.edu 37 18 5890571 5890571 + Missense_Mutation SNP T T C rs7506026 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001080209 exon1 c.A1492G p.S498G GAGGGCTGGAGTC . 9 7 0 0 T|0.941;C|0.059 0 0 0 0 0 TWSG1 57045 broad.mit.edu 37 18 9399488 9399488 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TWSG1-92 NM_020648 exon5 c.G635T p.G212V ACTATGGTAGTAA . 62 4 92 0 . 5 5 0 0 0 ANKRD30B 374860 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 14748544 14748544 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANKRD30B-24 NM_001145029 exon1 c.C126A p.I42I GAAGATCCATACA . 79 51 100 1 . 0 0 0 0 0 ROCK1 6093 broad.mit.edu 37 18 18586509 18586509 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ROCK1-1026 NM_005406 exon16 c.G1688T p.R563I CTCAATCTTACAG . 60 9 61 2 . 6 3 3 0 0 DSC3 1825 broad.mit.edu 37 18 28610987 28610987 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DSC3-94 NM_024423 exon3 c.G306T p.R102S CTGTTTCCTTTTG . 99 4 95 1 . 0 0 0 0 0 FHOD3 80206 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 34320707 34320707 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FHOD3-139 NM_025135 exon18 c.C3140A p.A1047E GCAGTGCAGAGCA . 160 35 167 2 . 27 24 3 0 0 SLC14A2 8170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 43221304 43221304 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC14A2-93 NM_001242692 exon9 c.C1122A p.I374I CCTCATCTGTGGT . 79 30 102 0 . 0 0 0 0 0 SKA1 220134 ucsc.edu 37 18 47908517 47908517 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SKA1-90 NM_001039535 exon4 c.G232T p.E78X TCTCTTGAAGAAG . 171 16 128 3 . 2 2 0 0 0 ALPK2 115701 broad.mit.edu 37 18 56171296 56171296 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ALPK2-765 NM_052947 exon11 c.G6114T p.V2038V ATACTTCACAAAT . 86 4 114 1 . 0 0 0 0 0 TNFRSF11A 8792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 60036497 60036497 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TNFRSF11A-659 NM_003839 exon9 c.C1347G p.C449W AGGCTGCCGGAAC . 42 35 48 0 . 0 0 0 0 0 CCDC102B 79839 broad.mit.edu 37 18 66505987 66505987 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCDC102B-93 NM_001093729 exon5 c.G651T p.M217I GGAGATGAAGCCC . 101 15 81 3 . 0 0 0 0 0 NFATC1 4772 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 77246918 77246918 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NFATC1-290 NM_172387 exon9 c.C2724A p.D908E GTTGGACCAGTTG . 98 6 61 0 . 0 0 0 0 0 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 1047284 1047284 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ABCA7-98 NM_019112 exon15 c.C1974A p.A658A TGCGGCCTGCGGC . 60 9 34 0 . 1 1 0 0 0 ADAT3 113179 hgsc.bcm.edu 37 19 1912817 1912817 + Silent SNP C C T rs35870594 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ADAT3-154 NM_138422 exon2 c.C771T p.Y257Y CACCTACGACTTC . 5 4 0 0 C|0.899;T|0.101 2 1 1 0 0 LMNB2 84823 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 2434856 2434856 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LMNB2-290 NM_032737 exon6 c.G911A p.R304H TCCTCGCGAGCCG . 105 26 41 0 . 12 10 2 0 0 PIP5K1C 23396 broad.mit.edu 37 19 3644184 3644184 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PIP5K1C-267 NM_001195733 exon12 c.C1411A p.P471T CGGTGGGCCCCAG . 129 6 33 1 . 13 12 1 0 0 TICAM1 148022 bcgsc.ca 37 19 4817397 4817397 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TICAM1-153 NM_182919 exon2 c.G993T p.Q331H TGGCGTCTGGTCT . 96 42 62 2 . 2 2 0 0 0 ARHGEF18 23370 broad.mit.edu 37 19 7516148 7516148 + Silent SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGEF18-228 NM_001130955 exon6 c.G1287A p.T429T GAACACGGAAGGT . 164 5 117 0 . 0 0 0 0 0 STXBP2 6813 broad.mit.edu;bcgsc.ca 37 19 7708095 7708095 + Silent SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . STXBP2-91 NM_001272034 exon13 c.C1104T p.F368F GCACTTCAAGGGC . 86 26 52 1 . 44 36 8 0 0 LRRC8E 80131 broad.mit.edu 37 19 7964190 7964190 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRRC8E-92 NM_001268284 exon4 c.G783T p.L261L GGTGCTGAAAGTG . 257 10 199 1 . 5 2 3 0 0 CDC37 11140 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10503780 10503780 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDC37-522 NM_007065 exon7 c.C963A p.I321I CTTGCTGATGGCG . 70 18 56 1 . 375 297 78 0 0 PDE4A 5141 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10574513 10574513 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDE4A-523 NM_001111307 exon14 c.C1788A p.T596T CCCCACCAAGCCG . 324 91 249 4 . 0 0 0 0 0 LPPR2 0 broad.mit.edu 37 19 11472132 11472132 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LPPR2-153 NM_022737 exon6 c.G631T p.A211S GATGCGGCCCTCT . 118 7 15 0 . 17 15 2 0 0 CNN1 1264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11657510 11657510 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CNN1-90 NM_001299 exon3 c.C206A p.P69Q TGCAGCCAGGCTC . 138 45 69 0 . 10 10 0 0 0 CACNA1A 773 hgsc.bcm.edu 37 19 13409696 13409696 + Missense_Mutation SNP C C G rs16022 bycluster;byfrequency;by1000genomes TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CACNA1A-67 NM_001127221 exon19 c.G2754C p.E918D CTCGCCCTCCCAG . 13 5 0 0 C|0.363;G|0.637 0 0 0 0 0 PALM3 342979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14169968 14169968 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PALM3-24 NM_001145028 exon1 c.G4T p.A2S TCTCCGCCATGGG . 111 7 84 0 . 0 0 0 0 0 ZNF333 84449 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 14815966 14815966 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF333-92 NM_032433 exon6 c.G407T p.W136L CGCCTTGGTCTCT . 94 28 53 2 . 2 1 1 0 0 AKAP8 10270 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15482785 15482785 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKAP8-290 NM_005858 exon7 c.C1016A p.S339X TCTCCTGAGCGGA . 149 18 110 1 . 13 12 1 0 0 AKAP8L 26993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15507978 15507978 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKAP8L-1 NM_014371 exon12 c.C1519A p.H507N GGTTGTGATCCAT . 188 22 141 0 . 203 174 29 0 0 CYP4F12 66002 broad.mit.edu;ucsc.edu 37 19 15789193 15789193 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP4F12-95 NM_023944 exon3 c.C321A p.I107I CACCATCCGGTCT . 188 19 126 2 . 0 0 0 0 0 CYP4F2 8529 ucsc.edu;bcgsc.ca 37 19 16000335 16000335 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP4F2-92 NM_001082 exon7 c.G816T p.Q272H CCGCTCCTGGATG . 398 110 298 3 . 0 0 0 0 0 ANKLE1 126549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 17394631 17394631 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_152363 exon5 c.G1058T p.C353F GCCCTTGCCGGCA . 86 10 81 0 . 0 0 0 0 0 SLC27A1 376497 ucsc.edu;bcgsc.ca 37 19 17599870 17599870 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC27A1-226 NM_198580 exon6 c.C940T p.R314C GTCCTCCGCAAGA . 332 151 212 10 . 7 2 5 0 0 FAM129C 199786 broad.mit.edu 37 19 17648324 17648324 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM129C-90 NM_001098524 exon6 c.G660T p.L220L GGCCCTGCAGGGT . 37 4 20 0 . 0 0 0 0 0 MAST3 23031 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 18241370 18241370 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAST3-502 NM_015016 exon13 c.G1203T p.Q401H CAAACAGAACTTG . 232 25 196 1 . 2 2 0 0 0 ZNF676 163223 hgsc.bcm.edu;broad.mit.edu 37 19 22363229 22363229 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF676-90 NM_001001411 exon3 c.C1290A p.F430L CCAGCTGAAGGCT . 60 8 29 0 . 0 0 0 0 0 ZNF254 9534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 24309378 24309378 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF254-90 NM_203282 exon4 c.C576A p.C192X ATTTTGCATGCTT . 111 10 66 0 . 8 7 1 0 0 LRP3 4037 hgsc.bcm.edu;broad.mit.edu 37 19 33696766 33696766 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRP3-92 NM_002333 exon5 c.G1090T p.V364L TACCAGGTGAAGG . 83 6 35 0 . 27 19 8 0 0 FFAR3 2865 broad.mit.edu;mdanderson.org 37 19 35850698 35850698 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FFAR3-90 NM_005304 exon2 c.G906T p.Q302H GTGGCAGCAGGAG . 923 106 645 1 . 0 0 0 0 0 ZFP14 57677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36831144 36831144 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZFP14-91 NM_020917 exon5 c.G1584T p.K528N ATGAATCTTCTGA . 102 16 83 0 . 4 4 0 0 0 WDR87 83889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38378662 38378662 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_031951 exon6 c.G5532T p.K1844N CAGATTCTTCTTT . 104 23 81 0 . 0 0 0 0 0 SIPA1L3 23094 hgsc.bcm.edu 37 19 38573333 38573333 + Silent SNP C C T rs61729132 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SIPA1L3-91 NM_015073 exon3 c.C1128T p.S376S CGCTTCCGCCGCC . 65 35 3 0 C|0.998;T|0.002 1 1 0 0 0 CATSPERG 57828 bcgsc.ca;mdanderson.org 37 19 38858328 38858328 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CATSPERG-92 NM_021185 exon25 c.C2842A p.L948M TATGTTCTGCTGG . 188 78 101 4 . 0 0 0 0 0 FBXO17 115290 hgsc.bcm.edu 37 19 39440918 39440918 + Silent SNP T T C rs2304117 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FBXO17-226 NM_148169 exon2 c.A69G p.P23P CAGGGATGGGTCC . 20 9 0 0 T|0.545;C|0.455 0 0 0 0 0 CYP2B6 1555 broad.mit.edu;ucsc.edu 37 19 41518259 41518259 + Missense_Mutation SNP C C A rs138030127 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP2B6-92 NM_000767 exon7 c.C1021A p.H341N GAGCTTCATGACC . 126 16 74 2 C|0.999;G|0.001 0 0 0 0 0 ARHGEF1 9138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42410903 42410903 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGEF1-293 NM_199002 exon28 c.G2749T p.G917W CAGCTTGGGGGGA . 137 31 79 0 . 37 30 7 0 0 CKM 1158 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45822926 45822926 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CKM-91 NM_001824 exon2 c.C46A p.P16T CCTCAGGCTTGTA . 372 106 283 1 . 0 0 0 0 0 PTGIR 5739 hgsc.bcm.edu 37 19 47127324 47127324 + Silent SNP C C G rs2229128 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PTGIR-522 NM_000960 exon2 c.G159C p.V53V TCCGGTCACCAGC . 16 16 1 0 C|0.254;G|0.746 2 0 2 0 0 RASIP1 54922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49227597 49227597 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RASIP1-228 NM_017805 exon10 c.C2541A p.L847L CACCTTGAGCAGG . 189 51 137 0 . 1 0 1 0 0 KCNA7 3743 hgsc.bcm.edu 37 19 49575618 49575618 + Silent SNP A A G rs71352730 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCNA7-90 NM_031886 exon1 c.T225C p.G75G CCGCCCACCGGAC . 32 14 4 0 A|0.868;G|0.132 0 0 0 0 0 SLC6A16 28968 broad.mit.edu;bcgsc.ca 37 19 49793931 49793931 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC6A16-94 NM_014037 exon11 c.C1872A p.I624I AAAGATGATTAGC . 193 14 161 1 . 0 0 0 0 0 SCAF1 58506 broad.mit.edu;bcgsc.ca 37 19 50157655 50157655 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCAF1-68 NM_021228 exon8 c.G3366T p.A1122A CCGAGCGAAGGCC . 230 10 176 0 . 110 104 5 1 0 ASPDH 554235 hgsc.bcm.edu 37 19 51015404 51015404 + Missense_Mutation SNP T T C rs12977172 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ASPDH-90 NM_001114598 exon6 c.A797G p.Q266R AGGCTCTGCCAGA . 19 19 0 0 T|0.228;C|0.772 0 0 0 0 0 VSIG10L 147645 broad.mit.edu 37 19 51844464 51844464 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001163922 exon2 c.G838T p.E280X TGACCTCAGCCGT . 143 4 86 0 . 0 0 0 0 0 NKG7 4818 hgsc.bcm.edu;broad.mit.edu 37 19 51875493 51875493 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NKG7-90 NM_005601 exon2 c.C226A p.L76M GGACCAGGAAGCT . 98 5 80 0 . 1 1 0 0 0 ZNF880 400713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52888417 52888417 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001145434 exon4 c.C1584A p.V528V CAAGGTCTTCAGC . 180 17 146 0 . 23 21 2 0 0 CNOT3 4849 ucsc.edu;bcgsc.ca 37 19 54656063 54656063 + Splice_Site SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CNOT3-93 NM_014516 exon14 c.1705+1G>A . AGCGAGGTGAGGG . 268 33 167 3 . 3 1 2 0 0 RPS9 6203 broad.mit.edu 37 19 54705408 54705408 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RPS9-153 NM_001013 exon3 c.G151T p.A51S ACCCTGGCCAAGA . 107 4 56 0 . 1906 1903 0 1 2 LILRA3 11026 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54803031 54803031 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LILRA3-91 NM_006865 exon4 c.G646T p.G216W GGAGCCCCAGGAG . 228 29 174 1 . 2 2 0 0 0 SYT5 6861 hgsc.bcm.edu 37 19 55684927 55684927 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SYT5-90 NM_003180 exon9 c.C1086A p.A362A CGGGTTGGCCAGC . 14 5 1 0 . 0 0 0 0 0 SSC5D 284297 broad.mit.edu;bcgsc.ca 37 19 56024505 56024505 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001144950 exon13 c.C2913A p.G971G CCCAGGCAGTCCT . 204 12 101 1 . 0 0 0 0 0 NLRP13 126204 broad.mit.edu 37 19 56410249 56410249 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NLRP13-211 NM_176810 exon10 c.C2844A p.L948L ATGGCTGAGGGCA . 125 5 70 0 . 0 0 0 0 0 ZNF787 126208 hgsc.bcm.edu 37 19 56599438 56599440 + In_Frame_Del DEL TCG TCG - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 TCG TCG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF787-69 NM_001002836 exon3 c.1101_1103del p.367_368del GCGGCCTCGTCGT . 15 12 0 0 . 0 0 0 0 0 ZNF667 63934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56952598 56952598 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF667-91 NM_022103 exon5 c.G1766T p.G589V GCCTTCCCACATT . 111 27 65 0 . 13 7 6 0 0 ZNF835 90485 hgsc.bcm.edu 37 19 57175988 57175988 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF835-72 NM_001005850 exon2 c.G579T p.P193P GCGGTGCGGCTTC . 55 33 2 0 . 0 0 0 0 0 ZNF419 79744 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 58004403 58004403 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF419-90 NM_001098491 exon5 c.C481A p.Q161K TCCTTGCAAAGCA . 448 43 291 0 . 8 6 2 0 0 ZNF814 730051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58384936 58384936 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001144989 exon3 c.G1822T p.E608X CACATTCTCCACA . 116 31 100 0 . 5 2 3 0 0 ZNF814 730051 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58385748 58385748 + Missense_Mutation SNP G G A rs145250945 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001144989 exon3 c.C1010T p.A337V AAGCTAGCATATT . 218 88 91 0 . 2 2 0 0 0 ZNF814 730051 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58385762 58385762 + Silent SNP C C G rs199732634 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001144989 exon3 c.G996C p.S332S GCTAAACGATTTC . 173 55 81 0 . 1 1 0 0 0 C19orf18 147685 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58485719 58485719 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C19orf18-91 NM_152474 exon1 c.G82T p.D28Y GTCCATCTGCATA . 138 32 102 1 . 0 0 0 0 0 RPS5 6193 broad.mit.edu;bcgsc.ca 37 19 58905869 58905869 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RPS5-90 NM_001009 exon5 c.C453A p.I151I GGCCATCTGGCTG . 247 15 203 1 . 2 2 0 0 0 ZNF584 201514 bcgsc.ca 37 19 58929136 58929136 + Missense_Mutation SNP G G T rs3764534 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF584-90 NM_173548 exon4 c.G1251T p.K417N TGGGAAGGTCGTT . 258 24 188 1 G|0.453;A|0.547 44 39 5 0 0 C2orf50 130813 bcgsc.ca 37 2 11284210 11284210 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C2orf50-90 NM_182500 exon3 c.G462T p.K154N GAAGAAGCTGGAG . 172 33 218 4 . 0 0 0 0 0 AGBL5 60509 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27290394 27290394 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AGBL5-154 NM_021831 exon12 c.C2122A p.Q708K CAGCAGCAGCCCC . 102 32 118 1 . 5 2 3 0 0 CRIM1 51232 hgsc.bcm.edu;broad.mit.edu 37 2 36583544 36583544 + Missense_Mutation SNP T T G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CRIM1-118 NM_016441 exon1 c.T109G p.C37G CTGGTCTGCCTGC . 53 8 14 0 . 1 1 0 0 0 HEATR5B 54497 broad.mit.edu 37 2 37215999 37215999 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HEATR5B-142 NM_019024 exon35 c.C5701A p.Q1901K TGGCTTGAACCTA . 33 6 53 2 . 0 0 0 0 0 SLC8A1 6546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 40657111 40657111 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC8A1-93 NM_001252624 exon1 c.G310T p.E104X TGACTTCTATAGA . 60 32 60 0 . 0 0 0 0 0 ASPRV1 151516 ucsc.edu;bcgsc.ca 37 2 70188113 70188113 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ASPRV1-69 NM_152792 exon1 c.G708T p.L236L GGGCTGCAGGGTG . 123 21 158 2 . 4 4 0 0 0 ANKRD53 79998 hgsc.bcm.edu 37 2 71206267 71206267 + Missense_Mutation SNP G G A rs57527165 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANKRD53-90 NM_001115116 exon2 c.G211A p.A71T GCGCAGGCGACTG . 8 7 0 0 G|0.893;A|0.107 0 0 0 0 0 SNRNP200 23020 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 96948949 96948949 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SNRNP200-162 NM_014014 exon34 c.C4905A p.L1635L GCTGAAGAGCTGC . 68 22 74 0 . 0 0 0 0 0 IL1RL1 9173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 102964457 102964457 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IL1RL1-517 NM_016232 exon9 c.G1023T p.M341I TTTAATGCTAATC . 73 12 81 0 . 0 0 0 0 0 MRPS9 64965 broad.mit.edu 37 2 105654631 105654631 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MRPS9-90 NM_182640 exon1 c.G81T p.K27N CCGGAAGCAAGGC . 113 23 108 2 . 9 6 3 0 0 TGFBRAP1 9392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 105886085 105886085 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TGFBRAP1-91 NM_004257 exon11 c.C2050A p.H684N GGATATGCAGCGC . 58 30 56 0 . 7 2 5 0 0 SLC5A7 60482 ucsc.edu;bcgsc.ca 37 2 108609540 108609540 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC5A7-93 NM_021815 exon4 c.G405T p.L135L TGCACTGATGGGA . 141 65 181 3 . 0 0 0 0 0 GCC2 9648 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 109087646 109087646 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GCC2-91 NM_181453 exon6 c.G1861T p.E621X AGGGAAGAAAGAT . 150 18 188 1 . 2 2 0 0 0 SOWAHC 65124 hgsc.bcm.edu 37 2 110372192 110372192 + Silent SNP A A G rs6594048 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_023016 exon1 c.A126G p.L42L CGCCCTAGGCGGC . 8 8 0 0 A|0.029;G|0.971 0 0 0 0 0 MERTK 10461 ucsc.edu;bcgsc.ca 37 2 112740485 112740485 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MERTK-1463 NM_006343 exon8 c.G1211T p.R404I ACATCAGATGGAT . 140 69 191 2 . 17 4 13 0 0 WDR33 55339 broad.mit.edu 37 2 128477187 128477187 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WDR33-90 NM_018383 exon16 c.C2412A p.G804G CGGGTGGCCCATA . 24 3 26 0 . 6 5 1 0 0 AMMECR1L 83607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128631584 128631584 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AMMECR1L-90 NM_031445 exon3 c.C225A p.P75P TGTGATGGGAGAG . 122 24 144 0 . 4 2 2 0 0 CCDC74B 91409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 130898834 130898834 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCDC74B-90 NM_207310 exon4 c.C580A p.Q194K AATCTTGCTTGTT . 83 32 103 0 . 99 99 0 0 0 NEB 4703 bcgsc.ca 37 2 152515607 152515607 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NEB-145 NM_004543 exon47 c.C6047A p.A2016E GCCTTTGCCAAAA . 74 5 111 0 . 0 0 0 0 0 SCN2A 6326 broad.mit.edu;bcgsc.ca 37 2 166166936 166166936 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCN2A-142 NM_001040143 exon6 c.G801T p.L267F AGGATTGCAGTTG . 88 6 133 1 . 0 0 0 0 0 SCN9A 6335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 167129186 167129186 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCN9A-181 NM_002977 exon17 c.G3041T p.R1014I GCTTGTCTTATCT . 37 6 38 0 . 0 0 0 0 0 DHRS9 10170 bcgsc.ca 37 2 169939886 169939886 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DHRS9-90 NM_005771 exon6 c.C361A p.P121T CTGGCTCCCACTG . 118 53 164 5 . 0 0 0 0 0 DCAF17 80067 ucsc.edu;bcgsc.ca 37 2 172330394 172330394 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DCAF17-90 NM_025000 exon10 c.G1000T p.E334X ATCCAAGAAATGG . 97 39 135 5 . 0 0 0 0 0 ITGA6 3655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 173338941 173338941 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITGA6-227 NM_000210 exon6 c.C934A p.L312M GAAGGTCTGGCCT . 117 62 152 0 . 1 1 0 0 0 WIPF1 7456 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 175427307 175427307 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WIPF1-92 NM_003387 exon8 c.G1480T p.G494C GAGCACCCCTTTC . 147 84 173 0 . 1 1 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179477034 179477034 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTN-636 NM_001267550 exon266 c.G50218T p.E16740X AGTCCTCAATTTC . 89 20 133 0 . 0 0 0 0 0 TTN 7273 bcgsc.ca 37 2 179482553 179482553 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTN-636 NM_001267550 exon253 c.G47525T p.G15842V GGTTTTCCAACTC . 286 59 421 5 . 0 0 0 0 0 ITGA4 3676 broad.mit.edu;bcgsc.ca 37 2 182360586 182360586 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITGA4-230 NM_000885 exon14 c.G1462T p.E488X TGTGTTGAAAATG . 212 9 273 0 . 0 0 0 0 0 ITGA4 3676 broad.mit.edu;bcgsc.ca 37 2 182399023 182399023 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITGA4-230 NM_000885 exon26 c.G2809T p.E937X AAGTTTGAAATAA . 258 19 331 1 . 1 1 0 0 0 ZNF804A 91752 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 185803043 185803043 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF804A-163 NM_194250 exon4 c.G2920T p.E974X CATTATGAACTGG . 103 24 112 1 . 0 0 0 0 0 CALCRL 10203 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 188250272 188250272 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CALCRL-523 NM_001271751 exon3 c.G51T p.M17I GCTTACCATAAAA . 95 45 137 2 . 0 0 0 0 0 COL5A2 1290 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 189917495 189917495 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL5A2-92 NM_000393 exon40 c.C2695A p.R899R TTCCTCGACCACC . 163 80 202 1 . 3 3 0 0 0 CCDC150 284992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 197541324 197541324 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001080539 exon12 c.G1309T p.D437Y GCACAGGATGCTG . 172 74 211 0 . 0 0 0 0 0 SGOL2 151246 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201397779 201397779 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SGOL2-94 NM_001160046 exon2 c.G81T p.K27N TTCAAAGACTACT . 120 49 191 1 . 0 0 0 0 0 CFLAR 8837 ucsc.edu;bcgsc.ca 37 2 201994606 201994606 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CFLAR-227 NM_001202516 exon2 c.C18A p.I6I AGTCATCCATCAG . 159 80 160 3 . 6 4 2 0 0 INO80D 54891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 206869265 206869265 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . INO80D-91 NM_017759 exon11 c.C2911A p.Q971K GGAGTTGCTGCTT . 99 10 131 0 . 0 0 0 0 0 ZDBF2 57683 broad.mit.edu 37 2 207174885 207174885 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZDBF2-3 NM_020923 exon5 c.5633delG p.W1878fs TTACCTGGGCTGA . 76 10 89 0 . 0 0 0 0 0 KLF7 8609 bcgsc.ca 37 2 207988945 207988945 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KLF7-91 NM_003709 exon2 c.G286T p.D96Y AGATGTCCACTGC . 165 53 172 6 . 2 1 1 0 0 TTLL4 9654 broad.mit.edu 37 2 219602615 219602615 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTLL4-93 NM_014640 exon3 c.G216T p.L72F CCTCTTGGGCGTC . 153 4 195 0 . 2 2 0 0 0 ACSL3 2181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 223773830 223773830 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACSL3-228 NM_203372 exon3 c.G340T p.E114X AATGAGGAAGATG . 45 11 66 0 . 13 13 0 0 0 DAW1 164781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 228770995 228770995 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_178821 exon9 c.G799A p.A267T AGCAGTGCCTCAT . 36 5 65 0 . 0 0 0 0 0 SP140 11262 ucsc.edu;bcgsc.ca 37 2 231155258 231155258 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SP140-90 NM_007237 exon19 c.C1804A p.H602N ATTTTACATAAGA . 110 20 162 3 . 1 1 0 0 0 EIF4E2 9470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 233431658 233431658 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EIF4E2-90 NM_004846 exon5 c.G495T p.E165D GGAGGAGATCTGT . 65 36 82 0 . 51 22 29 0 0 DGKD 8527 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 234344974 234344974 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DGKD-676 NM_152879 exon7 c.C706A p.H236N ATGCCCCACCAGT . 126 47 123 1 . 0 0 0 0 0 UGT1A3 54659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234638397 234638397 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UGT1A3-24 NM_019093 exon1 c.C625A p.Q209K TTCATGCAAAGGG . 215 50 284 0 . 0 0 0 0 0 COL6A3 1293 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 238275811 238275811 + Silent SNP G G A rs140516220 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL6A3-526 NM_004369 exon11 c.C5019T p.G1673G GGAGTCGCCATCT . 109 19 145 1 G|1.000;A|0.000 1 1 0 0 0 UBOX5 22888 broad.mit.edu;bcgsc.ca 37 20 3090889 3090889 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UBOX5-227 NM_014948 exon5 c.G1489T p.E497X CCGGCTCCTTTTT . 106 40 84 2 . 21 14 7 0 0 ADAM33 80332 broad.mit.edu;bcgsc.ca 37 20 3654768 3654768 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ADAM33-291 NM_025220 exon8 c.C681A p.H227Q GTTTCGGTGCCGA . 160 7 175 1 . 0 0 0 0 0 SEC23B 10483 ucsc.edu;bcgsc.ca 37 20 18491542 18491542 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SEC23B-91 NM_006363 exon2 c.G63T p.W21C TAGTTGGAACGTG . 213 46 301 5 . 15 11 3 1 0 CST9 128822 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 23584241 23584241 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CST9-91 NM_001008693 exon2 c.G386T p.S129I GGAAAGCTGATGC . 170 34 205 1 . 0 0 0 0 0 NECAB3 63941 broad.mit.edu 37 20 32248098 32248098 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NECAB3-91 NM_031232 exon6 c.C491A p.S164X GTATCTGACGCCC . 40 8 51 1 . 38 28 10 0 0 NCOA6 23054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33328359 33328359 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NCOA6-292 NM_014071 exon11 c.G5701T p.A1901S GTCCTGCTGAGGC . 38 22 41 0 . 22 10 12 0 0 DHX35 60625 mdanderson.org 37 20 37630412 37630412 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DHX35-226 NM_021931 exon9 c.C682A p.P228T AGTGATCCAGCAA . 36 12 37 0 . 6 5 1 0 0 PLCG1 5335 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 39794149 39794149 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLCG1-911 NM_182811 exon15 c.C1569A p.T523T GGAGACCAGCAGT . 115 50 165 1 . 8 1 7 0 0 SDC4 6385 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 43956014 43956014 + Missense_Mutation SNP A A G rs149518436 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SDC4-90 NM_002999 exon5 c.T487C p.F163L TCAGGAAGACGGC . 80 42 83 1 A|1.000;G|0.000 71 26 45 0 0 AURKA 6790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 54961553 54961553 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AURKA-1601 NM_198437 exon3 c.G79A p.V27M GAGTCACGAGAAC . 106 54 90 0 . 8 2 6 0 0 PRPF6 24148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 62616311 62616311 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRPF6-70 NM_012469 exon3 c.G292T p.D98Y AAAGATGATGAGG . 55 10 78 0 . 25 17 8 0 0 NPBWR2 2832 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 62737957 62737957 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NPBWR2-153 NM_005286 exon1 c.G228T p.M76I CGTCTTCATCTTG . 67 10 75 1 . 0 0 0 0 0 SAMSN1 64092 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 15893519 15893519 + Missense_Mutation SNP G G T rs192978628 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SAMSN1-94 NM_001256370 exon3 c.C285A p.F95L ACGATCGAAATTC . 112 27 147 2 G|0.999;A|0.000 0 0 0 0 0 MAP3K7CL 56911 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 30464777 30464777 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_020152 exon6 c.C245G p.S82C TATGCTCTGCAAC . 73 14 79 1 . 1 1 0 0 0 SCAF4 57466 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 33043911 33043911 + Missense_Mutation SNP T T A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCAF4-90 NM_020706 exon20 c.A3245T p.E1082V GTCACCTCAGGCT . 38 17 58 1 . 35 12 23 0 0 SYNJ1 8867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 34011381 34011381 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SYNJ1-232 NM_203446 exon31 c.C3869A p.S1290Y AAAGAAGACTGCG . 37 7 49 0 . 2 2 0 0 0 TRPM2 7226 broad.mit.edu;bcgsc.ca 37 21 45838383 45838383 + Nonsense_Mutation SNP C C T rs143493112 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPM2-92 NM_003307 exon22 c.C3406T p.R1136X CAGAACCGACAGT . 218 7 295 1 C|0.998;T|0.002 1 1 0 0 0 KRTAP10-3 386682 bcgsc.ca 37 21 45978319 45978319 + Missense_Mutation SNP G G C novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRTAP10-3-91 NM_198696 exon1 c.C280G p.P94A GGCAGGGGGAGGA . 86 71 91 5 . 0 0 0 0 0 KRTAP10-4 386672 ucsc.edu 37 21 45993851 45993851 + Silent SNP C C T rs543299 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRTAP10-4-90 NM_198687 exon1 c.C216T p.C72C GACCTGCGAGCCC . 31 25 16 5 C|1.000;|0.000 0 0 0 0 0 POTEH 23784 broad.mit.edu 37 22 16266963 16266963 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . POTEH-1 NM_001136213 exon9 c.C1486A p.Q496K GAAATTGCTGGCT . 1275 19 1151 2 . 0 0 0 0 0 CLDN5 7122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19511638 19511638 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CLDN5-492 NM_001130861 exon1 c.G396T p.W132C CCCCTTCCAGGTG . 67 56 56 0 . 2 2 0 0 0 DGCR8 54487 broad.mit.edu;bcgsc.ca 37 22 20080378 20080378 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DGCR8-90 NM_022720 exon8 c.G1653T p.V551V TGGTGTGACTTAC . 84 5 113 1 . 13 12 1 0 0 SERPIND1 3053 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 21140341 21140341 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SERPIND1-414 NM_000185 exon4 c.C1213A p.L405I TACAATCTAGTGG . 112 60 123 2 . 0 0 0 0 0 IGLL1 3543 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 23915564 23915564 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IGLL1-90 NM_020070 exon3 c.C531A p.S177R CAGGTAGCTGCTG . 139 8 126 0 . 12 12 0 0 0 MMP11 4320 broad.mit.edu;bcgsc.ca 37 22 24121481 24121481 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MMP11-291 NM_005940 exon2 c.C216A p.A72A GCCTGCCAGCAGC . 90 25 48 1 . 1 1 0 0 0 UPB1 51733 hgsc.bcm.edu;broad.mit.edu 37 22 24911294 24911294 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UPB1-92 NM_016327 exon6 c.G747T p.G249G CAACGGGGCTGAG . 97 5 152 0 . 0 0 0 0 0 MYO18B 84700 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 26423258 26423258 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MYO18B-142 NM_032608 exon43 c.G7318T p.D2440Y AAAGTGGACTTCG . 154 73 203 1 . 0 0 0 0 0 DEPDC5 9681 ucsc.edu;bcgsc.ca 37 22 32266663 32266663 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DEPDC5-519 NM_001242896 exon34 c.C3418A p.Q1140K AACAGCCAGACCT . 129 54 130 2 . 0 0 0 0 0 TEX33 339669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37397950 37397950 + Silent SNP G G T rs200772582 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001163857 exon3 c.C417A p.G139G GATGCTGCCCTTC . 112 25 171 0 G|0.999;A|0.001 0 0 0 0 0 TAB1 10454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 39811035 39811035 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAB1-522 NM_153497 exon2 c.G58T p.D20Y ACAGATGACCTGC . 69 11 86 0 . 6 6 0 0 0 TNRC6B 23112 ucsc.edu;bcgsc.ca 37 22 40657846 40657846 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TNRC6B-22 NM_001024843 exon7 c.G234T p.V78V CGAAGTGACGAAA . 161 76 251 3 . 0 0 0 0 0 TNRC6B 23112 bcgsc.ca;mdanderson.org 37 22 40666127 40666127 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TNRC6B-22 NM_001162501 exon6 c.C2808A p.V936V TATAGTCTGGAGC . 33 15 31 1 . 0 0 0 0 0 MOV10L1 54456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50552817 50552817 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MOV10L1-93 NM_018995 exon7 c.G892T p.G298X AATAAAGGAGACA . 36 21 65 0 . 0 0 0 0 0 IRAK2 3656 hgsc.bcm.edu;bcgsc.ca 37 3 10255048 10255048 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IRAK2-574 NM_001570 exon5 c.G686T p.R229M GGCACAGGCACGG . 67 4 92 0 . 1 1 0 0 0 GADL1 339896 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 30875737 30875737 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GADL1-90 NM_207359 exon10 c.C940A p.H314N TGCGGTGCTTCCT . 115 13 153 2 . 0 0 0 0 0 TTC21A 199223 bcgsc.ca 37 3 39156157 39156157 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTC21A-91 NM_145755 exon6 c.C640A p.L214M AGCTTCCTGCCAG . 126 33 163 3 . 2 2 0 0 0 LARS2 23395 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 45589017 45589017 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LARS2-92 NM_015340 exon22 c.G2707T p.D903Y GTGCAAGATTGAC . 94 18 84 1 . 15 12 3 0 0 SETD2 29072 broad.mit.edu;bcgsc.ca 37 3 47161746 47161746 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SETD2-1273 NM_014159 exon3 c.G4380T p.W1460C TTCCTTCCATCGC . 60 24 90 2 . 5 3 2 0 0 PTPN23 25930 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 47454406 47454406 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PTPN23-227 NM_015466 exon25 c.C4642A p.L1548I CCCCCCCTTTCCT . 30 16 27 0 . 1 0 1 0 0 COL7A1 1294 broad.mit.edu;bcgsc.ca 37 3 48632594 48632594 + Translation_Start_Site SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL7A1-160 . . . . GTCATCCTAGGCA . 125 21 65 1 . 0 0 0 0 0 USP19 10869 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 49147976 49147976 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP19-663 NM_001199161 exon25 c.C3760A p.L1254I CATATAGATCGTA . 100 18 127 1 . 27 24 3 0 0 MST1 4485 bcgsc.ca 37 3 49722288 49722288 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MST1-278 NM_020998 exon15 c.G1652T p.W551L CCCAACCATACCT . 270 27 258 3 . 23 23 0 0 0 SLC38A3 10991 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 50256024 50256024 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC38A3-67 NM_006841 exon13 c.1037-1G>T . GCCACAGACGGGG . 81 16 76 1 . 0 0 0 0 0 PBRM1 55193 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52643651 52643651 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PBRM1-575 NM_018313 exon17 c.G2245T p.A749S CAAGAGCATCTTT . 103 14 109 1 . 3 3 0 0 0 ITIH3 3699 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52841088 52841088 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITIH3-93 NM_002217 exon19 c.G2228T p.S743I CTTTCAGCTGGCT . 134 24 153 1 . 3 2 1 0 0 FAM208A 23272 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 56702515 56702515 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001112736 exon6 c.G807T p.L269F GGGGTCCAAAGCA . 97 52 123 1 . 2 0 2 0 0 DENND6A 201627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 57616535 57616535 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_152678 exon17 c.G1424T p.R475I AACTGTCTTAATT . 29 6 26 0 . 0 0 0 0 0 FLNB 2317 broad.mit.edu 37 3 58145372 58145372 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FLNB-593 NM_001164317 exon43 c.C7073A p.S2358Y GCCCCTCTGGAGC . 36 8 52 2 . 100 78 22 0 0 EPHA6 285220 ucsc.edu;bcgsc.ca 37 3 96706665 96706665 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EPHA6-1561 NM_001080448 exon3 c.C942A p.T314T TGATACCATTCCA . 104 50 181 2 . 0 0 0 0 0 EPHA6 285220 broad.mit.edu;bcgsc.ca 37 3 97194260 97194260 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EPHA6-1561 NM_001080448 exon8 c.C1959A p.F653L CGGATTCACTCTC . 56 21 75 2 . 0 0 0 0 0 ATG3 64422 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 112257000 112257000 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ATG3-93 NM_022488 exon8 c.C503A p.T168K TCATCTGTTTCCA . 119 21 183 2 . 0 0 0 0 0 LRRC58 116064 hgsc.bcm.edu 37 3 120068022 120068022 + Silent SNP C C G rs6770482 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001099678 exon1 c.G69C p.V23V GGTGGACACGCTG . 5 5 0 0 C|0.826;G|0.174 0 0 0 0 0 POLQ 10721 ucsc.edu;bcgsc.ca 37 3 121178920 121178920 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . POLQ-664 NM_199420 exon25 c.G7129T p.D2377Y TCAGATCATCCCC . 120 25 212 3 . 3 3 0 0 0 CASR 846 broad.mit.edu 37 3 121976121 121976121 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CASR-97 NM_001178065 exon3 c.G379T p.E127X CTTGATGAGTTCT . 78 15 91 2 . 0 0 0 0 0 PLXNA1 5361 hgsc.bcm.edu 37 3 126733053 126733053 + Silent SNP C C T rs11719489 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLXNA1-93 NM_032242 exon11 c.C2439T p.R813R CCTGCGCGAGAGC . 37 37 0 0 C|0.900;T|0.100 1 0 1 0 0 BFSP2 8419 broad.mit.edu 37 3 133169164 133169164 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BFSP2-90 NM_003571 exon4 c.C747A p.H249Q GCTGCACAAACAG . 111 3 109 0 . 0 0 0 0 0 PIK3CB 5291 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 138478043 138478043 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PIK3CB-1311 NM_006219 exon1 c.G143T p.R48L GCTTCCCGAGGTA . 170 22 239 1 . 0 0 0 0 0 NMNAT3 349565 ucsc.edu;bcgsc.ca 37 3 139292460 139292460 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NMNAT3-90 NM_178177 exon4 c.C245A p.A82E AAGAGTGCCTTGC . 115 51 159 2 . 7 0 7 0 0 PAQR9 344838 ucsc.edu;bcgsc.ca 37 3 142681441 142681441 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PAQR9-68 NM_198504 exon1 c.C738A p.V246V GACGAAGACGAAG . 267 43 228 2 . 0 0 0 0 0 ZIC1 7545 hgsc.bcm.edu 37 3 147127937 147127937 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZIC1-91 NM_003412 exon1 c.G38T p.G13V CGATCGGCGTGAC . 28 6 4 0 . 0 0 0 0 0 CPB1 1360 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 148575243 148575243 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CPB1-92 NM_001871 exon10 c.982-1G>T . TTTGCAGAATGCC . 83 7 93 0 . 3 3 0 0 0 TSC22D2 9819 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 150128968 150128968 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TSC22D2-91 NM_014779 exon1 c.G1831T p.E611X ATTGCTGAAAATA . 98 35 122 1 . 8 1 7 0 0 PTX3 5806 broad.mit.edu;ucsc.edu 37 3 157160724 157160724 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PTX3-514 NM_002852 exon3 c.G1102T p.V368F TGGGGAGTCACAG . 43 4 73 1 . 1 1 0 0 0 IQCJ-SCHIP1 100505385 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 159605617 159605617 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001197113 exon8 c.G1345T p.A449S GCCCTTGCCATGG . 153 16 187 2 . 2 2 0 0 0 KPNA4 3840 broad.mit.edu 37 3 160243877 160243877 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KPNA4-226 NM_002268 exon9 c.G575T p.R192I TAATCTCTACACT . 187 6 266 2 . 9 8 1 0 0 B3GALNT1 8706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 160804280 160804280 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . B3GALNT1-91 NM_001038628 exon8 c.C263A p.P88H TCTGAAGGGTGGG . 46 22 36 0 . 0 0 0 0 0 ZBBX 79740 ucsc.edu;bcgsc.ca 37 3 167033573 167033573 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZBBX-92 NM_024687 exon15 c.C1239A p.Y413X AACTTTGTAAGGC . 142 19 234 2 . 0 0 0 0 0 LRRC34 151827 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169514567 169514567 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LRRC34-90 NM_001172779 exon8 c.C874A p.L292M TGTTCAGATACAG . 105 19 161 2 . 0 0 0 0 0 SLC7A14 57709 broad.mit.edu 37 3 170198352 170198352 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC7A14-94 NM_020949 exon7 c.C1719A p.F573L GAGGATGAAGAGC . 63 10 87 2 . 0 0 0 0 0 TNIK 23043 broad.mit.edu 37 3 170928941 170928941 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TNIK-550 NM_001161562 exon4 c.C270A p.I90I CTTTTTGATAAAA . 51 6 56 2 . 3 3 0 0 0 ECT2 1894 broad.mit.edu 37 3 172520657 172520657 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ECT2-724 NM_001258315 exon20 c.C1993G p.L665V GCTAATCTTTTAT . 35 6 43 2 . 0 0 0 0 0 NAALADL2 254827 bcgsc.ca 37 3 175189492 175189492 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NAALADL2-47 NM_207015 exon9 c.G1599T p.G533G AAGGGGGAACTCT . 137 56 265 5 . 0 0 0 0 0 USP13 8975 ucsc.edu 37 3 179483602 179483602 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP13-659 NM_003940 exon19 c.G2379T p.K793N GGCCAAGCCCGAA . 76 11 123 2 . 7 5 2 0 0 TTC14 151613 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 180324359 180324359 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTC14-91 NM_001042601 exon9 c.C1140A p.Y380X AAAATACCTCTGC . 91 9 100 0 . 3 3 0 0 0 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184910464 184910464 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EHHADH-93 NM_001966 exon7 c.G1722T p.K574N ACCTGTCTTCTGG . 89 30 93 0 . 3 3 0 0 0 CEP19 84984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 196434499 196434499 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CEP19-69 NM_032898 exon3 c.G427T p.D143Y CAATGTCATAAAC . 47 17 83 0 . 5 3 2 0 0 GAK 2580 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 882712 882712 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GAK-568 NM_005255 exon11 c.C1128A p.D376E CAGAATGTCCAGG . 116 35 86 1 . 30 23 7 0 0 TMEM175 84286 broad.mit.edu;ucsc.edu 37 4 947039 947039 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TMEM175-90 NM_032326 exon8 c.C524A p.S175Y AGCGCTCTGCCCA . 105 16 84 1 . 98 92 6 0 0 CRIPAK 285464 hgsc.bcm.edu 37 4 1388755 1388755 + Silent SNP C C G rs141481663 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CRIPAK-90 NM_175918 exon1 c.C456G p.P152P CGTGCCCATGCGG . 113 15 8 0 C|0.960;G|0.040 55 18 37 0 0 TACC3 10460 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 1742615 1742615 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TACC3-91 NM_006342 exon13 c.G2125T p.D709Y GAAAAAGACCAAC . 126 20 88 1 . 90 82 8 0 0 OTOP1 133060 hgsc.bcm.edu 37 4 4228456 4228456 + Silent SNP G G T rs73191872 bycluster;by1000genomes TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OTOP1-92 NM_177998 exon1 c.C136A p.R46R CGCCCCGCCGGGG . 53 20 9 0 . 0 0 0 0 0 OTOP1 133060 hgsc.bcm.edu 37 4 4228472 4228472 + Silent SNP T T C rs76810534 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OTOP1-92 NM_177998 exon1 c.A120G p.E40E CGGGGATTCCGGG . 39 13 5 0 . 0 0 0 0 0 HTRA3 94031 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 8293280 8293280 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HTRA3-91 NM_053044 exon4 c.G892T p.A298S ACGGATGCCATCA . 133 17 110 1 . 0 0 0 0 0 DEFB131 644414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 9452101 9452101 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DEFB131-68 NM_001040448 exon2 c.C74A p.S25Y TCATTTCTAATGA . 224 40 252 0 . 0 0 0 0 0 FAM184B 27146 broad.mit.edu 37 4 17706724 17706724 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM184B-23 NM_015688 exon5 c.G1276T p.D426Y GCTGGTCTTTGAG . 150 6 120 0 . 0 0 0 0 0 ZCCHC4 29063 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 25351214 25351214 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZCCHC4-70 NM_024936 exon7 c.C860A p.A287D CTCTGGCTATTAC . 156 57 154 1 . 1 1 0 0 0 TBC1D1 23216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 37903767 37903767 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TBC1D1-91 NM_015173 exon2 c.C51A p.V17V CGAGGTCTCGGTG . 177 47 111 0 . 0 0 0 0 0 WDR19 57728 bcgsc.ca 37 4 39188188 39188188 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WDR19-67 NM_025132 exon3 c.G128T p.R43L TTGATCGCCATGG . 181 57 121 3 . 1 1 0 0 0 RBM47 54502 hgsc.bcm.edu 37 4 40440854 40440854 + Silent SNP G G C rs1052153 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RBM47-25 NM_001098634 exon4 c.C57G p.S19S CTTGGCGGAGGAC . 9 8 0 0 G|0.794;C|0.206 4 0 4 0 0 CORIN 10699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 47746504 47746504 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CORIN-91 NM_006587 exon5 c.C714A p.L238L GCATCTGAGGAAA . 117 12 85 0 . 0 0 0 0 0 ZAR1 326340 hgsc.bcm.edu 37 4 48492434 48492434 + Missense_Mutation SNP G G C rs10008444 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZAR1-90 NM_175619 exon1 c.G126C p.Q42H GCAGCAGCGCGGC . 9 9 0 0 G|0.025;C|0.975 0 0 0 0 0 SCFD2 152579 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 54011642 54011642 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCFD2-93 NM_152540 exon5 c.C1419A p.I473I GAGAAGGATCAGC . 127 22 106 1 . 23 21 2 0 0 SRP72 6731 ucsc.edu;bcgsc.ca 37 4 57352563 57352563 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SRP72-116 NM_006947 exon11 c.G1159T p.G387C TCTCAAGGTATTA . 216 46 167 3 . 0 0 0 0 0 SLC4A4 8671 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 72363343 72363343 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC4A4-95 NM_001098484 exon16 c.C2100A p.F700L CCTCTTCTTGGGA . 131 11 92 0 . 0 0 0 0 0 ANKRD17 26057 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 73941997 73941997 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANKRD17-234 NM_032217 exon34 c.G7763C p.G2588A CAGGGTCCAGTCC . 200 11 142 0 . 0 0 0 0 0 ANKRD17 26057 broad.mit.edu 37 4 74005860 74005860 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANKRD17-234 NM_032217 exon15 c.G2473T p.A825S CTATGGCTTCTTT . 112 5 108 0 . 1 1 0 0 0 CXCL1 2919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 74735403 74735403 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CXCL1-204 NM_001511 exon2 c.G118T p.E40X GCCACTGAACTGC . 221 71 164 0 . 0 0 0 0 0 PARM1 25849 broad.mit.edu;bcgsc.ca 37 4 75938041 75938041 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PARM1-1 NM_015393 exon2 c.C450A p.S150S CATCTCCCCTCAA . 212 12 171 1 . 3 3 0 0 0 CDKL2 8999 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 76522169 76522169 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDKL2-454 NM_003948 exon9 c.C1272A p.P424P AATGCTGGGAGCA . 222 58 183 2 . 0 0 0 0 0 COQ2 27235 broad.mit.edu 37 4 84205941 84205941 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COQ2-92 NM_015697 exon1 c.G127A p.A43T GACGAGCTCGGAT . 9 5 10 0 . 0 0 0 0 0 DAPP1 27071 bcgsc.ca 37 4 100738081 100738081 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DAPP1-93 NM_014395 exon1 c.C11A p.A4E GCAGAGCAGAACT . 128 16 103 2 . 0 0 0 0 0 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 104082566 104082566 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CENPE-277 NM_001813 exon19 c.G1891T p.E631X CAGTTTCAGCATC . 138 15 125 0 . 2 2 0 0 0 ARHGEF38 54848 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 106534599 106534599 + Nonsense_Mutation SNP C C A rs61751053 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGEF38-292 NM_001242729 exon3 c.C443A p.S148X AGATATCAGCCAA . 98 15 111 0 C|0.995;T|0.005 0 0 0 0 0 CYP2U1 113612 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 108866353 108866353 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP2U1-90 NM_183075 exon2 c.C718A p.R240S GGCCAGCGCTTTG . 136 23 102 1 . 1 1 0 0 0 HADH 3033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 108944697 108944697 + Missense_Mutation SNP G G T rs144699575 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HADH-91 NM_005327 exon5 c.G614T p.G205V CCCTAGGAAAGCA . 131 17 108 0 G|0.999;C|0.001 86 74 12 0 0 ENPEP 2028 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 111441505 111441505 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ENPEP-157 NM_001977 exon10 c.G1710T p.Q570H TTCTCAGCCCCCT . 165 14 141 0 . 3 3 0 0 0 ANK2 287 broad.mit.edu;bcgsc.ca 37 4 114257869 114257869 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANK2-583 NM_001148 exon31 c.C3728A p.S1243X AAGCTTCAAGTGA . 193 8 132 0 . 2 2 0 0 0 USP53 54532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 120182880 120182880 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP53-660 NM_019050 exon11 c.G833T p.R278I TTTATAGAGTTAC . 97 19 92 0 . 0 0 0 0 0 ANXA5 308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 122607510 122607510 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ANXA5-91 NM_001154 exon3 c.G27T p.V9V GTCAGTCACAGTG . 68 9 65 0 . 716 629 87 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126329878 126329878 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT4-108 NM_024582 exon4 c.G5849T p.S1950I CATACAGCACATC . 105 22 84 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126329907 126329907 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT4-108 NM_024582 exon4 c.G5878T p.G1960X CCTGTGGGATCTA . 86 33 76 0 . 0 0 0 0 0 FAT4 79633 broad.mit.edu;bcgsc.ca 37 4 126336106 126336106 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT4-108 NM_024582 exon5 c.G5988T p.K1996N TGACAAGAATGGT . 182 15 155 1 . 0 0 0 0 0 FAT4 79633 broad.mit.edu;bcgsc.ca 37 4 126373173 126373173 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT4-108 NM_024582 exon9 c.C11002A p.L3668M TGTGATCTGAATT . 148 16 106 1 . 1 1 0 0 0 GYPE 2996 ucsc.edu;bcgsc.ca 37 4 144797985 144797985 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_198682 exon3 c.G160T p.A54S CCATCGCCCACCA . 352 67 340 3 . 0 0 0 0 0 HHIP 64399 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 145628246 145628246 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HHIP-283 NM_022475 exon6 c.C991A p.P331T AAAAATCCACACC . 72 27 64 2 . 0 0 0 0 0 TTC29 83894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 147830262 147830262 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TTC29-90 NM_031956 exon5 c.C316A p.L106M TCTGCAGCCAGAA . 53 15 55 0 . 0 0 0 0 0 TENM3 55714 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 183696223 183696223 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001080477 exon23 c.G5221T p.E1741X CCTGGCGAGAACG . 178 71 204 2 . 0 0 0 0 0 PDLIM3 27295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 186427748 186427748 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDLIM3-92 NM_014476 exon6 c.C721A p.R241R CATTCCGATTGTC . 61 13 47 0 . 7 7 0 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187534440 187534440 + Missense_Mutation SNP G G T rs200812915 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT1-34 NM_005245 exon13 c.C9286A p.L3096I TGACGAGAAGATG . 109 37 97 0 G|0.999;C|0.000 10 5 5 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187629193 187629193 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAT1-34 NM_005245 exon2 c.G1789T p.D597Y GTTCATCTGCATC . 43 27 42 0 . 0 0 0 0 0 SLC9A3 6550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 480044 480044 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC9A3-90 NM_004174 exon10 c.C1554A p.V518V CATGAGGACCCTG . 124 15 80 0 . 25 20 5 0 0 SRD5A1 6715 hgsc.bcm.edu 37 5 6633779 6633779 + Silent SNP C C G rs248793 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SRD5A1-90 NM_001047 exon1 c.C90G p.R30R CGCGCGCAATCGT . 9 9 0 0 C|0.454;G|0.546 2 0 2 0 0 CCT5 22948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 10258587 10258587 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCT5-92 NM_012073 exon6 c.C813A p.V271V CTCTGTCGAAGAT . 244 34 206 0 . 160 125 35 0 0 CDH18 1016 ucsc.edu;bcgsc.ca 37 5 19721543 19721543 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDH18-159 NM_001167667 exon5 c.G556T p.A186S CATCTGCATCAGT . 307 39 287 2 . 1 1 0 0 0 PDZD2 23037 ucsc.edu;bcgsc.ca 37 5 32088697 32088697 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PDZD2-563 NM_178140 exon19 c.G5143T p.A1715S AAAGTAGCCAGGC . 187 52 191 2 . 1 1 0 0 0 RICTOR 253260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 38966809 38966809 + Silent SNP C C A rs149142099 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RICTOR-849 NM_152756 exon15 c.G1233T p.V411V TGTTATCACTTCA . 170 17 102 0 C|1.000;T|0.000 1 0 1 0 0 SKIV2L2 23517 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 54619984 54619984 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SKIV2L2-92 NM_015360 exon3 c.C297A p.V99V CAGAGTCAAGGTA . 167 49 168 1 . 8 6 2 0 0 KIF2A 3796 bcgsc.ca 37 5 61673487 61673487 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KIF2A-228 NM_001098511 exon19 c.1912-1G>T . TTTTAAGGAAGAA . 191 17 140 2 . 0 0 0 0 0 LOC647859 0 bcgsc.ca 37 5 70370106 70370106 + RNA SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . CAATTTGCTGTTT . 1763 290 1350 11 . 0 0 0 0 0 ARHGEF28 64283 ucsc.edu 37 5 73142221 73142221 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001080479 exon12 c.C1556A p.S519Y TGGACTCTTTTGA . 144 15 135 3 . 0 0 0 0 0 CRHBP 1393 ucsc.edu;bcgsc.ca 37 5 76264679 76264679 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CRHBP-90 NM_001882 exon7 c.G938T p.S313I GAAACAGTATCGG . 197 54 197 3 . 1 1 0 0 0 MSH3 4437 hgsc.bcm.edu 37 5 79950715 79950715 + Missense_Mutation SNP G G C rs144776112 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MSH3-661 NM_002439 exon1 c.G169C p.A57P GCAGCGGCCGCAG . 23 11 10 0 G|0.834;C|0.166 1 1 0 0 0 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 89923239 89923239 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR98-103 NM_032119 exon7 c.G884T p.G295V TGATTGGATCTGA . 168 23 173 0 . 0 0 0 0 0 GPR98 84059 broad.mit.edu 37 5 90106472 90106472 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR98-103 NM_032119 exon74 c.G15395T p.G5132V TGGCAGGAATGGA . 86 4 72 0 . 0 0 0 0 0 SPATA9 83890 ucsc.edu;bcgsc.ca 37 5 95018528 95018528 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SPATA9-90 NM_031952 exon1 c.G31T p.G11W CCTGCCCACATAT . 191 34 136 2 . 0 0 0 0 0 SEMA6A 57556 broad.mit.edu;bcgsc.ca 37 5 115837909 115837909 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SEMA6A-92 NM_020796 exon3 c.C215A p.A72D TACCTAGCAGCAA . 228 11 174 1 . 0 0 0 0 0 CCNI2 645121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 132087879 132087879 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCNI2-68 NM_001039780 exon5 c.G996T p.K332N GCTAAAGAAAGCA . 157 18 111 0 . 0 0 0 0 0 SEPT8 23176 hgsc.bcm.edu;bcgsc.ca 37 5 132097158 132097158 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SEPT8-70 NM_015146 exon7 c.G954T p.Q318H GAAGGGCTGGCTG . 60 6 48 0 . 0 0 0 0 0 SOWAHA 134548 hgsc.bcm.edu 37 5 132149684 132149684 + Missense_Mutation SNP G G C rs40274 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_175873 exon1 c.G371C p.R124P TGGTCCGGGTGCC . 9 9 0 0 G|0.980;C|0.020 0 0 0 0 0 AFF4 27125 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 132272803 132272803 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AFF4-229 NM_014423 exon2 c.G79A p.A27T GGAAGGCGTCTTC . 150 10 129 0 . 3 3 0 0 0 PROB1 389333 hgsc.bcm.edu 37 5 138728147 138728147 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001161546 exon1 c.G2624T p.G875V GCGGCCCCGGGCT . 17 5 2 0 . 0 0 0 0 0 PCDHA6 56142 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140207893 140207893 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PCDHA6-92 NM_031849 exon1 c.G217T p.D73Y CGCGAGGACCTTC . 162 12 114 0 . 1 1 0 0 0 PCDHB13 56123 ucsc.edu 37 5 140594815 140594815 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PCDHB13-93 NM_018933 exon1 c.C1120A p.L374I TCAGATCTTGATT . 241 51 187 5 . 8 4 4 0 0 PCDHGA7 56108 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140763290 140763290 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_032087 exon1 c.G824T p.G275V TCAATGGGGAAGT . 182 44 127 2 . 0 0 0 0 0 ARHGAP26 23092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 142264925 142264925 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGAP26-660 NM_015071 exon5 c.G447T p.L149F ACACTTGAATTTG . 296 75 239 0 . 0 0 0 0 0 ITK 3702 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 156671402 156671402 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITK-1427 NM_005546 exon13 c.G1363T p.A455S CTTTTTGCTGCAG . 123 43 149 1 . 0 0 0 0 0 CYFIP2 26999 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 156753261 156753261 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYFIP2-22 NM_001037332 exon18 c.G2065T p.E689X TACGATGAGATAG . 129 21 153 1 . 4 4 0 0 0 IL12B 3593 bcgsc.ca 37 5 158750252 158750252 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IL12B-90 NM_002187 exon3 c.C174A p.I58I CCAGGTGATACCA . 148 43 142 3 . 0 0 0 0 0 RANBP17 64901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 170668124 170668124 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RANBP17-524 NM_022897 exon23 c.C2615A p.S872X TGCTGTCAGTGTC . 110 29 84 0 . 6 6 0 0 0 ARL10 285598 hgsc.bcm.edu 37 5 175792605 175792605 + Silent SNP G G C rs2303667 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARL10-91 NM_173664 exon1 c.G39C p.L13L GGCGCTGGGCGGC . 9 9 0 0 G|0.585;C|0.415 0 0 0 0 0 COL23A1 91522 broad.mit.edu;ucsc.edu 37 5 177690260 177690260 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL23A1-91 NM_173465 exon9 c.C588A p.G196G AGGAGGGCCCCGG . 78 13 48 1 . 0 0 0 0 0 BTNL3 10917 broad.mit.edu 37 5 180432368 180432368 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_197975 exon8 c.G897T p.P299P TCACCCGAAGCTC . 124 3 130 0 . 0 0 0 0 0 BTNL9 153579 broad.mit.edu;bcgsc.ca 37 5 180477228 180477228 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BTNL9-91 NM_152547 exon4 c.G595T p.E199X GAGTTTGAAGCCA . 170 10 180 2 . 3 3 0 0 0 OR2V2 285659 broad.mit.edu;bcgsc.ca 37 5 180582781 180582781 + Missense_Mutation SNP C C T rs200222451 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR2V2-69 NM_206880 exon1 c.C839T p.T280M TCTACACGGTCCT . 239 12 257 1 C|0.999;T|0.000 0 0 0 0 0 NQO2 4835 broad.mit.edu 37 6 3012810 3012810 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NQO2-91 NM_000904 exon4 c.G205T p.G69X AATTATGGAGTGG . 220 5 193 0 . 163 162 1 0 0 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12121200 12121200 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HIVEP1-139 NM_002114 exon4 c.G1172T p.C391F AAATGTGCAATCT . 82 19 77 0 . 0 0 0 0 0 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12163624 12163624 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HIVEP1-139 NM_002114 exon9 c.C7087A p.Q2363K CAGAAGCAGCAAA . 93 20 79 0 . 10 7 3 0 0 NRSN1 140767 ucsc.edu 37 6 24145937 24145937 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NRSN1-90 NM_080723 exon4 c.G351T p.L117L CAAGCTGGCAGGA . 129 14 128 3 . 0 0 0 0 0 OR2W1 26692 broad.mit.edu 37 6 29012545 29012545 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR2W1-93 NM_030903 exon1 c.G408T p.M136I TGGGTTCATGACT . 68 4 65 1 . 0 0 0 0 0 OR2H1 26716 ucsc.edu;bcgsc.ca 37 6 29429993 29429993 + Missense_Mutation SNP G G T rs139057187 byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR2H1-90 NM_030883 exon3 c.G447T p.M149I GGTTATGAGTCTG . 172 43 130 2 G|0.999;A|0.001 0 0 0 0 0 GABBR1 2550 broad.mit.edu;bcgsc.ca 37 6 29591685 29591685 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GABBR1-521 NM_001470 exon7 c.G774T p.R258S CCACATCCTAGCA . 214 7 172 0 . 4 4 0 0 0 RNF39 80352 hgsc.bcm.edu 37 6 30039364 30039364 + Missense_Mutation SNP C C A rs11753382 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RNF39-226 NM_025236 exon4 c.G787T p.G263C TGGGGCCGTCAGG . 17 13 0 0 C|0.862;A|0.138 6 6 0 0 0 ABCF1 23 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30552279 30552279 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ABCF1-92 NM_001025091 exon14 c.G1327T p.E443X GACCCTGAAATGC . 79 9 79 0 . 36 36 0 0 0 EHMT2 10919 broad.mit.edu;ucsc.edu 37 6 31856281 31856281 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EHMT2-91 NM_006709 exon12 c.G1368T p.L456L GCCTGACAGCTGT . 119 14 68 1 . 0 0 0 0 0 CFB 629 broad.mit.edu 37 6 31917321 31917321 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CFB-91 NM_001710 exon10 c.C1395A p.F465L TGTTTTCTACCAA . 75 5 50 2 . 0 0 0 0 0 PSMB9 5698 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32825820 32825820 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PSMB9-90 NM_002800 exon4 c.C299A p.A100E CTGCTGCAAATGT . 193 50 132 1 . 47 36 11 0 0 ITPR3 3710 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33630346 33630346 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ITPR3-1085 NM_002224 exon8 c.C753A p.F251L GAAGTTCCTGACG . 107 50 73 1 . 1 1 0 0 0 BTBD9 114781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 38561778 38561778 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BTBD9-226 NM_052893 exon4 c.G511T p.E171X GGACTTCCTGAGC . 187 34 134 0 . 1 1 0 0 0 DNAH8 1769 broad.mit.edu;bcgsc.ca 37 6 38800136 38800136 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DNAH8-615 NM_001206927 exon31 c.G4227T p.K1409N GCCAAAGTTTAAA . 222 8 173 0 . 0 0 0 0 0 KCNK17 89822 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 39271826 39271826 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KCNK17-227 NM_001135111 exon4 c.C595A p.L199I AGAAGAGCAGCGG . 153 42 122 2 . 0 0 0 0 0 PRPH2 5961 broad.mit.edu;ucsc.edu 37 6 42689604 42689604 + Missense_Mutation SNP C C A rs61755787 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRPH2-94 NM_000322 exon1 c.G469T p.D157Y GCATGTCGATGGT . 204 21 148 2 . 0 0 0 0 0 CNPY3 10695 broad.mit.edu 37 6 42897358 42897360 + In_Frame_Del DEL TGC TGC - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CNPY3-69 NM_006586 exon1 c.50_52del p.17_18del TTCCCTTGCTGCT . 106 8 14 0 . 0 0 0 0 0 PPP2R5D 5528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 42957364 42957364 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PPP2R5D-1082 NM_180976 exon2 c.G43T p.A15S AAGGTTGCCAAAT . 81 12 57 0 . 10 8 2 0 0 CYP39A1 51302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46607338 46607338 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CYP39A1-91 NM_016593 exon3 c.G381T p.M127I AGTCCCCATTTTC . 121 35 109 0 . 0 0 0 0 0 OPN5 221391 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 47754293 47754293 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OPN5-69 NM_181744 exon2 c.C173A p.S58Y ACATGTCTTCTAG . 119 15 98 0 . 0 0 0 0 0 GLYATL3 389396 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 49485158 49485158 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001010904 exon4 c.C202A p.L68I GATAACCTTGATC . 149 12 118 0 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 51612798 51612798 + Missense_Mutation SNP C C A rs141507554 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PKHD1-603 NM_170724 exon58 c.G9616T p.V3206L TGGCCACAATGAC . 178 22 127 0 C|1.000;A|0.000 0 0 0 0 0 ELOVL5 60481 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 53139932 53139932 + Missense_Mutation SNP A A T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ELOVL5-90 NM_001242828 exon6 c.T533A p.L178Q ATGTTCAGCATCG . 234 32 187 2 . 92 82 10 0 0 TINAG 27283 bcgsc.ca;mdanderson.org 37 6 54172881 54172881 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TINAG-93 . . . . GATGTTCGTTTCA . 101 24 78 0 . 0 0 0 0 0 FAM83B 222584 broad.mit.edu;bcgsc.ca 37 6 54805222 54805222 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM83B-96 NM_001010872 exon5 c.G1453T p.E485X ACCCTTGAACATA . 57 13 60 1 . 0 0 0 0 0 COL21A1 81578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 56033011 56033011 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL21A1-24 NM_030820 exon6 c.G1111T p.E371X TGTTTTCAATTTG . 78 12 58 0 . 0 0 0 0 0 RNU6-71 100873774 broad.mit.edu;bcgsc.ca 37 6 56569107 56569107 + RNA SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . CTAAAAGAGAAAT . 163 12 109 0 . 0 0 0 0 0 LGSN 51557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 63991038 63991038 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LGSN-227 NM_016571 exon4 c.G418T p.A140S ATGTGGCTCTTAT . 126 42 111 0 . 0 0 0 0 0 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 65301109 65301109 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EYS-660 NM_001142800 exon26 c.G4651T p.E1551X TTAATTCTCTTAA . 117 19 85 0 . 0 0 0 0 0 COL19A1 1310 bcgsc.ca 37 6 70916977 70916977 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL19A1-156 NM_001858 exon51 c.G3428T p.X1143L GGAATTGAACACA . 50 13 39 1 . 0 0 0 0 0 MB21D1 115004 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 74161347 74161347 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MB21D1-90 NM_138441 exon1 c.G558T p.V186V CCCTTTCACCATC . 299 19 211 0 . 0 0 0 0 0 PRSS35 167681 broad.mit.edu 37 6 84234143 84234143 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRSS35-91 NM_153362 exon2 c.C983A p.S328Y GTGTGTCCGACGA . 99 20 96 2 . 0 0 0 0 0 SNAP91 9892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 84292059 84292059 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SNAP91-23 NM_001242792 exon22 c.C2031A p.F677L CGCCATGAAAGAA . 47 12 59 0 . 1 0 1 0 0 NT5E 4907 ucsc.edu;bcgsc.ca 37 6 86181104 86181104 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NT5E-93 NM_001204813 exon3 c.G712A p.V238I GTGGACGTCGTGG . 158 14 148 2 . 3 2 1 0 0 NT5E 4907 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 86195053 86195053 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NT5E-93 NM_001204813 exon4 c.C852A p.G284G TTTTGGCAAATAC . 186 43 139 1 . 2 1 1 0 0 POU3F2 5454 hgsc.bcm.edu 37 6 99283376 99283376 + Silent SNP T T G rs195860 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . POU3F2-90 NM_005604 exon1 c.T627G p.G209G GGCCGGTCTGCAC . 8 8 0 0 T|0.089;G|0.911 0 0 0 0 0 USP45 85015 bcgsc.ca 37 6 99956553 99956553 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP45-637 NM_001080481 exon3 c.G206T p.R69I AATCTTCTTTCTT . 75 24 98 3 . 3 3 0 0 0 SIM1 6492 hgsc.bcm.edu;bcgsc.ca 37 6 100898139 100898139 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SIM1-94 NM_005068 exon3 c.G352T p.E118X ACTCACCTACCTG . 84 7 59 0 . 0 0 0 0 0 GRIK2 2898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 102503296 102503296 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRIK2-157 NM_021956 exon15 c.C2403A p.G801G GAGGGGCAATGGT . 145 45 94 0 . 0 0 0 0 0 AIM1 202 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 106975232 106975232 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AIM1-139 NM_001624 exon5 c.G3241T p.E1081X TTAGAAGAAGGAG . 238 27 185 1 . 0 0 0 0 0 AKD1 221264 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 109850273 109850273 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKD1-91 NM_001145128 exon29 c.G3574T p.D1192Y TCGTATCAACCTG . 24 6 19 0 . 0 0 0 0 0 FIG4 9896 broad.mit.edu 37 6 110112598 110112598 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FIG4-69 NM_014845 exon20 c.G2200T p.E734X AGAGAAGAAGCTG . 43 4 35 0 . 7 7 0 0 0 GOPC 57120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 117923266 117923266 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GOPC-676 NM_001017408 exon1 c.C186A p.I62I ATAAGTGATGTCC . 114 20 95 0 . 3 3 0 0 0 FAM184A 79632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 119285913 119285913 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FAM184A-519 NM_024581 exon16 c.G3057T p.L1019L TAATTCCAGCTGA . 66 12 62 0 . 1 1 0 0 0 GJA1 2697 ucsc.edu 37 6 121768481 121768481 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GJA1-92 NM_000165 exon2 c.C488A p.S163Y TCAAGTCTATCTT . 247 42 205 4 . 55 51 4 0 0 NCOA7 135112 broad.mit.edu 37 6 126210486 126210486 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NCOA7-227 NM_001199619 exon10 c.G1286T p.G429V GTGGTGGAATGCA . 87 23 65 2 . 2 2 0 0 0 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 131927695 131927695 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MED23-24 NM_015979 exon14 c.C1309A p.H437N TGAGATGAATCCA . 166 33 160 0 . 5 1 4 0 0 TAAR5 9038 bcgsc.ca 37 6 132910431 132910431 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAAR5-91 NM_003967 exon1 c.G395T p.R132L CAGTGGCGGTCAA . 291 14 231 2 . 0 0 0 0 0 MYB 4602 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 135513461 135513461 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MYB-838 NM_001161660 exon6 c.528-1G>T . TGTGCAGAACTGA . 83 8 56 0 . 0 0 0 0 0 MYB 4602 bcgsc.ca 37 6 135517036 135517036 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MYB-838 NM_001161659 exon9 c.G1099T p.E367X CCTGAAGAAAGCG . 136 72 103 3 . 0 0 0 0 0 HECA 51696 broad.mit.edu 37 6 139487898 139487898 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HECA-90 NM_016217 exon2 c.C749A p.S250Y AGAACTCCCAGGA . 116 13 65 2 . 0 0 0 0 0 HIVEP2 3097 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 143094923 143094923 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HIVEP2-95 NM_006734 exon5 c.C953A p.S318X CCCAATGATTCTT . 65 14 41 1 . 0 0 0 0 0 GRM1 2911 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 146708064 146708064 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRM1-1080 NM_000838 exon7 c.C1641A p.C547X GATTTGCACGGCC . 109 26 91 2 . 0 0 0 0 0 GRM1 2911 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 146708146 146708146 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRM1-1080 NM_000838 exon7 c.C1723A p.L575I GCAGATCTAACAG . 121 35 91 1 . 0 0 0 0 0 ZC3H12D 340152 hgsc.bcm.edu 37 6 149772190 149772190 + Missense_Mutation SNP G G A rs112722576 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_207360 exon6 c.C1213T p.P405S GCGGAGGCGGGAG . 21 12 1 0 G|0.668;A|0.332 0 0 0 0 0 PLEKHG1 57480 broad.mit.edu 37 6 151055067 151055067 + Missense_Mutation SNP G G A rs199980034 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLEKHG1-92 NM_001029884 exon3 c.G250A p.E84K GGCAGCGAAAGGC . 122 15 86 2 G|0.999;A|0.001 0 0 0 0 0 AKAP12 9590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 151647016 151647016 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKAP12-293 NM_144497 exon1 c.C21A p.I7I CACCATCACAGGT . 70 12 50 0 . 0 0 0 0 0 SYNE1 23345 broad.mit.edu 37 6 152551838 152551838 + Splice_Site SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SYNE1-607 NM_033071 exon115 c.20827-1G>T . CTGGATCTGAACA . 50 8 48 2 . 0 0 0 0 0 TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155566830 155566830 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TIAM2-93 NM_012454 exon18 c.C3617A p.A1206D TCTGTGCTAACCA . 70 16 46 0 . 8 5 3 0 0 SLC22A2 6582 hgsc.bcm.edu 37 6 160663410 160663410 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC22A2-154 NM_003058 exon8 c.T1304C p.I435T CATGAGATAATAA . 114 14 124 0 . 0 0 0 0 0 SLC22A2 6582 bcgsc.ca 37 6 160663410 160663422 + Frame_Shift_Del DEL ATAATAATTTTTA ATAATAATTTTTA - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 ATAATAATTTTTA - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC22A2-154 NM_003058 exon8 c.1292_1304del p.431_435del CATGAGATAATAA . 118 6 125 0 . 0 0 0 0 0 SLC22A2 6582 hgsc.bcm.edu 37 6 160663414 160663438 + In_Frame_Del DEL TAATTTTTAGCCATTGTAGATCTAA TAATTTTTAGCCATTGTAGATCTAA - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 TAATTTTTAGCCATTGTAGATCTAA TAATTTTTAGCCATTGTAGATCTAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC22A2-154 NM_003058 exon8 c.1280_1300del p.427_434del AGATAATAATTTT . 106 0 113 0 . 0 0 0 0 0 SLC22A2 6582 bcgsc.ca 37 6 160663424 160663435 + Frame_Shift_Del DEL CCATTGTAGATC CCATTGTAGATC - novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 CCATTGTAGATC - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC22A2-154 NM_003058 exon8 c.1280_1290del p.427_430del TTTTAGCCATTGT . 92 6 99 0 . 0 0 0 0 0 C6orf123 26238 broad.mit.edu;bcgsc.ca 37 6 168188273 168188273 + RNA SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . AGTGTTGAAATAA . 33 5 29 0 . 0 0 0 0 0 MLLT4-AS1 653483 broad.mit.edu;bcgsc.ca 37 6 168226966 168226966 + RNA SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . . . . . CGAACCGAACCTA . 207 12 87 1 . 0 0 0 0 0 AMZ1 155185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 2752257 2752257 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AMZ1-90 NM_133463 exon7 c.C1242A p.C414X CATGTGCATCCAG . 194 20 81 0 . 1 1 0 0 0 AP5Z1 9907 broad.mit.edu 37 7 4828476 4828476 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_014855 exon13 c.C1601T p.A534V GGTTGGCGCCACT . 210 8 15 0 . 0 0 0 0 0 C1GALT1 56913 broad.mit.edu;bcgsc.ca 37 7 7283285 7283285 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C1GALT1-90 NM_020156 exon4 c.C1019T p.P340L CCTTACCTGAACG . 140 53 86 1 . 46 25 21 0 0 MACC1 346389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20180669 20180669 + Missense_Mutation SNP G G C novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MACC1-93 NM_182762 exon7 c.C2459G p.P820R GTCACAGGGTTTT . 78 16 39 0 . 0 0 0 0 0 NUPL2 11097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 23240027 23240027 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NUPL2-228 NM_007342 exon7 c.G935T p.G312V GTTTTGGATCACC . 167 16 82 0 . 32 29 3 0 0 WIPF3 644150 broad.mit.edu 37 7 29923681 29923681 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WIPF3-69 NM_001080529 exon5 c.C571A p.P191T CCCCTTCCCTCTT . 23 8 11 1 . 1 1 0 0 0 BBS9 27241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 33423320 33423320 + Missense_Mutation SNP T T C novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BBS9-230 NM_198428 exon18 c.T1832C p.L611P TTTGGCTCATAAC . 104 15 54 0 . 9 8 1 0 0 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 70255405 70255405 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AUTS2-92 NM_015570 exon19 c.G3203T p.W1068L TCCACTGGGACCC . 76 7 51 0 . 0 0 0 0 0 RHBDD2 57414 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 75508485 75508485 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RHBDD2-90 NM_001040456 exon1 c.C85A p.L29M CTCTCGCTGCTGG . 170 44 65 1 . 211 149 62 0 0 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 77764344 77764344 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAGI2-461 NM_012301 exon17 c.C3025A p.Q1009K CCTCCTGAGGAAT . 189 45 132 0 . 0 0 0 0 0 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 77814971 77814971 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAGI2-461 NM_012301 exon13 c.G2286T p.R762S ACTGGTCCTGGGT . 177 18 148 0 . 0 0 0 0 0 GRM3 2913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 86394717 86394717 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRM3-528 NM_000840 exon2 c.C256A p.L86I TACTTGCTACCAG . 153 17 107 0 . 0 0 0 0 0 ABCB4 5244 broad.mit.edu;bcgsc.ca 37 7 87069022 87069022 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ABCB4-96 NM_018850 exon14 c.C1692A p.D564E TTCTGTGTCCAAT . 125 5 123 1 . 1 1 0 0 0 GTPBP10 85865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 90003657 90003657 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GTPBP10-68 NM_033107 exon6 c.G580T p.D194Y TACAGTGATTTCA . 69 15 57 0 . 0 0 0 0 0 LRRD1 401387 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 91792948 91792948 + Silent SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001161528 exon1 c.C1569T p.L523L AAATATGAGGAGT . 92 7 41 0 . 0 0 0 0 0 LRRD1 401387 ucsc.edu 37 7 91793876 91793876 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001161528 exon1 c.G641T p.R214M AATATCCTTAAAT . 168 26 130 2 . 0 0 0 0 0 KRIT1 889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 91864777 91864777 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRIT1-132 NM_194456 exon9 c.G669T p.E223D TGCTTTCTCTAGG . 99 13 74 0 . 8 6 2 0 0 ATP5J2-PTCD1 100526740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99023158 99023158 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001198879 exon7 c.G1144T p.G382C CTAGGCCACAGTC . 94 25 78 0 . 5 4 1 0 0 PVRIG 79037 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99817600 99817600 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PVRIG-24 NM_024070 exon2 c.C67A p.H23N ATGGGGCACCGGA . 309 76 231 1 . 3 2 1 0 0 MUC17 140453 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100674469 100674469 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MUC17-95 NM_001040105 exon2 c.C151A p.Q51K AACCGTCAGTGCC . 265 72 196 1 . 0 0 0 0 0 MUC17 140453 ucsc.edu;bcgsc.ca 37 7 100681947 100681947 + Missense_Mutation SNP A A T rs139220229 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MUC17-95 NM_001040105 exon3 c.A7250T p.H2417L GCACCCATTCCAC . 251 84 182 3 A|0.999;T|0.001 0 0 0 0 0 RELN 5649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 103180836 103180836 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RELN-574 NM_173054 exon44 c.G6738T p.V2246V TAGGAGCACGGGT . 107 37 55 0 . 0 0 0 0 0 RELN 5649 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 103243894 103243894 + Missense_Mutation SNP C C G rs114389730 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RELN-574 NM_173054 exon24 c.G3190C p.A1064P GAAGGGCAGCTTC . 137 43 115 1 C|0.998;T|0.002 0 0 0 0 0 ZNF277 11179 ucsc.edu 37 7 111927088 111927088 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF277-155 NM_021994 exon2 c.G252T p.K84N GCATAAGATTGTC . 178 21 118 4 . 6 6 0 0 0 IFRD1 3475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 112090794 112090794 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IFRD1-91 NM_001007245 exon2 c.C51A p.G17G TGCTGGCGGCGGC . 283 42 97 0 . 13 8 5 0 0 TFEC 22797 ucsc.edu;bcgsc.ca 37 7 115580883 115580883 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TFEC-153 NM_012252 exon8 c.C766A p.Q256K AATTCTGCTCAGG . 239 25 199 2 . 0 0 0 0 0 IQUB 154865 bcgsc.ca 37 7 123109376 123109376 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IQUB-156 NM_178827 exon9 c.C1473A p.F491L GATGGTGAACTGC . 114 42 99 4 . 0 0 0 0 0 POT1 25913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 124491967 124491967 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . POT1-227 NM_015450 exon11 c.C908A p.S303X ACATCTGAATGCT . 185 47 151 0 . 5 4 1 0 0 GRM8 2918 broad.mit.edu;ucsc.edu 37 7 126410002 126410002 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GRM8-581 NM_000845 exon6 c.C1274A p.P425H TATCCAGGGCAGA . 138 22 140 2 . 0 0 0 0 0 SND1 27044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127631020 127631020 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SND1-92 NM_014390 exon16 c.G1690T p.A564S AGAGGAGCCCGAA . 109 33 80 0 . 94 64 30 0 0 PLXNA4 91584 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 131872275 131872275 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLXNA4-91 NM_020911 exon15 c.G2948T p.S983I ACGTTGCTTCCGG . 116 26 91 2 . 0 0 0 0 0 PARP12 64761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139727101 139727101 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PARP12-525 NM_022750 exon10 c.C1603A p.L535M GGGCCAGGTTCTG . 184 46 169 0 . 17 10 7 0 0 TAS2R4 50832 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141478815 141478815 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAS2R4-90 NM_016944 exon1 c.C527A p.S176Y TCTTGTCTTTAGT . 202 23 135 1 . 0 0 0 0 0 EPHA1 2041 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143098540 143098540 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EPHA1-1436 NM_005232 exon3 c.G309T p.V103V GTCCCGCACGGTG . 170 20 134 1 . 0 0 0 0 0 ZNF212 7988 hgsc.bcm.edu 37 7 148936892 148936892 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF212-91 NM_012256 exon1 c.G23T p.R8L CTGCTCGGGTAAA . 56 18 4 0 . 0 0 0 0 0 SSPO 23145 hgsc.bcm.edu;broad.mit.edu 37 7 149499235 149499235 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_198455 exon51 c.G7603T p.G2535C CCAGGGGGCAGCT . 68 5 23 0 . 0 0 0 0 0 SSPO 23145 broad.mit.edu;bcgsc.ca 37 7 149503951 149503951 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_198455 exon60 c.C8775A p.G2925G CCCCGGCTGCACC . 116 35 66 1 . 0 0 0 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151879463 151879463 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MLL3-1398 NM_170606 exon36 c.G5482T p.E1828X ACAGTTCTTTATG . 158 41 142 0 . 2 1 1 0 0 EFHA2 286097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 16944544 16944544 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . EFHA2-91 NM_181723 exon7 c.G849T p.L283L AATGCTGGTAAGA . 28 5 57 0 . 0 0 0 0 0 BMP1 649 broad.mit.edu;bcgsc.ca 37 8 22064484 22064484 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BMP1-155 NM_006129 exon17 c.G2351T p.R784L GGCACCGGGTCAA . 242 9 356 0 . 0 0 0 0 0 ENTPD4 9583 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 23294562 23294562 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ENTPD4-92 NM_004901 exon10 c.C1259A p.P420Q TGAATTGGGGGCT . 116 33 149 1 . 10 6 4 0 0 NEFM 4741 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 24774959 24774959 + Nonsense_Mutation SNP G G T rs138461187 by1000genomes;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NEFM-577 NM_005382 exon3 c.G1591T p.E531X GAAGAAGAAGGCC . 63 11 88 1 G|0.999;A|0.001 11 10 1 0 0 PRKDC 5591 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 48790325 48790325 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PRKDC-1515 . . . . ATTCTTCCATGAC . 79 39 96 0 . 2 0 2 0 0 PCMTD1 115294 bcgsc.ca 37 8 52733102 52733102 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PCMTD1-68 NM_052937 exon6 c.C883T p.L295F GAATAAGCTGATT . 172 7 204 0 . 5 5 0 0 0 PCMTD1 115294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 52744112 52744112 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PCMTD1-68 NM_052937 exon5 c.C598A p.R200R CAGTTCGCATAAT . 38 7 40 0 . 7 7 0 0 0 SLCO5A1 81796 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 70591644 70591644 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLCO5A1-94 NM_001146008 exon7 c.G1993T p.A665S GTTGGGCACATGC . 185 78 207 1 . 0 0 0 0 0 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 72973992 72973992 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPA1-230 NM_007332 exon7 c.G812T p.G271V CACCTTCCCTTCT . 93 7 118 0 . 0 0 0 0 0 PI15 51050 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 75737605 75737605 + Missense_Mutation SNP G G C novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PI15-515 NM_015886 exon2 c.G121C p.E41Q GATATTGAAGCAG . 109 18 102 1 . 0 0 0 0 0 SLC10A5 347051 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 82607084 82607084 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC10A5-90 NM_001010893 exon1 c.G124T p.E42X TGGTTTCTTCAGT . 69 50 95 1 . 0 0 0 0 0 RMDN1 51115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 87519275 87519275 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_016033 exon2 c.G196T p.E66X AAGTTTCAAAACC . 78 34 92 0 . 7 7 0 0 0 KIAA1429 25962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 95538629 95538629 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KIAA1429-92 NM_015496 exon8 c.G1843T p.E615X AGGATTCCAAAAG . 59 8 66 0 . 3 1 2 0 0 GDF6 392255 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 97157039 97157039 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GDF6-228 NM_001001557 exon2 c.G1120A p.A374T GGGGCGCGATAAT . 159 10 140 0 . 0 0 0 0 0 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 100733234 100733234 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VPS13B-301 NM_017890 exon39 c.G7084T p.D2362Y ACAGAGGATCCAG . 84 35 71 0 . 2 2 0 0 0 UBR5 51366 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 103284937 103284937 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . UBR5-761 NM_015902 exon48 c.C6793A p.R2265R ATCTTCGACCAAA . 112 60 147 1 . 2 1 1 0 0 TRPS1 7227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 116632191 116632191 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPS1-229 NM_014112 exon3 c.G134T p.G45V TTCTTTCCAGATA . 85 36 109 0 . 0 0 0 0 0 SQLE 6713 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 126030309 126030309 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SQLE-523 NM_003129 exon8 c.C1213A p.L405I GTTCTTCTTTTGG . 36 32 50 1 . 1 0 1 0 0 THEM6 51337 broad.mit.edu;bcgsc.ca 37 8 143816819 143816819 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_016647 exon2 c.A589G p.M197V CTCCGCATGGAGA . 45 16 79 2 . 16 7 9 0 0 ZNF696 79943 hgsc.bcm.edu 37 8 144378868 144378868 + Silent SNP A A G rs7386259 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF696-90 NM_030895 exon3 c.A1023G p.R341R CCAGCGACTCCAC . 5 5 0 0 A|0.118;G|0.882 0 0 0 0 0 PYCRL 65263 bcgsc.ca 37 8 144687947 144687947 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PYCRL-90 NM_023078 exon6 c.C784A p.Q262K CGCCCTGCTCCAG . 96 44 53 2 . 20 4 16 0 0 SCRIB 23513 hgsc.bcm.edu 37 8 144874554 144874554 + Silent SNP T T C rs6991873 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SCRIB-228 NM_015356 exon32 c.A4350G p.P1450P CAGGGGTGGGGGG . 4 4 0 0 T|0.010;C|0.990 18 0 18 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144996263 144996263 + Silent SNP G G A rs11988293 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLEC-141 NM_201380 exon32 c.C8137T p.L2713L GCTCCAGCTGCTG . 32 31 4 0 G|0.958;A|0.042 12 1 11 0 0 SLC1A1 6505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 4583052 4583052 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SLC1A1-514 NM_004170 exon11 c.C1208A p.S403Y CCACATCTGCCAG . 103 17 102 0 . 3 3 0 0 0 ERMP1 79956 hgsc.bcm.edu 37 9 5832728 5832728 + Silent SNP G G C rs1131727 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ERMP1-69 NM_024896 exon1 c.C300G p.A100A TCCAGCGGCCCCG . 30 12 1 0 G|0.572;C|0.428 1 0 1 0 0 RANBP6 26953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 6013222 6013222 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RANBP6-229 NM_012416 exon1 c.G2386T p.E796X AGTGTTCATCATT . 83 24 64 0 . 14 6 8 0 0 LURAP1L 286343 hgsc.bcm.edu 37 9 12775864 12775864 + Silent SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_203403 exon1 c.C150T p.G50G TGGTGGCGGCGGC . 51 7 23 0 . 1 1 0 0 0 LURAP1L 286343 broad.mit.edu 37 9 12821687 12821687 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_203403 exon2 c.C615A p.S205R TGACAGCTCCCTC . 110 7 116 2 . 12 8 4 0 0 MPDZ 8777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 13176296 13176296 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MPDZ-231 NM_003829 exon20 c.G2770T p.G924W CAGGCCCCATACT . 137 11 108 0 . 0 0 0 0 0 MPDZ 8777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 13188983 13188983 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MPDZ-231 NM_003829 exon17 c.G2164T p.D722Y CTGGATCAATTGG . 74 16 54 0 . 0 0 0 0 0 BNC2 54796 broad.mit.edu;ucsc.edu 37 9 16437424 16437424 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . BNC2-92 NM_017637 exon6 c.C768A p.S256S CACAATGGATTTG . 47 7 61 1 . 0 0 0 0 0 MLLT3 4300 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 20414048 20414048 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MLLT3-660 NM_004529 exon5 c.G796T p.D266Y TACTATCTGGTTT . 243 31 155 1 . 8 5 3 0 0 FOCAD 54914 broad.mit.edu 37 9 20929356 20929356 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_017794 exon29 c.3079-1G>T . GTCCTAGAAGTCC . 71 12 52 1 . 1 0 1 0 0 IFNW1 3467 broad.mit.edu 37 9 21141179 21141179 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IFNW1-90 NM_002177 exon1 c.G391T p.E131X CAGATTCTCCTTC . 122 14 92 2 . 0 0 0 0 0 TUSC1 286319 hgsc.bcm.edu 37 9 25678122 25678122 + Silent SNP G G C rs72631814 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TUSC1-90 NM_001004125 exon1 c.C198G p.A66A CAGGTCGGCAAAC . 35 21 1 0 G|0.807;C|0.193 10 3 7 0 0 ACO1 48 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 32430444 32430444 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ACO1-226 NM_002197 exon14 c.C1598A p.S533Y TACTATCTGGAAA . 180 20 125 0 . 27 24 3 0 0 CNTFR 1271 broad.mit.edu;ucsc.edu 37 9 34568922 34568922 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CNTFR-518 NM_147164 exon3 c.G58T p.V20F CGTAGACAACTGC . 170 18 149 2 . 0 0 0 0 0 TPM2 7169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35682151 35682151 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TPM2-515 NM_213674 exon9 c.C782A p.A261D GCACTGGCCAAGG . 115 23 75 0 . 9 8 1 0 0 SPAG8 26206 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35810505 35810505 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SPAG8-91 NM_001039592 exon5 c.G1131T p.E377D CTCAACCTCGAAG . 148 34 102 1 . 1 1 0 0 0 RECK 8434 broad.mit.edu;bcgsc.ca 37 9 36102095 36102095 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RECK-93 NM_021111 exon12 c.G1303T p.D435Y AGATCAGATTGTG . 81 5 66 0 . 0 0 0 0 0 GLIPR2 152007 ucsc.edu 37 9 36147782 36147782 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GLIPR2-93 NM_022343 exon2 c.14-1G>T . ATTCCAGCTTCCA . 84 30 80 3 . 0 0 0 0 0 SPATA31A3 727830 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 40705691 40705691 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001083124 exon4 c.C3348A p.P1116P GAAGCCCAACTTA . 429 61 321 0 . 0 0 0 0 0 APBA1 320 hgsc.bcm.edu 37 9 72131953 72131953 + Silent SNP C C T rs149995729 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . APBA1-91 NM_001163 exon2 c.G174A p.E58E GAGGTCCTCGAGG . 14 8 0 0 C|0.995;T|0.005 0 0 0 0 0 MAMDC2 256691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 72741314 72741314 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAMDC2-91 NM_153267 exon6 c.G883T p.A295S TTCAGTGCTCCTT . 131 25 86 0 . 1 1 0 0 0 TRPM3 80036 broad.mit.edu 37 9 73240174 73240174 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPM3-521 NM_001007471 exon13 c.C1706A p.A569D CGATAAGCCCCGC . 69 3 96 0 . 0 0 0 0 0 TRPM6 140803 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77411734 77411734 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TRPM6-335 NM_017662 exon18 c.C2314A p.P772T ACTGGGGAACATG . 170 56 140 1 . 0 0 0 0 0 VPS13A 23230 ucsc.edu 37 9 79968553 79968553 + Missense_Mutation SNP A A G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VPS13A-161 NM_001018038 exon54 c.A7648G p.T2550A GGCATTACAAGGT . 239 29 207 3 . 0 0 0 0 0 C9orf3 84909 broad.mit.edu 37 9 97522087 97522087 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C9orf3-91 NM_001193331 exon2 c.G22T p.A8S GACCCTGCCAGAG . 115 18 97 2 . 0 0 0 0 0 ERCC6L2 375748 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 98728916 98728916 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001010895 exon14 c.C2053A p.H685N AAAGAGCATCAAG . 139 37 144 1 . 1 0 1 0 0 TDRD7 23424 broad.mit.edu;bcgsc.ca 37 9 100234690 100234690 + Silent SNP G G T rs200338871 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TDRD7-93 NM_014290 exon10 c.G1857T p.L619L TGTTCTGTACGAT . 195 9 170 1 G|1.000;A|0.000 8 8 0 0 0 GALNT12 79695 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 101606450 101606450 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GALNT12-92 NM_024642 exon8 c.C1417A p.Q473K GGACACCAGGTCA . 122 8 103 0 . 0 0 0 0 0 MRPL50 54534 broad.mit.edu;bcgsc.ca 37 9 104152827 104152827 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MRPL50-226 NM_019051 exon2 c.C398A p.P133H TGAATAGGGACAT . 208 7 140 0 . 62 60 2 0 0 OR13C5 138799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107361140 107361140 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . OR13C5-72 NM_001004482 exon1 c.G555T p.M185I CAGTTTCATGACA . 451 51 376 0 . 0 0 0 0 0 TAL2 6887 broad.mit.edu 37 9 108425002 108425002 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAL2-636 NM_005421 exon1 c.G225T p.L75L CATTCTGGGGCTC . 96 4 57 0 . 0 0 0 0 0 AKAP2 11217 hgsc.bcm.edu 37 9 112811038 112811038 + Missense_Mutation SNP C C T rs78923754 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AKAP2-24 NM_001004065 exon1 c.C59T p.P20L GACCCCCGGAGTC . 16 9 0 0 C|0.917;T|0.083 1 1 0 0 0 DNAJC25-GNG10 552891 hgsc.bcm.edu 37 9 114393784 114393784 + Missense_Mutation SNP G G A rs10980984 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DNAJC25-GNG10-159 NM_004125 exon1 c.G97A p.V33M CTGCTGGTGCGGC . 7 7 0 0 G|0.806;A|0.194 5 3 2 0 0 C9orf84 158401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 114508596 114508596 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . C9orf84-92 NM_173521 exon8 c.C805A p.L269I GGAATAGAGGAGT . 75 15 58 0 . 1 1 0 0 0 AMBP 259 broad.mit.edu 37 9 116840418 116840418 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AMBP-91 NM_001633 exon1 c.G72T p.T24T GGGCGGCGTTGGC . 114 12 75 1 . 1 1 0 0 0 PAPPA 5069 ucsc.edu;bcgsc.ca;mdanderson.org 37 9 118950037 118950037 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PAPPA-77 NM_002581 exon2 c.C1020A p.S340R TGCCAGCTACAAT . 160 36 130 2 . 0 0 0 0 0 PSMD5 5711 broad.mit.edu 37 9 123580434 123580434 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PSMD5-90 NM_005047 exon10 c.C1265A p.A422E TGGTTTGCAATGG . 62 6 34 0 . 0 0 0 0 0 PHF19 26147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 123624881 123624881 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PHF19-136 NM_015651 exon11 c.G1115T p.G372V CTCTTTCCTCTCT . 105 24 91 0 . 4 4 0 0 0 STXBP1 6812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 130427557 130427557 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . STXBP1-91 NM_001032221 exon8 c.C610A p.L204I GCTCAGCTAATCC . 133 22 140 0 . 15 13 2 0 0 TBC1D13 54662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131559410 131559410 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TBC1D13-90 NM_018201 exon7 c.G460T p.E154X CAGAATGAGTTTG . 133 39 98 0 . 23 20 3 0 0 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 134501621 134501621 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . RAPGEF1-849 NM_198679 exon10 c.G1393T p.G465W GCTGCCCTGGGGC . 172 51 128 0 . 22 18 4 0 0 VAV2 7410 broad.mit.edu;bcgsc.ca 37 9 136648640 136648640 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VAV2-1273 NM_001134398 exon19 c.C1708A p.P570T AGGGAGGTATCAC . 185 9 170 1 . 38 38 0 0 0 ARSH 347527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 2942061 2942061 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARSH-130 NM_001011719 exon6 c.902-1G>T . TCTCCAGGTAAAA . 272 59 205 0 . 0 0 0 0 0 MXRA5 25878 broad.mit.edu;bcgsc.ca 37 X 3241451 3241451 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MXRA5-136 NM_015419 exon5 c.G2275T p.A759S CTTCTGCAACATT . 151 7 92 0 . 3 3 0 0 0 MXRA5 25878 bcgsc.ca 37 X 3242694 3242694 + Missense_Mutation SNP C C A rs112265369 bycluster;byfrequency;alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MXRA5-136 NM_015419 exon5 c.G1032T p.K344N GTGAATCTTGTAC . 281 65 219 4 C|0.999;T|0.001 1 0 1 0 0 WWC3 55841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 10106875 10106875 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WWC3-134 NM_015691 exon21 c.C2983A p.Q995K CTGCGGCAGCGGT . 239 60 119 0 . 7 7 0 0 0 MID1 4281 ucsc.edu;bcgsc.ca 37 X 10535274 10535274 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MID1-229 NM_001193277 exon2 c.C314A p.A105D TCAAAGGCCCGCT . 219 126 163 2 . 0 0 0 0 0 FRMPD4 9758 bcgsc.ca 37 X 12736870 12736870 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . FRMPD4-263 NM_014728 exon16 c.G3925T p.D1309Y TTGAGAGATGGAT . 369 49 270 4 . 0 0 0 0 0 DDX53 168400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 23019100 23019100 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DDX53-228 NM_182699 exon1 c.C926A p.A309D AGTTGGCTCTTCA . 257 57 187 0 . 0 0 0 0 0 SUPT20HL1 100130302 ucsc.edu;bcgsc.ca 37 X 24382644 24382644 + Silent SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_001136234 exon1 c.C1767T p.P589P GCCCCCCACCAAA . 387 48 259 3 . 0 0 0 0 0 MAGEB10 139422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 27840275 27840275 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAGEB10-130 NM_182506 exon3 c.C852A p.S284R AACCAGCAAGATG . 116 15 80 0 . 0 0 0 0 0 MAGEB2 4113 broad.mit.edu;bcgsc.ca 37 X 30237541 30237541 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAGEB2-131 NM_002364 exon2 c.G844T p.E282X TATGCTGAAACCA . 245 15 211 2 . 0 0 0 0 0 DMD 1756 broad.mit.edu 37 X 31697546 31697546 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DMD-265 NM_004006 exon53 c.G7818T p.W2606C CTCCTTCCATGAC . 79 8 62 1 . 0 0 0 0 0 DMD 1756 broad.mit.edu;bcgsc.ca 37 X 32407761 32407761 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DMD-265 NM_004006 exon32 c.C4375A p.R1459R ATAATCGAAACTT . 109 6 68 0 . 0 0 0 0 0 MED14 9282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 40568698 40568698 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MED14-289 NM_004229 exon10 c.C1187A p.S396X TCTATTGATAAGT . 141 16 98 0 . 8 8 0 0 0 GPR34 2857 broad.mit.edu;bcgsc.ca 37 X 41554930 41554930 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR34-131 NM_001097579 exon3 c.G44T p.S15I TCAGCAGCTGGCC . 703 25 465 2 . 1 1 0 0 0 MAOA 4128 bcgsc.ca 37 X 43590512 43590512 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MAOA-194 NM_000240 exon7 c.G670T p.G224C GGATCTGGTCAAG . 267 25 223 3 . 80 70 10 0 0 CDK16 5127 ucsc.edu;bcgsc.ca 37 X 47086026 47086026 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDK16-564 NM_001170460 exon10 c.G1183T p.E395X TCCAATGAGGTGG . 302 58 246 4 . 118 91 27 0 0 ZNF182 7569 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 47836739 47836739 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZNF182-132 NM_006962 exon7 c.C747A p.L249L TACAATGAGGTGT . 85 20 53 1 . 6 3 3 0 0 TBC1D25 4943 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 48417292 48417292 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TBC1D25-131 NM_002536 exon4 c.G396T p.L132F CCCATTGCTAGAA . 232 16 184 1 . 1 1 0 0 0 WDR45 11152 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 48934319 48934319 + Missense_Mutation SNP C C T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . WDR45-131 NM_007075 exon6 c.G329A p.R110H CGCATGCGCACAG . 445 92 287 2 . 114 114 0 0 0 USP27X 389856 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49646192 49646192 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . USP27X-472 NM_001145073 exon1 c.G1282T p.E428X GAGTCAGAAAAAG . 336 68 243 1 . 17 17 0 0 0 CCNB3 85417 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 50052072 50052072 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CCNB3-482 NM_033031 exon5 c.G903T p.K301N TAGGAAGCCACCA . 144 26 86 1 . 1 1 0 0 0 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53607986 53607986 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . HUWE1-280 NM_031407 exon43 c.G5521T p.V1841F GAACAACCTAGTA . 129 21 87 0 . 0 0 0 0 0 AMER1 139285 ucsc.edu 37 X 63409906 63409906 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . . NM_152424 exon2 c.G3261T p.L1087L CCTGGGCAGCTGA . 354 42 208 4 . 1 1 0 0 0 MTMR8 55613 broad.mit.edu 37 X 63579298 63579298 + Missense_Mutation SNP C C A rs201096276 alternate_allele TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MTMR8-195 NM_017677 exon2 c.G134T p.R45L TCTTTCCGGGCTG . 82 5 59 1 . 0 0 0 0 0 AR 367 broad.mit.edu 37 X 66765161 66765161 + Missense_Mutation SNP A A T rs200185441 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . AR-661 NM_000044 exon1 c.A173T p.Q58L TGCTGCAGCAGCA . 74 4 35 0 . 0 0 0 0 0 YIPF6 286451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 67741213 67741213 + Splice_Site SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . YIPF6-130 NM_001195214 exon4 c.180-1G>T . TTCTCAGAATGCT . 153 82 84 0 . 0 0 0 0 0 YIPF6 286451 broad.mit.edu 37 X 67751770 67751770 + Missense_Mutation SNP C C G novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . YIPF6-130 NM_173834 exon7 c.C640G p.L214V AGAGCCCTAGCTG . 91 11 75 2 . 21 8 13 0 0 STARD8 9754 ucsc.edu;bcgsc.ca 37 X 67940921 67940921 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . STARD8-196 NM_001142503 exon9 c.C2205A p.I735I GCCCATCTTCACC . 355 87 227 3 . 1 0 1 0 0 MED12 9968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 70352313 70352313 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . MED12-272 NM_005120 exon31 c.C4340A p.A1447D AGGCTGCTGGGGA . 301 29 219 0 . 26 24 2 0 0 TAF1 6872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70596893 70596893 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAF1-900 NM_004606 exon5 c.C626A p.S209X CTGACTCAGAATC . 211 43 139 0 . 0 0 0 0 0 TAF1 6872 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 70598293 70598293 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TAF1-900 NM_004606 exon7 c.G1202T p.R401I AATCTAGAATGAT . 202 12 169 0 . 0 0 0 0 0 CDX4 1046 hgsc.bcm.edu;broad.mit.edu 37 X 72667507 72667507 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . CDX4-130 NM_005193 exon1 c.G418T p.D140Y CCGACGGACGCAG . 78 12 25 0 . 0 0 0 0 0 ATRX 546 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 76918898 76918898 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ATRX-248 NM_000489 exon12 c.G4093T p.E1365X TGACTTCTTTATG . 128 26 108 1 . 1 1 0 0 0 SATL1 340562 bcgsc.ca 37 X 84362768 84362768 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SATL1-175 NM_001012980 exon1 c.C1207A p.Q403K CTGATTGGCTGGT . 547 47 398 6 . 0 0 0 0 0 SYTL4 94121 bcgsc.ca 37 X 99941088 99941088 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . SYTL4-132 NM_001129896 exon14 c.G1348T p.G450C AACGACCATGATG . 157 42 139 4 . 0 0 0 0 0 NOX1 27035 ucsc.edu;bcgsc.ca 37 X 100105369 100105369 + Missense_Mutation SNP T T C rs35468984 byfrequency TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . NOX1-131 NM_013955 exon9 c.A904G p.M302V GGTGCATAACAAC . 320 38 245 2 T|0.691;0|0.003 0 0 0 0 0 XKRX 402415 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 100169962 100169962 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . XKRX-130 NM_212559 exon3 c.G715T p.E239X GGACTTCTAGTGG . 358 64 296 2 . 0 0 0 0 0 DRP2 1821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100500030 100500030 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . DRP2-132 NM_001939 exon10 c.G1079T p.R360I GGGAAAGAGCAAT . 314 41 218 0 . 0 0 0 0 0 VSIG1 340547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107320376 107320376 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . VSIG1-132 NM_001170553 exon8 c.C1037A p.T346N ATGAGACTGGCCC . 296 62 157 0 . 0 0 0 0 0 COL4A5 1287 broad.mit.edu;bcgsc.ca 37 X 107829959 107829959 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . COL4A5-133 NM_000495 exon19 c.G1147T p.G383C CCACCTGGCCTTC . 433 15 398 1 . 1 1 0 0 0 ALG13 79868 ucsc.edu;bcgsc.ca 37 X 110980045 110980045 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ALG13-130 NM_001099922 exon23 c.C2633A p.S878X CCACTTCAGTTTC . 263 64 204 3 . 5 5 0 0 0 ZBTB33 10009 broad.mit.edu;bcgsc.ca 37 X 119387850 119387850 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ZBTB33-132 NM_006777 exon2 c.G580T p.D194Y GATGATGATGTCA . 146 21 88 1 . 1 1 0 0 0 ELF4 2000 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 129205092 129205092 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ELF4-659 NM_001421 exon7 c.C732A p.S244S AGCTTTGGAGTCC . 147 13 101 3 . 8 3 5 0 0 IGSF1 3547 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 130411109 130411109 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . IGSF1-133 NM_001170961 exon14 c.G2427T p.Q809H CATATGCTGGTGG . 136 10 84 0 . 1 1 0 0 0 TFDP3 51270 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 132352122 132352122 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . TFDP3-131 NM_016521 exon1 c.C166A p.Q56K CCACTTGCTGGTC . 234 23 170 0 . 0 0 0 0 0 GPR112 139378 bcgsc.ca 37 X 135427145 135427145 + Missense_Mutation SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GPR112-183 NM_153834 exon6 c.C1280A p.A427E CTGGGGCACTCCC . 486 23 389 4 . 0 0 0 0 0 GABRQ 55879 bcgsc.ca 37 X 151821117 151821117 + Silent SNP C C A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . GABRQ-133 NM_018558 exon9 c.C1272A p.A424A GCAGGCCCAGCTG . 470 57 313 4 . 0 0 0 0 0 PNMA3 29944 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152226031 152226031 + Missense_Mutation SNP G G A novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PNMA3-600 NM_013364 exon2 c.G619A p.E207K CTGATGGAATGCT . 102 12 64 1 . 5 5 0 0 0 ATP2B3 492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152827696 152827696 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ATP2B3-109 NM_001001344 exon18 c.G3155T p.G1052V TCTGGGGACAGGT . 124 32 79 0 . 0 0 0 0 0 PLXNB3 5365 bcgsc.ca 37 X 153042778 153042778 + Missense_Mutation SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PLXNB3-130 NM_001163257 exon31 c.G5112T p.E1704D GCGCGAGCCAGCA . 369 27 186 2 . 1 1 0 0 0 ARHGAP4 393 bcgsc.ca 37 X 153184648 153184648 + Silent SNP G G T novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . ARHGAP4-227 NM_001164741 exon7 c.C891A p.V297V GTTACTGACAGCA . 298 16 188 2 . 0 0 0 0 0 KRTAP4-3 85290 bcgsc.ca 37 17 39324229 39324230 + In_Frame_Ins INS - - GCAGCAGGTGGTCAG novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . KRTAP4-3-22 NM_033187 exon1 c.196_197insCTGACCACCTGCTGC p.R66delinsLTTCCR TGGTCCTGCAGCA . 264 25 205 0 . 0 0 0 0 0 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42907077 42907078 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . LIPE-154 NM_005357 exon9 c.2649_2650insG p.G883fs GGAGTTTCCCCTC . 39 20 29 0 . 0 0 0 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241029 131241030 + In_Frame_Ins INS - - GGCGAC rs11277659 TCGA-OR-A5JA-01A-11D-A29I-10 TCGA-OR-A5JA-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a42d9ff4-e18c-401a-87f4-8485386a7f5c ae17be6a-90e4-4486-8dac-708ca0178f25 . PODXL-136 NM_005397 exon1 c.90_91insGTCGCC p.P30delinsPSP CTGGGAGGGCGAC . 37 0 2 0 . 0 0 0 0 0