Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	5	0	0	G|0.061;T|0.939	0	0	0	0	0
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92789534	92789534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPAP2-91	NM_024813	exon8	c.A1057T	p.S353C	GTGTCTAGTTCAG	.	95	73	123	0	.	1	0	1	0	0
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100376292	100376292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AGL-92	NM_000644	exon28	c.A3725C	p.D1242A	GAGTTGATGAAGA	.	108	73	159	0	.	3	1	2	0	0
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108291635	108291635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VAV3-1339	NM_006113	exon15	c.C1457G	p.T486R	TCTTTTGTTTTGC	.	28	4	38	0	.	0	0	0	0	0
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110884071	110884071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM15-661	NM_022768	exon1	c.G2044C	p.D682H	AGCCGGGATCGTT	.	117	86	119	0	.	1	0	1	0	0
DDX20	11218	hgsc.bcm.edu	37	1	112298829	112298829	+	Silent	SNP	T	T	C	rs197393		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DDX20-227	NM_007204	exon1	c.T283C	p.L95L	ATCCCGTTGGGGC	.	5	4	0	0	T|0.526;C|0.474	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	18	16	2	0	T|0.861;C|0.139	1	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152187065	152187065	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	HRNR-93	NM_001009931	exon3	c.G7040C	p.S2347T	CATGAGCTAGACT	.	1959	35	1687	1	.	0	0	0	0	0
LCE1F	353137	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	152749023	152749023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LCE1F-68	NM_178354	exon1	c.G176C	p.C59S	GGGGCTGCTGCAG	.	49	21	52	0	.	0	0	0	0	0
LCE1E	353135	bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	52	29	156	13	A|0.995;G|0.005	0	0	0	0	0
OBSCN	84033	broad.mit.edu	37	1	228473929	228473929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OBSCN-403	NM_001271223	exon39	c.A10442G	p.E3481G	TCAATGAGATCGA	.	226	4	222	1	.	1	1	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ANK3-107	NM_020987	exon41	c.G12682A	p.D4228N	ACCTGTCATCCAG	.	71	34	88	0	.	0	0	0	0	0
DDX50	79009	broad.mit.edu	37	10	70666540	70666540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DDX50-91	NM_024045	exon2	c.A161G	p.D54G	TTACAGATGACCT	.	355	7	338	1	.	11	11	0	0	0
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72489935	72489935	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS14-232	NM_080722	exon6	c.C1032G	p.R344R	GCAGCGCCAGGAC	.	141	75	103	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	13	13	0	0	A|0.009;G|0.991	1	0	1	0	0
SMC3	9126	broad.mit.edu	37	10	112356159	112356159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMC3-92	NM_005445	exon19	c.A1967G	p.D656G	TAGGTGACCAAGT	.	32	5	39	0	.	0	0	0	0	0
TTC40	54777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134623954	134623954	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001200049	exon57	c.G7623A	p.A2541A	AGGAGACGCACTG	.	318	171	272	2	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012429	+	Missense_Mutation	SNP	T	T	A	rs3008390		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KNDC1-229	NM_152643	exon14	c.T2417A	p.V806D	CTGGAGTTGCTTC	.	5	4	0	0	T|0.406;A|0.594	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	18	14	2	0	C|0.602;T|0.398	0	0	0	0	0
SERPING1	710	ucsc.edu;bcgsc.ca	37	11	57373627	57373627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SERPING1-650	NM_001032295	exon4	c.T830G	p.L277R	GCCGGCTGCTAGA	.	192	141	220	3	.	80	78	2	0	0
BEST1	7439	broad.mit.edu	37	11	61730553	61730553	+	Missense_Mutation	SNP	T	T	C	rs17185413	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BEST1-90	NM_001139443	exon9	c.T1747C	p.S583P	AAGTGTTCGGGAC	.	145	5	183	0	T|0.906;C|0.094	0	0	0	0	0
BSCL2	26580	broad.mit.edu;bcgsc.ca	37	11	62472840	62472840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BSCL2-514	NM_001122955	exon2	c.T337C	p.Y113H	AGCCATAGAGGAA	.	238	14	320	1	.	61	60	1	0	0
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67262351	67262351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PITPNM1-227	NM_004910	exon18	c.A2708G	p.K903R	TGCCACTTCTCCC	.	93	6	98	0	.	3	3	0	0	0
FGF4	2249	hgsc.bcm.edu	37	11	69589556	69589556	+	Silent	SNP	G	G	A	rs11600280	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FGF4-1270	NM_002007	exon1	c.C297T	p.L99L	GTCGGGGAGCGCC	.	9	9	0	0	G|0.967;A|0.033	0	0	0	0	0
H2AFX	3014	broad.mit.edu	37	11	118965789	118965789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	H2AFX-651	NM_002105	exon1	c.G316A	p.G106R	CGCCTCCCTGGGC	.	213	6	107	0	.	29	29	0	0	0
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3921573	3921573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PARP11-523	NM_020367	exon8	c.A733G	p.S245G	AACGACTGGAATA	.	82	40	64	0	.	16	9	7	0	0
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATN1-139	NM_001007026	exon5	c.G1476A	p.Q492Q	GCAGCAGCAGCAG	.	153	14	107	0	.	373	372	1	0	0
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	141	8	102	0	G|0.999;A|0.001	232	232	0	0	0
CLEC1A	51267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10223960	10223960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CLEC1A-91	NM_016511	exon6	c.C815A	p.P272H	TCAGGGGGGACAT	.	157	69	94	0	.	3	3	0	0	0
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13232844	13232844	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KIAA1467-92	NM_020853	exon12	c.G1764A	p.E588E	AATGGAGGGCCAG	.	251	122	177	0	.	6	2	4	0	0
HDAC7	51564	ucsc.edu;bcgsc.ca	37	12	48181875	48181875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	HDAC7-289	NM_015401	exon20	c.C2308T	p.R770C	CATGGCGATGCAG	.	525	198	357	3	.	53	25	28	0	0
KRT6B	3854	bcgsc.ca	37	12	52841672	52841672	+	Silent	SNP	C	C	T	rs142297644	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KRT6B-92	NM_005555	exon7	c.G1314A	p.K438K	GTCCTGCTTGGCC	.	369	38	199	5	C|0.998;T|0.002	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	14	14	0	0	A|0.273;G|0.727	2	0	2	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	28	28	0	0	C|0.752;T|0.248	2	0	2	0	0
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110226237	110226237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRPV4-94	NM_021625	exon13	c.T2176C	p.S726P	CCTTGGAGACCTG	.	201	44	150	0	.	1	1	0	0	0
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110960124	110960124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RAD9B-228	NM_152442	exon10	c.G1033C	p.A345P	AGCCCTGCAATGA	.	384	43	278	0	.	1	0	1	0	0
PPTC7	160760	broad.mit.edu	37	12	111020740	111020742	+	In_Frame_Del	DEL	CGC	CGC	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PPTC7-90	NM_139283	exon1	c.95_97del	p.32_33del	CGTAGTCGCCGCC	.	58	17	4	0	.	0	0	0	0	0
TPTE2	93492	bcgsc.ca	37	13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G	rs200244531		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE2-92	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	304	9	363	2	.	0	0	0	0	0
TPTE2	93492	bcgsc.ca	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE2-92	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA	.	286	9	350	3	.	0	0	0	0	0
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25341412	25341412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RNF17-228	NM_001184993	exon2	c.C133T	p.H45Y	ATAGGTCACCATT	.	81	64	101	0	.	0	0	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29599148	29599148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MTUS2-218	NM_001033602	exon1	c.C343A	p.Q115K	ACCATTCAGAGGG	.	64	19	81	0	.	0	0	0	0	0
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33716447	33716447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	STARD13-94	NM_178006	exon4	c.G387C	p.K129N	ACCTACCTTTTTC	.	56	40	61	0	.	0	0	0	0	0
LIG4	3981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108862298	108862298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LIG4-659	NM_206937	exon3	c.C1319G	p.P440R	TTGTCTGGCTTGT	.	60	42	52	0	.	10	0	10	0	0
SAMD4A	23034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55203812	55203812	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SAMD4A-90	NM_015589	exon3	c.A786T	p.P262P	TGTGCCAAACCAG	.	67	49	73	1	.	0	0	0	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68229079	68229079	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZFYVE26-162	NM_015346	exon34	c.C6210A	p.G2070G	GGCCATGCCCCAA	.	106	4	141	0	.	5	5	0	0	0
KCNK10	54207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652422	88652422	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KCNK10-95	NM_138318	exon7	c.C1089A	p.L363L	CACGCTGAGCCTT	.	155	110	133	1	.	0	0	0	0	0
SERPINA9	327657	bcgsc.ca	37	14	94933709	94933709	+	Silent	SNP	C	C	T	rs6575433	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SERPINA9-226	NM_175739	exon3	c.G693A	p.E231E	GGGCTTCTCCCAC	.	70	5	63	0	C|0.636;T|0.364	0	0	0	0	0
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49048340	49048340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEP152-70	NM_014985	exon20	c.C3105G	p.I1035M	CAGTTGGATCCGC	.	73	8	84	0	.	0	0	0	0	0
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62170946	62170946	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPS13C-92	NM_020821	exon75	c.10003-1G>T	.	ATGCAACTAAAAG	.	20	7	42	0	.	1	0	1	0	0
RPS2	6187	hgsc.bcm.edu	37	16	2014528	2014528	+	Silent	SNP	G	G	A	rs17135712	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPS2-90	NM_002952	exon2	c.C99T	p.I33I	GCCCCGGATGCCA	.	5	4	0	0	G|0.933;A|0.067	152	49	103	0	0
PRSS27	83886	broad.mit.edu	37	16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	136	28	52	9	.	2	2	0	0	0
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3293669	3293669	+	Silent	SNP	G	G	C	rs104895213	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MEFV-228	NM_000243	exon10	c.C1818G	p.T606T	GTAAGCGGTTTCT	.	117	51	89	0	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	15	9	1	0	G|0.570;T|0.430	0	0	0	0	0
SHISA9	729993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	12996322	12996322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001145204	exon1	c.C401G	p.P134R	GCAAGCCCCCCGC	.	167	34	113	0	.	0	0	0	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002486	30002486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TAOK2-521	NM_004783	exon19	c.C2747G	p.S916C	GCTTCTCCAGCAT	.	129	47	47	0	.	59	23	36	0	0
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu	37	16	53692791	53692791	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPGRIP1L-91	NM_001127897	exon12	c.1244-1G>A	.	TTTGATCTTAAAA	.	56	5	24	0	.	0	0	0	0	0
NLRC5	84166	bcgsc.ca	37	16	57093436	57093436	+	Missense_Mutation	SNP	G	G	T	rs117950337	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NLRC5-159	NM_032206	exon29	c.G3978T	p.K1326N	TGGGAAGACACTC	.	176	6	128	0	G|0.982;T|0.018	0	0	0	0	0
ATP2C2	9914	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84402268	84402268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATP2C2-91	NM_014861	exon1	c.C47T	p.S16L	GCTTCTCGGGCGG	.	218	36	81	1	.	0	0	0	0	0
COX4I1	1327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85838589	85838589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COX4I1-226	NM_001861	exon3	c.T120G	p.D40E	TATGGATCGGCGT	.	232	98	184	1	.	1204	587	616	1	0
ZNF469	84627	broad.mit.edu	37	16	88501034	88501034	+	Missense_Mutation	SNP	G	G	C	rs12598474	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001127464	exon2	c.G7072C	p.G2358R	GAGACCGGGCGCT	.	143	6	80	0	G|0.686;C|0.314	4	4	0	0	0
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88968048	88968048	+	Silent	SNP	T	T	C	rs76033980	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CBFA2T3-722	NM_005187	exon2	c.A168G	p.K56K	CTTAGCTTTCCTG	.	31	7	14	0	T|0.958;C|0.042	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	17	17	0	0	T|0.657;C|0.343	0	0	0	0	0
GUCY2D	3000	hgsc.bcm.edu	37	17	7906529	7906529	+	Missense_Mutation	SNP	C	C	T	rs201414567		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GUCY2D-319	NM_000180	exon2	c.C164T	p.T55M	TGTTCACGGTGGG	.	12	10	2	0	C|0.998;T|0.002	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	258	18	302	12	.	46	9	37	0	0
SUPT6H	6830	broad.mit.edu	37	17	27028024	27028024	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SUPT6H-93	NM_003170	exon36	c.G4872A	p.T1624T	CTACACGACCCCA	.	93	4	126	0	.	49	49	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	8	8	0	0	G|0.645;A|0.355	4	0	4	0	0
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47780364	47780364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SLC35B1-90	NM_005827	exon8	c.T772A	p.F258I	TCATAAAGATGAA	.	136	108	195	0	.	1	0	1	0	0
FASN	2194	bcgsc.ca	37	17	80039481	80039481	+	Silent	SNP	G	G	A	rs1140616	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FASN-90	NM_004104	exon37	c.C6402T	p.I2134I	ACCCAGGATGTGT	.	107	5	98	1	G|0.632;A|0.368	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28654754	28654754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DSC2-517	NM_024422	exon12	c.G1783T	p.V595F	CCGCAACAATCTC	.	181	128	228	0	.	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	39	26	0	0	G|0.966;A|0.034	0	0	0	0	0
BTBD2	55643	broad.mit.edu	37	19	1993163	1993163	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BTBD2-92	NM_017797	exon3	c.G540A	p.S180S	CTCGTCCGAGTAG	.	59	7	27	0	.	0	0	0	0	0
AMH	268	hgsc.bcm.edu	37	19	2251829	2251829	+	Missense_Mutation	SNP	C	C	T	rs200031151		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMH-130	NM_000479	exon5	c.C1556T	p.A519V	GGGCCGCCCTGGC	.	48	24	1	0	.	0	0	0	0	0
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2290685	2290685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001101391	exon2	c.T1091C	p.V364A	CGCTGCACGATCC	.	89	28	32	0	.	2	2	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	8	4	0	0	G|0.892;A|0.108	0	0	0	0	0
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5455609	5455609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNRF4-135	NM_181710	exon1	c.G107A	p.R36H	CCTCGCGTCCTGG	.	108	11	84	0	.	0	0	0	0	0
RDH8	50700	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	10127866	10127866	+	Missense_Mutation	SNP	T	T	G	rs2233793	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RDH8-94	NM_015725	exon2	c.T297G	p.C99W	CAGCTGTATCCAG	.	146	25	94	0	T|0.968;C|0.032	0	0	0	0	0
PSMD8	5714	hgsc.bcm.edu	37	19	38865440	38865440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PSMD8-68	NM_002812	exon1	c.G199T	p.A67S	GCGGCCGCGGCGG	.	64	4	7	0	.	57	57	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876758	38876758	+	Missense_Mutation	SNP	C	C	T	rs74911931		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GGN-90	NM_152657	exon3	c.G1144A	p.A382T	AGAGTGCGGCCGC	.	33	21	2	0	C|0.982;T|0.018	2	0	2	0	0
CIC	23152	broad.mit.edu;bcgsc.ca	37	19	42795085	42795085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CIC-591	NM_015125	exon10	c.C2165G	p.P722R	GCTCCCCGCTGGG	.	170	8	115	0	.	10	9	1	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	14	14	0	0	C|0.254;G|0.746	2	0	2	0	0
TPRX1	284355	broad.mit.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPRX1-90	NM_198479	exon2	c.618_629del	p.206_210del	GAGATTGGGCCTG	.	56	17	39	0	.	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	4	0	0	G|0.738;A|0.262	8	3	5	0	0
KIR3DL2	3812	broad.mit.edu;bcgsc.ca	37	19	55378056	55378056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KIR3DL2-92	NM_006737	exon9	c.G1238T	p.R413L	TCAGTCGCCCTTC	.	279	8	181	1	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	10	10	0	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	224	1	156	0	.	8	6	2	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	12	12	0	0	G|0.301;C|0.699	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	4	4	1	0	A|0.003;G|0.997	1	0	1	0	0
DHX57	90957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39050210	39050210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DHX57-228	NM_198963	exon17	c.G3216T	p.M1072I	AAACAACATTAGT	.	136	40	222	1	.	10	2	8	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	122	44	39	4	.	3	3	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642300	74642300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001145054	exon4	c.A923C	p.Y308S	GAGGGGTAGGACA	.	154	45	91	8	.	2	2	0	0	0
ANKRD39	51239	hgsc.bcm.edu	37	2	97523720	97523720	+	Missense_Mutation	SNP	G	G	A	rs200576046		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ANKRD39-44	NM_016466	exon1	c.C5T	p.A2V	GGCGTCGCCATCC	.	16	5	1	0	.	7	7	0	0	0
RBM45	129831	broad.mit.edu	37	2	178988920	178988920	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM45-22	NM_152945	exon8	c.1135delA	p.K379fs	TCATGCAAAAAAA	.	93	5	97	0	.	0	0	0	0	0
OSBPL6	114880	broad.mit.edu;bcgsc.ca	37	2	179251845	179251845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OSBPL6-69	NM_001201480	exon21	c.C2210T	p.T737I	TTGGAACACTGAA	.	109	5	136	0	.	6	6	0	0	0
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	187373328	187373328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZC3H15-91	NM_018471	exon10	c.G1149T	p.L383F	TGACTTGGAAGAG	.	113	79	175	1	.	109	2	107	0	0
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217285234	217285234	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMARCAL1-293	NM_014140	exon5	c.C1075T	p.Q359X	TTTAAACAGATGG	.	148	115	167	2	.	3	1	2	0	0
FAM134A	79137	hgsc.bcm.edu	37	2	220043233	220043233	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FAM134A-91	NM_024293	exon1	c.C159T	p.A53A	CCTGGCCACGACG	.	16	15	1	0	.	3	0	3	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	11	11	1	0	T|0.877;C|0.123	7	0	7	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	716	28	638	12	.	80	80	0	0	0
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34242149	34242149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM12-93	NM_001198840	exon2	c.C1096G	p.L366V	TCATCAGCATTCT	.	72	11	50	0	.	15	10	5	0	0
TTI1	9675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36641454	36641454	+	Silent	SNP	G	G	T	rs149287636	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TTI1-94	NM_014657	exon3	c.C765A	p.I255I	CTTTGAGATTCTT	.	81	17	64	1	G|1.000;A|0.000	2	1	1	0	0
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39831045	39831045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZHX3-93	NM_015035	exon3	c.G2512C	p.G838R	GTAGCCCTGGTGG	.	208	94	133	0	.	24	9	15	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	12	7	0	0	C|0.615;A|0.385	25	16	9	0	0
SEMG1	6406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43836226	43836226	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SEMG1-92	NM_003007	exon2	c.A288G	p.S96S	AAAATCACAACGA	.	246	116	184	0	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	7	7	0	0	T|0.311;C|0.689	7	0	7	0	0
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46290611	46290611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF2-293	NM_001161841	exon18	c.G2400C	p.R800S	GACATCCCTGTCC	.	242	93	126	0	.	710	334	374	1	1
APCDD1L	164284	hgsc.bcm.edu	37	20	57042377	57042377	+	Silent	SNP	G	G	A	rs6128351		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	APCDD1L-227	NM_153360	exon3	c.C526T	p.L176L	TCCGCAGCTCGTA	.	7	7	0	0	G|0.973;A|0.027	0	0	0	0	0
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10914373	10914373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE-344	NM_199261	exon21	c.G1346A	p.G449E	CATTTTCCTAATG	.	258	19	286	0	.	0	0	0	0	0
UMODL1	89766	ucsc.edu;bcgsc.ca	37	21	43547814	43547814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	UMODL1-93	NM_173568	exon19	c.T3947C	p.I1316T	ACGTGATTGAGAA	.	148	124	163	3	.	0	0	0	0	0
KRTAP12-2	353323	bcgsc.ca	37	21	46086377	46086377	+	Missense_Mutation	SNP	A	A	G	rs2838622	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_181684	exon1	c.T427C	p.S143P	AGGAAGAGATACT	.	345	11	363	5	A|0.429;G|0.571	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	10	10	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	12	12	0	0	G|0.826;C|0.174	0	0	0	0	0
ZNF280B	140883	bcgsc.ca	37	22	22842518	22842518	+	Silent	SNP	G	G	A	rs73156173	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNF280B-70	NM_080764	exon4	c.C1206T	p.P402P	CACATAGGGCATT	.	264	13	266	7	G|0.985;A|0.015	0	0	0	0	0
CX3CR1	1524	bcgsc.ca	37	3	39307256	39307256	+	Missense_Mutation	SNP	C	C	T	rs3732379	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CX3CR1-658	NM_001171174	exon2	c.G841A	p.V281I	TCATAACGTTGTA	.	169	6	198	0	C|0.832;T|0.168	1	1	0	0	0
FAM198A	729085	broad.mit.edu	37	3	43095101	43095101	+	Missense_Mutation	SNP	A	A	G	rs536119	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FAM198A-68	NM_001129908	exon3	c.A1379G	p.Q460R	AATGCCAGAACCC	.	134	4	162	1	T|0.179;G|0.318	0	0	0	0	0
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51457650	51457650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPRBP-92	NM_014703	exon14	c.C2615G	p.S872C	GGGGCAGAAGGCG	.	83	57	74	0	.	8	0	8	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	6	6	0	0	G|0.252;C|0.748	0	0	0	0	0
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134089857	134089857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMOTL2-135	NM_016201	exon2	c.G419T	p.S140I	CTCCGACTGCCTC	.	75	18	19	0	.	2	2	0	0	0
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	174814615	174814615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NAALADL2-47	NM_207015	exon2	c.C79T	p.Q27X	GCAGATCAAAGAG	.	131	102	131	0	.	0	0	0	0	0
SH3BP2	6452	bcgsc.ca	37	4	2826400	2826400	+	Silent	SNP	T	T	C	rs3213501	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SH3BP2-514	NM_001145856	exon4	c.T471C	p.H157H	CATCCATATCAGC	.	116	6	80	0	T|0.225;C|0.775	4	4	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	21	21	0	0	G|0.440;A|0.560	0	0	0	0	0
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725207	30725207	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDH7-229	NM_032457	exon1	c.C2163A	p.P721P	TCCTCCCAGATCT	.	189	79	147	0	.	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	12	5	0	0	G|0.853;T|0.147	0	0	0	0	0
RASGEF1B	153020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	82366716	82366716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RASGEF1B-227	NM_152545	exon8	c.A892C	p.N298H	CAATGTTAAAACA	.	139	58	117	0	.	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	8	7	0	0	C|0.324;A|0.676	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537126	88537126	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	346	28	164	3	.	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	6	4	0	0	T|0.352;C|0.648	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66429340	66429340	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAST4-647	NM_001164664	exon17	c.2094-2A>G	.	CCTCATAGCTTGT	.	251	41	159	0	.	0	0	0	0	0
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76717663	76717663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PDE8B-90	NM_003719	exon20	c.T2268G	p.C756W	CGACTGTGAATGC	.	278	36	173	1	.	17	16	1	0	0
ADAMTS19	171019	broad.mit.edu;bcgsc.ca	37	5	129037114	129037114	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS19-295	NM_133638	exon20	c.A2970T	p.R990R	TTCACGAACTTGT	.	348	9	250	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	11	11	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDHB2-96	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	233	11	45	1	.	17	17	0	0	0
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140764326	140764326	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_032087	exon1	c.G1860T	p.G620G	GGTTGGGCTGTAC	.	407	67	222	1	.	10	2	8	0	0
FLT4	2324	broad.mit.edu;bcgsc.ca	37	5	180048668	180048668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FLT4-1490	NM_182925	exon13	c.C1894A	p.R632S	CGTGGCGCGCCCC	.	303	130	50	1	.	5	5	0	0	0
SLC44A4	80736	bcgsc.ca	37	6	31842598	31842598	+	Missense_Mutation	SNP	T	T	A	rs12661281	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SLC44A4-156	NM_025257	exon6	c.A368T	p.D123V	CATGGGTCCTCCG	.	85	5	132	1	T|0.871;A|0.129	4	4	0	0	0
B3GAT2	135152	hgsc.bcm.edu	37	6	71665731	71665731	+	Silent	SNP	C	C	T	rs149577161		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	B3GAT2-93	NM_080742	exon1	c.G402A	p.G134G	GGGCAGCCCGGCC	.	19	16	0	0	C|0.993;T|0.007	0	0	0	0	0
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88229355	88229355	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RARS2-92	NM_020320	exon14	c.G1183C	p.D395H	AAACATCTTCCAG	.	147	104	205	0	.	43	0	43	0	0
NUS1	116150	broad.mit.edu;bcgsc.ca	37	6	118015275	118015275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NUS1-108	NM_138459	exon3	c.G623C	p.C208S	ACTTTTGCCAGTT	.	227	17	213	0	.	42	42	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	55	11	2	0	T|0.654;G|0.346	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	10	5	0	0	G|0.456;C|0.544	3	0	3	0	0
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	12664641	12664641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCIN-24	NM_001112706	exon6	c.G766C	p.D256H	GTTTCAGATGCAA	.	106	7	78	0	.	0	0	0	0	0
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38500996	38500996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMPH-95	NM_139316	exon11	c.C904T	p.P302S	GGACAGGAGGCCC	.	260	54	150	0	.	0	0	0	0	0
CDK13	8621	hgsc.bcm.edu	37	7	39990355	39990355	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CDK13-548	NM_003718	exon1	c.C115T	p.L39L	CCGCCGCTGCTGT	.	20	9	2	0	.	3	2	1	0	0
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94055328	94055328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL1A2-521	NM_000089	exon45	c.G2962C	p.G988R	CCTGTTGGTCCTG	.	124	46	95	0	.	63	63	0	0	0
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97821142	97821142	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LMTK2-1381	NM_014916	exon11	c.G1365A	p.L455L	CCGGCTGGGTCGT	.	204	33	124	1	.	3	1	2	0	0
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122130227	122130227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CADPS2-94	NM_001167940	exon11	c.G1760C	p.R587T	GTGGCCCTATACA	.	160	75	103	0	.	23	12	11	0	0
PAXIP1	22976	bcgsc.ca;mdanderson.org	37	7	154760666	154760666	+	Silent	SNP	C	C	A	rs61752011	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PAXIP1-228	NM_007349	exon7	c.G1245T	p.P415P	TAAAACCGGGTGC	.	69	30	43	1	C|0.784;T|0.216	1	0	1	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	15	14	2	0	T|0.642;G|0.358	0	0	0	0	0
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70533313	70533313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF1-518	NM_001128205	exon14	c.A1421T	p.H474L	GAATTCACAAGTG	.	133	21	86	0	.	0	0	0	0	0
SULF1	23213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70533314	70533314	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF1-518	NM_001128205	exon14	c.C1422T	p.H474H	AATTCACAAGTGT	.	135	22	88	1	.	0	0	0	0	0
EXT1	2131	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118816990	118816990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	EXT1-660	NM_000127	exon10	c.A2026G	p.K676E	ACTGCTTCTTCTG	.	358	76	195	2	.	124	98	26	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	15	14	0	0	.	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	4	4	0	0	G|0.108;T|0.892	43	0	43	0	0
RECQL4	9401	hgsc.bcm.edu	37	8	145738764	145738764	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RECQL4-1083	NM_004260	exon15	c.2300delT	p.V767fs	ACCACCACCCGGC	.	255	0	42	0	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	12	12	0	0	G|0.992;C|0.006	1	0	1	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214679	214679	+	Missense_Mutation	SNP	G	G	A	rs117856897	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	C9orf66-514	NM_152569	exon1	c.C718T	p.P240S	CCCCGGGCAGAGC	.	12	6	1	0	G|0.986;A|0.014	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832928	5832928	+	Missense_Mutation	SNP	G	G	C	rs13283149	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ERMP1-69	NM_024896	exon1	c.C100G	p.R34G	GCGCTCGGGCCTC	.	13	5	1	0	G|0.987;C|0.013	2	1	1	0	0
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33797865	33797865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRSS3-90	NM_007343	exon3	c.T410A	p.V137D	TCAAAGTCCTGGA	.	481	199	294	0	.	0	0	0	0	0
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117053185	117053185	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL27A1-94	NM_032888	exon48	c.C4464T	p.P1488P	GGGACCCCCAGGA	.	292	128	231	1	.	0	0	0	0	0
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475205	120475205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TLR4-577	NM_138554	exon3	c.G799A	p.G267R	AATGAAGGAAACT	.	68	18	74	0	.	1	0	1	0	0
RPL12	6136	bcgsc.ca	37	9	130211601	130211601	+	Missense_Mutation	SNP	G	G	T	rs149234502	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPL12-90	NM_000976	exon4	c.C251A	p.A84D	TTGAGGGCTTTGA	.	67	4	56	0	G|1.000;C|0.000	2312	2309	1	2	0
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134351358	134351358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRRC2B-24	NM_013318	exon15	c.C3842T	p.S1281F	AGAGATCCTTCTT	.	66	11	52	0	.	8	8	0	0	0
CEL	1056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135947102	135947102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEL-91	NM_001807	exon11	c.C2222T	p.P741L	TGCCCCCCACAGA	.	107	42	93	0	.	0	0	0	0	0
ABO	28	bcgsc.ca	37	9	136131415	136131415	+	RNA	SNP	C	C	T	rs8176743	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ABO-90	.	.	.	.	AGAAGCCGGGGTG	.	91	5	68	0	C|0.861;T|0.139	7	7	0	0	0
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137325961	137325961	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RXRA-188	NM_002957	exon9	c.C1149G	p.L383L	GGGGCTCTCGAAC	.	74	24	71	0	.	1	0	1	0	0
GPSM1	26086	hgsc.bcm.edu	37	9	139252666	139252666	+	Silent	SNP	G	G	A	rs200980257		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GPSM1-90	NM_001145638	exon14	c.G2022A	p.A674A	TGGTGCGAGCTAA	.	9	4	0	0	G|0.998;A|0.002	6	3	3	0	0
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139818401	139818401	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRAF2-660	NM_021138	exon10	c.G1236C	p.V412V	CTTTGTGGTGATG	.	187	79	138	0	.	16	11	5	0	0
LOC100873065	0	broad.mit.edu	37	X	23020626	23020629	+	RNA	DEL	GAGT	GAGT	-	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	.	.	.	.	ATGAGAGAGTGAG	.	435	8	289	0	.	0	0	0	0	0
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23754092	23754092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ACOT9-133	NM_001037171	exon2	c.G62A	p.G21E	GTCAGTCCTCTTC	.	210	93	151	0	.	24	24	0	0	0
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40496395	40496395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CXorf38-131	NM_144970	exon4	c.G485A	p.R162H	TCATTACGACATT	.	89	33	96	0	.	21	21	0	0	0
USP51	158880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	55515272	55515272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	USP51-659	NM_201286	exon2	c.C101T	p.A34V	TTCCCCGCCTTCT	.	79	9	53	0	.	5	5	0	0	0
TAF1	6872	broad.mit.edu;bcgsc.ca	37	X	70674672	70674672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TAF1-900	NM_004606	exon34	c.C4963A	p.L1655M	GAAAGCCTGGACC	.	217	11	203	1	.	28	28	0	0	0
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76875873	76875873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATRX-248	NM_000489	exon20	c.C5262A	p.N1754K	AATTAGGTTATTT	.	384	136	287	0	.	0	0	0	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090885	91090885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDH11X-193	NM_001168363	exon1	c.C382A	p.L128M	CGTTTTCTGATAG	.	342	57	240	1	.	0	0	0	0	0
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101139569	101139569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZMAT1-131	NM_001011657	exon7	c.T830C	p.F277S	GTCCGGAAAGTCT	.	149	24	106	0	.	16	15	1	0	0
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110973752	110973752	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ALG13-130	NM_001257230	exon21	c.2090-1G>C	.	TCTCTAGAGCCAG	.	164	37	137	0	.	0	0	0	0	0
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135303014	135303014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAP7D3-110	NM_024597	exon16	c.G2396A	p.R799H	TCTTTACGGACCT	.	158	53	98	0	.	7	7	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	13	10	2	0	-|0.389;CGC|0.611	0	0	0	0	0
SIRT6	51548	broad.mit.edu	37	19	4175089	4175090	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SIRT6-227	NM_016539	exon7	c.674_675insC	p.L225fs	AGCGGCAGGTTCC	.	272	12	75	0	.	0	0	0	0	0
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42262853	42262854	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SREBF2-154	NM_004599	exon2	c.107_108insT	p.S36fs	TTGTCAGTAATCA	.	84	22	92	0	.	0	0	0	0	0
MCC	4163	hgsc.bcm.edu;broad.mit.edu	37	5	112824033	112824034	+	In_Frame_Ins	INS	-	-	GCTGCC	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MCC-69	NM_001085377	exon1	c.79_80insGGCAGC	p.S27delinsGSS	TGCTGCTGCTGCT	.	77	43	19	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	40	15	53	0	.	0	0	0	0	0
TMEM255B	348013	bcgsc.ca	37	13	114471933	114471934	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	.	.	.	p.V69I	GTTGAGGTTCTTG	.	99	31	144	0	.	0	0	0	0	0