Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MTHFR	4524	bcgsc.ca	37	1	11863057	11863057	+	Silent	SNP	G	G	A	rs2066470	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MTHFR-90	NM_005957	exon2	c.C117T	p.P39P	CCGCTCGGGGTCC	.	55	4	81	0	G|0.910;A|0.090	0	0	0	0	0
CELA2B	51032	bcgsc.ca	37	1	15808767	15808767	+	Missense_Mutation	SNP	G	G	A	rs3820071	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CELA2B-91	NM_015849	exon4	c.G235A	p.G79R	TCCTCCGGGATCT	.	78	4	98	0	G|0.706;A|0.294	0	0	0	0	0
HSPG2	3339	bcgsc.ca	37	1	22165987	22165987	+	Missense_Mutation	SNP	G	G	A	rs2291827	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HSPG2-141	NM_005529	exon73	c.C9766T	p.H3256Y	GCCGGTGCTGCCA	.	90	5	159	0	G|0.871;A|0.129	4	4	0	0	0
AP4B1	10717	bcgsc.ca	37	1	114438951	114438951	+	Missense_Mutation	SNP	A	A	G	rs1217401	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AP4B1-93	NM_006594	exon9	c.T1439C	p.L480S	CGCAGCAAAGCAG	.	148	7	215	3	A|0.589;G|0.411	4	4	0	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145560086	145560086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANKRD35-95	NM_144698	exon8	c.T572C	p.I191T	CTTTGATCCTGGC	.	182	81	273	0	.	0	0	0	0	0
ATP1A4	480	bcgsc.ca	37	1	160134056	160134056	+	Missense_Mutation	SNP	G	G	A	rs17368402	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATP1A4-94	NM_144699	exon7	c.G889A	p.E297K	GAGATCGAACACT	.	236	11	299	0	G|0.934;A|0.066	0	0	0	0	0
TOR1AIP1	26092	bcgsc.ca	37	1	179877780	179877780	+	Missense_Mutation	SNP	A	A	C	rs17279712	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TOR1AIP1-153	NM_001267578	exon8	c.A882C	p.Q294H	CCCACAAACTGCA	.	88	4	117	0	A|0.955;C|0.045	3	3	0	0	0
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193119482	193119482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CDC73-1009	NM_024529	exon9	c.T877G	p.Y293D	AACAGATACGATC	.	55	25	89	0	.	2	0	2	0	0
CFHR1	3078	bcgsc.ca	37	1	196801042	196801042	+	Silent	SNP	G	G	T	rs4230	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CFHR1-90	NM_002113	exon6	c.G906T	p.R302R	TAAACGGGGATAT	.	64	8	427	4	G|0.520;T|0.480	6	6	0	0	0
CFHR1	3078	bcgsc.ca	37	1	196801078	196801078	+	Silent	SNP	A	A	T	rs61743621	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CFHR1-90	NM_002113	exon6	c.A942T	p.R314R	ATTGCGAACAACA	.	68	5	386	3	A|0.604;T|0.396	26	26	0	0	0
AVPR1B	553	broad.mit.edu	37	1	206224853	206224853	+	Missense_Mutation	SNP	A	A	C	rs148831426	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AVPR1B-569	NM_000707	exon1	c.A413C	p.H138P	TCTGTCACCCCCT	.	96	17	90	13	A|1.000;G|0.000	0	0	0	0	0
HLX	3142	hgsc.bcm.edu	37	1	221057963	221057963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLX-70	NM_021958	exon4	c.G1384A	p.E462K	GCCTCGGAGCTTC	.	24	22	4	0	.	15	11	4	0	0
DNAH14	127602	bcgsc.ca	37	1	225534219	225534219	+	Missense_Mutation	SNP	T	T	C	rs7527925	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	DNAH14-23	NM_001373	exon69	c.T10880C	p.V3627A	GCACTGTAATCAT	.	148	5	162	0	T|0.500;C|0.500	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912332	11912332	+	Missense_Mutation	SNP	C	C	T	rs12253554		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_153256	exon4	c.C1235T	p.A412V	AGTTCGCGGGCCG	.	7	4	0	0	C|0.935;T|0.065	0	0	0	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	77	7	67	0	.	0	0	0	0	0
NFKB2	4791	broad.mit.edu	37	10	104160223	104160223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NFKB2-522	NM_001077494	exon16	c.G1773T	p.Q591H	GCCCCAGCTGTTG	.	79	6	75	1	.	59	53	6	0	0
GPAM	57678	bcgsc.ca	37	10	113920465	113920465	+	Silent	SNP	G	G	A	rs2277207	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GPAM-92	NM_001244949	exon16	c.C1656T	p.N552N	CTCATCGTTCCTG	.	305	9	267	3	G|0.445;A|0.555	1	1	0	0	0
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	133951636	133951636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	JAKMIP3-23	NM_001105521	exon8	c.T1298A	p.L433Q	ACAAGCTGTTAAG	.	95	18	103	0	.	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MUC6-23	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC	.	1100	38	1925	43	.	0	0	0	0	0
RAPSN	5913	ucsc.edu	37	11	47469439	47469439	+	Silent	SNP	A	A	G	rs7111873	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RAPSN-91	NM_032645	exon2	c.T456C	p.Y152Y	GTGGGCATAGCGC	.	48	5	59	1	A|0.389;G|0.611	0	0	0	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64112394	64112394	+	Missense_Mutation	SNP	G	G	A	rs143386417		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC88B-94	NM_032251	exon14	c.G2381A	p.R794Q	GGCTGCGGGAGGC	.	14	9	0	0	G|0.991;A|0.009	0	0	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829294	73829294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	C2CD3-75	NM_015531	exon9	c.G1499C	p.R500T	GCTGACCTCTTCT	.	133	27	102	0	.	0	0	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829313	73829313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	C2CD3-75	NM_015531	exon9	c.G1480A	p.D494N	TATGATCACTTGA	.	141	32	116	0	.	0	0	0	0	0
PDZRN4	29951	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41966628	41966628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PDZRN4-296	NM_001164595	exon10	c.A2047G	p.I683V	CAGAATATCATGC	.	244	61	169	2	.	0	0	0	0	0
RACGAP1	29127	broad.mit.edu	37	12	50400412	50400412	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RACGAP1-227	NM_013277	exon5	c.C93T	p.I31I	CAACTGGATAAAT	.	61	6	36	0	.	0	0	0	0	0
HOXC11	3227	hgsc.bcm.edu	37	12	54367597	54367597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HOXC11-683	NM_014212	exon1	c.C572T	p.S191F	TGGCGTCCCGGGC	.	8	6	0	0	.	0	0	0	0	0
GLIPR1	11010	broad.mit.edu	37	12	75892747	75892747	+	Missense_Mutation	SNP	C	C	G	rs200527675	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GLIPR1-159	NM_006851	exon6	c.C790G	p.L264V	TTAGTTCTTTTGG	.	48	3	30	0	C|0.999;A|0.001	29	29	0	0	0
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25016762	25016762	+	Missense_Mutation	SNP	G	G	A	rs113301501	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PARP4-94	NM_006437	exon29	c.C3509T	p.T1170I	AATTGTGTTATGA	.	138	22	77	2	G|0.935;A|0.065	4	4	0	0	0
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42874405	42874405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AKAP11-227	NM_016248	exon8	c.A1523G	p.H508R	CCCACCATACTAA	.	75	20	51	0	.	0	0	0	0	0
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	49281360	49281360	+	Missense_Mutation	SNP	G	G	A	rs201503697		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CYSLTR2-278	NM_020377	exon1	c.G407A	p.R136H	TTGTGCGTTTCCT	.	116	32	99	0	.	0	0	0	0	0
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45403706	45403706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KLHL28-91	NM_017658	exon3	c.A955G	p.I319V	GAGGAATGTTTAG	.	132	47	100	0	.	1	1	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45639809	45639809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FANCM-569	NM_020937	exon12	c.C2020A	p.L674I	AGTAGCCTAAAGA	.	106	34	98	0	.	0	0	0	0	0
FBXO34	55030	bcgsc.ca	37	14	55818706	55818706	+	Missense_Mutation	SNP	T	T	C	rs3742569	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FBXO34-228	NM_017943	exon2	c.T1598C	p.L533P	TTGTACTGCCAGC	.	149	8	202	2	T|0.582;C|0.418	1	1	0	0	0
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96800204	96800204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATG2B-93	NM_018036	exon8	c.C1028G	p.S343C	TTGCTAGAATTTT	.	41	15	19	0	.	0	0	0	0	0
MIR323B	574410	bcgsc.ca	37	14	101522556	101522556	+	RNA	SNP	T	T	C	rs56103835	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	.	.	.	.	ACCTCATGGTACT	.	277	8	331	1	T|0.731;C|0.269	0	0	0	0	0
EIF2AK4	440275	bcgsc.ca	37	15	40259848	40259848	+	Missense_Mutation	SNP	A	A	C	rs2291627	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	EIF2AK4-757	NM_001013703	exon9	c.A1321C	p.I441L	GTCAAGATTACGG	.	122	6	184	2	C|0.219;N|0.000	0	0	0	0	0
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu	37	16	3169885	3169896	+	In_Frame_Del	DEL	CACCCACCAGGG	CACCCACCAGGG	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	CACCCACCAGGG	CACCCACCAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ZNF205-90	NM_003456	exon7	c.1224_1235del	p.408_412del	CTTGGTCACCCAC	.	117	52	8	0	.	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19492710	19492710	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TMC5-91	NM_001105249	exon15	c.G2286C	p.L762L	GCAACTGATCACA	.	248	50	210	0	.	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0
CDH5	1003	bcgsc.ca	37	16	66432424	66432424	+	Silent	SNP	C	C	T	rs3826229	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CDH5-525	NM_001795	exon10	c.C1551T	p.I517I	ATTCATCTTGAAT	.	289	9	240	3	A|0.000;C|0.632;G|0.000;T|0.368	0	0	0	0	0
ALOX15	246	bcgsc.ca	37	17	4536241	4536241	+	Silent	SNP	T	T	C	rs743646	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ALOX15-229	NM_001140	exon11	c.A1455G	p.T485T	CACGTCTGTCTTA	.	127	6	126	0	T|0.920;C|0.080	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254133	39254133	+	Missense_Mutation	SNP	G	G	T	rs200462175		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_031960	exon1	c.C204A	p.S68R	ACAGCAGCTGGGG	.	87	16	22	1	.	0	0	0	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274311	39274311	+	Missense_Mutation	SNP	T	T	C	rs425755		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_033059	exon1	c.A257G	p.K86R	TGGGGCTTGCAGC	.	145	29	43	2	.	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274319	39274319	+	Missense_Mutation	SNP	G	G	C	rs199712484		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_033059	exon1	c.C249G	p.S83R	GCAGCAGCTGGAC	.	155	28	39	0	.	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296412	39296412	+	Missense_Mutation	SNP	T	T	A	rs200470462		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_030976	exon1	c.A328T	p.S110C	AGATGCTGCAGCT	.	162	27	54	1	.	0	0	0	0	0
KRTAP4-5	85289	ucsc.edu;bcgsc.ca	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KRTAP4-5-90	NM_033188	exon1	c.T235A	p.C79S	AGCAGCAGGGGCG	.	83	20	21	0	A|0.354;T|0.646	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	82	7	30	0	.	0	0	0	0	0
ICT1	3396	hgsc.bcm.edu	37	17	73008804	73008804	+	Missense_Mutation	SNP	G	G	T	rs3744206	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ICT1-91	NM_001545	exon1	c.G23T	p.R8L	GCCTGCGCTGGGG	.	19	15	1	0	C|0.010;G|0.987;T|0.003	14	1	13	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096344	79096344	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AATK-933	NM_001080395	exon11	c.C1392T	p.D464D	CAGCACGTCGTCG	.	15	9	4	0	.	0	0	0	0	0
TSHZ1	10194	bcgsc.ca	37	18	72998268	72998268	+	Silent	SNP	T	T	C	rs3744909	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TSHZ1-90	NM_005786	exon2	c.T771C	p.D257D	GGAGGATGCCCAG	.	117	5	280	3	T|0.676;C|0.324	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9003645	9003645	+	Missense_Mutation	SNP	G	G	A	rs11085777	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MUC16-566	NM_024690	exon49	c.C39995T	p.T13332I	AGGTTAGTGATGG	.	341	11	284	0	G|0.687;A|0.313	0	0	0	0	0
NDUFB7	4713	bcgsc.ca	37	19	14677691	14677691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NDUFB7-91	NM_004146	exon2	c.G167A	p.R56Q	TAGTCCCGCAGCT	.	67	4	47	0	.	775	775	0	0	0
OR10H3	26532	bcgsc.ca	37	19	15852363	15852363	+	Missense_Mutation	SNP	G	G	A	rs11670007	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	OR10H3-68	NM_013938	exon1	c.G161A	p.R54H	TTGAACGCAGACT	.	340	10	295	1	G|0.700;A|0.300	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	6	6	0	0	G|0.540;T|0.460	0	0	0	0	0
ACTN4	81	ucsc.edu;bcgsc.ca	37	19	39214253	39214253	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ACTN4-90	NM_004924	exon13	c.1443-1G>T	.	CCCGCAGCGAGCT	.	560	135	440	2	.	15	0	15	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	7	5	0	0	T|0.545;C|0.455	0	0	0	0	0
CYP2A7	1549	bcgsc.ca	37	19	41386527	41386527	+	Missense_Mutation	SNP	G	G	A	rs58798281	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CYP2A7-93	NM_000764	exon3	c.C350T	p.A117V	CTGAACGCCACGC	.	142	55	23	1	G|0.531;A|0.469	0	0	0	0	0
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42603760	42603760	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	POU2F2-227	NM_002698	exon7	c.G420A	p.P140P	TGGTGTCGGTAGC	.	166	33	127	0	.	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu	37	19	44098975	44098975	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IRGQ-92	NM_001007561	exon2	c.A516G	p.A172A	CGCTTCTGCCTGG	.	59	8	6	0	.	0	0	0	0	0
ZNF226	7769	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44680489	44680489	+	Silent	SNP	G	G	C	rs2178342	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001032372	exon6	c.G1074C	p.T358T	CCACACGGCAGAG	.	219	54	180	1	G|0.865;A|0.135	9	6	3	0	0
ZNF814	730051	ucsc.edu	37	19	58384418	58384418	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001144989	exon3	c.T2340C	p.S780S	AGCGAAAGATTTT	.	77	1	50	0	.	26	21	5	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	223	1	163	0	.	12	10	2	0	0
NRXN1	9378	hgsc.bcm.edu	37	2	51255090	51255090	+	Missense_Mutation	SNP	G	G	A	rs199784029		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NRXN1-92	NM_004801	exon2	c.C322T	p.P108S	TAACCGGCGTGTC	.	9	8	0	0	G|0.999;A|0.001	0	0	0	0	0
TEKT4	150483	hgsc.bcm.edu	37	2	95539831	95539831	+	Missense_Mutation	SNP	T	T	C	rs199573327		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TEKT4-155	NM_144705	exon3	c.T691C	p.Y231H	CATCCGTACTCCA	.	120	12	169	0	T|0.998;C|0.002	0	0	0	0	0
IL1RL1	9173	bcgsc.ca	37	2	102968007	102968007	+	Missense_Mutation	SNP	G	G	A	rs4988956	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IL1RL1-517	NM_016232	exon11	c.G1297A	p.A433T	GTCACTGCAGTGG	.	149	8	217	2	G|0.541;A|0.459	0	0	0	0	0
TUBA3E	112714	broad.mit.edu	37	2	130951625	130951625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TUBA3E-69	NM_207312	exon4	c.790delC	p.R264fs	GGATGCGGGGGTA	.	383	8	492	0	.	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179558366	179558366	+	Missense_Mutation	SNP	T	T	C	rs2042995	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TTN-636	NM_001267550	exon119	c.A31564G	p.I10522V	TGGAAATGGCAAC	.	86	5	118	1	T|0.582;C|0.418	0	0	0	0	0
SH3BP4	23677	bcgsc.ca	37	2	235951819	235951819	+	Silent	SNP	A	A	G	rs3795962	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SH3BP4-94	NM_014521	exon4	c.A2406G	p.L802L	CGTCCTAGAAAAG	.	217	7	379	4	G|0.647;N|0.001	2	2	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	251	15	167	0	.	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	.	.	.	.	CTGCAGCCTTCCT	.	68	3	16	0	.	1	1	0	0	0
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43727858	43727858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KCNS1-90	NM_002251	exon3	c.G20A	p.R7Q	GTTCCCCGGACCA	.	110	19	102	0	.	0	0	0	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58441568	58441568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SYCP2-525	NM_014258	exon39	c.A4202C	p.H1401P	CTTTGATGATTCA	.	42	9	38	0	.	1	1	0	0	0
BAGE2	85319	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_182482	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	331	11	331	5	C|0.750;T|0.250	0	0	0	0	0
COL6A1	1291	broad.mit.edu	37	21	47401845	47401850	+	In_Frame_Del	DEL	GGCCGT	GGCCGT	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	COL6A1-91	NM_001848	exon1	c.81_86del	p.27_29del	CCCGAGGGCCGTG	.	120	8	9	0	.	0	0	0	0	0
TFIP11	24144	bcgsc.ca	37	22	26888060	26888060	+	Silent	SNP	G	G	A	rs17850763	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TFIP11-90	NM_001008697	exon16	c.C2433T	p.I811I	CCGGTCGATGTAG	.	158	9	388	5	G|0.972;A|0.028	18	18	0	0	0
TRANK1	9881	broad.mit.edu	37	3	36874077	36874077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TRANK1-24	NM_014831	exon21	c.G6865T	p.A2289S	GCATGGCACTCAG	.	69	6	51	2	.	0	0	0	0	0
TGM4	7047	bcgsc.ca	37	3	44926931	44926931	+	Missense_Mutation	SNP	G	G	A	rs115097986		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TGM4-91	NM_003241	exon2	c.G134A	p.R45Q	ACCTGCGGCTGGT	.	234	7	277	3	G|0.999;A|0.001	0	0	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46008087	46008087	+	Silent	SNP	G	G	A	rs13079869	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FYCO1-91	NM_024513	exon8	c.C2739T	p.C913C	CAGTGCGCAAACC	.	172	6	146	1	G|0.920;A|0.080	0	0	0	0	0
BOC	91653	bcgsc.ca	37	3	112991312	112991312	+	Silent	SNP	C	C	T	rs3814398	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	BOC-157	NM_033254	exon7	c.C723T	p.I241I	CATCATCGTCACC	.	232	8	235	2	C|0.788;T|0.212	0	0	0	0	0
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160148837	160148837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SMC4-291	NM_005496	exon19	c.C2958G	p.I986M	AGAGATCCAGAAA	.	156	48	114	0	.	19	17	2	0	0
ZFYVE28	57732	bcgsc.ca	37	4	2275835	2275835	+	Silent	SNP	G	G	A	rs2051561	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ZFYVE28-93	NM_020972	exon9	c.C2160T	p.F720F	GCCGTGGAACCTG	.	210	9	274	2	G|0.576;A|0.424	14	14	0	0	0
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3388163	3388163	+	Silent	SNP	C	C	T	rs147432997	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RGS12-226	NM_002926	exon4	c.C2019T	p.G673G	TGATGGCGGTAAG	.	54	14	36	0	C|0.999;T|0.001	0	0	0	0	0
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42466787	42466787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATP8A1-92	NM_006095	exon27	c.C2539T	p.H847Y	CACCATGAATCAT	.	152	37	127	0	.	1	1	0	0	0
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89589214	89589214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HERC3-660	NM_014606	exon14	c.A1615T	p.N539Y	GATACAAACCCCA	.	51	7	52	0	.	2	2	0	0	0
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	166981201	166981201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TLL1-158	NM_012464	exon15	c.C1868A	p.T623N	TTCTTACCAAACT	.	32	6	36	0	.	0	0	0	0	0
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173961210	173961210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GALNTL6-137	NM_001034845	exon13	c.A1765G	p.M589V	ATTAATATGACTG	.	55	14	50	0	.	0	0	0	0	0
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183609360	183609360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001080477	exon11	c.G2077C	p.G693R	TGCATGGGGGGGA	.	39	17	50	0	.	0	0	0	0	0
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183710523	183710523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001080477	exon24	c.G5582A	p.S1861N	CATGGAGTTACAC	.	266	66	245	1	.	0	0	0	0	0
WWC2	80014	bcgsc.ca	37	4	184236868	184236868	+	Missense_Mutation	SNP	G	G	A	rs4862155	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	WWC2-93	NM_024949	exon23	c.G3565A	p.A1189T	CTGCCAGCTGATG	.	114	5	84	0	G|0.953;A|0.047	1	1	0	0	0
ANKH	56172	bcgsc.ca	37	5	14769103	14769103	+	Silent	SNP	G	G	A	rs17251667	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANKH-91	NM_054027	exon2	c.C294T	p.A98A	AAAGACGGCAGCG	.	170	7	260	1	G|0.877;A|0.123	0	0	0	0	0
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	53839018	53839018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SNX18-226	NM_001102575	exon2	c.C1631A	p.T544N	CTCTTACCAAAGT	.	209	64	129	1	.	0	0	0	0	0
FAM172A	83989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93111872	93111872	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FAM172A-90	NM_032042	exon10	c.C1101T	p.V367V	TGCTGAGACCCGG	.	428	64	238	0	.	0	0	0	0	0
KCTD16	57528	broad.mit.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KCTD16-137	NM_020768	exon4	c.1141delA	p.K381fs	AGCAGCAAAAAAA	.	164	7	73	0	.	0	0	0	0	0
ANXA6	309	broad.mit.edu;bcgsc.ca	37	5	150503872	150503872	+	Silent	SNP	C	C	T	rs138779149	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANXA6-22	NM_001155	exon15	c.G1113A	p.A371A	CCGCAGCGCTTTG	.	170	6	109	0	C|0.997;T|0.003	124	124	0	0	0
FAT2	2196	bcgsc.ca	37	5	150908812	150908812	+	Missense_Mutation	SNP	C	C	T	rs7718054	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FAT2-96	NM_001447	exon14	c.G9953A	p.R3318Q	TGGGGCCGGTGTT	.	235	6	145	0	C|0.927;T|0.073	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	6	6	0	0	G|0.000;C|1.000	2	0	2	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	7	7	1	0	G|0.546;T|0.454	0	0	0	0	0
BTN3A1	11119	broad.mit.edu;bcgsc.ca	37	6	26408132	26408132	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	BTN3A1-92	NM_007048	exon4	c.A667T	p.R223X	ACCATCAGAAGTT	.	185	9	238	0	.	3	3	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910622	29910622	+	Silent	SNP	C	C	T	rs199501996	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLA-A-92	NM_001242758	exon2	c.C162T	p.D54D	GGACGACACGCAG	.	180	35	53	1	C|0.998;T|0.002	1111	1111	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910688	29910688	+	Missense_Mutation	SNP	A	A	G	rs41544012	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLA-A-92	NM_001242758	exon2	c.A228G	p.I76M	GTGGATAGAGCAG	.	211	25	176	2	A|0.885;G|0.115	350	349	1	0	0
HLA-A	3105	bcgsc.ca	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLA-A-92	NM_001242758	exon2	c.A233G	p.Q78R	TAGAGCAGGAGGG	.	211	23	178	1	A|0.979;G|0.021	347	347	0	0	0
IP6K3	117283	bcgsc.ca	37	6	33703230	33703230	+	Silent	SNP	G	G	A	rs545787	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IP6K3-240	NM_001142883	exon3	c.C24T	p.D8D	CCCGGCGTCTGCG	.	64	5	76	1	G|0.599;A|0.401	0	0	0	0	0
TULP1	7287	bcgsc.ca	37	6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G	rs2064318	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TULP1-92	NM_003322	exon8	c.G783C	p.K261N	ATTGCTCTTCTTT	.	107	8	114	1	C|0.349;G|0.651	2	2	0	0	0
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	75968594	75968594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TMEM30A-90	NM_018247	exon6	c.C794T	p.A265V	GGTAATGCTGCAG	.	129	9	126	0	.	3	3	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129691085	129691085	+	Nonsense_Mutation	SNP	G	G	T	rs138303386	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	LAMA2-162	NM_000426	exon34	c.G4909T	p.E1637X	CTGGCAGAGGGCA	.	69	4	50	0	G|1.000;A|0.000	0	0	0	0	0
IGF2R	3482	ucsc.edu	37	6	160454109	160454109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IGF2R-118	NM_000876	exon9	c.C1181A	p.A394E	TCAAAGCAGCAGG	.	45	4	48	0	.	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	8	8	0	0	G|0.796;C|0.204	0	0	0	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592576	167592576	+	Silent	SNP	G	G	A	rs60976240	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001145121	exon6	c.G735A	p.T245T	CGCCACGCTGCAG	.	90	4	72	0	G|0.425;A|0.575	0	0	0	0	0
TBP	6908	mdanderson.org	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TBP-91	NM_003194	exon3	c.G219A	p.Q73Q	GCAACAGCAACAG	.	56	13	48	0	.	441	436	5	0	0
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42971992	42971992	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MRPL32-90	NM_031903	exon1	c.C7T	p.L3L	ATGGCGCTGGCCA	.	110	24	86	0	.	23	17	6	0	0
AZGP1	563	broad.mit.edu;bcgsc.ca	37	7	99564732	99564732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AZGP1-515	NM_001185	exon4	c.C791T	p.S264F	ACCCAGGACTGGT	.	349	14	238	1	.	0	0	0	0	0
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122056123	122056123	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CADPS2-94	NM_001167940	exon19	c.C2593G	p.H865D	CTGCATGATGCTC	.	59	12	46	0	.	0	0	0	0	0
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123105042	123105042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IQUB-156	NM_178827	exon10	c.C1603T	p.Q535X	TTTCCTGAGTTAG	.	68	12	57	0	.	0	0	0	0	0
OR6B1	135946	bcgsc.ca	37	7	143701516	143701516	+	Missense_Mutation	SNP	C	C	T	rs7787378	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	OR6B1-91	NM_001005281	exon1	c.C427T	p.R143C	TGCTTCCGCCTCG	.	223	7	152	0	C|0.853;N|0.000	0	0	0	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882673	143882673	+	Missense_Mutation	SNP	C	C	T	rs62484795		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_198495	exon1	c.C2077T	p.L693F	CCTGGCCTTATTC	.	95	4	57	1	.	1	0	1	0	0
PDIA4	9601	hgsc.bcm.edu	37	7	148725417	148725417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PDIA4-524	NM_004911	exon1	c.C84A	p.D28E	ACCCTCGTCCGGG	.	11	4	0	0	.	0	0	0	0	0
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121290694	121290694	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	COL14A1-543	NM_021110	exon28	c.C3358T	p.R1120X	TATGTTCGAGATA	.	241	44	163	2	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	9	9	0	0	C|0.731;T|0.269	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	7	5	0	0	G|0.572;C|0.428	0	0	0	0	0
NTRK2	4915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87570307	87570307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NTRK2-1404	NM_006180	exon19	c.C2047G	p.L683V	GTCTACCTGGCGT	.	130	30	108	1	.	0	0	0	0	0
SVEP1	79987	bcgsc.ca	37	9	113261483	113261483	+	Missense_Mutation	SNP	C	C	T	rs872665	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SVEP1-75	NM_153366	exon7	c.G1519A	p.V507I	TGATGACATCTTT	.	160	6	149	0	C|0.731;T|0.269	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127230891	127230891	+	Missense_Mutation	SNP	G	G	A	rs10760365	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001161808	exon14	c.G2248A	p.V750M	AGGAAGGTGGTAG	.	88	3	86	0	G|0.465;A|0.535	0	0	0	0	0
GPR144	347088	broad.mit.edu;bcgsc.ca	37	9	127231774	127231774	+	Missense_Mutation	SNP	C	C	G	rs1570580	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001161808	exon16	c.C2506G	p.R836G	CGTGCCCGCATGT	.	212	8	178	0	C|0.409;G|0.591	0	0	0	0	0
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30873289	30873289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TAB3-131	NM_152787	exon6	c.A493G	p.T165A	TTCCTGTTTGCAT	.	226	101	236	0	.	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31792220	31792220	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	DMD-265	NM_004006	exon51	c.T7399C	p.L2467L	CCTCCAACATCAA	.	135	13	96	0	.	0	0	0	0	0
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49099775	49099775	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC22-130	NM_014008	exon6	c.C561T	p.P187P	GAGTCCCCTGCTG	.	157	75	144	0	.	20	12	8	0	0
MTMR8	55613	bcgsc.ca	37	X	63488902	63488902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MTMR8-195	NM_017677	exon14	c.C1630A	p.P544T	CTGGTGGCTCATC	.	116	5	62	1	.	0	0	0	0	0
TRMT2B	79979	broad.mit.edu	37	X	100297093	100297093	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TRMT2B-131	NM_001167972	exon2	c.A186G	p.K62K	TTGTCCTTTCTGA	.	106	6	80	1	.	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	55	7	64	0	.	1	1	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KRTAP4-3-22	NM_033187	exon1	c.196_197insCTGACCACCTGCTGC	p.R66delinsLTTCCR	TGGTCCTGCAGCA	.	163	23	146	0	.	0	0	0	0	0
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TEKT4-155	NM_144705	exon3	c.689_690insG	p.P230fs	CTCATCCGTACTC	.	126	10	183	0	.	0	0	0	0	0
SOAT2	8435	hgsc.bcm.edu	37	12	53509339	53509340	+	Silent	DNP	GC	GC	TT	rs34924760		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SOAT2-91	NM_003578	exon6	c.C610T	p.A202A	GCGCTGCTAGCCG	.	17	7	0	0	C|0.787;T|0.213	0	0	0	0	0