Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CCDC27	148870	hgsc.bcm.edu	37	1	3683112	3683112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CCDC27-91	NM_152492	exon9	c.G1466T	p.R489L	ACCTCCGAGAAGA	.	60	4	87	0	.	0	0	0	0	0
HNRNPCL1	343069	hgsc.bcm.edu;bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	119	9	77	1	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	4	0	0	G|0.061;T|0.939	0	0	0	0	0
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	rs140339373		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	147	49	98	0	C|0.999;T|0.000	4	1	3	0	0
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36767183	36767183	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	THRAP3-663	NM_005119	exon11	c.C2532T	p.G844G	CTGGGGCAGAGGC	.	71	23	120	0	.	22	13	9	0	0
C1orf141	400757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67591497	67591497	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C1orf141-91	NM_001276352	exon4	c.C171G	p.S57S	AGACGCGGATGTA	.	83	19	74	0	.	0	0	0	0	0
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91979529	91979529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CDC7-1125	NM_003503	exon8	c.C847A	p.Q283K	TCTGTCCAGCGCT	.	67	30	56	0	.	1	1	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	4	4	0	0	G|0.500;A|0.500	2	2	0	0	0
NBPF9	400818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144821919	144821919	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001037675	exon13	c.1636-2A>G	.	CTCATCAGGAATC	.	135	42	158	0	.	0	0	0	0	0
NBPF10	100132406	hgsc.bcm.edu	37	1	145299738	145299738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001039703	exon6	c.C787T	p.P263S	CCTGGCCCCACCT	.	78	4	68	0	.	0	0	0	0	0
NBPF14	25832	bcgsc.ca	37	1	148010972	148010972	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NBPF14-91	NM_015383	exon14	c.T1650C	p.C550C	TTCAAGACAACCT	.	1538	97	1081	61	.	6	6	0	0	0
SPRR3	6707	broad.mit.edu	37	1	152975659	152975682	+	In_Frame_Del	DEL	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	-	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SPRR3-45	NM_001097589	exon2	c.163_186del	p.55_62del	ATTCCAGAGCCAG	.	203	70	139	0	.	0	0	0	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920822	155920822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARHGEF2-228	NM_001162383	exon20	c.G2501T	p.S834I	TCCAGGCTGCCAG	.	88	9	19	0	.	1	1	0	0	0
APOA2	336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161192812	161192812	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	APOA2-91	NM_001643	exon3	c.G81A	p.E27E	ACATGGCTCCTTT	.	145	48	100	0	.	0	0	0	0	0
IER5	51278	hgsc.bcm.edu	37	1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	rs3747955		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	8	6	1	0	G|0.568;A|0.432	1	0	1	0	0
RGSL1	353299	broad.mit.edu	37	1	182496829	182496829	+	Missense_Mutation	SNP	A	A	G	rs7535533	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RGSL1-226	NM_001137669	exon11	c.A2047G	p.I683V	ATCAGTATAGAGA	.	113	4	93	0	A|0.662;G|0.338	0	0	0	0	0
HSD11B1	3290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209905838	209905838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HSD11B1-153	NM_005525	exon5	c.G575T	p.G192V	TGGATGGGTTCTT	.	212	75	174	0	.	10	5	5	0	0
DNAH14	127602	broad.mit.edu	37	1	225528183	225528183	+	Missense_Mutation	SNP	C	C	A	rs3856145	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DNAH14-23	NM_001373	exon67	c.C10179A	p.D3393E	AATAGACAACCCC	.	170	6	197	0	C|0.498;A|0.500	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	233122169	233122169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCNXL2-91	NM_014801	exon33	c.C5909T	p.S1970F	GAGGTGGACGTCT	.	128	8	68	0	.	0	0	0	0	0
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235345012	235345012	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARID4B-228	NM_016374	exon20	c.T3222G	p.V1074V	CCCAGCAACACTA	.	88	24	104	0	.	1	1	0	0	0
OR2M5	127059	bcgsc.ca	37	1	248309356	248309356	+	Missense_Mutation	SNP	A	A	G	rs73141283	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR2M5-71	NM_001004690	exon1	c.A907G	p.K303E	CTCAGGAAAGTGT	.	195	7	151	0	A|0.942;G|0.058	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	13	4	2	0	G|0.901;A|0.099	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73466729	73466729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CDH23-563	NM_022124	exon25	c.G3029A	p.R1010H	TGCCACGCGAGTT	.	600	136	325	0	.	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu	37	10	77159791	77159791	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF503-91	NM_032772	exon2	c.C657A	p.C219X	TGGCTGGCAGGTG	.	61	4	7	0	.	3	3	0	0	0
NEURL	9148	hgsc.bcm.edu	37	10	105344756	105344756	+	Silent	SNP	T	T	C	rs2236209	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEURL-226	NM_004210	exon4	c.T1113C	p.P371P	CCTGCCTTTCAGC	.	3	3	0	0	T|0.455;C|0.545	0	0	0	0	0
PTPRE	5791	broad.mit.edu;bcgsc.ca	37	10	129871714	129871714	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PTPRE-227	NM_006504	exon17	c.G1578A	p.T526T	GCTGACGGAGGTG	.	275	11	249	0	.	5	5	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	6	6	1	1	C|0.431;G|0.569	16	0	16	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	9	5	6	1	T|0.607;C|0.393	6	6	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093014	1093014	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MUC2-90	NM_002457	exon30	c.C4833G	p.T1611T	CACCACCACCACT	.	148	11	106	2	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MUC2-90	NM_002457	exon30	c.C5117T	p.T1706M	CCACTACGGTGAC	.	139	16	117	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MUC2-90	NM_002457	exon30	c.G5163T	p.P1721P	AACCCCGACACCC	.	153	11	141	2	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	159	13	55	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	36	15	16	2	C|1.000;|0.000	0	0	0	0	0
CHRNA10	57053	hgsc.bcm.edu	37	11	3688801	3688801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CHRNA10-91	NM_020402	exon4	c.C556T	p.P186S	CGCGCGGCCGCAC	.	11	5	0	0	.	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	rs1317826	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DGKZ-676	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	2	2	0	0	A|0.608;G|0.392	0	0	0	0	0
FOLH1	2346	bcgsc.ca	37	11	49197416	49197416	+	Silent	SNP	A	A	G	rs144950409	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOLH1-579	NM_004476	exon8	c.T1014C	p.S338S	CTGTGTAGAAAAG	.	54	5	63	0	A|0.914;G|0.086	0	0	0	0	0
PATL1	219988	hgsc.bcm.edu;bcgsc.ca	37	11	59406653	59406653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PATL1-1	NM_152716	exon18	c.T2159C	p.M720T	GTTGCCATGAACA	.	67	4	68	0	.	7	7	0	0	0
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65479768	65479768	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KAT5-90	NM_182710	exon1	c.G30A	p.G10G	GCCCGGGGCGGGG	.	82	32	28	0	.	2	1	1	0	0
CHRDL2	25884	bcgsc.ca	37	11	74413872	74413872	+	Silent	SNP	A	A	G	rs34528207	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CHRDL2-90	NM_015424	exon9	c.T1087C	p.L363L	CCACCAAGTCCGA	.	123	6	83	0	A|0.791;G|0.209	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99942557	99942557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CNTN5-366	NM_001243270	exon11	c.A1420C	p.K474Q	GAGCTGAAGATTC	.	74	20	75	0	.	0	0	0	0	0
TULP3	7289	bcgsc.ca	37	12	3046802	3046802	+	Silent	SNP	A	A	G	rs33973716	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TULP3-226	NM_003324	exon9	c.A930G	p.T310T	GGAAACAAACGTA	.	257	8	219	1	A|0.796;G|0.204	0	0	0	0	0
IAPP	3375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21526316	21526316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IAPP-90	NM_000415	exon2	c.A31C	p.I11L	TTTCTCATTGTGC	.	77	10	56	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	277	13	252	9	G|0.998;A|0.002	367	257	110	0	0
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52159524	52159524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SCN8A-29	NM_014191	exon16	c.G2614T	p.V872L	AATTCAGTGGGTG	.	91	18	60	0	.	0	0	0	0	0
PDE1B	5153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54967209	54967209	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PDE1B-92	NM_000924	exon9	c.T907C	p.L303L	TTCCGATTGATGC	.	328	65	191	0	.	3	3	0	0	0
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56075903	56075903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	METTL7B-514	NM_152637	exon1	c.T365A	p.F122Y	AGCGGTTTGTGGT	.	108	12	59	0	.	1	1	0	0	0
OTOGL	283310	hgsc.bcm.edu;bcgsc.ca	37	12	80648862	80648862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_173591	exon15	c.A1457G	p.D486G	CTTTTGATGGTCG	.	71	4	44	0	.	0	0	0	0	0
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	90018032	90018032	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP2B1-516	NM_001001323	exon8	c.T1272A	p.V424V	AACTGTAACTCCA	.	286	68	183	1	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	3	0	0	G|0.588;C|0.412	0	0	0	0	0
PITPNM2	57605	hgsc.bcm.edu	37	12	123470761	123470761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PITPNM2-228	NM_020845	exon25	c.G3863A	p.R1288H	CGGGAGCGCAGAA	.	45	26	3	1	.	0	0	0	0	0
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123741386	123741386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C12orf65-90	NM_001194995	exon3	c.G309C	p.Q103H	TGATCAGAACAGA	.	98	10	104	0	.	32	28	3	1	0
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133249853	133249853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POLE-233	NM_006231	exon14	c.C1370G	p.T457R	GAATACGTGGCCA	.	299	56	176	1	.	0	0	0	0	0
ENOX1	55068	ucsc.edu	37	13	43935562	43935562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ENOX1-92	NM_017993	exon6	c.C235A	p.P79T	GGCTTGGATCAAA	.	45	4	25	0	.	0	0	0	0	0
TMTC4	84899	broad.mit.edu	37	13	101316489	101316489	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TMTC4-155	NM_032813	exon4	c.C321T	p.T107T	CAGGACGGTGAGA	.	72	3	74	0	.	1	1	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	4	4	0	0	C|0.372;T|0.628	2	0	2	0	0
PROZ	8858	broad.mit.edu	37	13	113814406	113814406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PROZ-90	NM_001256134	exon3	c.T215G	p.F72C	AACTCTTCGAGGG	.	12	2	36	0	.	0	0	0	0	0
OR4K5	79317	hgsc.bcm.edu	37	14	20389714	20389714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR4K5-70	NM_001005483	exon1	c.G949T	p.V317L	TCACTAGTAGTGA	.	61	4	78	0	.	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	2	2	0	0	C|0.569;G|0.431	0	0	0	0	0
RDH12	145226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68191943	68191943	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RDH12-91	NM_152443	exon5	c.C315T	p.I105I	ATCTATCCGAGCC	.	166	41	144	2	.	0	0	0	0	0
RDH12	145226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68191958	68191958	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RDH12-91	NM_152443	exon5	c.G330A	p.E110E	TGCTGAGGGCTTT	.	170	40	145	1	.	0	0	0	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493809	77493809	+	Silent	SNP	C	C	T	rs61991638	byfrequency;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IRF2BPL-90	NM_024496	exon1	c.G327A	p.Q109Q	CTGCTGCTGCTGT	.	25	5	5	0	C|0.978;T|0.022	5	5	0	0	0
C14orf159	80017	broad.mit.edu	37	14	91633636	91633636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C14orf159-92	NM_001102366	exon6	c.G171T	p.Q57H	CTGCCAGGTCAAC	.	117	4	72	0	.	23	23	0	0	0
TRMT61A	115708	broad.mit.edu	37	14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRMT61A-90	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC	.	100	5	29	0	.	1	1	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413351	105413351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	AHNAK2-47	NM_138420	exon7	c.T8437C	p.F2813L	TTTTGAACTTGCT	.	394	92	254	0	.	0	0	0	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346191	29346191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	APBA2-90	NM_005503	exon3	c.A104G	p.E35G	ACATGGAGCTGCC	.	299	61	251	0	.	0	0	0	0	0
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33358778	33358778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FMN1-23	NM_001103184	exon1	c.G1308C	p.E436D	TAGCGACTCCTTC	.	117	32	95	0	.	0	0	0	0	0
PHGR1	644844	hgsc.bcm.edu	37	15	40648339	40648339	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001145643	exon3	c.C84T	p.G28G	CCATGGCCCAGGG	.	25	3	10	0	.	0	0	0	0	0
PHGR1	644844	hgsc.bcm.edu	37	15	40648372	40648372	+	Silent	SNP	T	T	C	rs12900982	byfrequency;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001145643	exon3	c.T117C	p.G39G	CCATGGTCCAGGG	.	11	2	2	1	T|0.839;C|0.161	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	5	5	0	0	G|0.479;T|0.521	0	0	0	0	0
ACAN	176	hgsc.bcm.edu	37	15	89400097	89400097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACAN-25	NM_001135	exon12	c.T4281G	p.D1427E	AGTAGATGAGATC	.	38	3	41	0	.	0	0	0	0	0
ACAN	176	hgsc.bcm.edu	37	15	89400100	89400100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACAN-25	NM_001135	exon12	c.G4284C	p.E1428D	AGATGAGATCAGT	.	38	3	40	0	.	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	5	5	0	0	A|0.263;G|0.737	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2140477	2140477	+	Silent	SNP	G	G	A	rs199674888		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1-91	NM_001009944	exon45	c.C12253T	p.L4085L	ACAGCAGGGGTGA	.	109	4	95	0	G|0.999;A|0.000	18	18	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2167874	2167874	+	Silent	SNP	G	G	A	rs35842		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1-91	NM_000296	exon5	c.C1119T	p.L373L	GAGGTCGAGGCTC	.	14	6	7	2	A|1.000;|0.000	4	4	0	0	0
BRICD5	283870	bcgsc.ca	37	16	2260567	2260567	+	Missense_Mutation	SNP	C	C	T	rs26857	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_182563	exon2	c.G136A	p.V46I	CCACAACCCCCAC	.	225	7	177	1	C|0.523;T|0.477	2	2	0	0	0
BRICD5	283870	bcgsc.ca	37	16	2260612	2260612	+	Missense_Mutation	SNP	T	T	C	rs26856	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_182563	exon2	c.A91G	p.S31G	GCAGGCTCACGGC	.	103	5	92	1	T|0.324;C|0.676	13	13	0	0	0
C16orf90	646174	broad.mit.edu	37	16	3544636	3544636	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001080524	exon2	c.T288G	p.P96P	GCCCTCAGGCTGT	.	78	3	51	1	.	0	0	0	0	0
TRAP1	10131	broad.mit.edu	37	16	3722703	3722703	+	Missense_Mutation	SNP	C	C	T	rs148180859	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRAP1-226	NM_016292	exon10	c.G1163A	p.R388Q	GTACCTCGGATGA	.	142	5	82	1	C|1.000;T|0.000	0	0	0	0	0
CLEC19A	728276	broad.mit.edu;bcgsc.ca	37	16	19310092	19310092	+	Silent	SNP	T	T	C	rs1548450	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001256720	exon2	c.T186C	p.A62A	CTGGGCTGAGGCC	.	102	5	73	0	T|0.565;C|0.435	0	0	0	0	0
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	21060895	21060895	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DNAH3-167	NM_017539	exon31	c.4456delA	p.I1486fs	CCTCGATCCTGTT	.	96	15	85	0	.	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	8	8	0	0	C|0.218;G|0.782	0	0	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MTSS1L-68	NM_138383	exon15	c.G1623T	p.G541G	GGGCAGCCCAGCA	.	66	10	40	1	.	7	7	0	0	0
PKD1L2	114780	bcgsc.ca	37	16	81199553	81199553	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1L2-92	.	.	.	.	GCAGCCGCAGCAC	.	50	4	49	0	.	0	0	0	0	0
C16orf3	750	ucsc.edu	37	16	90095597	90095597	+	Missense_Mutation	SNP	T	T	C	rs61118444	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52V	AGGCTATGGGGCA	.	88	12	54	1	T|0.361;C|0.639	0	0	0	0	0
MINK1	50488	hgsc.bcm.edu	37	17	4793052	4793052	+	Silent	SNP	C	C	T	rs2277681		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MINK1-943	NM_170663	exon13	c.C1341T	p.R447R	GGAGCGCGAGCAG	.	34	31	1	1	C|0.925;T|0.075	1	0	1	0	0
C17orf59	54785	ucsc.edu	37	17	8092694	8092694	+	Silent	SNP	T	T	G	rs8531	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C17orf59-90	NM_017622	exon1	c.A765C	p.P255P	GTCGATTGGGGGA	.	46	18	11	0	T|0.356;G|0.644	8	6	2	0	0
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27022538	27022538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SUPT6H-93	NM_003170	exon29	c.G3943C	p.D1315H	GAGGAGGACATGA	.	194	73	237	0	.	20	10	10	0	0
MYO19	80179	ucsc.edu;bcgsc.ca	37	17	34854393	34854393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MYO19-23	NM_001163735	exon26	c.C2474A	p.A825D	AGGCAGGCCATTC	.	35	4	52	0	.	1	1	0	0	0
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39780504	39780504	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KRT17-92	NM_000422	exon1	c.C258A	p.A86A	CATGGTGGCCTTC	.	371	19	385	1	.	0	0	0	0	0
JUP	3728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39913762	39913762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	JUP-479	NM_021991	exon12	c.C1951T	p.R651C	AGATGCGGAACAG	.	346	30	281	0	.	8	8	0	0	0
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42255661	42255661	+	Missense_Mutation	SNP	G	G	C	rs199556388	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ASB16-227	NM_080863	exon5	c.G1265C	p.R422P	GCGCTCGGTTGGG	.	79	25	30	0	G|0.999;A|0.001	0	0	0	0	0
FOXJ1	2302	hgsc.bcm.edu	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	5	4	1	0	C|0.925;T|0.075	0	0	0	0	0
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79478286	79478286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACTG1-91	NM_001614	exon4	c.G730C	p.D244H	GGCCATCGGGCAG	.	366	85	289	0	.	877	659	218	0	0
TXNDC2	84203	hgsc.bcm.edu	37	18	9886894	9886894	+	Missense_Mutation	SNP	A	A	G	rs146821851		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TXNDC2-92	NM_001098529	exon2	c.A418G	p.K140E	TCAGAAAAAGCCA	.	94	6	151	2	A|1.000;G|0.000	0	0	0	0	0
GRP	2922	hgsc.bcm.edu	37	18	56887537	56887537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GRP-90	NM_001012512	exon1	c.G40T	p.V14F	GCGCTGGTCCTCT	.	8	6	2	1	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	3	3	1	1	T|0.767;C|0.233	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	4	4	0	0	C|0.390;A|0.610	0	0	0	0	0
TPGS1	91978	hgsc.bcm.edu	37	19	519018	519018	+	Silent	SNP	C	C	T	rs145134429		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_033513	exon2	c.C468T	p.A156A	CCAAGCCCCCGAG	.	10	9	0	0	C|0.994;T|0.006	21	4	17	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1049413	1049413	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ABCA7-98	NM_019112	exon18	c.C2529T	p.N843N	CCACAACGGGGCC	.	92	48	69	0	.	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	7	7	0	0	G|0.749;A|0.251	1	1	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	7	7	0	0	T|0.403;C|0.597	2	2	0	0	0
SEMA6B	10501	broad.mit.edu	37	19	4550277	4550277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEMA6B-91	NM_032108	exon12	c.T1129G	p.C377G	CGCAGCACCCGGG	.	171	22	113	11	.	0	0	0	0	0
FUT3	2525	bcgsc.ca	37	19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	rs28381969	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FUT3-90	NM_001097640	exon3	c.C974T	p.T325M	CGCAGCGTCTCCC	.	1455	392	862	218	G|0.992;A|0.008	0	0	0	0	0
OR7A5	26659	hgsc.bcm.edu	37	19	14938159	14938159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.A895G	p.R299G	GAGCCCTCTTTAT	.	61	5	56	1	.	0	0	0	0	0
OR7A5	26659	hgsc.bcm.edu	37	19	14938184	14938184	+	Silent	SNP	A	A	G	rs200531878		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.T870C	p.Y290Y	CAGACTATAGATA	.	87	6	62	1	A|0.999;G|0.001	0	0	0	0	0
OR7A5	26659	hgsc.bcm.edu	37	19	14938190	14938190	+	Silent	SNP	A	A	G	rs2240561	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.T864C	p.F288F	ATAGATAAAGGGG	.	97	6	70	1	A|0.999;G|0.001	0	0	0	0	0
NOTCH3	4854	bcgsc.ca	37	19	15303225	15303225	+	Silent	SNP	G	G	A	rs3815188	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NOTCH3-855	NM_000435	exon3	c.C303T	p.T101T	TCGGGCGGTGCCA	.	283	8	170	0	G|0.773;A|0.227	1	1	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	5	4	0	0	C|0.617;T|0.383	18	3	15	0	0
ZNF493	284443	hgsc.bcm.edu	37	19	21606692	21606692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF493-516	NM_001076678	exon4	c.G1231T	p.G411C	GAATGTGGCAAAG	.	46	4	40	0	.	0	0	0	0	0
ZNF493	284443	hgsc.bcm.edu	37	19	21606712	21606712	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF493-516	NM_001076678	exon4	c.T1251C	p.S417S	GGAGTCTTCACAC	.	41	3	28	0	.	0	0	0	0	0
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22362756	22362756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF676-90	NM_001001411	exon3	c.C1763T	p.P588L	TTTTAGGGATTCT	.	75	7	51	0	.	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183316	33183316	+	Silent	SNP	A	A	G	rs8109823		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NUDT19-22	NM_001105570	exon1	c.A450G	p.P150P	AGGCCCAGCACCC	.	6	2	0	0	A|0.805;G|0.195	0	0	0	0	0
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38851407	38851407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CATSPERG-92	NM_021185	exon16	c.G1804A	p.V602I	CAGCTGGTCAAGA	.	430	42	195	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	2	2	1	1	G|0.349;A|0.651	0	0	0	0	0
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42486218	42486218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP1A3-92	NM_001256214	exon9	c.A1073C	p.N358T	AGGCAGTTCTTCC	.	546	29	305	0	.	6	5	1	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	8	4	1	0	C|0.804;T|0.196	7	3	4	0	0
ZC3H4	23211	hgsc.bcm.edu;ucsc.edu	37	19	47575243	47575243	+	Silent	SNP	T	T	A	rs392366		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.A1938T	p.A646A	CATGTCTGCGTGC	.	91	33	68	0	A|0.000;G|0.000;T|1.000	3	3	0	0	0
ZC3H4	23211	hgsc.bcm.edu;ucsc.edu	37	19	47575245	47575245	+	Missense_Mutation	SNP	C	C	G	rs381976		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.G1936C	p.A646P	TGTCTGCGTGCAT	.	92	31	71	0	C|1.000;|0.000	2	2	0	0	0
ZC3H4	23211	hgsc.bcm.edu	37	19	47575255	47575255	+	Silent	SNP	A	A	C	rs73943611		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.T1926G	p.P642P	CATGTCAGGGTGC	.	95	21	74	0	A|0.996;C|0.000;T|0.003	1	1	0	0	0
ZC3H4	23211	hgsc.bcm.edu	37	19	47575267	47575267	+	Silent	SNP	C	C	G	rs200656728	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.G1914C	p.P638P	CATGTCCGGGTGC	.	100	16	75	0	C|1.000;A|0.000	1	1	0	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	7	7	0	0	T|0.245;C|0.755	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	1	1	G|0.738;A|0.262	1	0	1	0	0
ADM5	199800	broad.mit.edu	37	19	50193643	50193643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001101340	exon2	c.G355T	p.G119C	CTCCTCGGCTTCA	.	378	12	151	0	.	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	7	5	0	0	T|0.228;C|0.772	0	0	0	0	0
KLK10	5655	ucsc.edu	37	19	51520487	51520487	+	Missense_Mutation	SNP	A	A	C	rs3745535	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KLK10-650	NM_145888	exon3	c.T148G	p.S50A	ACGGGGAGCCATA	.	140	20	15	0	A|0.266;C|0.734	0	0	0	0	0
KLK12	43849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51532678	51532678	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KLK12-227	NM_019598	exon6	c.C627A	p.V209V	TTGAAGGACTCCC	.	83	39	71	0	.	0	0	0	0	0
ZNF765	91661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53912284	53912284	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF765-69	NM_001040185	exon4	c.A1476G	p.K492K	ACAGAAACCTTAC	.	166	33	126	0	.	0	0	0	0	0
ZFP36L2	678	hgsc.bcm.edu	37	2	43452793	43452793	+	Silent	SNP	C	C	G	rs77160973	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFP36L2-226	NM_006887	exon2	c.G150C	p.P50P	GAATCCCGGCGCG	.	8	6	0	0	C|0.971;G|0.029	2	0	2	0	0
NRXN1	9378	hgsc.bcm.edu	37	2	51255344	51255344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NRXN1-92	NM_004801	exon2	c.G68T	p.C23F	GCCCAGCAGCCCA	.	33	16	3	0	.	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125660522	125660522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CNTNAP5-524	NM_130773	exon22	c.C3497G	p.S1166C	GCATGTCTTCCGT	.	164	77	161	0	.	0	0	0	0	0
HS6ST1	9394	hgsc.bcm.edu	37	2	129076016	129076016	+	Missense_Mutation	SNP	C	C	G	rs201154532		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HS6ST1-91	NM_004807	exon1	c.G122C	p.S41T	CCCAGGCTCAGTC	.	5	4	1	1	.	0	0	0	0	0
CTLA4	1493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204735648	204735648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CTLA4-90	NM_005214	exon2	c.A449G	p.Y150C	AGATTTATGTAAT	.	181	11	105	0	.	0	0	0	0	0
ALPP	250	hgsc.bcm.edu	37	2	233246432	233246432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ALPP-91	NM_001632	exon11	c.G1535C	p.R512P	CGGGGCGGTCCGT	.	8	2	5	1	.	0	0	0	0	0
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1456854	1456854	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SIRPB2-226	NM_001122962	exon5	c.A987T	p.A329A	GGCTCCTGCTGGG	.	215	61	154	0	.	0	0	0	0	0
SLC4A11	83959	bcgsc.ca	37	20	3211402	3211402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLC4A11-91	NM_001174090	exon11	c.G1387A	p.A463T	GGGGCGCGGTGGT	.	155	30	102	2	.	0	0	0	0	0
FAM182B	728882	ucsc.edu	37	20	25755562	25755562	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	.	.	.	.	GGGACCACTCCGG	.	101	16	27	0	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	4	2	1	C|0.769;T|0.231	0	0	0	0	0
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	48494522	48494523	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLC9A8-91	NM_001260491	exon12	c.1128_1129del	p.376_377del	AGAAACATGTGTG	.	70	13	82	0	.	0	0	0	0	0
POTEH	23784	hgsc.bcm.edu	37	22	16287622	16287622	+	Silent	SNP	A	A	G	rs200785274	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POTEH-1	NM_001136213	exon1	c.T264C	p.D88D	AGCAGAATCGTCG	.	42	14	24	2	A|0.957;G|0.044	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18293575	18293575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MICAL3-68	NM_015241	exon28	c.G5450A	p.R1817K	TAGGTTCTTGGCT	.	264	76	164	0	.	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18304242	18304242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MICAL3-68	NM_015241	exon25	c.C3482T	p.P1161L	TCCTGGGGAGACC	.	59	14	57	0	.	2	0	2	0	0
PI4KA	5297	hgsc.bcm.edu;bcgsc.ca	37	22	21150496	21150496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PI4KA-454	NM_058004	exon18	c.C2215G	p.Q739E	CCAGCTGCACAAA	.	187	14	212	0	.	1	1	0	0	0
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25115501	25115501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PIWIL3-93	NM_001008496	exon21	c.G2587A	p.V863M	GCCCCACGAGGTA	.	272	90	223	0	.	0	0	0	0	0
NEFH	4744	ucsc.edu	37	22	29885564	29885564	+	Silent	SNP	A	A	G	rs202065964		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A1935G	p.E645E	GGAGGAAGCAAAG	.	54	13	142	0	.	3	3	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	96	13	247	0	A|0.500;T|0.500	5	5	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885670	29885693	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	AAGTCCCCAGTGAAGGCAGAAGCA	-	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	AAGTCCCCAGTGAAGGCAGAAGCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.2041_2064del	p.681_688del	AAGGCCAAGTCCC	.	252	21	463	0	.	0	0	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.T2093A	p.V698E	CCCCAGTGAAGGA	.	205	16	532	1	.	35	35	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885732	29885732	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A2103G	p.E701E	GGAAGAAGCAAAG	.	197	12	531	1	.	10	10	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885735	29885735	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A2106C	p.A702A	AGAAGCAAAGTCC	.	194	15	528	2	.	10	10	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	7	0	0	A|0.354;G|0.646	0	0	0	0	0
ODF3B	440836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50969456	50969456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ODF3B-68	NM_001014440	exon5	c.G450C	p.L150F	CGGACCCAAGAGC	.	169	65	127	0	.	4	3	1	0	0
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10491213	10491213	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP2B2-95	NM_001683	exon2	c.C15G	p.T5T	GCTGTTGGTCATG	.	146	45	129	0	.	0	0	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37388682	37388682	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GOLGA4-93	NM_001172713	exon21	c.6518-2A>T	.	TTTGGCAGGTGGC	.	65	13	61	0	.	0	0	0	0	0
VILL	50853	broad.mit.edu	37	3	38040537	38040537	+	Silent	SNP	G	G	A	rs199499422		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	VILL-90	NM_015873	exon9	c.G1077A	p.G359G	CGGCGGGAGGGGT	.	36	14	28	0	G|0.995;A|0.005	0	0	0	0	0
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46307366	46307366	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CCR3-660	NM_178328	exon3	c.G780C	p.R260R	CATCCGGCTCATT	.	64	14	63	0	.	0	0	0	0	0
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58128391	58128391	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FLNB-593	NM_001164317	exon32	c.C5289G	p.A1763A	AGAGGCCTATGTC	.	180	37	105	1	.	5	3	2	0	0
PROK2	60675	hgsc.bcm.edu	37	3	71834120	71834120	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PROK2-90	NM_001126128	exon1	c.C84G	p.A28A	GATCACGGCGGCG	.	9	4	2	1	.	0	0	0	0	0
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140277631	140277631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CLSTN2-157	NM_022131	exon12	c.T1973C	p.L658P	TGACCCTCTTCCC	.	112	30	89	1	.	1	1	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	10	4	4	2	G|0.797;A|0.203	0	0	0	0	0
SEC62	7095	ucsc.edu	37	3	169700673	169700673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEC62-69	NM_003262	exon4	c.G430A	p.D144N	AAAAAAGATGGTG	.	20	2	31	0	.	36	27	9	0	0
FAM157A	728262	hgsc.bcm.edu	37	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001145248	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	435	38	334	0	.	0	0	0	0	0
FAM157A	728262	hgsc.bcm.edu	37	3	197880166	197880166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001145248	exon2	c.A245T	p.Q82L	AGCAGCAGCAGCA	.	454	32	353	0	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	24	9	6	2	C|0.960;G|0.040	7	4	3	0	0
FAM193A	8603	broad.mit.edu	37	4	2641522	2641522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FAM193A-93	NM_003704	exon4	c.G226T	p.E76X	CTGTTTGAAAATC	.	93	4	109	0	.	0	0	0	0	0
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20270474	20270474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLIT2-521	NM_004787	exon4	c.T365C	p.L122P	AGTTGCTGTTTCT	.	72	25	72	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	5	5	0	0	G|0.025;C|0.975	0	0	0	0	0
CWH43	80157	broad.mit.edu	37	4	48993967	48993967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CWH43-93	NM_025087	exon4	c.G371T	p.W124L	GAATTTGGGGATT	.	99	5	142	0	.	0	0	0	0	0
NOA1	84273	hgsc.bcm.edu	37	4	57843114	57843114	+	Missense_Mutation	SNP	C	C	G	rs200929636	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_032313	exon1	c.G638C	p.G213A	GAGGGGCCGGGCC	.	8	5	0	0	C|0.989;G|0.011	3	1	2	0	0
DSPP	1834	bcgsc.ca	37	4	88537126	88537126	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	806	35	683	9	.	0	0	0	0	0
PIK3R1	5295	hgsc.bcm.edu	37	5	67522734	67522734	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PIK3R1-4332	NM_181523	exon2	c.T231C	p.I77I	ATATATTGGAAGG	.	52	3	98	0	.	0	0	0	0	0
GFM2	84340	ucsc.edu;bcgsc.ca	37	5	74037386	74037386	+	Missense_Mutation	SNP	T	T	A	rs16872235	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GFM2-90	NM_032380	exon11	c.A898T	p.S300C	TCTCACTAAATTC	.	47	8	62	0	T|0.878;A|0.122	7	7	0	0	0
C5orf56	441108	bcgsc.ca	37	5	131805735	131805735	+	RNA	SNP	C	C	T	rs2706379	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C5orf56-90	.	.	.	.	TAGCCCCGAACAG	.	276	11	283	4	C|0.735;T|0.265	1	1	0	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB2-96	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	177	5	42	0	.	5	5	0	0	0
PCDHB6	56130	hgsc.bcm.edu	37	5	140531592	140531592	+	Missense_Mutation	SNP	C	C	T	rs55834559	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB6-91	NM_018939	exon1	c.C1754T	p.T585I	TGGTGACCAAGGT	.	36	9	8	1	C|0.966;T|0.034	47	45	2	0	0
PCDHB16	57717	hgsc.bcm.edu	37	5	140564048	140564048	+	Missense_Mutation	SNP	G	G	C	rs76350555		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB16-92	NM_020957	exon1	c.G1914C	p.Q638H	CAAGCAGAGGCTG	.	49	14	5	2	.	8	7	1	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	13	5	3	0	.	36	29	7	0	0
GLRA1	2741	broad.mit.edu	37	5	151202503	151202503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GLRA1-91	NM_001146040	exon9	c.C1105T	p.R369C	TAAAGCGGCCTTC	.	56	4	48	0	.	0	0	0	0	0
ZFP2	80108	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	178359644	178359644	+	Missense_Mutation	SNP	G	G	A	rs189472573		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFP2-93	NM_030613	exon5	c.G1330A	p.G444R	GAATGCGGAAAAG	.	64	6	63	0	G|0.999;A|0.001	2	2	0	0	0
FOXC1	2296	hgsc.bcm.edu	37	6	1611345	1611345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOXC1-227	NM_001453	exon1	c.G665T	p.R222L	CCGTGCGCATCCA	.	3	3	0	0	.	0	0	0	0	0
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25967015	25967015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRIM38-226	NM_006355	exon3	c.C265G	p.Q89E	ACGGATCAAGAAA	.	290	56	172	0	.	1	0	1	0	0
C6orf10	10665	bcgsc.ca	37	6	32307382	32307382	+	Missense_Mutation	SNP	G	G	A	rs1033500	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C6orf10-91	.	.	.	.	CAAGGAGGTTCTT	.	121	5	165	2	G|0.526;T|0.075	0	0	0	0	0
TREML2	79865	hgsc.bcm.edu	37	6	41166119	41166119	+	Missense_Mutation	SNP	T	T	C	rs76984414		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TREML2-91	NM_024807	exon2	c.A104G	p.E35G	AGAGTCTCCCCTT	.	95	4	87	1	.	0	0	0	0	0
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74228419	74228421	+	Frame_Shift_Del	DEL	ACC	ACC	-	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	ACC	ACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	EEF1A1-226	NM_001402	exon5	c.772_772del	p.258_258del	CAACTTACCACCA	.	186	48	173	0	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	4	3	0	0	T|0.089;G|0.911	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	3	3	0	0	T|0.000;G|1.000	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	rs2076190	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	13	10	1	0	G|0.243;A|0.757	2	0	2	0	0
NHSL1	57224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	138753527	138753527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NHSL1-68	NM_020464	exon5	c.C1967T	p.S656F	TAATTGGACCGGT	.	23	13	29	0	.	0	0	0	0	0
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	147022084	147022084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_024694	exon13	c.G1585T	p.V529L	CATTTTGTGCGCT	.	67	10	67	0	.	0	0	0	0	0
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	154533922	154533922	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IPCEF1-90	NM_001130699	exon10	c.T519A	p.A173A	CTGGGAAGCGTGA	.	138	12	103	0	.	0	0	0	0	0
ARID1B	57492	hgsc.bcm.edu	37	6	157099362	157099362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARID1B-154	NM_017519	exon1	c.T299A	p.L100H	ACCACCTCCACCA	.	49	4	15	0	.	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	2	2	1	1	G|0.796;C|0.204	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	87	5	61	2	.	5	5	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TBP-91	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	94	9	57	0	.	3	3	0	0	0
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	EIF3B-68	NM_001037283	exon1	c.C435T	p.N145N	GGAGAACGGCGAC	.	6	4	0	0	C|0.787;T|0.213	7	4	3	0	0
TNRC18	84629	broad.mit.edu	37	7	5352548	5352548	+	Silent	SNP	T	T	G	rs112615228	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TNRC18-46	NM_001080495	exon27	c.A7974C	p.S2658S	GGAGGATGAGGAC	.	85	3	43	0	T|0.500;A|0.500	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	12	3	5	0	.	0	0	0	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	3	2	0	0	G|0.565;A|0.435	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	11	3	0	0	G|0.760;A|0.240	7	4	3	0	0
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134644847	134644847	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CALD1-226	NM_033138	exon12	c.A2184G	p.A728A	TGCAGCAGGCACA	.	224	43	185	0	.	4	4	0	0	0
KIAA1549	57670	bcgsc.ca	37	7	138602432	138602432	+	Missense_Mutation	SNP	G	G	C	rs61734132	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KIAA1549-369	NM_020910	exon2	c.C1940G	p.S647C	GACAGAGACGCAG	.	67	4	92	1	G|0.937;C|0.063	0	0	0	0	0
GBX1	2636	hgsc.bcm.edu	37	7	150864240	150864240	+	Silent	SNP	G	G	C	rs13241978	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GBX1-68	NM_001098834	exon1	c.C396G	p.A132A	TCGGGCGGCAGTG	.	5	5	1	0	G|0.699;C|0.301	0	0	0	0	0
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16032762	16032762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MSR1-91	NM_138715	exon3	c.G151A	p.A51T	GTGCAGCTTTGAA	.	113	31	124	1	.	1	1	0	0	0
PXDNL	137902	hgsc.bcm.edu	37	8	52321843	52321843	+	Missense_Mutation	SNP	G	G	C	rs11992240	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PXDNL-70	NM_144651	exon17	c.C2341G	p.R781G	CCAGCCGGGGCGG	.	7	6	0	0	G|0.840;C|0.160	0	0	0	0	0
FZD6	8323	bcgsc.ca	37	8	104343686	104343686	+	Silent	SNP	G	G	A	rs1053917	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FZD6-658	NM_003506	exon7	c.G2070A	p.P690P	TCACCCGGTTTCA	.	113	6	116	0	G|0.585;A|0.415	2	2	0	0	0
ATAD2	29028	hgsc.bcm.edu	37	8	124382159	124382167	+	In_Frame_Del	DEL	TCATCATCA	TCATCATCA	-	rs112640031	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	TCATCATCA	TCATCATCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATAD2-92	NM_014109	exon7	c.825_833del	p.275_278del	TCATCTTCATCAT	.	82	21	61	0	-|0.250;CAT|0.500;CATCAT|0.250	0	0	0	0	0
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	135622778	135622778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFAT-90	NM_020863	exon4	c.G569T	p.R190I	AGCTGTCTGGCCT	.	157	12	151	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	3	3	0	0	A|0.118;G|0.882	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	12	6	1	0	A|0.536;G|0.464	30	13	17	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	11	6	1	0	A|0.738;G|0.262	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	9	6	1	1	C|0.731;T|0.269	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	6	2	0	0	G|0.246;A|0.754	3	1	2	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	13	7	0	0	G|0.572;C|0.428	0	0	0	0	0
FBP2	8789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97355868	97355868	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FBP2-226	NM_003837	exon1	c.G141A	p.S47S	CACAGCCGAGGAG	.	310	44	156	1	.	0	0	0	0	0
PAEP	5047	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138457640	138457640	+	Missense_Mutation	SNP	G	G	A	rs143616209	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PAEP-68	NM_002571	exon6	c.G536A	p.R179H	CGTGCCGTTTCTA	.	247	41	132	0	G|0.997;A|0.003	0	0	0	0	0
INPP5E	56623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139324136	139324136	+	Silent	SNP	G	G	A	rs201735585		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	INPP5E-227	NM_019892	exon10	c.C1926T	p.S642S	AGAAACGGAGCAG	.	209	41	114	0	G|0.999;A|0.000	14	12	2	0	0
NOXA1	10811	hgsc.bcm.edu	37	9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	rs112864733		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	3	3	2	0	C|0.934;G|0.066	0	0	0	0	0
AKAP17A	8227	hgsc.bcm.edu	37	X	1720322	1720322	+	Silent	SNP	G	G	A	rs146065656	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	AKAP17A-40	NM_005088	exon5	c.G1923A	p.P641P	GAGCCCGGACCAC	.	20	14	4	0	G|0.992;A|0.008	12	3	9	0	0
STS	412	broad.mit.edu;bcgsc.ca	37	X	7252144	7252144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	STS-130	NM_000351	exon9	c.G1374C	p.Q458H	CCCTCAGAACAGT	.	356	10	204	1	.	0	0	0	0	0
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	27765556	27765556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DCAF8L2-42	NM_001136533	exon1	c.C544A	p.L182M	TCTGCCCTGCCCC	.	476	29	320	1	.	0	0	0	0	0
GATA1	2623	broad.mit.edu;bcgsc.ca	37	X	48652250	48652250	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GATA1-1315	NM_002049	exon6	c.C921T	p.R307R	AAACCGCAAGGCA	.	224	7	173	1	.	0	0	0	0	0
DGAT2L6	347516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69424885	69424885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DGAT2L6-131	NM_198512	exon7	c.C943A	p.L315M	AGTGCCCTGCGCA	.	264	38	179	1	.	0	0	0	0	0
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83372103	83372103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RPS6KA6-615	NM_014496	exon11	c.G914T	p.R305M	AACATCCTTAGAA	.	163	52	179	0	.	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu;mdanderson.org	37	X	153032899	153032899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLXNB3-130	NM_001163257	exon4	c.G686A	p.R229H	CCATCCGCCAGCT	.	45	17	9	0	.	0	0	0	0	0
ARHGAP4	393	broad.mit.edu	37	X	153187251	153187251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARHGAP4-227	NM_001666	exon2	c.C79A	p.Q27K	TCAGCTGCCAGCG	.	37	4	12	0	.	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306347	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TPSD1-90	NM_012217	exon1	c.G66C	p.P22R	GAGCCCGGCCTAC	.	123	0	15	0	.	0	0	0	0	0