Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2235335	2235335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SKI-838	NM_003036	exon4	c.C1268T	p.P423L	TCGCACCGCCGGC	.	95	86	83	0	.	8	2	6	0	0
PRDM16	63976	hgsc.bcm.edu	37	1	3329263	3329263	+	Silent	SNP	C	C	T	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDM16-660	NM_022114	exon9	c.C2502T	p.G834G	GCTGGGCGCCGGC	.	31	28	0	0	C|0.969;T|0.031	0	0	0	0	0
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	1	11589895	11589895	+	Missense_Mutation	SNP	C	C	T	rs201439934		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTCHD2-209	NM_020780	exon15	c.C2981T	p.T994M	TGAACACGGGCTG	.	145	7	224	0	C|0.999;T|0.001	0	0	0	0	0
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11728807	11728807	+	Missense_Mutation	SNP	G	G	A	rs146139993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXO6-226	NM_018438	exon2	c.G92A	p.R31H	CCGCCCGCCAGCT	.	164	143	201	2	G|1.000;A|0.000	45	31	14	0	0
MFN2	9927	broad.mit.edu	37	1	12069759	12069759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MFN2-91	NM_014874	exon18	c.T2180C	p.L727P	ACTCACTTCAGAG	.	93	3	133	0	.	45	45	0	0	0
FHAD1	114827	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15701119	15701119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FHAD1-69	NM_052929	exon26	c.G3503A	p.R1168H	AGGCGCGCTCACC	.	152	135	220	2	.	0	0	0	0	0
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15820441	15820441	+	Silent	SNP	G	G	A	rs149161953		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CASP9-1083	NM_001229	exon8	c.C1104T	p.D368D	GATGTCGTCCAGG	.	47	42	49	0	G|0.999;A|0.000	10	1	9	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19479813	19479813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBR4-612	NM_020765	exon46	c.C6814T	p.R2272C	TTTTGCGCTTTCG	.	106	99	179	0	.	2	0	2	0	0
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22446583	22446583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	WNT4-524	NM_030761	exon5	c.G1016A	p.R339Q	CACTGCCGGCACT	.	85	78	79	0	.	0	0	0	0	0
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27121404	27121404	+	Silent	SNP	G	G	A	rs147229452		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIGV-91	NM_001202554	exon3	c.G879A	p.P293P	TGAACCGCCTTGG	.	181	167	213	0	G|1.000;A|0.000	10	0	9	0	1
WASF2	10163	broad.mit.edu;bcgsc.ca	37	1	27736229	27736229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	WASF2-228	NM_006990	exon8	c.C1296T	p.A432A	GCTCACGGCAGGC	.	176	7	337	0	.	39	38	1	0	0
EIF3I	8668	broad.mit.edu	37	1	32694136	32694136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EIF3I-69	NM_003757	exon7	c.C565T	p.R189W	CACTCCCGGCAGA	.	137	4	217	0	.	219	219	0	0	0
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32792571	32792571	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HDAC1-659	NM_004964	exon5	c.G387A	p.T129T	GCAGACGGACATC	.	76	68	138	0	.	84	1	83	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437637	36437637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_024852	exon4	c.G325A	p.V109I	TTAGACGTTACTT	.	124	111	234	0	.	0	0	0	0	0
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40872411	40872411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMAP2-68	NM_022733	exon2	c.C107T	p.P36L	CAGGGCCGCGATG	.	64	62	81	0	.	0	0	0	0	0
CDC20	991	bcgsc.ca	37	1	43826794	43826794	+	Missense_Mutation	SNP	G	G	A	rs1801456	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDC20-227	NM_001255	exon9	c.G1081A	p.V361I	TAGGCCGTAGCAT	.	72	6	93	0	G|0.996;A|0.004	0	0	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057523	44057523	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPRF-232	NM_002840	exon10	c.G1572A	p.S524S	GGAGTCGGACACC	.	138	40	254	0	.	3	2	1	0	0
DNTTIP2	30836	broad.mit.edu;bcgsc.ca	37	1	94342201	94342201	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_014597	exon2	c.G1290A	p.A430A	GTTGGGCGCAGAC	.	264	10	430	0	.	25	24	1	0	0
BCL9	607	bcgsc.ca	37	1	147092112	147092112	+	Silent	SNP	G	G	A	rs61754125	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCL9-707	NM_004326	exon8	c.G2151A	p.K717K	GATGAAGGGAGAT	.	98	6	115	1	G|0.978;A|0.022	12	12	0	0	0
OTUD7B	56957	broad.mit.edu	37	1	149939226	149939226	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OTUD7B-502	NM_020205	exon4	c.A495G	p.E165E	TGCCTGTTCCAAG	.	114	3	188	0	.	0	0	0	0	0
RPTN	126638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152128689	152128689	+	Missense_Mutation	SNP	C	C	T	rs201025925		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPTN-68	NM_001122965	exon3	c.G886A	p.G296S	TCTGACCGTAGTG	.	165	142	206	0	C|0.999;T|0.001	0	0	0	0	0
FLG	2312	broad.mit.edu;bcgsc.ca	37	1	152286155	152286155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLG-106	NM_002016	exon3	c.G1207A	p.G403R	CTTGCCCGCGCCC	.	148	6	186	0	.	0	0	0	0	0
CLK2	1196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155238573	155238573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CLK2-333	NM_003993	exon4	c.G410A	p.R137Q	GCTCTCCGGCTGC	.	51	42	68	1	.	4	0	4	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155348172	155348172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASH1L-234	NM_018489	exon10	c.G6232A	p.V2078I	CATCAACGTAGAC	.	93	7	138	0	.	0	0	0	0	0
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156882744	156882744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PEAR1-71	NM_001080471	exon18	c.C2392T	p.R798C	AGCGGGCGCCTGG	.	96	90	148	0	.	0	0	0	0	0
COPA	1314	broad.mit.edu	37	1	160265920	160265920	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COPA-92	NM_001098398	exon22	c.A2310G	p.T770T	AGCAGCTGTGAGA	.	95	5	133	0	.	38	38	0	0	0
POU2F1	5451	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167343435	167343435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	POU2F1-579	NM_002697	exon6	c.G493A	p.A165T	CACTCCGCCAGCC	.	152	63	195	1	.	0	0	0	0	0
KIFAP3	22920	ucsc.edu;bcgsc.ca	37	1	169951997	169951997	+	Silent	SNP	C	C	T	rs33943686	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIFAP3-91	NM_014970	exon14	c.G1518A	p.G506G	AAGGTCCCCAACA	.	47	5	62	0	C|0.728;T|0.272	0	0	0	0	0
PRRC2C	23215	broad.mit.edu;bcgsc.ca	37	1	171506485	171506485	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_015172	exon15	c.C2371T	p.R791X	ATAGCTCGATCTG	.	126	6	172	0	.	11	10	1	0	0
RC3H1	149041	broad.mit.edu	37	1	173912683	173912683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RC3H1-92	NM_172071	exon17	c.C3032T	p.P1011L	GGTGGCGGTGGTG	.	114	5	141	0	.	0	0	0	0	0
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176833494	176833494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASTN1-319	NM_004319	exon23	c.G3811A	p.D1271N	TGAGGTCCCGGCT	.	74	71	124	1	.	1	0	1	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF648-91	NM_001009992	exon2	c.C1373T	p.A458V	GGCTGCGCGAAGG	.	114	23	66	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185956660	185956660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HMCN1-113	NM_031935	exon20	c.C3032T	p.S1011F	AACCGTCTGTCAT	.	66	55	93	0	.	0	0	0	0	0
CFH	3075	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	196659281	196659281	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CFH-566	NM_001014975	exon9	c.C1248T	p.C416C	TGCCTGCCATCCT	.	432	151	646	2	.	1	1	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197060024	197060024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPM-615	NM_018136	exon23	c.C9592T	p.R3198C	TTTTACGGAGGAG	.	47	15	40	0	.	2	0	2	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856743	210856743	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KCNH1-94	NM_172362	exon11	c.G2850A	p.Q950Q	AGAGAGCTGTTTC	.	87	33	161	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373375	216373375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	USH2A-115	NM_206933	exon17	c.G3405C	p.R1135S	TACACTCCTTGTT	.	110	104	154	0	.	0	0	0	0	0
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223116579	223116579	+	Silent	SNP	G	G	A	rs143316612	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DISP1-68	NM_032890	exon4	c.G414A	p.T138T	GACTACGTGCTGT	.	213	186	290	1	G|0.998;A|0.002	3	0	3	0	0
OBSCN	84033	bcgsc.ca;mdanderson.org	37	1	228503565	228503565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OBSCN-403	NM_001271223	exon61	c.C15901T	p.R5301W	GTGGTGCGGGGGC	.	64	53	45	1	.	2	0	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	30	29	4	0	G|0.841;A|0.159	0	0	0	0	0
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244218382	244218382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_205768	exon2	c.C1306T	p.R436C	CTCAAGCGCCACG	.	184	167	324	0	.	12	3	9	0	0
OR2T2	401992	bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGCG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OR2T2-23	NM_001004136	exon1	c.607_613del	p.203_205del	TATGCCTGCTGCG	.	361	12	613	3	.	0	0	0	0	0
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7608357	7608357	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH5-92	NM_030569	exon13	c.C2163T	p.N721N	CTCTCCGTTCACT	.	82	71	98	0	.	0	0	0	0	0
DHTKD1	55526	ucsc.edu;bcgsc.ca	37	10	12142210	12142210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHTKD1-515	NM_018706	exon9	c.C1705G	p.L569V	ATCAAGCTAGACT	.	38	4	36	0	.	17	17	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21971185	21971185	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLLT10-658	NM_001195626	exon12	c.C1698T	p.N566N	ACACAACGGTAAG	.	38	33	39	0	.	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24832505	24832505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1217-98	NM_019590	exon19	c.G4306A	p.V1436M	CCAGTCGTGTGCC	.	135	125	204	0	.	10	1	9	0	0
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30315257	30315257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1462-72	NM_020848	exon3	c.C3820T	p.L1274L	AGCTCAGGACTCT	.	43	40	53	0	.	2	1	1	0	0
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34400183	34400183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PARD3-92	NM_019619	exon25	c.C3985T	p.R1329W	CTTGCCGGAAGGG	.	64	58	66	0	.	8	0	8	0	0
FZD8	8325	broad.mit.edu	37	10	35929442	35929442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FZD8-612	NM_031866	exon1	c.T916C	p.F306L	ACTTGAAGCGCTC	.	130	5	166	0	.	1	1	0	0	0
BMS1	9790	broad.mit.edu	37	10	43291975	43291975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BMS1-93	NM_014753	exon10	c.G1283A	p.R428H	GAATGCGTCGGAA	.	430	11	600	2	.	8	8	0	0	0
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428896	48428896	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GDF10-650	NM_004962	exon2	c.G990A	p.A330A	TTTCAGCGCCCGG	.	67	64	60	0	.	1	0	1	0	0
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64975209	64975209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JMJD1C-275	NM_032776	exon7	c.T829C	p.Y277H	GTGTATAATGGCT	.	59	53	76	0	.	0	0	0	0	0
MICU1	10367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74235015	74235015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001195518	exon8	c.G776A	p.R259H	CTGTGGCGCATAC	.	136	129	188	0	.	55	1	54	0	0
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	87379740	87379740	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRID1-142	NM_017551	exon14	c.C2244T	p.Y748Y	GGCTGCGTATTCC	.	194	166	298	2	.	8	0	8	0	0
MMRN2	79812	hgsc.bcm.edu	37	10	88702603	88702603	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MMRN2-153	NM_024756	exon6	c.C1938T	p.S646S	CAGCCCGCTAGCG	.	8	7	2	0	.	55	3	52	0	0
MYOF	26509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95103662	95103662	+	Missense_Mutation	SNP	C	C	T	rs201449564		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYOF-93	NM_013451	exon38	c.G4277A	p.R1426Q	ATGTCCCGGCATG	.	67	62	91	1	C|1.000;T|0.000	7	1	6	0	0
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633162	111633162	+	Missense_Mutation	SNP	C	C	T	rs201456347		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	XPNPEP1-94	NM_020383	exon16	c.G1415A	p.R472Q	ATTGTCCGCGTCA	.	146	129	222	0	C|0.999;T|0.001	33	1	32	0	0
MIR5694	100847064	bcgsc.ca	37	10	122359040	122359040	+	RNA	SNP	A	A	G	rs11594669	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	.	.	.	.	AGAGGGACAGAGA	.	114	6	146	1	A|0.765;G|0.235	0	0	0	0	0
DMBT1	1755	ucsc.edu	37	10	124339362	124339362	+	Missense_Mutation	SNP	T	T	A	rs202149132	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DMBT1-494	NM_007329	exon10	c.T948A	p.N316K	CCACAATGGCTGG	.	148	37	225	7	T|0.994;A|0.006	0	0	0	0	0
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124458908	124458908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C10orf120-91	NM_001010912	exon2	c.G197A	p.R66K	TCTGATCTGTAGA	.	65	18	79	0	.	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MUC6-23	NM_005961	exon31	c.T5966C	p.F1989S	GTCTGGAAGGATG	.	1490	59	2745	54	.	0	0	0	0	0
TRIM5	85363	broad.mit.edu	37	11	5701024	5701024	+	Silent	SNP	C	C	T	rs148054117	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRIM5-227	NM_033093	exon2	c.G384A	p.T128T	GAGGAACGTGTGG	.	126	5	169	0	C|1.000;T|0.000	10	8	2	0	0
NRIP3	56675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9009807	9009807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP3-186	NM_020645	exon2	c.G197A	p.R66K	AGGCGCCTCTGCA	.	99	88	127	0	.	1	0	1	0	0
MICAL2	9645	bcgsc.ca	37	11	12265542	12265542	+	Silent	SNP	A	A	G	rs2270511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MICAL2-92	NM_014632	exon21	c.A2667G	p.L889L	TAAACTACTCTCT	.	114	5	136	0	A|0.826;G|0.174	0	0	0	0	0
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	16838355	16838355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEKHA7-227	NM_175058	exon11	c.G1858A	p.A620T	TGACAGCGTGGCC	.	70	63	139	0	.	0	0	0	0	0
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18195449	18195449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MRGPRX4-91	NM_054032	exon1	c.G646A	p.V216M	CTGTACGTGACCA	.	68	63	89	1	.	0	0	0	0	0
KIAA1549L	25758	bcgsc.ca	37	11	33564163	33564163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_012194	exon1	c.T163C	p.S55P	GAACTGTCCCATC	.	91	5	107	0	.	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788731	47788731	+	Missense_Mutation	SNP	G	G	C	rs112054219		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FNBP4-91	NM_015308	exon1	c.C110G	p.T37S	GGCTCAGTGTCGG	.	9	7	4	0	.	1	0	1	0	0
TRIM51	84767	bcgsc.ca	37	11	55656479	55656479	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_032681	exon5	c.761+2T>G	.	CACAGGTGAGTGC	.	137	17	145	5	.	0	0	0	0	0
SMTNL1	219537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57313434	57313434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMTNL1-23	NM_001105565	exon4	c.G998A	p.R333H	CAGAGCGCAGGGT	.	128	58	173	1	.	0	0	0	0	0
C11orf95	65998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63531283	63531283	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001144936	exon5	c.C1644T	p.D548D	CTCTTCGTCCTCC	.	11	10	42	0	.	13	0	13	0	0
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63679516	63679516	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RCOR2-92	NM_173587	exon12	c.C1393T	p.R465X	GCTGTCGGAGCAG	.	10	10	18	0	.	3	0	3	0	0
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64127716	64127716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPS6KA4-1036	NM_001006944	exon3	c.C209T	p.A70V	GCAAGGCGGCGCT	.	48	40	32	0	.	8	0	8	0	0
MIR192	406967	broad.mit.edu	37	11	64658676	64658676	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	.	.	.	.	GCACTGGCTGTCA	.	50	5	78	0	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65810719	65810719	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GAL3ST3-91	NM_033036	exon3	c.C555T	p.R185R	GGGCGCGCGCAGG	.	108	57	42	0	.	0	0	0	0	0
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66483354	66483354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SPTBN2-155	NM_006946	exon3	c.C256T	p.R86W	CGTCCCGGAGGTC	.	114	54	152	0	.	3	0	3	0	0
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94340769	94340769	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIWIL4-91	NM_152431	exon14	c.C1803T	p.C601C	GACTTGCAAGCTC	.	46	41	60	1	.	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108098418	108098418	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATM-3419	NM_000051	exon2	c.C67T	p.R23X	ACAGAACGAAAGG	.	119	110	212	0	.	0	0	0	0	0
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121458770	121458770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SORL1-228	NM_003105	exon28	c.C3856T	p.R1286C	AAGAACCGCCAGC	.	53	19	109	2	.	4	2	2	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	1906598	1906598	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CACNA2D4-23	NM_172364	exon35	c.C3099T	p.C1033C	GGGCCCGCACTCC	.	30	21	25	0	.	0	0	0	0	0
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2937196	2937196	+	Missense_Mutation	SNP	A	A	G	rs200104814		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP2-187	NM_031474	exon4	c.T596C	p.L199P	GCTTTTAGGACCC	.	38	12	38	0	A|0.999;G|0.001	3	3	0	0	0
CD9	928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6342621	6342621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CD9-91	NM_001769	exon4	c.C317T	p.A106V	TAGCTGCGGCCAT	.	193	98	144	0	.	265	136	129	0	0
GPR19	2842	broad.mit.edu	37	12	12814274	12814274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPR19-91	NM_006143	exon4	c.1109delA	p.N370fs	ACGTAGTTTTTTT	.	186	6	117	0	.	0	0	0	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21962829	21962829	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC9-96	NM_005691	exon35	c.T4272C	p.I1424I	CTGAGCAATTTCT	.	35	14	18	0	.	1	1	0	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26493203	26493203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon56	c.G7916A	p.G2639D	CTGTCGCCTTCAT	.	145	56	110	0	.	22	10	12	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26784944	26784944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon22	c.A2789G	p.Q930R	ACCATCTGGGTCA	.	141	58	139	0	.	0	0	0	0	0
PLEKHA8P1	51054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45567092	45567092	+	RNA	SNP	C	C	T	rs145353585	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEKHA8P1-226	.	.	.	.	TTAACGCGGCCAC	.	282	116	210	0	C|1.000;T|0.000	2	2	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420173	49420173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL2-612	NM_003482	exon48	c.G15576A	p.L5192L	GTGAGGCAGCAGC	.	183	86	186	0	.	30	18	12	0	0
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49483720	49483720	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHH-710	NM_021044	exon3	c.C1113T	p.P371P	CCCGCCGGGGAGC	.	140	65	102	0	.	16	9	7	0	0
DHH	50846	bcgsc.ca	37	12	49483989	49483989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHH-710	NM_021044	exon3	c.G844A	p.A282T	CTGGCGCGGGCGC	.	121	67	49	2	.	3	3	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	431	24	258	10	G|0.998;A|0.002	1222	729	491	2	0
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52627326	52627326	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT7-90	NM_005556	exon1	c.C246A	p.P82P	CGACCCCTCCCTC	.	142	60	90	0	.	0	0	0	0	0
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53088535	53088535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT77-187	NM_175078	exon5	c.G955A	p.V319I	GGATGACGTTGGT	.	151	76	138	0	.	0	0	0	0	0
ESYT1	23344	broad.mit.edu	37	12	56536719	56536719	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ESYT1-95	NM_015292	exon27	c.2987+2T>C	.	TGCCGGTGAGACC	.	109	5	75	0	.	0	0	0	0	0
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57389484	57389484	+	Missense_Mutation	SNP	G	G	A	rs145408449	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPR182-500	NM_007264	exon2	c.G491A	p.R164H	GGCAGCGTTACCA	.	177	14	136	0	G|1.000;A|0.000	0	0	0	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57581075	57581075	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRP1-596	NM_002332	exon42	c.C6867A	p.A2289A	CCTGGCCTATCAC	.	269	118	209	1	.	0	0	0	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57584685	57584685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRP1-596	NM_002332	exon43	c.C7129T	p.R2377C	GACATCCGTACCC	.	178	28	150	0	.	1	1	0	0	0
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57965871	57965871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIF5A-517	NM_004984	exon14	c.G1390A	p.E464K	GACAACGAGAAGG	.	229	109	172	1	.	0	0	0	0	0
MON2	23041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62940761	62940761	+	Missense_Mutation	SNP	G	G	A	rs201327821		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MON2-514	NM_015026	exon22	c.G2662A	p.V888M	GAATGCGTGTTGC	.	202	91	157	1	G|0.999;A|0.001	10	4	6	0	0
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69210628	69210628	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MDM2-1270	NM_002392	exon4	c.C211T	p.R71X	ACTAAACGATTAT	.	77	26	42	0	.	3	1	2	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78515967	78515967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NAV3-279	NM_014903	exon16	c.C3997T	p.P1333S	TCCAGCCCAGCAT	.	263	45	239	0	.	0	0	0	0	0
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86377312	86377312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MGAT4C-93	NM_013244	exon6	c.T284C	p.L95S	CTTTGTAAAGGTG	.	105	60	59	0	.	0	0	0	0	0
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479859	88479859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CEP290-96	NM_025114	exon34	c.G4394A	p.R1465Q	ATTATTCGAATGT	.	107	47	82	0	.	2	1	1	0	0
C12orf42	374470	broad.mit.edu	37	12	103699896	103699896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C12orf42-91	NM_001099336	exon5	c.A487G	p.N163D	AACTGTTCCAAGC	.	103	4	61	0	.	0	0	0	0	0
ALDH1L2	160428	ucsc.edu;bcgsc.ca	37	12	105464485	105464485	+	Silent	SNP	G	G	A	rs74449999	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ALDH1L2-91	NM_001034173	exon3	c.C291T	p.S97S	ACCCACGGATCTG	.	235	117	168	2	G|0.976;A|0.024	0	0	0	0	0
PRDM4	11108	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108145670	108145670	+	Silent	SNP	G	G	A	rs146564582	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDM4-154	NM_012406	exon5	c.C648T	p.D216D	AACACCGTCCATC	.	157	63	115	1	G|0.993;A|0.007	33	17	16	0	0
RNFT2	84900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117273985	117273985	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001109903	exon10	c.1099-1G>C	.	CTCAAAGAACTAT	.	107	45	91	0	.	0	0	0	0	0
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXW8-229	NM_153348	exon11	c.C1685T	p.A562V	AGTTTGCGGTGGA	.	115	53	88	0	.	0	0	0	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120613993	120613993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCN1L1-94	NM_006836	exon10	c.C866T	p.T289M	TCAAGCGTCACTG	.	154	23	121	0	.	8	7	1	0	0
RHOF	54509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122217484	122217484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RHOF-660	NM_019034	exon5	c.C556T	p.R186W	CCTCCCGGAAGAC	.	170	86	136	2	.	48	26	22	0	0
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122261635	122261635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SETD1B-86	NM_015048	exon12	c.C5021T	p.T1674M	ACGACACGCTCTG	.	148	21	148	0	.	10	8	2	0	0
VPS37B	79720	broad.mit.edu;bcgsc.ca	37	12	123351799	123351799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	VPS37B-90	NM_024667	exon4	c.C722T	p.P241L	AGGGGCGGGCACT	.	73	45	62	1	.	21	3	18	0	0
RNF17	56163	bcgsc.ca	37	13	25367282	25367282	+	Missense_Mutation	SNP	A	A	C	rs1451568	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF17-228	NM_001184993	exon10	c.A1038C	p.K346N	AAAGAAAAAGGTT	.	105	5	123	0	A|0.801;C|0.199	0	0	0	0	0
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30088674	30088674	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC7A1-90	NM_003045	exon13	c.G1833A	p.A611A	CAGGGACGCCTCC	.	44	43	75	0	.	8	0	8	0	0
ARL11	115761	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50204724	50204724	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARL11-90	NM_138450	exon2	c.C141T	p.N47N	TTTCAACGTGGAG	.	163	139	201	2	.	4	0	4	0	0
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	103701788	103701788	+	Missense_Mutation	SNP	G	G	A	rs145541774		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC10A2-94	NM_000452	exon5	c.C770T	p.T257M	GCAACCGTTCGGC	.	97	8	137	0	G|1.000;A|0.000	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP11A-138	NM_032189	exon25	c.G2888A	p.R963H	GCTGGCGCGTGTT	.	106	100	161	1	.	3	0	3	0	0
CHD8	57680	ucsc.edu	37	14	21859130	21859130	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CHD8-277	NM_001170629	exon36	c.A7158G	p.T2386T	GTTAGCTGTCTGT	.	38	4	93	0	.	36	36	0	0	0
IRF9	10379	hgsc.bcm.edu;bcgsc.ca	37	14	24631381	24631381	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF9-69	NM_006084	exon2	c.C28T	p.R10X	TGCACCCGAAAAC	.	167	151	267	2	.	24	0	24	0	0
RPL10L	140801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120739	47120739	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL10L-91	NM_080746	exon1	c.C201T	p.A67A	ACGGGCGGCCTCC	.	93	78	126	1	.	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52478319	52478319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NID2-158	NM_007361	exon17	c.G3503A	p.R1168H	CCAGCACGGCTGA	.	89	70	110	0	.	2	2	0	0	0
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59113818	59113818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DACT1-291	NM_016651	exon4	c.G2477A	p.R826Q	GCTTTCGGTCTGG	.	50	46	57	0	.	0	0	0	0	0
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	59970693	59970693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JKAMP-67	NM_016475	exon7	c.T839C	p.L280P	TGCCCCTTTTGGC	.	108	8	129	0	.	50	50	0	0	0
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	73743997	73743997	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NUMB-1062	NM_001005743	exon13	c.C1245T	p.T415T	CCACTCGGTCCCT	.	48	34	82	0	.	0	0	0	0	0
CCDC88C	440193	broad.mit.edu	37	14	91883084	91883084	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CCDC88C-25	NM_001080414	exon2	c.A159G	p.Q53Q	TTACATTTGCAGC	.	100	4	161	0	.	0	0	0	0	0
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416412	105416412	+	Silent	SNP	G	G	A	rs187143773	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AHNAK2-47	NM_138420	exon7	c.C5376T	p.D1792D	CTCGACGTCCACC	.	186	161	240	3	G|0.999;A|0.001	1	0	1	0	0
HERC2P3	283755	ucsc.edu	37	15	20644830	20644830	+	RNA	SNP	T	T	C	rs28718154		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HERC2P3-92	.	.	.	.	TCTCCATGAGGCA	.	151	66	253	45	.	13	8	5	0	0
CYFIP1	23191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	22940826	22940826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYFIP1-99	NM_014608	exon11	c.C1091T	p.A364V	AGCTGGCGCGCTA	.	150	133	249	1	.	11	1	10	0	0
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34396376	34396376	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PGBD4-90	NM_152595	exon1	c.C1644T	p.Y548Y	CCAATACGACAAG	.	51	46	94	0	.	2	0	2	0	0
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45394110	45394110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DUOX2-95	NM_014080	exon21	c.C2732T	p.S911L	AATCCCGACTCCC	.	192	168	305	0	.	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63063254	63063289	+	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TLN2-573	NM_015059	exon39	c.5288_5323del	p.1763_1775del	TGACGGTGCTGGA	.	69	27	143	0	.	0	0	0	0	0
IGDCC3	9543	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622120	65622120	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IGDCC3-93	NM_004884	exon12	c.C1941T	p.I647I	GACCCCGATGTGG	.	130	39	280	1	.	0	0	0	0	0
CYP11A1	1583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74632008	74632008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYP11A1-92	NM_000781	exon6	c.G1077A	p.A359A	GTGCCGCGCAGCC	.	80	73	149	2	.	841	34	805	1	1
CSPG4	1464	broad.mit.edu	37	15	75980201	75980201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CSPG4-229	NM_001897	exon3	c.G3205A	p.V1069M	CGGCCACGATACT	.	207	6	258	1	.	0	0	0	0	0
ADAMTS7	11173	bcgsc.ca	37	15	79068601	79068601	+	Silent	SNP	G	G	A	rs189745536		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADAMTS7-226	NM_014272	exon11	c.C1635T	p.S545S	CCAGGCGCTCCAG	.	191	17	207	1	G|0.999;A|0.001	0	0	0	0	0
RASGRF1	5923	broad.mit.edu	37	15	79307707	79307707	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RASGRF1-662	NM_001145648	exon13	c.T1788C	p.F596F	TTCTTCAAATGCG	.	80	3	125	1	.	2	2	0	0	0
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79323771	79323771	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RASGRF1-662	NM_001145648	exon8	c.C1233T	p.Y411Y	CTTGGCGTAGTCC	.	86	80	164	1	.	6	0	6	0	0
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81271798	81271798	+	Missense_Mutation	SNP	C	C	T	rs185628590		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MESDC2-90	NM_015154	exon3	c.G467A	p.R156H	ATAGCACGGTCTG	.	71	62	127	0	C|0.999;T|0.000	72	1	71	0	0
IGF1R	3480	broad.mit.edu	37	15	99442820	99442820	+	Missense_Mutation	SNP	G	G	A	rs148662051		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IGF1R-1490	NM_000875	exon5	c.G1217A	p.R406H	ACCTTCGCCTCAT	.	102	4	154	1	G|1.000;A|0.000	6	6	0	0	0
PRR25	388199	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	857545	857545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRR25-135	NM_001013638	exon2	c.C542T	p.P181L	AGGCGCCGGGCCT	.	31	13	12	0	.	0	0	0	0	0
CASKIN1	57524	broad.mit.edu	37	16	2235145	2235145	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CASKIN1-92	NM_020764	exon12	c.T1206G	p.G402G	GGCGTGACCCCCG	.	107	18	48	8	.	10	10	0	0	0
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2514193	2514193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C16orf59-90	NM_025108	exon9	c.G1118A	p.R373Q	AGCTGCGAGTGGC	.	155	32	118	0	.	1	0	1	0	0
PAQR4	124222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3021279	3021279	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PAQR4-68	NM_152341	exon2	c.C288T	p.S96S	AGGCTCCGTGCTC	.	140	67	113	2	.	29	21	8	0	0
ZSCAN10	84891	hgsc.bcm.edu;mdanderson.org	37	16	3139112	3139112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZSCAN10-227	NM_032805	exon5	c.G2158A	p.A720T	CGCGGGCGTGGGT	.	80	30	9	0	.	0	0	0	0	0
ZNF205	7755	broad.mit.edu	37	16	3169354	3169354	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF205-90	NM_003456	exon7	c.C693T	p.G231G	GTGGGGCGTCCCG	.	97	5	51	0	.	25	23	2	0	0
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3170139	3170139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF205-90	NM_003456	exon7	c.C1478T	p.A493V	TCACCGCGCACCA	.	385	204	141	0	.	18	11	7	0	0
ZNF213	7760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3191159	3191159	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF213-90	NM_004220	exon6	c.C1191T	p.G397G	CACGGGCGAGAAG	.	281	114	164	0	.	20	11	9	0	0
C16orf96	342346	broad.mit.edu	37	16	4650307	4650307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145011	exon16	c.G3415A	p.A1139T	GAGCCCGCCAACC	.	60	4	22	0	.	1	1	0	0	0
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4802835	4802835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF500-93	NM_021646	exon6	c.G985A	p.E329K	CACATTCGGGGCA	.	181	82	147	0	.	5	3	2	0	0
EARS2	124454	broad.mit.edu	37	16	23546407	23546407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EARS2-90	NM_001083614	exon4	c.A760C	p.T254P	TGGCAGTGGAGAC	.	256	26	210	18	.	18	17	1	0	0
GTF3C1	2975	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27483225	27483225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GTF3C1-94	NM_001520	exon30	c.G4370A	p.R1457Q	TACTCCCGATAGA	.	136	61	128	2	.	40	26	14	0	0
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594258	30594258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF785-91	NM_152458	exon3	c.G841A	p.E281K	GCTTCTCGCCCGT	.	183	67	147	0	.	17	10	7	0	0
STX1B	112755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STX1B-90	NM_052874	exon9	c.G692A	p.R231H	TCGATGCGGTCAA	.	247	108	262	0	.	0	0	0	0	0
PRSS8	5652	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31143831	31143831	+	Silent	SNP	G	G	A	rs148214625		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_002773	exon5	c.C624T	p.D208D	CTTGGCGTCGATG	.	281	128	282	2	G|0.999;A|0.001	114	112	2	0	0
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46697064	46697064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	VPS35-90	NM_018206	exon14	c.G1658A	p.W553X	TTTTCCCATTTGT	.	73	31	26	0	.	0	0	0	0	0
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47644802	47644802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PHKB-154	NM_000293	exon14	c.C1429T	p.R477C	GATCAACGTAACG	.	167	70	185	2	.	75	38	37	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	8	8	0	0	G|0.001;A|0.999	0	0	0	0	0
KATNB1	10300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57775658	57775658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KATNB1-90	NM_005886	exon3	c.C100T	p.R34W	TCCGGGCGGCTGC	.	189	24	173	0	.	44	34	10	0	0
CDH16	1014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66944294	66944294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH16-93	NM_004062	exon15	c.G2036A	p.R679H	TCTTGGCGGGGTG	.	177	93	130	2	.	0	0	0	0	0
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66946627	66946627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH16-93	NM_004062	exon10	c.C1222T	p.R408X	CTGCTCGGAGTGG	.	183	79	157	0	.	0	0	0	0	0
ENKD1	84080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67697371	67697371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_032140	exon6	c.C832T	p.R278C	GCATGCGCGTGTG	.	97	42	38	0	.	52	22	30	0	0
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68732181	68732181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH3-950	NM_001793	exon16	c.G2368A	p.A790T	GACGCCGCGTCCC	.	221	13	143	0	.	2	2	0	0	0
COG8	84342	bcgsc.ca;mdanderson.org	37	16	69373210	69373210	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COG8-91	NM_032382	exon1	c.G246A	p.L82L	GAAGGCCAAGTCG	.	72	38	30	1	.	11	3	8	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71976623	71976623	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PKD1L3-68	.	.	.	.	ATGGCCGTTATCA	.	325	159	211	1	.	0	0	0	0	0
HPR	3250	ucsc.edu;bcgsc.ca	37	16	72108240	72108240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HPR-515	NM_020995	exon3	c.G149A	p.R50H	TGTTTCGCTACCA	.	1231	546	932	3	.	1	0	1	0	0
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74491779	74491779	+	Silent	SNP	G	G	A	rs148460697	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GLG1-136	NM_001145667	exon24	c.C3258T	p.R1086R	ACGCCCGCGGCCA	.	251	47	191	0	G|1.000;A|0.000	1	1	0	0	0
KARS	3735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	75665701	75665701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KARS-92	NM_001130089	exon9	c.G1052A	p.R351Q	TCATTCCGGAACT	.	234	108	206	1	.	197	101	96	0	0
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	85699630	85699630	+	Missense_Mutation	SNP	T	T	C	rs17853763		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_014615	exon13	c.T2807C	p.V936A	TTGGTGTTGCTGC	.	145	8	78	0	T|1.000;|0.000	22	22	0	0	0
FOXC2	2303	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	86602305	86602305	+	Missense_Mutation	SNP	A	A	G	rs138612549		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FOXC2-226	NM_005251	exon1	c.A1364G	p.N455S	TGTTCAACTCCCA	.	196	100	154	0	A|0.998;G|0.002	1	1	0	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89346959	89346959	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANKRD11-139	NM_001256183	exon9	c.G5991A	p.A1997A	GGGGTCCGCGGGG	.	70	34	29	0	.	15	7	8	0	0
SPG7	6687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89611117	89611117	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SPG7-226	NM_003119	exon10	c.C1386T	p.D462D	TTTGGACGGTGCT	.	283	127	200	1	.	100	52	48	0	0
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1561614	1561614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRPF8-525	NM_006445	exon34	c.G5438A	p.R1813H	CCTGTGCGTGGGT	.	172	161	324	0	.	118	1	117	0	0
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2265553	2265553	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGSM2-68	NM_001098509	exon4	c.G447A	p.A149A	CCTGGCGGAAAAC	.	70	66	131	0	.	0	0	0	0	0
CLUH	23277	broad.mit.edu	37	17	2598787	2598787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_015229	exon14	c.G2308A	p.V770M	CGTCCACGGGCAG	.	59	4	53	0	.	31	30	1	0	0
ATP2A3	489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3840801	3840801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP2A3-156	NM_174956	exon15	c.G2230A	p.V744M	CAGCCACGATGGA	.	144	136	314	1	.	1	1	0	0	0
AIPL1	23746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6329050	6329050	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AIPL1-90	NM_014336	exon6	c.G885A	p.P295P	CATGGACGGCTCC	.	60	56	76	1	.	0	0	0	0	0
KIAA0753	9851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6528100	6528100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA0753-90	NM_014804	exon4	c.G800A	p.R267Q	AGCATTCGGGCAG	.	62	58	87	1	.	0	0	0	0	0
TP53	7157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574017	7574017	+	Missense_Mutation	SNP	C	C	T	rs121912664		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TP53-70225	NM_000546	exon10	c.G1010A	p.R337H	TCGAAGCGCTCAC	.	97	91	162	1	.	6	0	6	0	0
KDM6B	23135	bcgsc.ca	37	17	7751926	7751926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KDM6B-205	NM_001080424	exon11	c.G2320T	p.A774S	CCACCAGCCCTAC	.	23	4	38	0	.	1	1	0	0	0
LRRC48	83450	ucsc.edu;bcgsc.ca	37	17	17900841	17900841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC48-46	NM_031294	exon9	c.C892T	p.R298W	GAGAAGCGGAAAA	.	209	186	299	3	.	0	0	0	0	0
EVPLL	645027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18286644	18286644	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145127	exon8	c.C732T	p.D244D	GGAGGACGGCAAG	.	45	44	60	0	.	0	0	0	0	0
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27419408	27419408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYO18A-22	NM_078471	exon34	c.G5140A	p.E1714K	GGTCTTCGATCTC	.	66	57	120	0	.	9	0	9	0	0
PIP4K2B	8396	ucsc.edu	37	17	36936800	36936800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIP4K2B-266	NM_003559	exon4	c.C412T	p.R138C	GGAAACGCGTGCC	.	106	4	136	0	.	22	20	2	0	0
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39018841	39018841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT12-91	NM_000223	exon7	c.G1363A	p.A455T	ACTGTGCTTGTGA	.	78	73	129	0	.	0	0	0	0	0
KRT32	3882	bcgsc.ca	37	17	39619193	39619193	+	Missense_Mutation	SNP	C	C	T	rs11078993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT32-90	NM_002278	exon6	c.G1106A	p.R369Q	TCAGCCCGGATCT	.	119	7	154	0	C|0.935;T|0.065	0	0	0	0	0
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40574938	40574938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTRF-153	NM_012232	exon1	c.A178G	p.K60E	TGATTTTGTCCAG	.	137	125	191	0	.	112	5	107	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	7	7	4	0	G|0.505;A|0.495	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42254580	42254580	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASB16-227	NM_080863	exon3	c.G1044A	p.A348A	CGGGGCGCAGCCA	.	33	11	37	0	.	6	5	1	0	0
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47590175	47590175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NGFR-947	NM_002507	exon6	c.C1088T	p.A363V	ACCTGGCGGGCGA	.	204	95	258	0	.	0	0	0	0	0
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48741343	48741343	+	Silent	SNP	G	G	A	rs191057975		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC3-93	NM_003786	exon10	c.G1209A	p.A403A	ACGTGCGTCCACT	.	104	93	298	0	G|0.999;A|0.001	2	0	2	0	0
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73484865	73484865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA0195-91	NM_014738	exon7	c.C638T	p.P213L	TGGAGCCGGGAGA	.	49	40	57	0	.	17	1	15	1	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76570839	76570839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH17-142	NM_173628	exon2	c.A301G	p.I101V	GGCTGATGTCGCC	.	140	130	220	0	.	0	0	0	0	0
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865456	79865456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCYT2-68	NM_002861	exon6	c.C511T	p.R171W	ACTCCCGGTACTC	.	128	112	193	1	.	50	0	50	0	0
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039618	80039618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FASN-90	NM_004104	exon37	c.G6265A	p.A2089T	AGGACGCCATGCG	.	115	46	200	0	.	37	19	18	0	0
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18981163	18981163	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001142966	exon6	c.G585A	p.T195T	TTTCACGGAATTT	.	90	84	145	0	.	0	0	0	0	0
LAMA3	3909	ucsc.edu;bcgsc.ca	37	18	21456302	21456302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LAMA3-100	NM_001127717	exon39	c.C5043T	p.T1681T	GTATACCGGACGG	.	169	162	221	3	.	0	0	0	0	0
SETBP1	26040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	42531274	42531274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SETBP1-155	NM_015559	exon4	c.G1969A	p.V657M	CTCGGCGTGTTGG	.	101	43	134	2	.	0	0	0	0	0
TXNL1	9352	broad.mit.edu	37	18	54305668	54305668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TXNL1-90	NM_004786	exon1	c.G4A	p.V2M	CCCCCACCATCCT	.	45	3	59	0	.	40	40	0	0	0
SERPINB8	5271	broad.mit.edu;bcgsc.ca	37	18	61649031	61649031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SERPINB8-226	NM_001031848	exon4	c.G383T	p.C128F	AAGAGTGCAGGAA	.	60	5	74	0	.	7	7	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501714	501714	+	Missense_Mutation	SNP	C	C	A	rs78071082	bycluster;byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MADCAM1-90	NM_130760	exon4	c.C713A	p.P238Q	CCTCCCCGGAGTC	.	138	8	179	3	A|0.000;C|1.000;T|0.000	0	0	0	0	0
LPPR3	0	broad.mit.edu	37	19	814548	814548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_024888	exon6	c.C801T	p.F267F	AAAGGCGAAGACC	.	55	4	86	0	.	0	0	0	0	0
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2129403	2129403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AP3D1-90	NM_001261826	exon7	c.A646G	p.K216E	AGTTCTTAGGGTT	.	213	196	306	1	.	24	2	22	0	0
TJP3	27134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3734400	3734400	+	Missense_Mutation	SNP	G	G	A	rs200603772	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TJP3-92	NM_001267561	exon8	c.G980A	p.R327Q	CTCAGCGGAGCCC	.	47	47	61	0	G|0.999;T|0.000	0	0	0	0	0
PLIN3	10226	ucsc.edu	37	19	4852250	4852250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLIN3-90	NM_001164189	exon5	c.A412G	p.S138G	TGGCGCTAGACAC	.	40	4	67	0	.	148	148	0	0	0
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5143983	5143983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KDM4B-226	NM_015015	exon19	c.C2556T	p.C852C	GAAATGCGTGTAC	.	43	39	107	0	.	0	0	0	0	0
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6452332	6452332	+	Silent	SNP	G	G	A	rs148491192		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC25A23-92	NM_024103	exon8	c.C1062T	p.A354A	GTAGACGGCCAGG	.	64	64	136	0	G|1.000;A|0.000	2	0	2	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	9	7	0	0	A|0.411;G|0.589	0	0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9076759	9076759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MUC16-566	NM_024690	exon3	c.A10687G	p.T3563A	CCATGGTACTCAT	.	346	8	502	1	.	0	0	0	0	0
TNPO2	30000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12814290	12814290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TNPO2-227	NM_013433	exon19	c.G2161A	p.V721I	TGCAGACGGAGAT	.	135	125	245	0	.	74	0	74	0	0
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12910730	12910730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDX2-90	NM_005809	exon5	c.T454A	p.F152I	CATCCACGGAGCG	.	117	106	191	1	.	738	1	736	0	1
RLN3	117579	broad.mit.edu	37	19	14139168	14139168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RLN3-90	NM_080864	exon1	c.G152T	p.R51L	GCTCCCGGTGGAG	.	124	4	201	0	.	0	0	0	0	0
CYP4F11	57834	broad.mit.edu;bcgsc.ca	37	19	16045121	16045121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYP4F11-91	NM_001128932	exon2	c.G98A	p.R33H	AGGACGCGGGCCA	.	137	10	192	1	.	0	0	0	0	0
NR2F6	2063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17343368	17343368	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2F6-186	NM_005234	exon4	c.C1008T	p.T336T	ATACTCGGTGAGG	.	31	29	26	0	.	46	0	46	0	0
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19313147	19313147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2C2AP-23	NM_176880	exon4	c.C296T	p.S99L	TGAAGCGAGTTGT	.	80	69	150	0	.	1	0	1	0	0
CHST8	64377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34263477	34263477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CHST8-156	NM_001127895	exon5	c.G784A	p.E262K	CCCTTCGAGAGGC	.	139	127	218	0	.	0	0	0	0	0
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38931501	38931501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RYR1-100	NM_001042723	exon2	c.G162A	p.A54A	CAACGCGCAGGTC	.	121	103	191	2	.	0	0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40376473	40376473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FCGBP-98	NM_003890	exon25	c.C11831T	p.A3944V	GTGTCCGCACAGA	.	504	18	729	1	.	1	1	0	0	0
AXL	558	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41726567	41726567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AXL-1403	NM_021913	exon2	c.G112A	p.V38M	CCCTTCGTGGGCA	.	134	129	191	2	.	0	0	0	0	0
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42821906	42821906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMEM145-90	NM_173633	exon12	c.G946A	p.G316S	CCGGCCGGCTACG	.	144	8	178	0	.	0	0	0	0	0
IRGQ	126298	bcgsc.ca	37	19	44096816	44096816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRGQ-92	NM_001007561	exon3	c.G1234A	p.A412T	ACGCAGCGGCCCG	.	51	44	95	3	.	1	0	1	0	0
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44636010	44636010	+	Missense_Mutation	SNP	C	C	T	rs200370101		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_013362	exon5	c.C1243T	p.R415C	TCACAACGTTATT	.	74	65	128	0	.	1	0	1	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	15	13	3	0	T|0.861;C|0.139	630	3	625	0	2
TULP2	7288	ucsc.edu	37	19	49399726	49399726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TULP2-93	NM_003323	exon4	c.C172T	p.R58C	AAGAGCGCCAAAG	.	42	4	54	0	.	0	0	0	0	0
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50549939	50549939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF473-91	NM_015428	exon5	c.C2239T	p.R747C	CTTGTCCGCCACC	.	76	71	88	0	.	10	0	10	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	8	8	7	0	T|0.228;C|0.772	0	0	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51837102	51837102	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001163922	exon9	c.A2517G	p.S839S	AGGCCATGAAATC	.	67	3	93	0	.	2	2	0	0	0
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54669182	54669182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMC4-91	NM_001145303	exon6	c.C934T	p.R312C	GCTGGCGCAGCCG	.	86	46	161	0	.	4	2	2	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56544918	56544918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NLRP5-162	NM_153447	exon9	c.G2458A	p.A820T	AGAAATGCACAGA	.	137	126	192	0	.	0	0	0	0	0
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579725	58579725	+	Missense_Mutation	SNP	C	C	T	rs138910447		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF135-91	NM_007134	exon4	c.C1945T	p.R649W	CAGCACCGGAGGA	.	106	98	195	0	C|1.000;T|0.000	4	0	4	0	0
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58982784	58982784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF324-90	NM_014347	exon4	c.G925A	p.G309S	CACAGCGGCGAGA	.	304	252	158	1	.	4	2	2	0	0
MZF1	7593	broad.mit.edu	37	19	59082627	59082627	+	Missense_Mutation	SNP	G	G	A	rs199500324	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MZF1-91	NM_198055	exon2	c.C130T	p.R44C	GCAGGCGTGCAGC	.	94	4	115	0	G|0.999;C|0.000	12	12	0	0	0
RNF144A	9781	broad.mit.edu	37	2	7164508	7164508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF144A-227	NM_014746	exon7	c.T518C	p.F173S	CTGCTTTCAAAAT	.	68	3	113	0	.	1	1	0	0	0
MPV17	4358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27535925	27535925	+	Missense_Mutation	SNP	C	C	T	rs140992482		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MPV17-90	NM_002437	exon3	c.G122A	p.R41Q	AGACCCCGCCTCT	.	175	154	247	1	C|1.000;T|0.000	15	5	10	0	0
CLIP4	79745	bcgsc.ca	37	2	29366643	29366643	+	Silent	SNP	C	C	T	rs115153920	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CLIP4-91	NM_024692	exon7	c.C717T	p.D239D	GGCTGACGCCGCA	.	175	67	271	4	C|0.995;T|0.005	7	4	3	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	131	21	114	0	.	0	0	0	0	0
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48026605	48026605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MSH6-3014	NM_000179	exon4	c.C1483T	p.R495X	GAGGCACGATGTA	.	165	151	258	0	.	2	0	2	0	0
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	54159045	54159045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PSME4-275	NM_014614	exon10	c.C1243A	p.L415I	CTTCTAGACTACC	.	164	147	261	2	.	1	0	1	0	0
GMCL1	64395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70096886	70096886	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GMCL1-93	NM_178439	exon12	c.C1254T	p.F418F	CGGCTTCGACCTA	.	70	66	84	1	.	12	0	12	0	0
PCBP1	5093	broad.mit.edu	37	2	70315210	70315210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCBP1-226	NM_006196	exon1	c.T335A	p.L112Q	GCTCCCTGATTGG	.	89	5	101	0	.	253	253	0	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84899458	84899458	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH6-69	NM_001370	exon40	c.G6462A	p.P2154P	AGCACCGGGAAAC	.	45	37	51	0	.	0	0	0	0	0
MRPS5	64969	ucsc.edu	37	2	95766639	95766639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MRPS5-92	NM_031902	exon9	c.G811A	p.A271T	TCTTTGCCTGAAA	.	43	4	61	0	.	0	0	0	0	0
INPP4A	3631	broad.mit.edu	37	2	99155995	99155995	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	INPP4A-227	NM_004027	exon10	c.C675T	p.F225F	AGTGTTCGGTGGT	.	119	5	189	0	.	0	0	0	0	0
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111921764	111921764	+	Nonsense_Mutation	SNP	C	C	T	rs138706378	byfrequency;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCL2L11-1083	NM_138621	exon4	c.C553T	p.R185X	ATCTTACGACTGT	.	113	99	131	0	C|0.999;G|0.001	2	0	2	0	0
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113885278	113885278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IL1RN-92	NM_173841	exon3	c.G86A	p.R29Q	TCTGCCGACCCTC	.	57	50	62	1	.	0	0	0	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133541906	133541906	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_207363	exon14	c.T2478A	p.P826P	AGATGAAGGGAGT	.	116	111	157	1	.	1	0	1	0	0
DLX1	1745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172951487	172951487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLX1-90	NM_178120	exon2	c.T419C	p.L140S	TGCAGTTGCAGGC	.	107	97	149	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179592882	179592882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TTN-636	NM_001267550	exon67	c.A19669G	p.N6557D	CTACATTTGACAC	.	98	92	119	0	.	0	0	0	0	0
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189948711	189948711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL5A2-92	NM_000393	exon12	c.C851T	p.P284L	CTTACCGGAGATC	.	35	34	42	1	.	0	0	0	0	0
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MFSD6-92	NM_017694	exon3	c.G1129A	p.V377I	TTCGGCGTTCTCA	.	159	131	221	0	.	28	2	26	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3210042	3210042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC4A11-91	NM_001174090	exon15	c.C1928T	p.A643V	AGCACCGCGATGG	.	127	27	135	0	.	1	1	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	8	5	0	0	C|0.751;T|0.249	0	0	0	0	0
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673211	3673211	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SIGLEC1-167	NM_023068	exon15	c.C3987A	p.A1329A	GCCCTGGGCATCC	.	56	23	69	0	.	0	0	0	0	0
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8609053	8609053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLCB1-297	NM_015192	exon4	c.T359G	p.F120C	ATCTCGTGGCTTT	.	219	83	181	0	.	2	2	0	0	0
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269302	13269302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ISM1-68	NM_080826	exon4	c.G759A	p.S253S	AGAATCGAGGACC	.	233	104	153	0	.	9	6	3	0	0
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	17622479	17622479	+	Missense_Mutation	SNP	G	G	A	rs146531264	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RRBP1-92	NM_004587	exon5	c.C848T	p.A283V	ACAGCCGCATCTT	.	151	14	142	0	G|0.999;A|0.001	304	279	24	1	0
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	248	116	223	0	.	16	7	9	0	0
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23586287	23586287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CST9-91	NM_001008693	exon1	c.G215A	p.R72H	AGGACGCGCAACA	.	253	107	182	1	.	0	0	0	0	0
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329666	33329666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NCOA6-292	NM_014071	exon11	c.C4394T	p.S1465L	GGATCCGAAGGCT	.	212	113	175	1	.	49	24	25	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	24	13	0	0	C|0.769;T|0.231	1	0	1	0	0
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43251246	43251246	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADA-653	NM_000022	exon9	c.G828A	p.T276T	ATGCTCCGTGTCC	.	199	84	155	0	.	7	5	2	0	0
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56186832	56186832	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBP1-228	NM_030776	exon6	c.C825T	p.H275H	GACGCCGTGGAGC	.	136	26	86	0	.	0	0	0	0	0
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57611597	57611597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLMO2-45	NM_016045	exon5	c.G394A	p.V132M	CTTTCACGGTAAT	.	236	105	158	0	.	50	28	22	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58452496	58452496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SYCP2-525	NM_014258	exon32	c.G3094A	p.E1032K	CTGATTCTGAATT	.	43	20	22	0	.	4	2	2	0	0
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348149	60348149	+	Missense_Mutation	SNP	G	G	A	rs143400273	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH4-282	NM_001794	exon4	c.G487A	p.G163R	GCCAACGGGCTGA	.	298	145	124	0	G|0.999;A|0.001	9	5	4	0	0
LAMA5	3911	broad.mit.edu;bcgsc.ca	37	20	60891828	60891828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LAMA5-93	NM_005560	exon57	c.C7655T	p.T2552M	ACCACCGTCTGTG	.	155	8	113	1	.	1	1	0	0	0
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62297419	62297419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_032957	exon7	c.G673A	p.G225R	AAGAGCGGAAGCA	.	145	65	101	0	.	0	0	0	0	0
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62309673	62309673	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_032957	exon12	c.C1083T	p.D361D	TGGAGACGACAGC	.	113	37	80	0	.	19	9	10	0	0
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31062246	31062246	+	Missense_Mutation	SNP	C	C	T	rs142436130		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRIK1-137	NM_175611	exon3	c.G346A	p.V116I	CACTGACGGAGGA	.	114	14	163	0	C|1.000;T|0.000	0	0	0	0	0
RRP1B	23076	ucsc.edu;bcgsc.ca	37	21	45107797	45107797	+	Silent	SNP	G	G	A	rs143773984	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RRP1B-91	NM_015056	exon13	c.G1542A	p.P514P	GTCCCCGACAGGT	.	105	94	175	2	G|1.000;A|0.000	7	0	7	0	0
COL6A2	1292	broad.mit.edu;bcgsc.ca	37	21	47539706	47539706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL6A2-515	NM_058175	exon15	c.G1274A	p.R425H	AGGGGCGCAGGGG	.	121	6	167	0	.	0	0	0	0	0
PCNT	5116	broad.mit.edu	37	21	47831434	47831434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCNT-141	NM_006031	exon28	c.C5447A	p.A1816D	GCCAGGCCCTGGA	.	35	9	20	1	.	4	3	1	0	0
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TUBA8-90	NM_018943	exon4	c.G619A	p.E207K	GACAACGAAGCCA	.	144	123	281	0	.	2	0	2	0	0
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20073745	20073745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DGCR8-90	NM_001190326	exon2	c.A259G	p.I87V	CTCCTCATAGACC	.	84	12	111	0	.	3	3	0	0	0
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	25150089	25150089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIWIL3-93	NM_001008496	exon8	c.G869A	p.R290Q	TCTATTCGGAGCA	.	104	96	114	1	.	0	0	0	0	0
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31971289	31971289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SFI1-90	NM_001007467	exon10	c.G995A	p.R332Q	GGGAGCGGAGGGA	.	119	28	136	0	.	2	2	0	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121765	38121765	+	Nonsense_Mutation	SNP	C	C	T	rs118204030		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRIOBP-136	NM_001039141	exon7	c.C3202T	p.R1068X	GGACACCGAGATG	.	43	8	49	1	.	0	0	0	0	0
PPP6R2	9701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50845169	50845169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PPP6R2-92	NM_001242898	exon4	c.C279T	p.S93S	GATCAGCGACCGC	.	48	18	92	0	.	17	10	7	0	0
CNTN6	27255	broad.mit.edu	37	3	1415404	1415404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CNTN6-345	NM_014461	exon15	c.A1903G	p.T635A	ATTCAGACTCGGA	.	201	5	244	0	.	0	0	0	0	0
NUP210	23225	bcgsc.ca	37	3	13368892	13368892	+	Silent	SNP	G	G	A	rs2271509	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NUP210-256	NM_024923	exon32	c.C4332T	p.C1444C	GACAACGCAGGTG	.	209	7	265	2	G|0.541;A|0.459	9	9	0	0	0
C3orf20	84077	ucsc.edu;bcgsc.ca	37	3	14724408	14724408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C3orf20-94	NM_032137	exon3	c.C188T	p.P63L	CTACCCCGTCCGA	.	130	124	187	2	.	0	0	0	0	0
SUSD5	26032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33216542	33216542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SUSD5-24	NM_015551	exon4	c.C434T	p.S145L	GGGAACGAAGGCG	.	119	103	168	0	.	1	0	1	0	0
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36873092	36873092	+	Missense_Mutation	SNP	C	C	T	rs200132397		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRANK1-24	NM_014831	exon21	c.G7850A	p.R2617H	AGGCCACGGACTA	.	177	161	248	2	.	4	0	4	0	0
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080909	38080909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLEC1-161	NM_007337	exon1	c.C193T	p.R65C	CCCCGCCGCCTCA	.	168	156	118	0	.	0	0	0	0	0
RPL14	9045	bcgsc.ca	37	3	40503520	40503520	+	Missense_Mutation	SNP	A	A	G	rs61749576	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL14-90	NM_003973	exon6	c.A445G	p.T149A	AAGGGTACTGCTG	.	58	7	64	0	A|0.962;G|0.038	389	388	0	0	1
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453643	47453643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPN23-227	NM_015466	exon22	c.A4133G	p.Y1378C	CACATTACCTGCA	.	113	102	139	0	.	22	3	19	0	0
AMT	275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49459642	49459642	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AMT-91	NM_001164712	exon2	c.G153A	p.A51A	CGCAAACGCCACC	.	128	112	238	1	.	1	0	1	0	0
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50211681	50211681	+	Silent	SNP	C	C	T	rs200273983		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SEMA3F-279	NM_004186	exon5	c.C354T	p.F118F	GAACTTCGTCAGG	.	240	210	367	1	C|0.999;T|0.001	6	5	1	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52425313	52425313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH1-67	NM_015512	exon62	c.A9860G	p.D3287G	AGCTAGACCCAGC	.	145	131	253	1	.	6	0	6	0	0
NISCH	11188	broad.mit.edu	37	3	52522397	52522397	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NISCH-93	NM_007184	exon16	c.G2889T	p.R963R	GCCTCGGGGCGCC	.	112	4	161	0	.	33	33	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52536666	52536666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STAB1-139	NM_015136	exon6	c.G506A	p.G169E	TGCACGGAGTGTG	.	115	99	145	0	.	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553340	52553340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STAB1-139	NM_015136	exon49	c.G5095A	p.G1699S	GTGAACGGCATCC	.	161	152	243	0	.	4	4	0	0	0
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52820426	52820426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH1-93	NM_002215	exon13	c.C1709T	p.T570I	ACCTCACCATCCA	.	184	177	300	0	.	0	0	0	0	0
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64085464	64085464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRICKLE2-95	NM_198859	exon8	c.C1798T	p.R600W	CGCTCCGGAACTG	.	138	123	228	0	.	1	0	1	0	0
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	99643213	99643213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FILIP1L-45	NM_182909	exon4	c.C466T	p.R156X	GGATTCGTCTGTA	.	95	81	124	0	.	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108174589	108174589	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYH15-73	NM_014981	exon21	c.C2316G	p.I772M	CTTAGTGATTCCA	.	90	84	122	0	.	0	0	0	0	0
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	114070578	114070578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBTB20-95	NM_001164342	exon4	c.G347A	p.R116H	TGTGCGCGCAGCA	.	166	149	236	0	.	0	0	0	0	0
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124854609	124854609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A8-22	NM_024628	exon6	c.T640A	p.Y214N	GTGAATATCCAAT	.	87	79	140	0	.	1	0	1	0	0
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130124438	130124438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_153264	exon14	c.C4288T	p.R1430X	GGAGTACGAGGAG	.	159	138	309	1	.	0	0	0	0	0
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137942520	137942520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARMC8-90	NM_001267041	exon5	c.G380A	p.R127Q	GCCTCCGATGCCT	.	51	39	73	1	.	9	0	9	0	0
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142408558	142408558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLS1-91	NM_001172312	exon10	c.T1080A	p.N360K	AGGCAATCCTAAA	.	61	57	90	0	.	0	0	0	0	0
TNIK	23043	ucsc.edu;bcgsc.ca	37	3	170789054	170789054	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TNIK-550	NM_015028	exon29	c.T3507A	p.Y1169X	CCAAGCATATATT	.	36	4	44	0	.	0	0	0	0	0
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1305792	1305792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAEA-91	NM_005882	exon2	c.G95A	p.R32H	ACAAACGCTTTCG	.	392	178	375	2	.	36	15	21	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CRIPAK-90	NM_175918	exon1	c.C518G	p.P173R	CGTGCCCATGTGG	.	193	35	74	1	CATGT|0.500;GACGC|0.500	51	50	1	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CRIPAK-90	NM_175918	exon1	c.T520C	p.C174R	TGCCCATGTGGAG	.	195	31	80	1	T|0.950;C|0.050	46	46	0	0	0
LETM1	3954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LETM1-90	NM_012318	exon5	c.G844A	p.A282T	TGGTGGCGCTGCC	.	163	71	163	0	.	26	17	9	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	116	23	28	2	.	0	0	0	0	0
STX18	53407	broad.mit.edu	37	4	4461210	4461210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STX18-90	NM_016930	exon3	c.A241G	p.T81A	ACATGGTATGGCT	.	216	5	144	0	.	0	0	0	0	0
EVC	2121	bcgsc.ca	37	4	5800494	5800494	+	Missense_Mutation	SNP	G	G	A	rs2279252	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EVC-92	NM_153717	exon15	c.G2279A	p.R760Q	AGAGCCGGGCCAA	.	520	207	372	4	G|0.980;A|0.020	0	0	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	25	12	1	0	C|0.777;T|0.223	3	3	0	0	0
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25419944	25419944	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANAPC4-293	NM_013367	exon29	c.C2367T	p.A789A	TGCTGCCGCTTTA	.	162	66	104	0	.	25	12	13	0	0
SRP72	6731	bcgsc.ca;mdanderson.org	37	4	57350950	57350950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SRP72-116	NM_006947	exon10	c.G1006A	p.E336K	AGTCCCGAGCATC	.	72	36	51	1	.	37	21	16	0	0
PF4	5196	broad.mit.edu;bcgsc.ca	37	4	74847662	74847662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PF4-90	NM_002619	exon1	c.C9T	p.S3S	GGCTGCGGAGCTC	.	427	11	325	0	.	0	0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79393383	79393383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FRAS1-68	NM_025074	exon52	c.C7421A	p.T2474N	CAGACACCGAGGA	.	310	7	217	0	.	0	0	0	0	0
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109810390	109810390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL25A1-92	NM_198721	exon17	c.G962A	p.R321H	CCTGGACGACCAG	.	100	42	67	0	.	0	0	0	0	0
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	113570694	113570694	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LARP7-93	NM_001267039	exon11	c.C1167T	p.S389S	TAGGAGCGAATGG	.	261	26	175	0	.	0	0	0	0	0
FABP2	2169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120240719	120240719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FABP2-91	NM_000134	exon3	c.G320A	p.R107Q	ATTTCTCGGACAG	.	76	29	63	0	.	35	7	28	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF2-91	NM_002199	exon3	c.C122T	p.A41V	CTAGCCGCATGCA	.	85	35	67	0	.	33	19	14	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629666	187629666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FAT1-34	NM_005245	exon2	c.C1316A	p.T439K	CTTGTTGTTACTT	.	186	95	114	0	.	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	8	7	0	0	G|0.975;A|0.025	0	0	0	0	0
EXOC3	11336	broad.mit.edu	37	5	466881	466881	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EXOC3-90	NM_007277	exon13	c.C2106T	p.D702D	TGGGGACGCCAGC	.	447	8	409	0	.	63	60	3	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1089183	1089183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A7-138	NM_006598	exon4	c.G403A	p.V135I	GGATGACGCCCAG	.	267	131	206	1	.	1	0	1	0	0
PARP8	79668	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50090917	50090917	+	Missense_Mutation	SNP	G	G	A	rs201467874		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PARP8-586	NM_001178056	exon12	c.G1094A	p.R365H	TGAACCGTCCTTG	.	302	143	227	2	G|0.999;A|0.000	38	20	17	1	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	8	8	0	0	G|0.979;C|0.003	0	0	0	0	0
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65000123	65000123	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGTB-90	NM_019072	exon5	c.A357C	p.A119A	GTAAACTGCATTA	.	86	43	59	0	.	0	0	0	0	0
GCNT4	51301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74325230	74325230	+	Silent	SNP	C	C	T	rs148761969	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCNT4-93	NM_016591	exon1	c.G633A	p.S211S	AAGGTCCGACAAG	.	137	74	82	0	C|0.999;T|0.001	3	2	1	0	0
ARSB	411	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78076460	78076460	+	Silent	SNP	C	C	T	rs35757003	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARSB-91	NM_000046	exon8	c.G1362A	p.P454P	TTGAGACGGTGGA	.	177	68	113	0	C|0.951;T|0.049	4	3	1	0	0
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80548557	80548557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CKMT2-90	NM_001825	exon4	c.G196A	p.E66K	ATGGCCGAGTGCC	.	293	127	239	0	.	6	1	5	0	0
HAPLN1	1404	bcgsc.ca	37	5	82937410	82937410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HAPLN1-580	NM_001884	exon5	c.C970T	p.R324C	TGCAGCGCCTTCT	.	373	169	242	3	.	0	0	0	0	0
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126154661	126154661	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LMNB1-226	NM_005573	exon6	c.T987C	p.A329A	GCTTGCTAAAGAA	.	362	172	257	1	.	25	18	7	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	8	8	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHB11	56125	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140581614	140581614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCDHB11-96	NM_018931	exon1	c.C2267T	p.T756M	GTCTGACGGGAGG	.	304	121	197	2	.	1	1	0	0	0
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149755751	149755751	+	Missense_Mutation	SNP	G	G	A	rs146735293	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TCOF1-155	NM_001135243	exon13	c.G2000A	p.R667Q	CCCCCCGGAAAGC	.	213	112	115	1	G|0.998;A|0.002	26	13	13	0	0
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158595954	158595954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF145-525	NM_001199380	exon8	c.G1138A	p.V380I	AAGCTACGACAAT	.	516	222	382	0	.	40	24	16	0	0
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160757958	160757958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABRB2-91	NM_021911	exon9	c.C1009T	p.R337C	TTTGGCGTTGGGG	.	209	89	107	0	.	3	2	1	0	0
TENM2	57451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674406	167674406	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001122679	exon27	c.C6435T	p.F2145F	ACACTTCGACACC	.	191	85	123	1	.	0	0	0	0	0
UNC5A	90249	broad.mit.edu;bcgsc.ca	37	5	176305512	176305512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UNC5A-91	NM_133369	exon13	c.C2056T	p.R686W	ACGCAGCGGTACT	.	464	35	364	1	.	0	0	0	0	0
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176916510	176916510	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PDLIM7-153	NM_005451	exon9	c.G753A	p.T251T	CGTGGGCGTGGCC	.	231	118	97	0	.	0	0	0	0	0
FAM193B	54540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176951844	176951844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001190946	exon6	c.G1638A	p.T546T	TTGTAACGTGTGG	.	102	40	47	0	.	31	17	14	0	0
B4GALT7	11285	broad.mit.edu	37	5	177034387	177034387	+	Silent	SNP	G	G	A	rs140848441		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	B4GALT7-91	NM_007255	exon3	c.G498A	p.L166L	TGACCTGCTCCCT	.	241	5	183	0	G|0.999;A|0.001	41	41	0	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179193193	179193193	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAML1-848	NM_014757	exon2	c.C1182A	p.S394S	GCTGTCCTCTGCC	.	130	64	80	0	.	22	15	7	0	0
FLT4	2324	broad.mit.edu	37	5	180051011	180051011	+	Missense_Mutation	SNP	G	G	A	rs146167161	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLT4-1490	NM_182925	exon11	c.C1472T	p.A491V	GTCACCGCCCTCC	.	236	8	172	0	G|0.999;A|0.001	1	1	0	0	0
JARID2	3720	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15501341	15501341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JARID2-228	NM_004973	exon8	c.C2149T	p.R717W	GAGCACCGGCGGC	.	190	176	245	2	.	1	1	0	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533862	24533862	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ALDH5A1-90	NM_170740	exon11	c.C1569T	p.S523S	GCAGTCCGGCCTT	.	155	6	177	0	.	11	11	0	0	0
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31630341	31630341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPANK1-91	NM_001199238	exon4	c.C773T	p.P258L	AAGCCCGGGCTGG	.	76	65	92	0	.	34	2	32	0	0
C2	717	broad.mit.edu	37	6	31895915	31895915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C2-92	NM_000063	exon2	c.G230A	p.R77Q	CCACCCGGTCTCT	.	28	3	33	0	.	0	0	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32632770	32632770	+	Missense_Mutation	SNP	A	A	G	rs1049069	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HLA-DQB1-22	NM_002123	exon2	c.T184C	p.Y62H	AGATGTATCTGGT	.	232	8	264	1	T|0.524;G|0.096;C|0.174;A|0.206	6	6	0	0	0
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41165918	41165918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TREML2-91	NM_024807	exon2	c.G305A	p.R102Q	CAGTATCGGCCTG	.	61	41	121	1	.	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	10	0	0	C|0.673;A|0.327	11	0	11	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44222512	44222512	+	Silent	SNP	G	G	A	rs146186426		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC35B2-91	NM_178148	exon4	c.C1230T	p.Y410Y	CCGCGCGTAGACT	.	113	103	140	0	G|1.000;A|0.000	109	1	108	0	0
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107390834	107390834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BEND3-71	NM_001080450	exon5	c.C1561T	p.R521W	CCGGCCGCTCGCC	.	28	25	64	0	.	2	0	2	0	0
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158900783	158900783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TULP4-91	NM_020245	exon7	c.C1027T	p.R343C	TGCCAGCGCCCCA	.	56	52	106	0	.	0	0	0	0	0
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	780485	780485	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HEATR2-69	NM_017802	exon3	c.C810T	p.G270G	GGTGGGCGGCTGG	.	105	80	147	0	.	7	1	6	0	0
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4169611	4169611	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SDK1-138	NM_152744	exon27	c.G4011A	p.S1337S	GCAGTCGGCCCTG	.	92	86	116	0	.	0	0	0	0	0
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6042243	6042243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PMS2-1083	NM_000535	exon5	c.C378T	p.H126H	CGATGCGTGGCAG	.	72	8	107	1	.	13	13	0	0	0
C7orf26	79034	broad.mit.edu	37	7	6639759	6639759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C7orf26-91	NM_024067	exon4	c.G880A	p.V294I	CTCAGCGTCCTGC	.	105	4	136	0	.	16	16	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43351432	43351432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HECW1-669	NM_015052	exon4	c.G98A	p.R33H	GCCGACGCCGGTG	.	84	8	97	0	.	0	0	0	0	0
PHKG1	5260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56149873	56149873	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PHKG1-424	NM_001258459	exon8	c.C717T	p.Y239Y	TTTCCCGTAGCCC	.	73	63	119	0	.	4	0	4	0	0
GTPBP10	85865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	89982177	89982177	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GTPBP10-68	NM_001042717	exon2	c.C81T	p.S27S	AGGATCCGGTGGA	.	102	94	165	2	.	1	0	1	0	0
TSC22D4	81628	bcgsc.ca	37	7	100064719	100064719	+	Silent	SNP	A	A	G	rs7806537	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TSC22D4-220	NM_030935	exon5	c.T1051C	p.L351L	CCGCCAATTCCCG	.	93	5	119	0	A|0.644;G|0.356	425	425	0	0	0
DOCK4	9732	broad.mit.edu	37	7	111629088	111629088	+	Missense_Mutation	SNP	C	C	T	rs200422451		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DOCK4-26	NM_014705	exon6	c.G446A	p.R149Q	TCAAGCCGGGCAG	.	117	4	177	1	C|0.999;T|0.000	0	0	0	0	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131913155	131913155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLXNA4-91	NM_020911	exon6	c.C1678T	p.R560W	TCAGCCGGACACA	.	129	115	219	1	.	1	0	1	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151864452	151864452	+	Missense_Mutation	SNP	G	G	A	rs145072739		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL3-1398	NM_170606	exon42	c.C9529T	p.R3177C	GCTTACGCTGTGA	.	31	30	35	0	G|1.000;A|0.000	0	0	0	0	0
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8185743	8185743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080826	exon4	c.C2549T	p.S850L	GTTTCCGAGTGGC	.	142	58	133	0	.	2	2	0	0	0
SOX7	83595	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	10583913	10583913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SOX7-522	NM_031439	exon2	c.G502A	p.G168S	CAGTGCCGGGGGA	.	75	39	13	0	.	0	0	0	0	0
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12950218	12950218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLC1-657	NM_182643	exon13	c.G3643A	p.V1215I	CTTTTACGGCTGC	.	226	112	203	0	.	5	3	2	0	0
MTUS1	57509	broad.mit.edu;bcgsc.ca	37	8	17611345	17611345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MTUS1-92	NM_001001924	exon2	c.A1972G	p.N658D	CAATGTTGGGAAC	.	212	8	176	0	.	16	16	0	0	0
SH2D4A	63898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	19221709	19221709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SH2D4A-90	NM_022071	exon7	c.G833A	p.R278H	CCTTGCGTGTTCC	.	121	60	85	0	.	13	9	4	0	0
ENTPD4	9583	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23302032	23302032	+	Missense_Mutation	SNP	G	G	A	rs200123530	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ENTPD4-92	NM_004901	exon5	c.C500T	p.A167V	TGTTTTGCCCGTG	.	134	70	101	1	G|0.999;T|0.000	13	10	3	0	0
UBE2V2	7336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	48955657	48955657	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBE2V2-659	NM_003350	exon2	c.C81T	p.G27G	AGTAGGCGACGGT	.	191	13	148	0	.	38	37	1	0	0
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	64099263	64099263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	.	.	.	.	AGTGCAGCACCTA	.	240	126	182	0	.	16	5	11	0	0
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939483	68939483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PREX2-390	NM_025170	exon5	c.G468T	p.K156N	ACGGAAGAACACA	.	205	96	143	0	.	0	0	0	0	0
OSR2	116039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99961683	99961683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OSR2-1	NM_053001	exon2	c.C503T	p.T168M	CCAAAACGAAAAA	.	285	138	182	1	.	26	15	11	0	0
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105263855	105263855	+	Missense_Mutation	SNP	G	G	A	rs200286153	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RIMS2-279	NM_001100117	exon24	c.G3857A	p.R1286H	ATGGCCGCATGGA	.	150	60	98	1	G|1.000;T|0.000	9	5	3	1	0
UTP23	84294	bcgsc.ca	37	8	117778849	117778849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UTP23-226	NM_032334	exon1	c.A7T	p.I3F	ATGAAGATCACAA	.	376	173	296	5	.	10	5	5	0	0
C8orf31	286122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144126154	144126154	+	Missense_Mutation	SNP	G	G	A	rs74447754	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C8orf31-91	NM_173687	exon4	c.G275A	p.R92Q	GGGCACGAGACCA	.	152	74	127	0	G|0.990;A|0.010	27	12	15	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	8	8	1	0	A|0.118;G|0.882	9	0	9	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940488	144940488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G6934A	p.D2312N	AGGGGTCGGTGTA	.	452	36	229	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940621	144940621	+	Silent	SNP	C	C	T	rs201634698		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G6801A	p.A2267A	GGTGGCCGCCTGC	.	40	12	3	0	C|0.998;T|0.002	0	0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144942188	144942188	+	Missense_Mutation	SNP	C	C	T	rs187594766	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G5234A	p.R1745H	ACACAGCGCTCCA	.	310	9	212	1	C|0.999;T|0.001	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144994967	144994967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon32	c.C9433T	p.R3145X	CGTCTCGCACAGA	.	164	82	83	0	.	41	20	21	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	14	14	0	0	C|0.740;T|0.260	7	0	7	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	8	8	0	0	G|0.246;A|0.754	23	0	22	1	0
RECQL4	9401	bcgsc.ca	37	8	145738769	145738769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RECQL4-1083	NM_004260	exon14	c.C2296T	p.R766W	CACCCGGCAACTG	.	218	101	104	0	.	0	0	0	0	0
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145745151	145745151	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC14-90	NM_001272036	exon3	c.G42A	p.Q14Q	GCTGCAGTGCCAG	.	198	105	183	0	.	14	7	7	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	15	15	0	0	G|0.992;C|0.006	6	0	6	0	0
WASH1	100287171	bcgsc.ca	37	9	14810	14810	+	Silent	SNP	C	C	G	rs71509922	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_182905	exon11	c.G1395C	p.S465S	CCCCTACGATTCC	.	413	155	274	15	C|0.750;G|0.250	3549	371	3176	1	1
WASH1	100287171	hgsc.bcm.edu	37	9	14858	14858	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_182905	exon11	c.G1347C	p.P449P	CGGTGGCGGCAAA	.	366	63	250	0	.	15	15	0	0	0
SMARCA2	6595	broad.mit.edu	37	9	2088608	2088608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMARCA2-653	NM_139045	exon19	c.G2878A	p.E960K	CTTCCCGAAAAAG	.	104	5	116	0	.	0	0	0	0	0
TESK1	7016	bcgsc.ca	37	9	35609536	35609536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TESK1-641	NM_006285	exon10	c.C1678T	p.R560W	GCTCCCCGGGAGC	.	44	40	28	1	.	22	1	21	0	0
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXO10-637	NM_012166	exon10	c.G2570A	p.R857H	TTGGCACGGCCCC	.	122	109	161	0	.	5	1	4	0	0
ANXA1	301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	75774284	75774284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANXA1-650	NM_000700	exon4	c.G215A	p.R72Q	CTAAGCGAAACAA	.	81	75	194	2	.	124	6	118	0	0
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90503505	90503505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_178828	exon4	c.G4103A	p.R1368H	AAGAACGTAGCAG	.	113	100	155	0	.	0	0	0	0	0
GABBR2	9568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101258725	101258725	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABBR2-518	NM_005458	exon4	c.C702T	p.N234N	GGGATCGTTGGAG	.	105	98	154	1	.	0	0	0	0	0
GPR144	347088	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127239354	127239354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001161808	exon20	c.G2867A	p.R956H	CCCCCCGTCACCC	.	14	11	19	0	.	0	0	0	0	0
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139354235	139354235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_014866	exon15	c.C5165T	p.T1722M	GCCATCGTCCTGG	.	47	41	94	1	.	8	0	8	0	0
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139739046	139739046	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080482	exon1	c.C180T	p.D60D	GCTGGACGGGCCG	.	34	30	17	0	.	3	0	3	0	0
MXRA5	25878	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	3228791	3228791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MXRA5-136	NM_015419	exon7	c.G7453A	p.V2485I	GCAGAACCACACC	.	558	314	398	2	.	0	0	0	0	0
CA5BP1	340591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15720909	15720909	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CA5BP1-108	.	.	.	.	AGATTTCGGAAAC	.	181	77	118	0	.	6	5	1	0	0
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18525233	18525233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDKL5-838	NM_003159	exon2	c.T17G	p.I6S	CTAACATTGGTAA	.	277	134	201	0	.	0	0	0	0	0
NYX	60506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	41333840	41333840	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NYX-108	NM_022567	exon2	c.C1134T	p.F378F	GACCTTCGGGCGC	.	210	113	65	0	.	0	0	0	0	0
CXorf36	79742	broad.mit.edu	37	X	45017131	45017131	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CXorf36-130	NM_176819	exon3	c.C501A	p.G167G	GGCCAGGCCCTAC	.	120	9	43	2	.	0	0	0	0	0
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47039883	47039883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RBM10-626	NM_001204468	exon12	c.C1421T	p.A474V	TTGCTGCGGCCCA	.	368	74	323	1	.	27	15	12	0	0
GATA1	2623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48649679	48649679	+	Missense_Mutation	SNP	G	G	A	rs150572851	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GATA1-1315	NM_002049	exon2	c.G163A	p.A55T	GCCACCGCTGCAG	.	160	82	134	1	G|0.999;A|0.001	5	5	0	0	0
TSPYL2	64061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53112257	53112257	+	Missense_Mutation	SNP	C	C	T	rs192279149	by1000genomes;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TSPYL2-130	NM_022117	exon1	c.C577T	p.R193W	CGGCGGCGGAGGA	.	481	230	385	1	C|0.999;A|0.001	32	32	0	0	0
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54951477	54951477	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRO-131	NM_016157	exon6	c.A1461G	p.E487E	CATTGAACGAGCA	.	672	302	598	2	.	8	0	8	0	0
FAM155B	27112	broad.mit.edu;bcgsc.ca	37	X	68749609	68749609	+	Missense_Mutation	SNP	G	G	A	rs201655694		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FAM155B-131	NM_015686	exon3	c.G1229A	p.R410H	CAGGCCGTGTCAG	.	209	8	177	0	G|0.999;A|0.001	1	1	0	0	0
PDZD11	51248	broad.mit.edu;bcgsc.ca	37	X	69508314	69508314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PDZD11-130	NM_016484	exon3	c.G137A	p.R46Q	ATGGTTCGGGGCA	.	613	20	457	2	.	196	182	13	0	1
TCEAL2	140597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101382400	101382400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TCEAL2-130	NM_080390	exon3	c.G598T	p.D200Y	TTACAGGACCCCT	.	233	99	106	0	.	0	0	0	0	0
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107812000	107812000	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL4A5-133	NM_000495	exon6	c.C333T	p.G111G	GCCAGGCCACGAT	.	387	194	212	0	.	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145346	exon1	c.G1192A	p.D398N	TCGCCCGACGCCC	.	423	266	55	0	G|0.483;A|0.517	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu;ucsc.edu	37	X	114425210	114425210	+	Silent	SNP	G	G	A	rs12399213		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145346	exon1	c.G1206A	p.G402G	CAGCGGGGGCCGC	.	367	157	71	0	G|0.607;A|0.393	0	0	0	0	0
SLC6A14	11254	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115582608	115582608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC6A14-133	NM_007231	exon8	c.T932C	p.V311A	TATAGGTATGGAA	.	87	39	57	1	.	0	0	0	0	0
RPL39	6170	broad.mit.edu	37	X	118923904	118923904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL39-130	NM_001000	exon2	c.A74T	p.K25I	ATCCACTGGGGAA	.	111	5	47	0	.	2280	2278	0	2	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129190051	129190051	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCORL1-294	NM_021946	exon12	c.C5076T	p.Y1692Y	GCGGTACGAGCCA	.	199	82	121	0	.	3	1	2	0	0
MAMLD1	10046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149639048	149639048	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAMLD1-130	NM_005491	exon3	c.C1203T	p.P401P	GGGGCCCGCCATG	.	191	83	131	1	.	23	23	0	0	0
HAUS7	55559	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	152735950	152735950	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HAUS7-90	NM_017518	exon1	c.C96T	p.S32S	CACGCTGCTGTCG	.	338	151	177	1	.	24	24	0	0	0
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153588004	153588004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLNA-599	NM_001456	exon24	c.C3990T	p.S1330S	GTCCACGGAGTGC	.	133	71	85	0	.	0	0	0	0	0
GPT2	84706	broad.mit.edu	37	16	46934689	46934690	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPT2-92	NM_133443	exon4	c.429_430insG	p.G143fs	TTGTGGCGGGAAC	.	166	9	105	0	.	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707883	46707884	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145051	exon2	c.457_458insGG	p.Q153fs	CTGCAGCAAGAGG	.	142	0	130	0	.	0	0	0	0	0