Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11008485	11008485	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C1orf127-91	NM_001170754	exon12	c.G1707T	p.G569G	CACATCCCCGCTT	.	97	80	119	0	.	2	2	0	0	0
VWA5B1	127731	broad.mit.edu	37	1	20669623	20669623	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001039500	exon16	c.A2363C	p.D788A	ACTGGGACCCCCC	.	124	26	72	7	.	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0
SUCO	51430	ucsc.edu	37	1	172579236	172579236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_014283	exon24	c.C3602T	p.A1201V	AGAGGGCTTTAAA	.	91	1	113	0	.	30	25	5	0	0
LBR	3930	broad.mit.edu	37	1	225600346	225600346	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LBR-228	NM_194442	exon8	c.A894T	p.G298G	ATAGAATCCTTTA	.	90	15	77	10	.	0	0	0	0	0
EGLN1	54583	hgsc.bcm.edu	37	1	231557164	231557164	+	Missense_Mutation	SNP	C	C	G	rs61750991		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EGLN1-226	NM_022051	exon1	c.G471C	p.Q157H	CTTCTCCTGGAAC	.	26	24	2	0	C|0.988;G|0.012	2	0	2	0	0
CEP170	9859	broad.mit.edu	37	1	243333027	243333027	+	Silent	SNP	A	A	G	rs34466343	bycluster	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CEP170-93	NM_014812	exon12	c.T1746C	p.R582R	AACCCAACGTTTG	.	407	9	534	1	.	1	1	0	0	0
OR2M5	127059	ucsc.edu	37	1	248309020	248309020	+	Missense_Mutation	SNP	G	G	A	rs139290187	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	OR2M5-71	NM_001004690	exon1	c.G571A	p.D191N	TGCAATGACACAT	.	59	6	276	1	G|0.999;A|0.001	0	0	0	0	0
FAM208B	54906	bcgsc.ca	37	10	5799613	5799613	+	Missense_Mutation	SNP	A	A	G	rs2275774	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_017782	exon17	c.A6863G	p.K2288R	ATGACAAGATACT	.	149	6	158	2	A|0.887;G|0.113	18	18	0	0	0
SFTPD	6441	broad.mit.edu;bcgsc.ca	37	10	81706389	81706389	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SFTPD-91	NM_003019	exon2	c.G27T	p.L9L	CAGGACCAGTGCA	.	151	7	161	0	.	0	0	0	0	0
ABCC2	1244	broad.mit.edu	37	10	101594155	101594155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ABCC2-91	NM_000392	exon24	c.G3277A	p.D1093N	GTGGATGACACCC	.	146	5	191	0	.	0	0	0	0	0
PLEKHS1	79949	bcgsc.ca	37	10	115526177	115526177	+	Silent	SNP	A	A	G	rs10885500	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_024889	exon3	c.A36G	p.Q12Q	CAAACAATTTACA	.	79	4	121	1	A|0.729;G|0.271	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	79	47	28	0	C|1.000;|0.000	0	0	0	0	0
KCNJ11	3767	bcgsc.ca	37	11	17408831	17408831	+	Missense_Mutation	SNP	G	G	C	rs1800467	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KCNJ11-91	NM_000525	exon1	c.C808G	p.L270V	GTGCCAGGTCGTA	.	175	6	192	2	G|0.734;C|0.266	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	6	6	0	0	G|0.449;A|0.551	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64573817	64573817	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MEN1-3017	NM_130800	exon7	c.C951G	p.Y317X	CCGATAGTAGGTC	.	272	230	340	1	.	4	0	4	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0
TMPRSS12	283471	bcgsc.ca	37	12	51237684	51237684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182559	exon2	c.G247A	p.E83K	GGCACCGAAGCAC	.	134	5	93	1	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	4	0	0	G|0.588;C|0.412	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	16	14	0	0	.	0	0	0	0	0
SETDB2	83852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50050649	50050649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SETDB2-91	NM_031915	exon7	c.A379G	p.K127E	GAAGATAAAGTTG	.	120	42	84	1	.	8	7	1	0	0
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	29237769	29237769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FOXG1-660	NM_005249	exon1	c.G1284A	p.S428S	GACTTCGCAGAGC	.	116	15	94	0	.	0	0	0	0	0
CCDC85C	317762	hgsc.bcm.edu	37	14	100069576	100069576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001144995	exon1	c.G721A	p.G241R	TGGCTCCTGCCTT	.	12	12	0	0	.	1	0	1	0	0
JAG2	3714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105622156	105622156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	JAG2-846	NM_145159	exon4	c.G646T	p.D216Y	AAAAGTCGTTGCG	.	432	123	123	1	.	3	3	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	9	9	0	0	A|0.226;C|0.774	4	0	4	0	0
DAPK2	23604	broad.mit.edu	37	15	64275869	64275869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DAPK2-333	NM_014326	exon3	c.C177A	p.S59R	CGCCCGGCTCTGC	.	167	11	47	1	.	7	7	0	0	0
LCTL	197021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	66850065	66850065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LCTL-92	NM_207338	exon8	c.A917G	p.Y306C	CCAATGTAGTCCT	.	120	7	105	0	.	0	0	0	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79059160	79059160	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ADAMTS7-226	NM_014272	exon19	c.A3093C	p.S1031S	GGCGGGTGAAGGG	.	89	30	17	2	.	30	24	6	0	0
PLIN1	5346	hgsc.bcm.edu	37	15	90209135	90209135	+	Silent	SNP	G	G	A	rs8179074	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLIN1-91	NM_001145311	exon9	c.C1248T	p.F416F	GTCCCGGAATTCG	.	8	6	0	0	G|0.976;A|0.024	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C	rs190057031		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SMG1-1160	NM_015092	exon1	c.A34G	p.S12G	CGCCGCTGCTCAG	.	70	26	3	0	T|0.974;C|0.026	4	1	3	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	6	4	2	0	C|0.218;G|0.782	1	1	0	0	0
KAT8	84148	hgsc.bcm.edu	37	16	31129108	31129108	+	Missense_Mutation	SNP	C	C	G	rs201871085		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182958	exon1	c.C106G	p.P36A	ACCGCCCCATCCC	.	30	11	1	0	C|0.988;G|0.012	11	8	3	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31475864	31475864	+	Missense_Mutation	SNP	C	C	T	rs142376949		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ARMC5-24	NM_024742	exon4	c.C1520T	p.P507L	GCACTCCGGGCCG	.	13	6	0	0	C|0.991;T|0.009	11	3	8	0	0
CMTM1	113540	broad.mit.edu	37	16	66600431	66600431	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CMTM1-90	NM_181271	exon1	c.C15T	p.H5H	TGAACACGCCAAA	.	61	29	36	1	.	3	2	1	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	28	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	27	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	15	13	0	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C16orf3-90	NM_001214	exon1	c.G193A	p.G65S	GGCAGCCTACGGG	.	185	11	81	1	C|0.500;T|0.500	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	rs77382359		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	155	14	62	0	C|0.500;T|0.500	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3627456	3627456	+	Missense_Mutation	SNP	T	T	A	rs11653889	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GSG2-297	NM_031965	exon1	c.T227A	p.V76E	GCCCGGTGAGGCG	.	16	13	1	0	T|0.995;A|0.005	1	0	1	0	0
ENO3	2027	bcgsc.ca	37	17	4856580	4856580	+	Missense_Mutation	SNP	T	T	C	rs238239	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ENO3-227	NM_001976	exon5	c.T254C	p.V85A	GCGTTGTGGATCA	.	179	10	199	2	T|0.602;C|0.398	1	1	0	0	0
NLGN2	57555	hgsc.bcm.edu	37	17	7320874	7320874	+	Missense_Mutation	SNP	C	C	T	rs62061174		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NLGN2-90	NM_020795	exon7	c.C2264T	p.A755V	TCGGGGCGGACCC	.	11	9	0	0	C|0.986;T|0.014	1	0	1	0	0
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	56	9	11	0	.	25	24	1	0	0
KRTAP16-1	100505753	bcgsc.ca	37	17	39464736	39464736	+	Missense_Mutation	SNP	C	C	G	rs2074284	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001146182	exon1	c.G770C	p.S257T	GAGCAACTTGGCT	.	205	7	260	1	C|0.432;G|0.568	0	0	0	0	0
G6PC	2538	hgsc.bcm.edu;bcgsc.ca	37	17	41063167	41063167	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	G6PC-292	NM_000151	exon5	c.C798T	p.G266G	CCTGGGCACGCTC	.	148	8	156	0	.	0	0	0	0	0
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45916995	45916995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SCRN2-91	NM_138355	exon4	c.G371A	p.R124Q	CTGCTCCGTTCCA	.	123	111	142	1	.	4	0	4	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	4	4	0	0	C|0.850;T|0.150	0	0	0	0	0
TGIF1	7050	broad.mit.edu	37	18	3452223	3452223	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	TGIF1-227	NM_170695	exon1	c.246delT	p.P82fs	CCCCCCTCCTCCA	.	15	7	5	0	.	0	0	0	0	0
ARHGAP28	79822	bcgsc.ca	37	18	6890434	6890434	+	Silent	SNP	A	A	G	rs1116757	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ARHGAP28-91	NM_001010000	exon13	c.A1263G	p.P421P	GGTTCCATCTTTC	.	174	8	242	3	A|0.426;G|0.574	0	0	0	0	0
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29102113	29102113	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSG2-563	NM_001943	exon6	c.C591G	p.S197S	AATTTCCTATAGA	.	83	69	148	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	12	8	0	0	C|0.766;T|0.234	8	6	2	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	5	5	0	0	C|0.617;T|0.383	27	0	27	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	11	11	0	0	A|0.873;G|0.127	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	4	4	0	0	C|0.804;T|0.196	15	0	15	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	12	12	0	0	C|0.254;G|0.746	0	0	0	0	0
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	48525476	48525476	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ELSPBP1-90	NM_022142	exon6	c.T564C	p.Y188Y	CAACTATAAAAAC	.	305	22	166	0	.	6	6	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	6	6	0	0	A|0.464;G|0.536	2	0	2	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	150	13	78	0	A|0.998;G|0.002	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	22	22	0	0	T|0.228;C|0.772	1	0	1	0	0
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53058713	53058713	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001039886	exon5	c.A2544G	p.K848K	TTACAAATGTGAA	.	108	39	52	0	.	4	4	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	10	10	0	0	.	0	0	0	0	0
SNTG2	54221	bcgsc.ca	37	2	1271230	1271230	+	Missense_Mutation	SNP	A	A	G	rs13023962	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SNTG2-136	NM_018968	exon14	c.A1171G	p.I391V	TTCAGCATCGTGG	.	225	7	182	0	A|0.705;G|0.295	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	4	4	0	0	G|0.301;C|0.699	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	83	24	34	3	.	1	1	0	0	0
CXCR4	7852	broad.mit.edu	37	2	136872768	136872768	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CXCR4-1082	NM_001008540	exon1	c.742delC	p.L248fs	GGATGAGGATGAC	.	188	8	208	0	.	0	0	0	0	0
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	160994644	160994644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITGB6-227	NM_000888	exon9	c.G1174A	p.A392T	AGATGGCTGTAAA	.	175	15	221	0	.	0	0	0	0	0
SCRN3	79634	bcgsc.ca	37	2	175263063	175263063	+	Missense_Mutation	SNP	G	G	A	rs10497410	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SCRN3-91	NM_024583	exon2	c.G52A	p.D18N	ACAGTCGATAACA	.	40	4	51	0	G|0.866;A|0.134	5	5	0	0	0
PDE11A	50940	bcgsc.ca	37	2	178762824	178762824	+	Silent	SNP	T	T	C	rs71423514	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PDE11A-93	NM_016953	exon4	c.A1263G	p.E421E	ACAGCGTTCACAT	.	76	5	77	0	T|0.895;C|0.105	0	0	0	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225702542	225702542	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DOCK10-92	NM_014689	exon25	c.G2787C	p.L929L	GTCGGTCAGAACC	.	37	24	37	0	.	0	0	0	0	0
AQP12B	653437	ucsc.edu	37	2	241622195	241622195	+	Silent	SNP	T	T	C	rs184458523	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001102467	exon1	c.A60G	p.A20A	CCTGGCTGCCTCA	.	80	76	63	6	T|0.907;C|0.093	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	.	.	.	.	TCTCCTGCTTAGA	.	69	5	80	1	G|0.994;C|0.006	0	0	0	0	0
CNBD2	140894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34618419	34618419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_080834	exon12	c.C1568T	p.P523L	ACAACCCTAAGTC	.	200	21	255	0	.	1	1	0	0	0
DIDO1	11083	hgsc.bcm.edu	37	20	61512424	61512424	+	Silent	SNP	C	C	T	rs146466196	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DIDO1-96	NM_001193369	exon16	c.G4884A	p.G1628G	CTCGGACCCCGCT	.	8	7	2	0	C|0.981;T|0.019	2	0	2	0	0
RFPL1	5988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29837551	29837551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RFPL1-90	NM_021026	exon2	c.G394C	p.D132H	GATGCCGACACAG	.	188	133	173	1	.	2	1	1	0	0
IL17RC	84818	hgsc.bcm.edu	37	3	9975245	9975256	+	In_Frame_Del	DEL	GGCGCGGGACCT	GGCGCGGGACCT	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	GGCGCGGGACCT	GGCGCGGGACCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	IL17RC-92	NM_153461	exon19	c.2344_2355del	p.782_785del	GGACCAGGCGCGG	.	16	15	3	0	.	0	0	0	0	0
FANCD2	2177	ucsc.edu	37	3	10091153	10091153	+	Silent	SNP	C	C	T	rs6785756	bycluster;byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FANCD2-229	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT	.	69	54	133	28	C|0.429;T|0.571	1	0	1	0	0
P4HTM	54681	broad.mit.edu;bcgsc.ca	37	3	49044142	49044142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	P4HTM-205	NM_177938	exon9	c.C1494G	p.D498E	AGACGACTACTCG	.	261	9	275	0	.	127	123	4	0	0
RBM6	10180	broad.mit.edu	37	3	50103899	50103899	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RBM6-280	NM_005777	exon17	c.T2907C	p.V969V	AGAAGTTCTGATC	.	56	4	61	0	.	37	33	4	0	0
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52819196	52819196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITIH1-93	NM_002215	exon12	c.T1544C	p.I515T	GGCGCATTGCTGA	.	131	117	157	1	.	0	0	0	0	0
NAALADL2	254827	bcgsc.ca	37	3	174951756	174951756	+	Missense_Mutation	SNP	T	T	C	rs4371530	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NAALADL2-47	NM_207015	exon3	c.T581C	p.M194T	ATGACATGGAAAT	.	72	6	78	0	T|0.343;C|0.657	0	0	0	0	0
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180685937	180685937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FXR1-153	NM_001013438	exon14	c.C1297T	p.R433X	GACAGCCGACATC	.	199	173	203	0	.	12	1	11	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	12	7	0	0	G|0.957;C|0.043	3	2	1	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	9	9	0	0	A|0.036;G|0.964	2	0	2	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583231	8583231	+	Silent	SNP	C	C	A	rs61741008	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	15	10	0	0	C|0.992;A|0.008	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	18	18	0	0	G|0.025;C|0.975	0	0	0	0	0
PROL1	58503	broad.mit.edu;bcgsc.ca	37	4	71275326	71275326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PROL1-135	NM_021225	exon3	c.G281T	p.R94I	CTATTAGACAACC	.	217	9	159	0	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	488	0	354	0	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537081	88537081	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSPP-90	NM_014208	exon5	c.C3267T	p.D1089D	CAGTGACAGCAGC	.	427	144	332	2	.	0	0	0	0	0
MAML3	55534	broad.mit.edu	37	4	141074334	141074334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAML3-455	NM_018717	exon1	c.G148A	p.A50T	CGGCTGCCGGGTG	.	46	4	31	0	.	0	0	0	0	0
HEXB	3074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	73981246	73981246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HEXB-91	NM_000521	exon1	c.C161T	p.P54L	CGGGGCCGGCGCT	.	42	19	11	0	.	32	24	8	0	0
DUSP1	1843	hgsc.bcm.edu	37	5	172197790	172197790	+	Missense_Mutation	SNP	C	C	T	rs34013988	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DUSP1-659	NM_004417	exon1	c.G166A	p.A56T	CCTTGGCCCGGCG	.	24	10	0	0	C|0.976;T|0.024	46	31	15	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	4	4	0	0	A|0.006;G|0.994	3	0	3	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	5	5	0	0	G|0.000;C|1.000	2	0	2	0	0
BLOC1S5	63915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	8041503	8041503	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001199322	exon5	c.4-2A>T	.	TTTTCCTATTAAA	.	32	21	22	0	.	0	0	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	4	4	0	0	C|0.862;A|0.138	0	0	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324643	31324643	+	Silent	SNP	G	G	C	rs1050517	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HLA-B-90	NM_005514	exon2	c.C165G	p.T55T	GAACTGGGTGTCG	.	31	11	64	2	G|0.419;C|0.581	27	27	0	0	0
MICA	100507436	bcgsc.ca	37	6	31378977	31378977	+	Missense_Mutation	SNP	G	G	A	rs1051792	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001177519	exon3	c.G454A	p.V152M	TGGACAGTGCCCC	.	206	9	218	3	G|0.653;A|0.347	50	50	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32628022	32628022	+	Silent	SNP	A	A	G	rs1140347	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HLA-DQB1-22	NM_001243961	exon6	c.T801C	p.L267L	GTGCAGAAGCCCT	.	19	6	142	2	A|0.440;G|0.560	1	1	0	0	0
PNPLA1	285848	bcgsc.ca	37	6	36269725	36269725	+	Missense_Mutation	SNP	A	A	G	rs34598813	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PNPLA1-137	NM_001145717	exon6	c.A863G	p.E288G	GCAATGAGTGCCC	.	92	6	116	0	A|0.923;G|0.077	2	2	0	0	0
OSTM1	28962	broad.mit.edu	37	6	108395512	108395512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	OSTM1-68	NM_014028	exon1	c.G344T	p.C115F	GGGTAGCAGGTCT	.	101	9	59	1	.	10	10	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	13	9	4	0	T|0.654;G|0.346	0	0	0	0	0
AP5Z1	9907	broad.mit.edu	37	7	4827402	4827402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_014855	exon11	c.G1449T	p.Q483H	CCTGCAGCTCAGG	.	117	11	10	0	.	0	0	0	0	0
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	53103984	53103984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182595	exon1	c.G620A	p.R207K	GTGGCAGGCGGAA	.	127	56	65	0	.	0	0	0	0	0
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu	37	7	73011760	73011760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MLXIPL-91	NM_032954	exon9	c.C1355A	p.P452H	GCTGCAGGAGCAG	.	27	6	12	0	.	14	6	8	0	0
MBLAC1	255374	hgsc.bcm.edu	37	7	99725210	99725210	+	Silent	SNP	G	G	T	rs142426754		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MBLAC1-135	NM_203397	exon2	c.G192T	p.G64G	GCGCGGGAGTGGC	.	11	7	0	0	G|0.976;T|0.024	1	0	1	0	0
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128496863	128496863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FLNC-141	NM_001458	exon45	c.C7449G	p.N2483K	GTTCAACGGTGCC	.	303	123	217	0	.	1	1	0	0	0
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142651025	142651025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KEL-93	NM_000420	exon9	c.G943T	p.D315Y	ACCAGTCGATGGC	.	114	50	74	0	.	0	0	0	0	0
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_020322	exon1	c.C108A	p.G36G	GCCAGGCAGCCTG	.	126	15	20	0	.	2	2	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	9	9	0	0	T|0.935;A|0.065	0	0	0	0	0
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	81399960	81399962	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZBTB10-522	NM_023929	exon1	c.915_917del	p.305_306del	GAAAACCCTCCTC	.	68	33	39	0	.	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940450	144940450	+	Silent	SNP	G	G	C	rs56258403		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EPPK1-25	NM_031308	exon1	c.C6972G	p.A2324A	CTGCATGGCCTGG	.	427	18	123	1	.	1	1	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940462	144940462	+	Silent	SNP	G	G	A	rs56146920	bycluster;byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EPPK1-25	NM_031308	exon1	c.C6960T	p.S2320S	GAAGAGGGAGATC	.	420	14	124	2	G|0.500;A|0.500	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940474	144940474	+	Silent	SNP	C	C	T	rs56015972	bycluster	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EPPK1-25	NM_031308	exon1	c.G6948A	p.G2316G	CTGCTGCCCGGTG	.	398	12	115	1	C|0.500;T|0.500	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	28	10	0	0	A|0.536;G|0.464	50	30	20	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990784	144990784	+	Missense_Mutation	SNP	G	G	A	rs113513807	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon32	c.C13616T	p.T4539M	CCCGGCGTGTCGG	.	35	15	0	0	A|0.013;C|0.000;G|0.987	72	42	30	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	6	5	0	0	C|0.731;T|0.269	1	1	0	0	0
CPSF1	29894	broad.mit.edu	37	8	145623200	145623200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CPSF1-91	NM_013291	exon20	c.G2042A	p.R681H	GCCAGGCGGTGGT	.	85	5	28	2	.	22	22	0	0	0
KIF12	113220	broad.mit.edu	37	9	116854241	116854241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KIF12-90	NM_138424	exon16	c.C1442A	p.A481D	CTGAGGGCCTCCA	.	102	10	83	1	.	0	0	0	0	0
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs35523939	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SRPX-130	NM_001170751	exon1	c.68_70del	p.23_24del	GGACGCGCAGCAG	.	56	13	6	0	-|1.000;|0.000	0	0	0	0	0
ZNF157	7712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47230123	47230123	+	Missense_Mutation	SNP	C	C	A	rs186352953	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZNF157-130	NM_003446	exon1	c.C56A	p.P19H	GAGAACCTGGCAG	.	375	180	251	0	C|1.000;T|0.000	0	0	0	0	0
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151900366	151900366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAGEA12-131	NM_005367	exon2	c.C435T	p.D145D	AAAGAAGTCCTGG	.	539	39	680	0	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	15	15	0	0	-|0.389;CGC|0.611	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	192	7	17	0	.	0	0	0	0	0