Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	31	0	31	0	0
XKR8	55113	hgsc.bcm.edu	37	1	28286666	28286666	+	Missense_Mutation	SNP	C	C	T	rs201643190		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	XKR8-90	NM_018053	exon1	c.C86T	p.T29I	TGGGCACCGACCT	.	5	5	0	0	.	1	0	1	0	0
ZZZ3	26009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	78098574	78098574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZZZ3-157	NM_015534	exon5	c.G466T	p.D156Y	GAAAATCTGCATC	.	159	14	120	0	.	4	4	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0
KLHDC8A	55220	bcgsc.ca	37	1	205306590	205306590	+	Silent	SNP	G	G	A	rs3210952	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	KLHDC8A-91	NM_001271864	exon7	c.C990T	p.A330A	TCCCACGGCGAGG	.	117	5	98	1	G|0.841;A|0.159	23	23	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208202216	208202216	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PLXNA2-92	NM_025179	exon30	c.C5397G	p.L1799L	GGCATAGAGCAGC	.	171	152	136	0	.	1	1	0	0	0
GPR158	57512	bcgsc.ca	37	10	25701341	25701341	+	Missense_Mutation	SNP	C	C	G	rs2480345	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GPR158-141	NM_020752	exon4	c.C1274G	p.A425G	TCCAAGCCCTGTG	.	151	6	141	0	C|0.433;G|0.567	0	0	0	0	0
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	43698838	43698838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RASGEF1A-227	NM_145313	exon3	c.T229A	p.S77T	CCCGGGAGCTCAG	.	285	35	195	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	113	82	180	7	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	96	45	222	4	C|1.000;|0.000	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	INPPL1-660	NM_001567	exon27	c.C3554A	p.A1185D	CTTAGGCTCCGTG	.	48	6	10	0	.	1	1	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_138706	exon4	c.989_1006del	p.330_336del	GCATCCTGGCCCT	.	18	0	5	0	.	0	0	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAML2-850	NM_032427	exon2	c.A1821G	p.Q607Q	CTGCTGTTGCTGC	.	151	6	134	0	C|1.000;|0.000	5076	48	5021	2	5
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	182	12	99	0	G|0.999;A|0.001	134	134	0	0	0
C1QL4	338761	hgsc.bcm.edu	37	12	49730135	49730135	+	Silent	SNP	G	G	C	rs146137821		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C1QL4-90	NM_001008223	exon1	c.C126G	p.P42P	GCCGTCGGGACCA	.	6	4	0	0	G|0.904;C|0.096	0	0	0	0	0
HOXC9	3225	hgsc.bcm.edu	37	12	54394284	54394284	+	Silent	SNP	C	C	T	rs34079606	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HOXC9-155	NM_006897	exon1	c.C312T	p.V104V	CGCCGTCTCCTTC	.	11	9	0	0	C|0.982;T|0.018	0	0	0	0	0
HSP90B1	7184	broad.mit.edu	37	12	104332202	104332204	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HSP90B1-93	NM_003299	exon7	c.940_942del	p.314_314del	GTAGAGGAAGAAG	.	228	8	135	0	.	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	6	6	0	0	C|0.429;T|0.571	141	131	10	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	11	11	0	0	C|0.372;T|0.628	1	0	1	0	0
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59798591	59798591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	DAAM1-227	NM_001270520	exon15	c.G1921T	p.D641Y	ATTCTAGATCTTG	.	100	16	82	0	.	3	3	0	0	0
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94752476	94752476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SERPINA10-228	NM_001100607	exon4	c.C1112A	p.S371X	GTAGCTGAGAGTT	.	114	37	108	0	.	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	7	4	0	0	T|0.478;C|0.522	1	1	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	0	0	0	0	0
IFT140	9742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1642210	1642210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IFT140-95	NM_014714	exon6	c.G601T	p.E201X	GCCCCTCGTGAGA	.	162	53	135	1	.	2	1	1	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049849	2049849	+	Silent	SNP	T	T	C	rs12149722		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF598-432	NM_178167	exon11	c.A1701G	p.T567T	GGGGCGTGTGCTC	.	12	8	1	0	T|0.897;C|0.103	20	7	13	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	18	15	0	0	G|0.570;T|0.430	0	0	0	0	0
DNAH3	55567	broad.mit.edu	37	16	21011788	21011790	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	DNAH3-167	NM_017539	exon43	c.6177_6179del	p.2059_2060del	GTTTTCAAGAAGA	.	256	12	205	0	.	0	0	0	0	0
IL4R	3566	broad.mit.edu	37	16	27370278	27370278	+	Missense_Mutation	SNP	G	G	T	rs55988941	byfrequency;alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IL4R-227	NM_000418	exon9	c.G812T	p.R271L	CAGCCCGCAGCCG	.	92	4	79	0	G|0.999;A|0.001	5	5	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	0	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	17	17	0	0	T|0.657;C|0.343	0	0	0	0	0
C17orf97	400566	broad.mit.edu	37	17	263687	263687	+	Silent	SNP	C	C	T	rs112578606		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C17orf97-91	NM_001013672	exon2	c.C1053T	p.A351A	CGAGGCCCTCAAG	.	135	8	105	0	C|0.500;T|0.500	46	40	6	0	0
GPS2	2874	bcgsc.ca	37	17	7217463	7217463	+	Silent	SNP	T	T	C	rs11541855	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GPS2-93	NM_004489	exon5	c.A333G	p.L111L	TGATGTTAGGGTG	.	146	8	156	1	T|0.476;C|0.524	77	77	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7578378	7578392	+	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TP53-70225	NM_000546	exon5	c.538_552del	p.180_184del	ATCGCTATCTGAG	.	134	93	143	0	.	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29554308	29554317	+	Frame_Shift_Del	DEL	AGGTATGCCC	AGGTATGCCC	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGGTATGCCC	AGGTATGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NF1-3353	NM_000267	exon19	c.2324_2325del	p.775_775del	ACACTGAGGTATG	.	66	38	86	0	.	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	rs201246375		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_031960	exon1	c.C188G	p.T63S	CAGCAGGTGGGCT	.	70	14	62	2	.	0	0	0	0	0
MAP3K3	4215	bcgsc.ca	37	17	61771099	61771099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAP3K3-979	NM_203351	exon17	c.G1936C	p.E646Q	GCTGAGGAGCTGC	.	102	5	80	1	.	4	4	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288631	74288631	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	QRICH2-94	NM_032134	exon4	c.T1679A	p.V560D	TGCTGAACTGCAC	.	416	22	410	0	.	0	0	0	0	0
GAA	2548	bcgsc.ca	37	17	78083791	78083791	+	Silent	SNP	C	C	T	rs1800305	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GAA-91	NM_001079803	exon10	c.C1374T	p.Y458Y	GCCCTACGACGAG	.	153	9	147	1	C|0.902;T|0.098	29	29	0	0	0
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	149	14	47	2	.	0	0	0	0	0
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	43796373	43796373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C18orf25-515	NM_145055	exon2	c.G527A	p.S176N	ATCGGAGCCAAAA	.	168	154	161	1	.	5	1	4	0	0
KIAA1468	57614	broad.mit.edu	37	18	59919898	59919898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	KIAA1468-158	NM_020854	exon12	c.C1735A	p.Q579K	TTCAGGCAAATGA	.	62	5	39	0	.	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	7	7	0	0	C|0.780;G|0.220	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	14	4	0	0	T|0.403;C|0.597	18	18	0	0	0
PTPRS	5802	hgsc.bcm.edu	37	19	5222831	5222831	+	Missense_Mutation	SNP	G	G	A	rs2230610	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PTPRS-357	NM_002850	exon18	c.C2972T	p.A991V	TTCTCCGCGCCCG	.	15	9	0	0	G|0.979;A|0.021	6	4	2	0	0
LPHN1	22859	broad.mit.edu	37	19	14262129	14262129	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	LPHN1-523	NM_001008701	exon24	c.T3981G	p.G1327G	GTCAGCACCCCCG	.	79	28	22	6	.	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	16	10	0	0	C|0.883;G|0.117	7	2	5	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	9	8	0	0	T|0.545;C|0.455	12	0	12	0	0
PPM1N	147699	hgsc.bcm.edu	37	19	46002368	46002368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001080401	exon1	c.C638T	p.A213V	TCCACGCCGCTGG	.	8	6	0	0	.	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184474	48184474	+	Missense_Mutation	SNP	C	C	T	rs3745762		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GLTSCR1-48	NM_015711	exon6	c.C2047T	p.P683S	CAGCCGCCCTCTG	.	10	10	0	0	C|0.684;T|0.316	2	0	2	0	0
MIR520F	574464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54185480	54185480	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	.	.	.	.	TCCTTTTAGAGGG	.	219	138	98	1	.	0	0	0	0	0
RFPL4A	342931	broad.mit.edu	37	19	56274284	56274284	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RFPL4A-68	NM_001145014	exon3	c.607delC	p.P203fs	ACTGTGCCTATGA	.	483	51	286	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	14	13	0	0	.	0	0	0	0	0
ZNF837	116412	hgsc.bcm.edu	37	19	58879118	58879118	+	Missense_Mutation	SNP	G	G	A	rs202005567		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF837-68	NM_138466	exon3	c.C1582T	p.R528C	CGGCGCGGCCCCC	.	34	22	0	0	.	3	2	1	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	5	5	0	0	A|0.003;G|0.997	0	0	0	0	0
NT5C1B	93034	hgsc.bcm.edu	37	2	18766156	18766156	+	Nonsense_Mutation	SNP	G	G	T	rs61742596	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NT5C1B-47	NM_001199087	exon5	c.C578A	p.S193X	TGGAGCGAGGGCT	.	14	13	0	0	G|0.950;T|0.050	0	0	0	0	0
FAM179A	165186	bcgsc.ca	37	2	29226498	29226498	+	Silent	SNP	G	G	A	rs12613325	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	FAM179A-26	NM_199280	exon6	c.G780A	p.P260P	CAGCCCGTTACCT	.	255	9	243	2	G|0.369;A|0.631	0	0	0	0	0
PAIP2B	400961	bcgsc.ca	37	2	71417065	71417065	+	Silent	SNP	G	G	T	rs357777	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PAIP2B-46	NM_020459	exon3	c.C225A	p.P75P	TCGTGAGGGAATA	.	115	6	121	0	G|0.052;T|0.948	5	5	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	136	36	47	5	.	0	0	0	0	0
EPB41L5	57669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	120834600	120834601	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPB41L5-91	NM_020909	exon8	c.559_560del	p.187_187del	TCAGAGTTCAGAT	.	58	56	77	0	.	0	0	0	0	0
AMER3	205147	bcgsc.ca	37	2	131520598	131520598	+	Missense_Mutation	SNP	G	G	A	rs200015684		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_152698	exon2	c.G953A	p.R318H	CAGTGCGTCAGCA	.	172	157	121	4	G|0.999;A|0.000	0	0	0	0	0
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115239	158115239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GALNT5-290	NM_014568	exon1	c.C645G	p.D215E	AAGGGACTTGAAT	.	87	40	56	0	.	0	0	0	0	0
C2orf62	375307	bcgsc.ca	37	2	219221846	219221846	+	Silent	SNP	G	G	A	rs4324314	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C2orf62-68	NM_198559	exon2	c.G54A	p.S18S	GCCCTCGGGTCCG	.	113	6	95	1	G|0.844;A|0.156	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALPPL2-91	NM_031313	exon11	c.C1492A	p.R498S	GCGCCCCGCGCCG	.	13	10	0	0	C|0.901;A|0.099	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	18	17	0	0	.	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	8	8	0	0	G|0.122;C|0.878	2	0	2	0	0
SLC23A2	9962	hgsc.bcm.edu	37	20	4850569	4850569	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SLC23A2-92	NM_203327	exon12	c.1233delC	p.P411fs	GTGGATGGGGGGG	.	358	0	196	0	.	0	0	0	0	0
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42157986	42157986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	L3MBTL1-227	NM_032107	exon9	c.A968G	p.Y323C	CCATGTACTTCAT	.	446	107	177	0	.	1	1	0	0	0
CEBPB	1051	hgsc.bcm.edu;broad.mit.edu	37	20	48807902	48807902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CEBPB-226	NM_005194	exon1	c.332delC	p.S111fs	CCTCCTCCGGGCA	.	53	18	15	0	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	77	14	4	0	.	191	164	26	1	0
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15750609	15750609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HSPA13-226	NM_006948	exon3	c.G491A	p.G164E	GGCATTCCAAGAT	.	73	44	55	0	.	15	8	7	0	0
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24717579	24717579	+	Missense_Mutation	SNP	G	G	T	rs113473482	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SPECC1L-92	NM_001145468	exon4	c.G631T	p.A211S	ATGCGTGCCCAGC	.	57	14	56	0	G|0.500;A|0.500	6	5	1	0	0
EIF4ENIF1	56478	bcgsc.ca	37	22	31838085	31838085	+	Silent	SNP	G	G	A	rs5997988	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EIF4ENIF1-91	NM_019843	exon17	c.C2226T	p.S742S	TACAGAGCTGGAT	.	137	7	109	0	G|0.611;A|0.389	8	8	0	0	0
ACO2	50	bcgsc.ca	37	22	41903813	41903813	+	Silent	SNP	A	A	C	rs137831	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ACO2-290	NM_001098	exon3	c.A192C	p.T64T	GCTGACACTCTCG	.	287	16	262	11	A|0.669;C|0.331	20	20	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C22orf26-90	NM_018280	exon1	c.C83T	p.P28L	GGGTTGGGGGGGG	.	7	7	0	0	A|0.248;C|0.000;G|0.752	0	0	0	0	0
CAND2	23066	bcgsc.ca	37	3	12856856	12856856	+	Missense_Mutation	SNP	A	A	G	rs2305398	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CAND2-72	NM_001162499	exon8	c.A1223G	p.Q408R	AAACACAGCCCCC	.	717	17	673	8	G|0.597;N|0.001	0	0	0	0	0
FAM198A	729085	broad.mit.edu;bcgsc.ca	37	3	43095101	43095101	+	Missense_Mutation	SNP	A	A	G	rs536119	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	FAM198A-68	NM_001129908	exon3	c.A1379G	p.Q460R	AATGCCAGAACCC	.	194	7	139	0	T|0.179;G|0.318	0	0	0	0	0
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44308516	44308516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001145030	exon6	c.G3048A	p.M1016I	CTTTATGGTCGGC	.	61	5	68	0	.	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49723596	49723596	+	Missense_Mutation	SNP	G	G	A	rs200900272		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MST1-278	NM_020998	exon9	c.C1046T	p.P349L	CCGTCGGGGTTCC	.	116	5	66	1	.	7	7	0	0	0
RBM6	10180	bcgsc.ca	37	3	50097113	50097113	+	Missense_Mutation	SNP	A	A	G	rs34707170	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RBM6-280	NM_005777	exon11	c.A2162G	p.N721S	TACAGAACCTTGA	.	174	6	119	0	A|0.998;C|0.000;G|0.001	18	18	0	0	0
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57616477	57616477	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_152678	exon17	c.C1482G	p.T494T	TCTAGAGGTTAGC	.	36	21	61	0	.	6	4	2	0	0
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74385793	74385793	+	Missense_Mutation	SNP	C	C	T	rs187262258		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CNTN3-137	NM_020872	exon11	c.G1381A	p.D461N	CTCCATCGTTTAA	.	78	69	81	0	C|0.999;T|0.000	0	0	0	0	0
VGLL3	389136	broad.mit.edu;bcgsc.ca	37	3	87027942	87027942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	VGLL3-90	NM_016206	exon2	c.C137T	p.A46V	AATACCGCTAACT	.	38	32	50	2	.	0	0	0	0	0
ALG1L	200810	hgsc.bcm.edu	37	3	125648356	125648356	+	Missense_Mutation	SNP	T	T	C	rs3828357	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALG1L-90	NM_001195223	exon7	c.A463G	p.N155D	GCAGGTTCTTCCA	.	8	8	0	0	T|0.677;C|0.323	5	0	5	0	0
IGSF10	285313	broad.mit.edu	37	3	151155638	151155638	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IGSF10-102	NM_178822	exon6	c.C6711A	p.I2237I	ACCATTGATTAAT	.	83	3	37	0	.	0	0	0	0	0
ABCC5	10057	broad.mit.edu	37	3	183665257	183665257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ABCC5-137	NM_005688	exon23	c.3269delT	p.L1090fs	GTAAACAAAAAAA	.	148	7	105	0	.	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880129	197880129	+	Missense_Mutation	SNP	T	T	C	rs28554473		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001145248	exon2	c.T208C	p.W70R	AAGAACTGGCAGC	.	299	19	390	7	.	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880136	197880136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001145248	exon2	c.A215G	p.Q72R	GGCAGCAGCAGCA	.	281	25	398	7	.	0	0	0	0	0
ZNF732	654254	hgsc.bcm.edu	37	4	289888	289888	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF732-22	NM_001137608	exon1	c.C57T	p.C19C	GTCCAGGCATTTC	.	110	6	95	0	.	25	25	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	59	13	4	0	C|0.960;G|0.040	3	1	2	0	0
CRIPAK	285464	ucsc.edu	37	4	1388850	1388850	+	Missense_Mutation	SNP	C	C	T	rs78729943	bycluster;byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.C551T	p.T184M	TGCCAACGTGGAG	.	157	36	33	0	C|0.500;T|0.500	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu;ucsc.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	145	30	37	0	A|0.994;C|0.006	12	1	11	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	9	9	0	0	T|0.691;C|0.309	0	0	0	0	0
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14387852	14387852	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TRIO-562	NM_007118	exon23	c.C3777T	p.L1259L	AAGTCTCCAGCTA	.	126	48	119	0	.	0	0	0	0	0
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121758644	121758644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SNCAIP-92	NM_005460	exon4	c.G212T	p.S71I	TGTACAGTAAGTT	.	259	117	255	0	.	0	0	0	0	0
GNPDA1	10007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141382735	141382735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GNPDA1-90	NM_005471	exon6	c.C687G	p.F229L	CTGCTGGAAGGCA	.	184	92	176	0	.	13	4	9	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	6	6	0	0	G|0.000;C|1.000	3	0	3	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324595	31324604	+	Frame_Shift_Del	DEL	CGGCTCCTCT	CGGCTCCTCT	-	rs151341122	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	CGGCTCCTCT	CGGCTCCTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HLA-B-90	NM_005514	exon2	c.204_213del	p.68_71del	CGCCCGCGGCTCC	.	97	0	22	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	10	0	0	C|0.329;G|0.671	25	0	25	0	0
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55214349	55214349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EGFR-44910	NM_005228	exon4	c.G475A	p.V159M	TGCAACGTGGAGA	.	222	16	116	0	.	1	1	0	0	0
SGCE	8910	hgsc.bcm.edu	37	7	94227276	94227276	+	Missense_Mutation	SNP	T	T	G	rs10247562	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SGCE-91	NM_001099401	exon10	c.A1294C	p.S432R	GATCGCTCCATTG	.	5	5	0	0	T|0.255;G|0.745	380	16	247	117	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	15	12	2	0	C|0.663;G|0.337	0	0	0	0	0
NKX3-1	4824	hgsc.bcm.edu	37	8	23540249	23540249	+	Missense_Mutation	SNP	G	G	A	rs2228013	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NKX3-1-90	NM_006167	exon1	c.C154T	p.R52C	GGTCGCGCTGTCT	.	12	8	0	0	G|0.977;A|0.023	1	1	0	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53044607	53044607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ST18-95	NM_014682	exon22	c.G2577C	p.W859C	CAGTTTCCAGGAG	.	330	170	179	0	.	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	27	5	2	0	T|0.642;G|0.358	0	0	0	0	0
STAU2	27067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74464276	74464276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	STAU2-90	NM_001164380	exon13	c.G1501C	p.E501Q	AATATTCCAGTTG	.	257	48	160	1	.	18	16	2	0	0
EPPK1	83481	broad.mit.edu;bcgsc.ca	37	8	144940435	144940435	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPPK1-25	NM_031308	exon1	c.C6987T	p.L2329L	GACGATGAGGTCC	.	977	64	204	1	.	1	1	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940706	144940706	+	Missense_Mutation	SNP	C	C	T	rs112377501	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPPK1-25	NM_031308	exon1	c.G6716A	p.R2239H	TCCTGGCGGCCGG	.	121	8	6	0	C|0.993;T|0.007	2	2	0	0	0
PALM2-AKAP2	445815	bcgsc.ca	37	9	112898576	112898576	+	Missense_Mutation	SNP	C	C	T	rs151065500	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PALM2-AKAP2-475	NM_007203	exon8	c.C752T	p.P251L	CTACCCCACATCC	.	209	7	152	2	C|0.993;T|0.007	1	1	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113173641	113173641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SVEP1-75	NM_153366	exon37	c.T6350A	p.V2117E	TTCAGTACAAAGC	.	101	34	66	0	.	2	1	1	0	0
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116154411	116154411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALAD-90	NM_000031	exon3	c.C152T	p.P51L	ACTCCTGGGAGGC	.	94	12	82	0	.	23	16	7	0	0
ABCA2	20	ucsc.edu;bcgsc.ca	37	9	139918597	139918597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ABCA2-90	NM_212533	exon2	c.A248G	p.E83G	TCACCTTCCTTCA	.	357	329	196	3	.	0	0	0	0	0
MAGEB16	139604	bcgsc.ca	37	X	35821127	35821127	+	Nonsense_Mutation	SNP	C	C	T	rs4829392	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAGEB16-66	NM_001099921	exon2	c.C814T	p.R272X	CCTGCACGATATG	.	210	7	175	2	C|0.355;0|0.042	0	0	0	0	0
CT45A5	441521	bcgsc.ca	37	X	134948034	134948034	+	Silent	SNP	A	A	G	rs2034920	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CT45A5-44	NM_001007551	exon3	c.T291C	p.N97N	GGTAACATTTCCT	.	105	8	99	0	0|0.004;T|0.049	0	0	0	0	0
ARHGAP4	393	bcgsc.ca	37	X	153176254	153176254	+	Silent	SNP	A	A	G	rs2070097	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ARHGAP4-227	NM_001164741	exon16	c.T1836C	p.H612H	CAGGTCATGGGCA	.	36	4	40	0	A|0.354;G|0.646	16	16	0	0	0
PLXNA3	55558	bcgsc.ca	37	X	153694334	153694334	+	Missense_Mutation	SNP	C	C	G	rs5945430	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PLXNA3-132	NM_017514	exon14	c.C2589G	p.D863E	GGGTGACAACCTG	.	196	6	164	0	C|0.625;G|0.375	8	8	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	106	10	30	0	.	0	0	0	0	0
NKD2	85409	hgsc.bcm.edu	37	5	1033568	1033569	+	Frame_Shift_Ins	INS	-	-	CCGCGAGGGC	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NKD2-226	NM_001271082	exon5	c.284_285insCCGCGAGGGC	p.N95fs	CAGCAAACCGCGA	.	287	16	65	0	.	0	0	0	0	0
TCEAL6	158931	broad.mit.edu	37	X	101396073	101396074	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TCEAL6-91	NM_001006938	exon3	c.231_232insA	p.K77fs	TTGTGGCTTGCCC	.	143	8	87	0	.	0	0	0	0	0