Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TRNP1	388610	hgsc.bcm.edu	37	1	27320356	27320356	+	Missense_Mutation	SNP	T	T	C	rs6689941		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TRNP1-44	NM_001013642	exon1	c.T79C	p.W27R	CCGCCCTGGGATC	.	4	4	0	0	T|0.030;C|0.970	0	0	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057031	44057031	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRF-232	NM_002840	exon9	c.A1338G	p.G446G	GCGGGGATACCGC	.	72	18	46	0	.	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	10	8	1	0	T|0.859;C|0.141	0	0	0	0	0
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65321267	65321267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	JAK1-3900	NM_002227	exon11	c.C1573T	p.H525Y	TGAGGTGGCTCAT	.	107	15	142	0	.	3	3	0	0	0
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OVGP1-135	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA	.	35	21	51	1	C|0.500;T|0.500	0	0	0	0	0
KPRP	448834	broad.mit.edu	37	1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KPRP-95	NM_001025231	exon2	c.C1432A	p.P478T	CCAGAGCCAATTC	.	53	4	43	2	.	0	0	0	0	0
F5	2153	broad.mit.edu;bcgsc.ca	37	1	169510485	169510485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	F5-157	NM_000130	exon13	c.C3843A	p.S1281R	TGTATGGCTGAGG	.	318	11	383	1	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	8	8	2	0	T|0.229;C|0.771	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186047340	186047340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	HMCN1-113	NM_031935	exon55	c.G8587A	p.V2863I	TATGATGTCCGTG	.	118	22	116	0	.	0	0	0	0	0
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212560297	212560297	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TMEM206-153	NM_001198862	exon4	c.T462A	p.R154R	TTTCTCACGAAAG	.	167	11	154	0	.	0	0	0	0	0
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244583531	244583531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ADSS-229	NM_001126	exon8	c.G731C	p.G244A	GGTGGTCCATGTA	.	50	14	96	0	.	1	1	0	0	0
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29599974	29599975	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LYZL1-90	NM_032517	exon5	c.571_572del	p.191_191del	AAAGGCTGTGAGG	.	149	28	137	0	.	0	0	0	0	0
LYZL1	84569	hgsc.bcm.edu	37	10	29599976	29599977	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LYZL1-90	NM_032517	exon5	c.573_574del	p.191_192del	AGGCTGTGAGGTT	.	150	0	137	0	.	0	0	0	0	0
SIRT1	23411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69651221	69651221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SIRT1-226	NM_012238	exon4	c.C851T	p.A284V	GCCTTGCTGTAGA	.	119	40	129	0	.	0	0	0	0	0
CYP26C1	340665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94821064	94821064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CYP26C1-90	NM_183374	exon1	c.C44T	p.A15V	GGGCGGCGGGCAC	.	71	20	29	0	.	0	0	0	0	0
CDHR5	53841	bcgsc.ca	37	11	621634	621634	+	Silent	SNP	G	G	A	rs2740373	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDHR5-90	NM_031264	exon5	c.C435T	p.P145P	CGTCTCGGGGATG	.	135	5	131	0	G|0.783;A|0.217	0	0	0	0	0
OR52E2	119678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5080032	5080032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR52E2-71	NM_001005164	exon1	c.C826T	p.L276F	CTAGGAGTATATG	.	140	59	155	0	.	0	0	0	0	0
NAV2	89797	bcgsc.ca	37	11	20067064	20067064	+	Silent	SNP	C	C	T	rs7125647	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	NAV2-96	NM_001244963	exon15	c.C3819T	p.D1273D	AACAGACAAGGAG	.	108	6	104	1	C|0.383;T|0.617	0	0	0	0	0
FOLH1	2346	bcgsc.ca	37	11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	rs199782232		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FOLH1-579	NM_004476	exon7	c.A889G	p.I297V	ATCCAATTGGATG	.	143	8	131	0	.	1	1	0	0	0
OR4A15	81328	bcgsc.ca	37	11	55135435	55135435	+	Missense_Mutation	SNP	C	C	T	rs1425193	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR4A15-70	NM_001005275	exon1	c.C76T	p.P26S	CCAACACCTTCAG	.	126	7	113	0	C|0.778;T|0.222	0	0	0	0	0
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55541619	55541619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR5D13-71	NM_001001967	exon1	c.C706G	p.R236G	AGTGGGCGCCAGA	.	91	15	75	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FAM86C1-90	NM_152563	exon1	c.G89C	p.R30P	CCTTCCGCTGGCA	.	15	11	2	0	G|0.601;C|0.399	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	INPPL1-660	NM_001567	exon27	c.C3554A	p.A1185D	CTTAGGCTCCGTG	.	41	10	17	2	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	18	18	0	0	.	0	0	0	0	0
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52828026	52828026	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KRT75-90	NM_004693	exon1	c.G63A	p.S21S	GATGGCCGAGGTG	.	57	17	35	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	31	13	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	52	25	0	0	C|0.752;T|0.248	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	7	7	0	0	C|0.429;T|0.571	36	34	2	0	0
FAM101A	144347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124798764	124798764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FAM101A-68	NM_181709	exon3	c.C101T	p.S34L	ACGCCTCGGAGAA	.	502	79	231	0	.	0	0	0	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751262	19751262	+	Silent	SNP	G	G	A	rs117337915	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TUBA3C-95	NM_006001	exon4	c.C861T	p.S287S	AGCCACGGACAGC	.	215	25	253	4	G|0.999;A|0.001	0	0	0	0	0
UBL3	5412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30346294	30346294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	UBL3-90	NM_007106	exon3	c.C178A	p.L60I	AAATAAGTCGTAG	.	29	12	71	0	.	0	0	0	0	0
CCDC169-SOHLH2	100526761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36748932	36748932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_001198910	exon12	c.C947T	p.A316V	ACTGAAGCCGCAT	.	68	17	109	0	.	0	0	0	0	0
RTN1	6252	broad.mit.edu;bcgsc.ca	37	14	60194375	60194375	+	Missense_Mutation	SNP	C	C	G	rs1132362	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	RTN1-516	NM_021136	exon3	c.G1027C	p.A343P	ATTCTGCAGCAGA	.	82	4	83	0	C|0.988;G|0.012	0	0	0	0	0
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77723002	77723002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_020431	exon24	c.C2354T	p.A785V	GCTTTGCGAGGGA	.	142	36	132	0	.	0	0	0	0	0
FLRT2	23768	bcgsc.ca	37	14	86089315	86089315	+	Missense_Mutation	SNP	G	G	A	rs17646457	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FLRT2-94	NM_013231	exon2	c.G1457A	p.R486Q	AGCCCCGATCCAC	.	255	8	261	3	G|0.899;A|0.101	0	0	0	0	0
MPI	4351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75185139	75185139	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MPI-92	NM_002435	exon4	c.A483G	p.L161L	CTTTCTAAAGAGT	.	103	33	128	0	.	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2140972	2140972	+	Silent	SNP	G	G	A	rs77634115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PKD1-91	NM_001009944	exon43	c.C11916T	p.R3972R	GAAGCGGCGCGGG	.	22	12	1	0	G|0.989;A|0.011	8	4	4	0	0
AMDHD2	51005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580311	2580311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD2-155	NM_001145815	exon11	c.G1336C	p.E446Q	GTATGGGAGGCAC	.	144	31	62	0	.	13	13	0	0	0
IST1	9798	ucsc.edu	37	16	71956529	71956529	+	Silent	SNP	C	C	T	rs28701631	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_001270976	exon8	c.C744T	p.P248P	CATGCCCATGCCT	.	131	15	86	1	C|0.988;T|0.012	1	1	0	0	0
FA2H	79152	broad.mit.edu;bcgsc.ca	37	16	74752999	74752999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FA2H-90	NM_024306	exon5	c.C673T	p.L225F	TCCAGAGGAATGT	.	170	6	107	0	.	0	0	0	0	0
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83378514	83378514	+	Silent	SNP	G	G	T	rs201452763	alternate_allele	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDH13-67	NM_001220488	exon7	c.G825T	p.P275P	GGGGCCGGTGCCT	.	114	17	69	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	29	0	4	0	.	0	0	0	0	0
DOC2B	8447	broad.mit.edu;bcgsc.ca	37	17	6115	6115	+	Silent	SNP	G	G	C	rs61739713	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_003585	exon6	c.C819G	p.S273S	CTTGAGGGAGATG	.	167	7	133	1	T|0.000;G|0.718;C|0.281	0	0	0	0	0
CTDNEP1	23399	bcgsc.ca	37	17	7149369	7149369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CTDNEP1-91	NM_001143775	exon6	c.C565A	p.P189T	CCCCTGGGGAGTT	.	76	4	99	0	.	26	26	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	12	12	0	0	C|0.808;T|0.192	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10310241	10310241	+	Missense_Mutation	SNP	C	C	T	rs28932773		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MYH8-101	NM_002472	exon18	c.G2021A	p.R674Q	ATACACCGTACGA	.	116	27	139	0	.	0	0	0	0	0
EPN3	55040	broad.mit.edu	37	17	48614456	48614456	+	Missense_Mutation	SNP	G	G	A	rs149893296	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EPN3-91	NM_017957	exon2	c.G539A	p.R180Q	GCTCCCGGGGCTC	.	94	4	68	0	G|0.996;A|0.004	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MEX3C-659	NM_016626	exon1	c.537_545del	p.179_182del	GCCGCCGCCGCCG	.	29	24	3	2	.	0	0	0	0	0
CPLX4	339302	hgsc.bcm.edu;bcgsc.ca	37	18	56979929	56979929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CPLX4-91	NM_181654	exon2	c.C243A	p.Y81X	GAGCCTGTATTTT	.	60	4	71	0	.	0	0	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ATP9B-93	NM_198531	exon1	c.A115G	p.S39G	CGGCACAGCAGGT	.	14	13	2	0	A|0.693;G|0.307	0	0	0	0	0
KHSRP	8570	broad.mit.edu	37	19	6417772	6417772	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KHSRP-226	NM_003685	exon11	c.C1059T	p.G353G	CCGCACGCCAGCA	.	131	6	89	1	.	12	12	0	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9063150	9063150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MUC16-566	NM_024690	exon3	c.C24296G	p.S8099C	GATGTGGAGACAC	.	291	105	234	1	.	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	106	9	23	0	.	1	1	0	0	0
EMR2	30817	bcgsc.ca	37	19	14877820	14877820	+	Missense_Mutation	SNP	G	G	A	rs74182239		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EMR2-524	NM_001271052	exon5	c.C457T	p.L153F	GTTTGAGCTTGAA	.	35	26	118	8	A|1.000;|0.000	0	0	0	0	0
URI1	8725	hgsc.bcm.edu	37	19	30433556	30433556	+	Silent	SNP	C	C	G	rs200928000	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_003796	exon1	c.C102G	p.R34R	GCTGCGCGAGGAG	.	12	12	0	0	C|0.986;G|0.013	1	0	1	0	0
RHPN2	85415	ucsc.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	RHPN2-516	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	30	8	20	0	.	0	0	0	0	0
CATSPERG	57828	broad.mit.edu	37	19	38827960	38827960	+	Missense_Mutation	SNP	T	T	C	rs2302182	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CATSPERG-92	NM_021185	exon2	c.T86C	p.L29P	CAGTGCTCCTGGC	.	115	3	85	0	T|0.855;C|0.145	1	1	0	0	0
TARM1	441864	broad.mit.edu	37	19	54577305	54577305	+	Silent	SNP	C	C	T	rs58216808		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_001135686	exon4	c.G525A	p.A175A	CTTCCCCGCTGGA	.	213	4	184	1	C|0.988;T|0.012	0	0	0	0	0
KHK	3795	bcgsc.ca	37	2	27315252	27315252	+	Missense_Mutation	SNP	G	G	A	rs2304681	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KHK-115	NM_006488	exon2	c.G145A	p.V49I	TGCACCGTTCTCT	.	77	5	78	0	G|0.648;A|0.352	1	1	0	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	6	6	0	0	T|0.817;C|0.180	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	168	43	94	10	.	2	2	0	0	0
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	122493289	122493289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MKI67IP-90	NM_032390	exon2	c.A143G	p.Y48C	CGCACATAGACTA	.	47	12	44	0	.	2	1	1	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152382545	152382545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	NEB-145	NM_001271208	exon151	c.A22193T	p.Q7398L	GAGCCCTGTGCCA	.	211	44	148	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu	37	2	168099448	168099448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	XIRP2-104	NM_152381	exon9	c.G1546T	p.D516Y	GAAAAAGATTATA	.	52	4	74	0	.	0	0	0	0	0
C2orf83	56918	broad.mit.edu;ucsc.edu	37	2	228477731	228477731	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	C2orf83-90	NM_001162483	exon3	c.C210A	p.A70A	GGAGGGGGCAGTT	.	39	4	35	1	.	0	0	0	0	0
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	229890685	229890685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PID1-94	NM_017933	exon4	c.G410A	p.R137Q	AATGGCCGGATTT	.	183	67	155	0	.	1	1	0	0	0
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234621931	234621931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	UGT1A5-3	NM_019078	exon1	c.A294T	p.Q98H	CACTCAATCGTTC	.	153	27	119	0	.	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ESPNL-69	NM_194312	exon1	c.G276A	p.E92E	CCGCGAGGGGGGC	.	11	10	2	0	G|0.739;A|0.261	0	0	0	0	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2945574	2945574	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRA-227	NM_002836	exon9	c.C141G	p.A47A	AGAGGCCAAAACT	.	159	28	87	0	.	1	0	1	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	20	9	0	0	C|0.751;T|0.249	0	0	0	0	0
C20orf78	100128496	broad.mit.edu	37	20	18790675	18790675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	C20orf78-71	NM_001242671	exon3	c.201delA	p.K67fs	GAGGTCTTTTTTG	.	383	9	192	0	.	0	0	0	0	0
INSM1	3642	hgsc.bcm.edu	37	20	20348962	20348962	+	Silent	SNP	C	C	T	rs111558392	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	INSM1-91	NM_002196	exon1	c.C51T	p.S17S	CGTTTCCTACCGG	.	11	5	0	0	C|0.912;T|0.088	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	927	33	902	11	.	14	14	0	0	0
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33225690	33225693	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	CTTT	CTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PIGU-226	NM_080476	exon5	c.415_418del	p.139_140del	GGGCCACTTTCAA	.	159	35	90	0	.	0	0	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47605959	47605959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ARFGEF2-358	NM_006420	exon19	c.C2671T	p.R891W	CATGTCCGGCCAA	.	191	96	83	0	.	0	0	0	0	0
B4GALT5	9334	ucsc.edu;bcgsc.ca	37	20	48252968	48252968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	B4GALT5-91	NM_004776	exon9	c.C1048T	p.R350W	CTTGCCGTTCTTT	.	473	193	234	2	.	4	3	1	0	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56090878	56090878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CTCFL-292	NM_001269044	exon5	c.A1072G	p.K358E	GGCGCTTCAATTT	.	79	9	43	0	.	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	39	25	38	6	C|1.000;|0.000	0	0	0	0	0
GSTT2	2953	bcgsc.ca	37	22	24325062	24325062	+	Missense_Mutation	SNP	G	G	A	rs78284383	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GSTT2-68	NM_000854	exon4	c.G352A	p.V118M	CATCAGGTGTTGG	.	260	7	547	3	G|0.850;A|0.151	0	0	0	0	0
FAM212A	389119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49842192	49842192	+	Silent	SNP	C	C	T	rs146996587		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_203370	exon2	c.C636T	p.D212D	GGGTGACGGAGGT	.	155	56	209	1	C|0.999;T|0.000	2	2	0	0	0
ITIH1	3697	bcgsc.ca	37	3	52824813	52824813	+	Silent	SNP	C	C	T	rs146607393	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ITIH1-93	NM_002215	exon20	c.C2370T	p.D790D	TGTGGACGACGGT	.	245	7	256	1	C|1.000;T|0.000	0	0	0	0	0
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164748583	164748583	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SI-104	NM_001041	exon25	c.G2809C	p.E937Q	CATTTTCTGAGAA	.	147	29	121	0	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	146	19	33	0	T|0.980;C|0.020	1	1	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	19	17	3	0	C|1.000;|0.000	9	6	3	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	6	6	0	0	G|0.440;A|0.560	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	488	26	340	1	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537081	88537081	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DSPP-90	NM_014208	exon5	c.C3267T	p.D1089D	CAGTGACAGCAGC	.	194	67	143	2	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114244940	114244940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ANK2-583	NM_001127493	exon28	c.G2863T	p.D955Y	GAACGTGACAACA	.	161	27	147	0	.	0	0	0	0	0
WDR17	116966	bcgsc.ca	37	4	177061126	177061126	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	WDR17-95	NM_181265	exon10	c.1442+1G>T	.	TTTCTGGTAAGTA	.	63	4	62	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	8	8	0	0	C|0.454;G|0.546	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13913969	13913969	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DNAH5-182	NM_001369	exon11	c.C1419T	p.F473F	AGTTTCGAATTTT	.	81	6	85	0	.	0	0	0	0	0
CKMT2	1160	broad.mit.edu;bcgsc.ca	37	5	80550829	80550829	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CKMT2-90	NM_001825	exon6	c.C465T	p.F155F	GCAGTTCGACGAG	.	347	10	169	0	.	7	7	0	0	0
GPR150	285601	hgsc.bcm.edu	37	5	94956619	94956619	+	Missense_Mutation	SNP	G	G	C	rs113272282		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GPR150-90	NM_199243	exon1	c.G640C	p.E214Q	CCGGGGGAGCGTC	.	20	14	0	0	G|0.844;C|0.156	0	0	0	0	0
CD14	929	broad.mit.edu	37	5	140012352	140012352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CD14-90	NM_001174105	exon3	c.G217T	p.V73F	CATCGACGCGCTT	.	106	4	55	0	.	4	4	0	0	0
DND1	373863	hgsc.bcm.edu	37	5	140052320	140052320	+	Missense_Mutation	SNP	T	T	C	rs201446376	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DND1-90	NM_194249	exon3	c.A314G	p.Y105C	GAGCTGTAGCGGG	.	76	7	8	0	T|0.983;C|0.016	4	4	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140572420	140572420	+	Missense_Mutation	SNP	A	A	G	rs61740634		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PCDHB10-92	NM_018930	exon1	c.A295G	p.K99E	GGCCCTAAAGAGC	.	518	75	264	0	A|0.986;G|0.014	0	0	0	0	0
KCTD16	57528	broad.mit.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KCTD16-137	NM_020768	exon4	c.1141delA	p.K381fs	AGCAGCAAAAAAA	.	237	7	124	0	.	0	0	0	0	0
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178419079	178419079	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GRM6-588	NM_000843	exon2	c.C510T	p.P170P	GATCTGGGGTATC	.	132	79	48	0	.	0	0	0	0	0
CANX	821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179149880	179149880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CANX-90	NM_001746	exon11	c.A1258G	p.S420G	CCTTTTAGTGCTA	.	137	28	50	0	.	13	13	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	13	13	0	0	A|0.006;G|0.994	0	0	0	0	0
CYP21A2	1589	bcgsc.ca	37	6	32006886	32006886	+	Splice_Site	SNP	G	G	A	rs75730897	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CYP21A2-68	.	.	.	.	TGTCTAGGAACTA	.	204	6	291	3	G|0.763;A|0.237	3	1	2	0	0
ITPR3	3710	bcgsc.ca	37	6	33657016	33657016	+	Silent	SNP	C	C	T	rs150616390	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ITPR3-1085	NM_002224	exon50	c.C6696T	p.G2232G	CCCAGGCGTGCTG	.	34	7	43	0	C|0.999;T|0.001	0	0	0	0	0
MCM9	254394	bcgsc.ca	37	6	119136759	119136759	+	Missense_Mutation	SNP	A	A	C	rs65685	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MCM9-515	NM_017696	exon12	c.T2660G	p.M887R	TCCAGCATTCTGT	.	65	4	51	0	A|0.878;C|0.085	0	0	0	0	0
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129381036	129381036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LAMA2-162	NM_000426	exon3	c.C391A	p.Q131K	GATTTACAGCAGG	.	229	28	267	1	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	9	9	0	0	G|0.492;C|0.508	0	0	0	0	0
EZR	7430	broad.mit.edu	37	6	159188467	159188467	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EZR-70	NM_003379	exon12	c.A1422C	p.P474P	GGGGGGTGGTGGG	.	90	21	69	11	.	18	17	1	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	11	11	0	0	G|0.411;T|0.589	0	0	0	0	0
C7orf25	79020	hgsc.bcm.edu	37	7	42951515	42951515	+	Missense_Mutation	SNP	G	G	A	rs647117	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	C7orf25-69	NM_001099858	exon1	c.C152T	p.P51L	CTCACCGGCAGCG	.	5	5	0	0	G|0.340;A|0.660	0	0	0	0	0
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102553550	102553550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FBXL13-226	NM_001111038	exon11	c.C991T	p.L331F	CAGAGAGGTCCAG	.	138	13	142	0	.	1	1	0	0	0
ASB15	142685	bcgsc.ca	37	7	123269118	123269118	+	Missense_Mutation	SNP	G	G	C	rs4731112	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ASB15-228	NM_080928	exon8	c.G1070C	p.G357A	ATTTTGGCGTTTC	.	338	9	265	1	G|0.256;C|0.744	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462337	149462337	+	Silent	SNP	G	G	A	rs855667	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZNF467-90	NM_207336	exon5	c.C1254T	p.P418P	CACCACGGGATCG	.	4	4	0	0	G|0.763;A|0.237	0	0	0	0	0
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150500884	150500884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TMEM176A-92	NM_018487	exon5	c.G519T	p.R173S	CAGAAGGCTACAC	.	77	19	71	0	.	0	0	0	0	0
SFTPC	6440	bcgsc.ca	37	8	22021037	22021037	+	Missense_Mutation	SNP	C	C	A	rs4715	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SFTPC-90	NM_003018	exon4	c.C413A	p.T138N	CTCTCACTAGAAA	.	127	6	115	1	C|0.796;A|0.204	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	23	23	0	0	G|0.992;C|0.006	0	0	0	0	0
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4685143	4685143	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDC37L1-90	NM_017913	exon2	c.G399A	p.K133K	TAGCAAGGATGTT	.	181	66	181	0	.	3	1	2	0	0
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8485824	8485824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRD-912	NM_002839	exon28	c.C2993A	p.T998K	TTGCTCGTATGAG	.	185	23	159	1	.	0	0	0	0	0
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94985663	94985663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	IARS-92	NM_013417	exon32	c.A3518G	p.Y1173C	TTGATATACTGAC	.	152	67	131	0	.	11	7	4	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101983912	101983912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ALG2-92	NM_033087	exon1	c.T265G	p.C89G	AGGCGCAGACGGC	.	14	14	3	0	.	1	0	1	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	9	9	0	0	A|0.235;G|0.765	0	0	0	0	0
ARSD	414	bcgsc.ca	37	X	2836037	2836037	+	Missense_Mutation	SNP	G	G	C	rs211653	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ARSD-130	NM_001669	exon5	c.C671G	p.S224C	GAGACAGAGAAGA	.	76	4	93	0	0|0.004;C|0.405	0	0	0	0	0
ASB11	140456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15332559	15332559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ASB11-289	NM_001012428	exon1	c.G50C	p.R17P	CTGATACGTTCTG	.	35	15	51	0	.	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	32407770	32407770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DMD-265	NM_004006	exon32	c.A4366C	p.M1456L	ACTTCATGGAGAC	.	38	15	46	0	.	0	0	0	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864220	102864220	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TCEAL3-90	NM_001006933	exon3	c.C228A	p.G76G	TGAGGGCAAGCCA	.	131	22	75	12	.	28	27	1	0	0
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	138713564	138713564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MCF2-227	NM_001171876	exon6	c.T458C	p.I153T	CTGAAGATGATCC	.	144	8	110	0	.	0	0	0	0	0
IL9R	3581	broad.mit.edu	37	X	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	rs71382248		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	IL9R-40	NM_002186	exon9	c.C1296G	p.S432R	GAGCAGCAGCAGC	.	127	4	108	0	C|1.000;|0.000	0	0	0	0	0
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7915003	7915004	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EVI5L-91	NM_001159944	exon5	c.748_749insT	p.L250fs	TACATGCTGCAGG	.	88	15	70	0	.	0	0	0	0	0