Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
VWA5B1	127731	bcgsc.ca	37	1	20640906	20640906	+	Silent	SNP	C	C	T	rs61741263	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001039500	exon4	c.C384T	p.F128F	CCTGTTCGTGGCC	.	127	5	208	1	C|0.987;T|0.013	0	0	0	0	0
MATN1	4146	bcgsc.ca	37	1	31188089	31188089	+	Silent	SNP	C	C	T	rs1065755	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MATN1-90	NM_002379	exon6	c.G1275A	p.E425E	CACAGGCTCTGAG	.	111	7	174	0	C|0.696;T|0.304	0	0	0	0	0
HIAT1	64645	broad.mit.edu	37	1	100527445	100527445	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	HIAT1-90	NM_033055	exon5	c.G426T	p.V142V	TTCTGTGGTATTT	.	90	4	115	0	.	31	30	1	0	0
LAMC1	3915	bcgsc.ca	37	1	183072590	183072590	+	Silent	SNP	T	T	C	rs2296288	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	LAMC1-252	NM_002293	exon2	c.T546C	p.C182C	TTCCTGTGAGAAC	.	208	7	362	0	T|0.486;C|0.514	11	11	0	0	0
CRB1	23418	broad.mit.edu	37	1	197298083	197298083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CRB1-161	NM_201253	exon2	c.G602T	p.C201F	CTACATGCCTCAA	.	69	3	89	1	.	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	9	8	4	0	T|0.721;G|0.279	17	0	17	0	0
OR2T34	127068	ucsc.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs946770		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	OR2T34-69	NM_001001821	exon1	c.C325T	p.H109Y	TCAGGTGGAAGAA	.	33	9	278	2	.	0	0	0	0	0
SFMBT2	57713	hgsc.bcm.edu	37	10	7213977	7213977	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SFMBT2-141	NM_001029880	exon19	c.C2295T	p.S765S	TGAGCCGCTCCGC	.	19	6	0	0	.	2	2	0	0	0
TECTB	6975	broad.mit.edu	37	10	114053512	114053512	+	Missense_Mutation	SNP	T	T	A	rs41296127	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	TECTB-90	NM_058222	exon5	c.T500A	p.I167N	TCTCCATCAAGAA	.	143	7	131	1	T|0.997;A|0.003	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	66	48	200	8	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	66	33	237	1	C|1.000;|0.000	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	67	15	51	0	.	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	FAM86C1-90	NM_152563	exon1	c.G89C	p.R30P	CCTTCCGCTGGCA	.	7	7	0	0	G|0.601;C|0.399	0	0	0	0	0
C11orf92	399948	bcgsc.ca	37	11	111167557	111167557	+	RNA	SNP	A	A	C	rs6589218	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	C11orf92-226	.	.	.	.	GGGGCAAGGCCTA	.	174	8	202	0	A|0.335;C|0.665	1	1	0	0	0
KLRC4-KLRK1	0	bcgsc.ca	37	12	10525740	10525740	+	Silent	SNP	C	C	T	rs1049172	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001199805	exon13	c.G624A	p.T208T	GATGTACGTATTT	.	107	6	92	0	C|0.332;T|0.668	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	27	14	0	0	C|0.752;T|0.248	1	1	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	15	8	0	0	C|0.873;T|0.127	3	0	3	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	8	6	1	0	G|0.789;A|0.211	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	9	8	0	0	C|0.569;G|0.431	2	0	2	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	44	43	1	0	T|0.478;C|0.522	1	0	1	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	C14orf180-492	NM_001008404	exon5	c.482_784del	p.161_161del	GGCTCTGACGGGC	.	40	18	1	1	-|1.000;|0.000	0	0	0	0	0
PLCB2	5330	hgsc.bcm.edu	37	15	40583560	40583560	+	Silent	SNP	G	G	T	rs62021888		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PLCB2-275	NM_004573	exon26	c.C2776A	p.R926R	CGCCCCGCTGCAG	.	4	4	0	0	G|0.817;T|0.183	0	0	0	0	0
DUOX2	50506	bcgsc.ca	37	15	45388196	45388196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DUOX2-95	NM_014080	exon30	c.C3910T	p.R1304W	CGATCCGCACCCA	.	111	5	207	2	.	0	0	0	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49319661	49319661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SECISBP2L-136	NM_001193489	exon7	c.936delC	p.S312fs	TACATTGGACCAA	.	6	2	8	0	.	0	0	0	0	0
DMXL2	23312	broad.mit.edu	37	15	51830641	51830641	+	Missense_Mutation	SNP	T	T	G	rs143811213		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DMXL2-99	NM_001174117	exon10	c.A1114C	p.N372H	AGACATTTGGAAT	.	36	3	44	0	T|1.000;G|0.000	0	0	0	0	0
POLR2M	81488	hgsc.bcm.edu	37	15	58001174	58001174	+	Missense_Mutation	SNP	A	A	C	rs61758130	bycluster;byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_015532	exon2	c.A376C	p.T126P	TCTCAAACCTCAC	.	136	7	168	0	A|0.119;C|0.881	34	34	0	0	0
C15orf40	123207	broad.mit.edu	37	15	83680329	83680329	+	Missense_Mutation	SNP	G	G	A	rs17361375	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	C15orf40-91	NM_001160116	exon1	c.C31T	p.L11F	CCCGAAGGTGCCT	.	15	3	24	0	G|0.855;A|0.145	17	17	0	0	0
SEPT12	124404	bcgsc.ca	37	16	4837545	4837545	+	Silent	SNP	A	A	G	rs9673735	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SEPT12-91	NM_144605	exon2	c.T102C	p.A34A	CAGCACAGCCTCA	.	54	4	94	1	A|0.742;G|0.258	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	8	8	0	0	T|0.035;G|0.004	1	0	1	0	0
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58742148	58742148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	GOT2-91	NM_002080	exon10	c.G1220A	p.R407H	GAGATGCGGCCAT	.	94	28	107	0	.	255	168	87	0	0
ELMO3	79767	bcgsc.ca	37	16	67234134	67234134	+	Missense_Mutation	SNP	A	A	G	rs8058861	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ELMO3-90	NM_024712	exon5	c.A442G	p.N148D	CAGAGTAACAGTC	.	188	7	194	3	A|0.847;G|0.153	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72993517	72993517	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFHX3-72	NM_006885	exon2	c.C528T	p.G176G	CCCCGCGCCAGGG	.	86	30	98	0	.	3	1	2	0	0
PKD1L2	114780	bcgsc.ca	37	16	81232564	81232564	+	Missense_Mutation	SNP	T	T	G	rs7194871	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PKD1L2-92	NM_001076780	exon7	c.A1246C	p.K416Q	TCAGTTTCTGGGT	.	192	7	162	1	T|0.190;G|0.810	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	16	16	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	19	13	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	18	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	15	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	15	13	0	0	.	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CDH15-523	NM_004933	exon11	c.A1750C	p.K584Q	TGCGGCAAGGACG	.	8	5	0	0	A|0.532;C|0.468	0	0	0	0	0
NLGN2	57555	hgsc.bcm.edu	37	17	7320874	7320874	+	Missense_Mutation	SNP	C	C	T	rs62061174		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	NLGN2-90	NM_020795	exon7	c.C2264T	p.A755V	TCGGGGCGGACCC	.	21	10	0	0	C|0.986;T|0.014	1	0	1	0	0
TMEM132E	124842	bcgsc.ca	37	17	32957114	32957114	+	Missense_Mutation	SNP	G	G	A	rs56879769	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	TMEM132E-68	NM_207313	exon6	c.G1156A	p.V386I	GGCCTCGTCCTGG	.	89	5	170	0	G|0.952;A|0.048	5	5	0	0	0
STARD3	10948	bcgsc.ca	37	17	37815749	37815749	+	Silent	SNP	G	G	A	rs73296109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	STARD3-90	NM_006804	exon9	c.G738A	p.T246T	GGCCACGGCAGTG	.	94	4	177	1	A|0.046;C|0.000;G|0.954;T|0.000	47	47	0	0	0
IKZF3	22806	broad.mit.edu	37	17	37922670	37922670	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	IKZF3-971	NM_012481	exon8	c.C903A	p.T301T	CATGCGGGTCTGT	.	55	3	79	0	.	0	0	0	0	0
THRA	7067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38240130	38240130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	THRA-186	NM_001190918	exon5	c.T265C	p.Y89H	CCCACCTATTCCT	.	85	24	145	0	.	60	30	30	0	0
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43347828	43347828	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MAP3K14-1453	.	.	.	.	CAGACACGCGGTG	.	30	11	73	0	.	14	10	4	0	0
RNFT1	51136	bcgsc.ca	37	17	58031412	58031412	+	Silent	SNP	A	A	G	rs11368	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	RNFT1-226	NM_016125	exon8	c.T1167C	p.I389I	CTGACAAATGAGA	.	142	5	233	2	A|0.499;G|0.501	0	0	0	0	0
PGS1	9489	hgsc.bcm.edu	37	17	76374760	76374760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PGS1-90	NM_024419	exon1	c.C14G	p.A5G	TGGCGGCGGCAGC	.	24	8	1	0	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	18	17	2	0	T|0.767;C|0.233	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	7	7	0	0	C|0.780;G|0.220	0	0	0	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_021231	exon9	c.C1496T	p.A499V	GGCGCCGCGTCCT	.	12	7	0	0	G|0.535;A|0.465	2	0	2	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217510	4217510	+	Missense_Mutation	SNP	A	A	T	rs12980998	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ANKRD24-68	NM_133475	exon18	c.A2353T	p.T785S	GACACCACACAGC	.	11	4	0	0	A|0.731;T|0.269	0	0	0	0	0
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6937659	6937659	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	EMR1-526	NM_001974	exon20	c.G2655A	p.T885T	CAAGACGGTGAGA	.	104	29	100	0	.	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	13	10	3	0	C|0.769;T|0.231	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	150	14	13	0	.	20	18	2	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409706	13409706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CACNA1A-67	NM_001127221	exon19	c.G2744A	p.G915E	CAGAACCCGGGTT	.	9	6	0	0	.	0	0	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17296757	17296757	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MYO9B-67	NM_001130065	exon18	c.C2524T	p.L842L	GAGGCACTGGGGA	.	132	25	116	0	.	60	41	19	0	0
ADCK4	79934	broad.mit.edu	37	19	41209717	41209717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ADCK4-319	NM_024876	exon8	c.T620G	p.V207G	GAGGCCACCTTGG	.	104	23	99	17	.	22	20	2	0	0
CIC	23152	hgsc.bcm.edu	37	19	42799208	42799208	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CIC-591	NM_015125	exon20	c.G4692A	p.S1564S	CAGCTCGGACTCT	.	14	8	0	0	.	22	11	11	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	44	18	1	0	C|0.804;T|0.196	32	17	15	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	38	15	0	0	C|0.254;G|0.746	0	0	0	0	0
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47280654	47280654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SLC1A5-90	NM_005628	exon6	c.C1067T	p.T356M	GGCAGCGTGGCGG	.	121	25	111	0	.	0	0	0	0	0
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47935685	47935685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SLC8A2-94	NM_015063	exon9	c.G2128A	p.E710K	CGTCCTCCTCCTC	.	95	14	87	0	.	9	5	4	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	15	8	0	0	G|0.917;A|0.083	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MYH14-23	NM_001077186	exon2	c.C91A	p.P31T	TTCACGCCCCGCG	.	10	6	0	0	T|0.171;G|0.829	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	17	17	0	0	T|0.228;C|0.772	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	25	24	2	2	.	0	0	0	0	0
RGPD8	727851	broad.mit.edu	37	2	113147740	113147740	+	Missense_Mutation	SNP	C	C	T	rs201000445		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001164463	exon20	c.G2782A	p.E928K	CTGGTTCCGAAAT	.	226	11	251	0	C|0.998;T|0.002	56	56	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919070	132919070	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	.	.	.	.	TTCTTCGCATCTC	.	74	4	67	1	.	0	0	0	0	0
BMPR2	659	hgsc.bcm.edu	37	2	203379616	203379616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	BMPR2-1003	NM_001204	exon5	c.C535T	p.R179C	GGAGACCGTAAAC	.	32	2	70	0	.	0	0	0	0	0
DES	1674	hgsc.bcm.edu	37	2	220283238	220283238	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DES-514	NM_001927	exon1	c.C54T	p.F18F	CACCTTCGGCGGG	.	32	15	0	0	.	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu	37	2	220348480	220348480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SPEG-383	NM_005876	exon30	c.G6295C	p.A2099P	GGCCGTGCTCGGG	.	6	5	0	0	.	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	rs61730278	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ALPPL2-91	NM_031313	exon11	c.G1493C	p.R498P	CGCCCCGCGCCGG	.	25	12	0	0	G|0.946;C|0.054	0	0	0	0	0
NECAB3	63941	bcgsc.ca	37	20	32257182	32257182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	NECAB3-91	NM_031232	exon5	c.T386C	p.L129P	CTCACCAGCTTGG	.	65	5	83	0	.	1	1	0	0	0
TNNC2	7125	bcgsc.ca	37	20	44452697	44452697	+	Silent	SNP	C	C	A	rs4629	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	TNNC2-91	NM_003279	exon5	c.G384T	p.T128T	CTCGTCCGTCACG	.	88	5	135	1	C|0.569;A|0.431	14	14	0	0	0
KRTAP10-10	353333	bcgsc.ca	37	21	46057590	46057590	+	Missense_Mutation	SNP	A	A	T	rs9306109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	KRTAP10-10-90	NM_181688	exon1	c.A256T	p.T86S	TGCTGCACCTCCT	.	100	6	132	1	A|0.853;T|0.147	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	143	54	200	0	A|0.500;T|0.500	57	57	0	0	0
SAMM50	25813	bcgsc.ca	37	22	44368122	44368122	+	Missense_Mutation	SNP	A	A	G	rs3761472	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	SAMM50-91	NM_015380	exon5	c.A329G	p.D110G	GTGATGACGCACT	.	83	4	121	1	A|0.790;G|0.210	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155	60	159	1	.	734	472	261	0	1
MST1	4485	broad.mit.edu	37	3	49723596	49723596	+	Missense_Mutation	SNP	G	G	A	rs200900272		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MST1-278	NM_020998	exon9	c.C1046T	p.P349L	CCGTCGGGGTTCC	.	71	3	71	1	.	5	5	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	14	9	0	0	T|0.749;G|0.251	1	1	0	0	0
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56667845	56667845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001112736	exon18	c.G2974A	p.D992N	ACACGTCATCCTC	.	66	22	112	0	.	25	15	10	0	0
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132061444	132061444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ACPP-91	NM_001099	exon6	c.C604T	p.L202F	CAGGACCTTTTTG	.	40	10	35	0	.	24	18	6	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PRR23C-23	NM_001134657	exon1	c.A120C	p.R40R	CGCCGCTCGGGAT	.	33	21	0	0	T|0.848;G|0.152	0	0	0	0	0
LRRC33	375387	broad.mit.edu;bcgsc.ca	37	3	196387651	196387651	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	LRRC33-92	NM_198565	exon3	c.C1137T	p.T379T	GCTCACCGAGCTG	.	72	22	57	1	.	1	1	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	8	6	0	0	G|0.946;A|0.054	0	0	0	0	0
PSAPL1	768239	bcgsc.ca	37	4	7436073	7436073	+	Silent	SNP	C	C	T	rs61740031	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PSAPL1-68	NM_001085382	exon1	c.G534A	p.A178A	TTCAGGCGCCTGG	.	73	5	105	0	C|0.870;T|0.130	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	141	12	347	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	rs202222170		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DSPP-90	NM_014208	exon5	c.A3185G	p.D1062G	GCAGTGACAGCAG	.	251	17	488	6	.	0	0	0	0	0
PDCD6	10016	hgsc.bcm.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PDCD6-290	NM_013232	exon1	c.23_34del	p.8_12del	ACCGCCCCGGCCC	.	30	13	4	2	.	0	0	0	0	0
ARRDC3	57561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90671379	90671379	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ARRDC3-136	NM_020801	exon4	c.T562G	p.S188A	GGCCTGAGGTACA	.	77	21	57	1	.	76	54	22	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	5	5	0	0	T|0.046;G|0.950	4	0	4	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797105	128797105	+	Silent	SNP	G	G	A	rs72663400	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ADAMTS19-295	NM_133638	exon2	c.G384A	p.G128G	CAGCGGGGCTGCC	.	9	7	0	0	G|0.815;A|0.185	0	0	0	0	0
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140719726	140719726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PCDHGA2-71	NM_018915	exon1	c.G1188T	p.K396N	AGAAAAGTCAGTA	.	117	18	86	0	.	15	11	4	0	0
PCDHGA3	56112	mdanderson.org	37	5	140725420	140725420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PCDHGA3-68	NM_032011	exon1	c.G1820A	p.R607H	CCTACCGCCTGCT	.	294	47	134	3	.	35	33	2	0	0
ARAP3	64411	broad.mit.edu	37	5	141034950	141034950	+	Silent	SNP	C	C	T	rs72792351	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ARAP3-291	NM_022481	exon32	c.G4128A	p.R1376R	GGTCCTCCGGTTG	.	328	7	331	1	C|0.996;T|0.004	3	3	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32629963	32629963	+	Missense_Mutation	SNP	C	C	T	rs1049100	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	HLA-DQB1-22	NM_002123	exon3	c.G442A	p.V148I	AGCAGACCAGCAG	.	47	5	69	0	C|0.816;T|0.184	3	3	0	0	0
AIM1	202	bcgsc.ca	37	6	106987370	106987370	+	Missense_Mutation	SNP	A	A	C	rs783396	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	AIM1-139	NM_001624	exon7	c.A3587C	p.E1196A	CAGAAGAAGCGTA	.	79	5	104	1	A|0.075;C|0.918	3	3	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	21	21	0	0	G|0.668;A|0.332	0	0	0	0	0
DLL1	28514	broad.mit.edu	37	6	170594743	170594743	+	Missense_Mutation	SNP	C	C	T	rs149768426	alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DLL1-659	NM_005618	exon6	c.G776A	p.R259H	GGATAGCGGATAC	.	56	4	95	0	C|1.000;G|0.000	9	9	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	MICALL2-90	NM_182924	exon6	c.T1134C	p.G378G	TCCCCCACCCTGG	.	10	10	0	0	A|0.009;G|0.991	6	0	6	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	26	18	0	0	G|0.456;C|0.544	4	1	3	0	0
AKR1B15	441282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134252962	134252962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	AKR1B15-23	NM_001080538	exon4	c.A203G	p.Y68C	CAGAATATCGCCA	.	146	42	171	1	.	0	0	0	0	0
PTN	5764	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136938212	136938212	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PTN-516	NM_002825	exon3	c.C288T	p.G96G	CTTACCGCCAAAT	.	88	33	76	1	.	0	0	0	0	0
ASIC3	9311	bcgsc.ca	37	7	150747650	150747650	+	Silent	SNP	G	G	T	rs62001897	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_020322	exon3	c.G768T	p.G256G	CTTGGGGGTGTCC	.	59	5	83	0	G|0.956;T|0.044	0	0	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55541829	55541829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	RP1-102	NM_006269	exon4	c.C5387T	p.T1796M	GCCCAACGATGGA	.	225	50	173	0	.	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	37	25	1	0	T|0.935;A|0.065	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	21	20	4	4	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	31	15	2	0	C|0.740;T|0.260	15	10	5	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	51	26	3	0	G|0.246;A|0.754	7	4	3	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	OPLAH-68	.	.	.	.	CCCGAGCCCCCCG	.	11	11	0	0	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	32	31	0	0	G|0.992;C|0.006	1	0	1	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	C9orf66-514	NM_152569	exon1	c.C691G	p.R231G	AGTATCGGGAGGC	.	4	4	0	0	G|0.516;C|0.484	0	0	0	0	0
POLR1E	64425	bcgsc.ca	37	9	37493588	37493588	+	Silent	SNP	C	C	T	rs10758434	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	POLR1E-90	NM_022490	exon6	c.C435T	p.T145T	TACCACCAAACAG	.	81	4	160	2	C|0.795;T|0.205	30	30	0	0	0
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	111812906	111812906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_032012	exon13	c.C1921A	p.L641I	TCAAGAGTGTAGT	.	244	13	457	0	.	40	40	0	0	0
USP20	10868	broad.mit.edu	37	9	132637028	132637028	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	USP20-658	NM_001008563	exon18	c.G1914A	p.T638T	CGGCACGGCAGGC	.	111	7	179	2	.	0	0	0	0	0
LCN15	389812	bcgsc.ca	37	9	139656670	139656670	+	Missense_Mutation	SNP	T	T	C	rs2297722	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	LCN15-68	NM_203347	exon5	c.A490G	p.K164E	TGTCCTTGGGGAG	.	57	5	73	0	T|0.247;C|0.753	0	0	0	0	0
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119504588	119504588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ATP1B4-131	NM_001142447	exon3	c.A347G	p.Y116C	TCATTTACTTCTT	.	97	32	109	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	31	14	10	0	.	0	0	0	0	0
DSTN	11034	broad.mit.edu	37	20	17581488	17581489	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	DSTN-154	NM_006870	exon2	c.109_110insT	p.I37fs	GCTGTCATTTTTT	.	173	24	185	14	.	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	ADAMTS19-295	NM_133638	exon2	c.594_595insCCCGGC	p.N198delinsNPG	GCCAAATCCCGGC	.	48	7	2	0	-|0.817;CCCGGC|0.183	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	13	6	2	0	.	0	0	0	0	0
BHLHE22	27319	broad.mit.edu	37	8	65494007	65494008	+	In_Frame_Ins	INS	-	-	AGCGGC	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	BHLHE22-90	NM_152414	exon1	c.660_661insAGCGGC	p.G220delinsGSG	TAGCGGTAGCGGC	.	10	5	4	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	226	0	426	0	.	0	0	0	0	0