Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 MIB2 142678 hgsc.bcm.edu 37 1 1564067 1564067 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MIB2-90 NM_080875 exon16 c.2512delG p.G838fs GGGGCCGGGGGGG . 61 22 18 1 . 0 0 0 0 0 MORN1 79906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 2316501 2316501 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MORN1-92 NM_024848 exon6 c.C453T p.N151N GTCACCGTTCCTG . 69 29 32 0 . 0 0 0 0 0 RPL22 6146 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 6246838 6246840 + In_Frame_Del DEL TTC TTC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TTC TTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RPL22-650 NM_000983 exon4 c.279_281del p.93_94del AGATTATTCTTCT . 297 191 323 0 . 0 0 0 0 0 DFFA 1676 broad.mit.edu 37 1 10521671 10521671 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DFFA-90 NM_004401 exon6 c.G872A p.R291Q AGCTCCCGCTCAC . 320 6 308 0 . 9 9 0 0 0 ZBTB40 9923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 22852723 22852723 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZBTB40-91 NM_001083621 exon19 c.C3554T p.P1185L TGGCCCCGACAGA . 136 125 115 1 . 0 0 0 0 0 HPCAL4 51440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 40148354 40148354 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HPCAL4-90 NM_016257 exon4 c.G430A p.G144R TGAGCCCGTCCTG . 235 217 210 0 . 0 0 0 0 0 TRIT1 54802 bcgsc.ca 37 1 40309802 40309802 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TRIT1-91 NM_017646 exon10 c.G1205A p.R402Q ATGATTCGATCAC . 92 84 81 3 . 7 0 7 0 0 CYP4A22 284541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 47610627 47610627 + Missense_Mutation SNP C C G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CYP4A22-139 NM_001010969 exon9 c.C1207G p.R403G GATGGGCGCTCCT . 194 173 206 1 . 0 0 0 0 0 RPF1 80135 broad.mit.edu;bcgsc.ca 37 1 84945010 84945010 + Missense_Mutation SNP C C G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RPF1-90 NM_025065 exon1 c.C46G p.L16V AAAAGTCTAAAAC . 129 7 111 1 . 15 15 0 0 0 ZNF326 284695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 90487883 90487883 + Silent SNP G G A rs146247512 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF326-91 NM_182976 exon11 c.G1380A p.A460A GAAGGCGCGATAT . 170 152 197 0 G|0.999;A|0.001 24 0 24 0 0 DPYD 1806 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 97771791 97771791 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DPYD-278 NM_000110 exon17 c.2121delT p.F707fs CTTGGCAAAAAAA . 87 70 72 0 . 0 0 0 0 0 KCNC4 3749 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110766300 110766300 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCNC4-154 NM_001039574 exon2 c.G1393A p.A465T ACCATCGCCATGC . 165 42 155 1 . 0 0 0 0 0 KCNA3 3738 broad.mit.edu 37 1 111216774 111216774 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCNA3-95 NM_002232 exon1 c.G658A p.V220M GCCACACCTGGCG . 81 4 57 0 . 0 0 0 0 0 IGSF3 3321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 117131615 117131615 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . IGSF3-92 NM_001542 exon9 c.C2201T p.A734V AGCACCGCAAAGT . 236 218 221 1 . 4 0 4 0 0 BOLA1 51027 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 149871945 149871945 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BOLA1-69 NM_016074 exon2 c.C333T p.P111P GACCCCCGCCCAG . 117 105 64 1 . 15 0 15 0 0 FLG 2312 broad.mit.edu;bcgsc.ca 37 1 152286313 152286313 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FLG-106 NM_002016 exon3 c.C1049T p.A350V CTGTCTGCAGAGT . 371 11 280 0 . 0 0 0 0 0 SPRR3 6707 ucsc.edu;mdanderson.org 37 1 152975715 152975715 + Silent SNP C C T rs63405761 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPRR3-45 NM_001097589 exon2 c.C219T p.G73G GCCAGGCTGTACC . 105 49 116 0 A|0.000;C|0.697;T|0.303 0 0 0 0 0 SPRR2G 6706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153122484 153122484 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPRR2G-68 NM_001014291 exon2 c.C103A p.P35T GGTAAGGCTCAGG . 76 68 73 0 . 0 0 0 0 0 PBXIP1 57326 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 154917581 154917583 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PBXIP1-153 NM_020524 exon11 c.2113_2115del p.705_705del CTTGTCCTTCTTC . 90 62 81 0 . 0 0 0 0 0 IQGAP3 128239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156498355 156498355 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . IQGAP3-96 NM_178229 exon36 c.C4619T p.A1540V AGCTGAGCAGCAG . 60 51 64 0 . 1 0 1 0 0 KLHDC9 126823 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 161068381 161068382 + Frame_Shift_Del DEL CA CA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KLHDC9-22 NM_152366 exon1 c.56_57del p.19_19del GGAGGCCAGTGGC . 131 113 72 0 . 0 0 0 0 0 TNR 7143 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 175372700 175372700 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TNR-324 NM_003285 exon4 c.G552A p.E184E ACAGGACTCAAAG . 190 162 161 2 . 0 0 0 0 0 TDRD5 163589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 179621206 179621206 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TDRD5-94 NM_001199091 exon13 c.C2034T p.Y678Y TTTATACACGACA . 143 127 135 0 . 1 0 1 0 0 CFH 3075 broad.mit.edu;bcgsc.ca 37 1 196659363 196659363 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CFH-566 NM_001014975 exon9 c.C1330T p.R444C TGCATCCGTGTCA . 464 22 417 1 . 0 0 0 0 0 F13B 2165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197031011 197031011 + Silent SNP G G A rs142562955 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . F13B-92 NM_001994 exon3 c.C354T p.C118C TGAAGCGCAACCA . 108 94 89 0 G|1.000;A|0.000 0 0 0 0 0 NUAK2 81788 ucsc.edu;bcgsc.ca 37 1 205273536 205273536 + Missense_Mutation SNP C C T rs200627742 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NUAK2-391 NM_030952 exon7 c.G929A p.R310Q CCCACTCGGGTGG . 212 191 178 3 . 3 0 3 0 0 SLC41A1 254428 broad.mit.edu;bcgsc.ca 37 1 205760791 205760791 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC41A1-92 NM_173854 exon11 c.G1412A p.G471D TCCAGGCCCCGGC . 248 8 229 0 . 7 7 0 0 0 ACBD3 64746 hgsc.bcm.edu;broad.mit.edu 37 1 226352491 226352491 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ACBD3-226 NM_022735 exon3 c.568delA p.R190fs TTCACCTTTTTTT . 120 30 127 0 . 0 0 0 0 0 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 233135059 233135059 + Missense_Mutation SNP G G A rs201746355 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PCNXL2-91 NM_014801 exon31 c.C5395T p.R1799C GATTGCGGTTGCG . 98 35 113 0 . 5 2 3 0 0 IDI1 3422 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 1088637 1088637 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . IDI1-90 NM_004508 exon4 c.G472T p.A158S CAAGGGCGTCACT . 196 32 94 1 . 443 366 76 0 1 FBXO18 84893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5948345 5948345 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FBXO18-228 NM_032807 exon4 c.A656G p.D219G CAGAGGACAGTAC . 464 99 225 0 . 15 11 4 0 0 SFMBT2 57713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7269870 7269870 + Missense_Mutation SNP C C G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SFMBT2-141 NM_001029880 exon10 c.G1150C p.D384H GATAATCTGCCCA . 108 59 54 0 . 0 0 0 0 0 TAF3 83860 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 10 8051255 8051255 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TAF3-69 NM_031923 exon5 c.G2530A p.V844M GCCCCCGTGCGCA . 75 37 17 0 . 15 5 10 0 0 KIAA1217 56243 hgsc.bcm.edu;ucsc.edu 37 10 24783527 24783527 + Missense_Mutation SNP C C T rs148941784 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIAA1217-98 NM_019590 exon7 c.C1778T p.A593V AAGATGCGTCTAG . 56 6 19 0 C|0.999;T|0.001 0 0 0 0 0 PTCHD3 374308 hgsc.bcm.edu;broad.mit.edu 37 10 27687470 27687470 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PTCHD3-94 NM_001034842 exon4 c.2057delA p.N686fs TAGACATTTTTTT . 33 12 17 0 . 0 0 0 0 0 ZNF25 219749 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 38241708 38241710 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF25-154 NM_145011 exon6 c.716_718del p.239_240del TCACATAGAAGAA . 195 74 117 0 . 0 0 0 0 0 RASSF4 83937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 45484790 45484790 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RASSF4-290 NM_032023 exon7 c.G600A p.L200L AACCCTGCAGGTG . 299 148 162 0 . 3 2 1 0 0 NCOA4 8031 broad.mit.edu 37 10 51579175 51579175 + Missense_Mutation SNP A A C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NCOA4-1042 NM_001145261 exon3 c.A82C p.S28R AGCTCCAGTAATA . 90 10 45 0 . 16 15 1 0 0 ASAH2B 653308 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 52502717 52502717 + Silent SNP G G A rs2820742 by2hit2allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001079516 exon2 c.G33A p.T11T CCGCACGCATTAT . 1088 394 589 3 G|0.500;A|0.500 8 4 4 0 0 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 56423995 56423995 + Missense_Mutation SNP A A C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PCDH15-193 NM_001142763 exon2 c.T28G p.C10G CTAAACATGTCCA . 108 51 44 0 . 0 0 0 0 0 EGR2 1959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 64573625 64573625 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EGR2-92 NM_000399 exon2 c.T773C p.V258A GGGGGCACCCGCA . 146 62 108 0 . 0 0 0 0 0 UNC5B 219699 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73046620 73046620 + Missense_Mutation SNP G G A rs143653939 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . UNC5B-228 NM_001244889 exon5 c.G727A p.V243I GTCATCGTCTACG . 274 126 160 1 G|0.999;A|0.001 0 0 0 0 0 HTR7 3363 broad.mit.edu 37 10 92617259 92617259 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HTR7-91 NM_019860 exon1 c.C170A p.A57E GTGGGCGCCGGGC . 85 5 27 0 . 0 0 0 0 0 MYOF 26509 broad.mit.edu;bcgsc.ca 37 10 95191176 95191176 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYOF-93 NM_133337 exon4 c.C334A p.Q112K TATCTTGCCCTTT . 225 8 152 0 . 0 0 0 0 0 GBF1 8729 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 104136514 104136514 + Silent SNP C C T rs139000128 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GBF1-91 NM_001199378 exon32 c.C4245T p.C1415C GCTCTGCGTCAAG . 40 6 30 1 C|1.000;T|0.000 57 47 10 0 0 C10orf95 79946 hgsc.bcm.edu 37 10 104210735 104210735 + Missense_Mutation SNP C C A rs2281878 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C10orf95-91 NM_024886 exon2 c.G253T p.A85S CGGAAGCTGTGGG . 4 4 0 0 C|0.759;A|0.241 1 1 0 0 0 CALHM1 255022 bcgsc.ca 37 10 105215373 105215373 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CALHM1-91 NM_001001412 exon2 c.G687A p.K229K GAAGAGCTTGCGC . 323 152 156 4 . 0 0 0 0 0 ADRA2A 150 broad.mit.edu 37 10 112839104 112839104 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ADRA2A-90 NM_000681 exon1 c.C1350T p.R450R CCGCCGCGCCTTC . 190 5 86 1 . 33 32 1 0 0 C10orf118 55088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 115904312 115904312 + Missense_Mutation SNP C C T rs201374071 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C10orf118-92 NM_018017 exon6 c.G1165A p.V389I TGATGACGTGAGA . 238 35 120 0 C|0.999;T|0.000 3 3 0 0 0 PNLIPRP3 119548 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118220558 118220558 + Missense_Mutation SNP G G A rs114674677 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PNLIPRP3-91 NM_001011709 exon6 c.G646A p.V216I GTTGACGTTATTC . 182 80 106 0 G|0.999;A|0.001 1 1 0 0 0 PRLHR 2834 broad.mit.edu 37 10 120354224 120354224 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PRLHR-90 NM_004248 exon2 c.A533G p.Y178C ACAGCGTAGGCGC . 21 4 8 0 . 0 0 0 0 0 FAM45A 404636 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 120879946 120879946 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FAM45A-91 NM_207009 exon5 c.C575T p.A192V TAGAAGCGGTCCA . 517 102 273 2 . 19 15 4 0 0 DOCK1 1793 ucsc.edu;bcgsc.ca 37 10 128830513 128830513 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DOCK1-698 NM_001380 exon18 c.G1778A p.G593E GCCTTGGGAGCTG . 620 277 286 2 . 5 0 5 0 0 PWWP2B 170394 broad.mit.edu 37 10 134218800 134218800 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PWWP2B-90 NM_001098637 exon2 c.G796A p.V266M GGAGAGGTGGTCA . 344 8 103 0 . 48 47 1 0 0 KRTAP5-5 439915 broad.mit.edu 37 11 1651158 1651169 + In_Frame_Del DEL GGCTGTGGCTCT GGCTGTGGCTCT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KRTAP5-5-23 NM_001001480 exon1 c.88_99del p.30_33del TGTGGAGGCTGTG . 72 7 17 0 . 0 0 0 0 0 SYT8 90019 hgsc.bcm.edu;ucsc.edu 37 11 1858479 1858479 + Missense_Mutation SNP G G A rs138799724 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SYT8-91 NM_138567 exon9 c.G1024A p.V342I GAGCCCGTAGGCA . 24 11 17 0 G|0.998;A|0.002 0 0 0 0 0 DNHD1 144132 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6550209 6550209 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DNHD1-24 NM_144666 exon12 c.G2205A p.M735I AGACATGAGAGGT . 149 128 142 2 . 0 0 0 0 0 RNF141 50862 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 10540661 10540663 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTC CTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RNF141-226 NM_016422 exon5 c.460_462del p.154_154del ACAACACTCCTCC . 44 35 34 0 . 0 0 0 0 0 KCNJ11 3767 bcgsc.ca 37 11 17409071 17409071 + Missense_Mutation SNP C C T rs77131926 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCNJ11-91 NM_000525 exon1 c.G568A p.A190T GCAGGGCGATCAC . 93 82 107 3 C|0.999;T|0.001 0 0 0 0 0 ABCC8 6833 bcgsc.ca 37 11 17452492 17452492 + Silent SNP G G A rs1799857 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ABCC8-91 NM_000352 exon12 c.C1686T p.H562H GCTGACGTGGCCC . 182 7 156 1 G|0.566;A|0.434 0 0 0 0 0 HPS5 11234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 18303703 18303703 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HPS5-133 NM_181507 exon22 c.G3123A p.T1041T TGGCCTCGTGCTC . 72 66 85 0 . 14 0 14 0 0 BDNF 627 ucsc.edu;bcgsc.ca 37 11 27681195 27681195 + Splice_Site SNP T T C rs28405820 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BDNF-514 . . . . TGTGTGTGCGCGC . 38 34 39 1 . 3 3 0 0 0 SLC39A13 91252 broad.mit.edu 37 11 47433996 47433996 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC39A13-90 NM_152264 exon4 c.G515A p.S172N TGGACAGCAAGGA . 129 4 141 0 . 31 31 0 0 0 PGA5 5222 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 61018642 61018642 + Silent SNP C C T rs12280940 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PGA5-91 NM_014224 exon9 c.C1056T p.N352N CATGAACGTCCCC . 524 103 462 1 C|0.912;T|0.088 0 0 0 0 0 MIR194-2 406970 ucsc.edu;bcgsc.ca 37 11 64658846 64658846 + RNA SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . . . . . CAGATAACAGCAG . 167 150 135 3 . 0 0 0 0 0 DPP3 10072 broad.mit.edu 37 11 66272116 66272116 + Missense_Mutation SNP C C T rs147163996 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DPP3-46 NM_130443 exon17 c.C1912T p.R638W GGAGGGCGGGCCC . 63 3 66 0 C|1.000;T|0.000 19 18 1 0 0 CCS 9973 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66361154 66361154 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CCS-90 NM_005125 exon2 c.C81T p.D27D TGTGGACGCGGTG . 98 89 99 1 . 29 1 28 0 0 MYO7A 4647 broad.mit.edu;bcgsc.ca 37 11 76900479 76900479 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYO7A-138 NM_000260 exon28 c.C3594T p.C1198C TCTCTGCGTGGGC . 83 5 121 1 . 0 0 0 0 0 CADM1 23705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 115111112 115111112 + Silent SNP G G A rs138296059 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CADM1-92 NM_014333 exon2 c.C153T p.D51D TGTCACGTCTTTC . 86 34 96 0 G|1.000;A|0.000 14 8 6 0 0 SIK3 23387 ucsc.edu;bcgsc.ca 37 11 116734454 116734454 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SIK3-919 NM_025164 exon15 c.C1715T p.A572V ATGCTCGCAGCCC . 214 192 196 2 . 5 0 4 1 0 MLL 4297 broad.mit.edu 37 11 118344186 118344186 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL-1255 NM_001197104 exon3 c.2312delC p.T771fs CTCTCACCCCCCC . 119 8 128 0 . 0 0 0 0 0 MLL 4297 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 118344494 118344495 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL-1255 NM_001197104 exon3 c.2620_2621del p.874_874del AAGAGTAGAGAGA . 46 38 47 0 . 0 0 0 0 0 MLL 4297 bcgsc.ca 37 11 118367048 118367048 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL-1255 NM_001197104 exon20 c.C5630T p.A1877V AGTGTGCGTTATG . 123 110 128 3 . 0 0 0 0 0 CCDC77 84318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 539878 539878 + Missense_Mutation SNP A A C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CCDC77-91 NM_032358 exon7 c.A559C p.S187R GAGCAGAGTGAAT . 169 77 94 0 . 8 3 5 0 0 EFCAB4B 84766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 3736625 3736625 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EFCAB4B-92 NM_001144958 exon17 c.C1909T p.R637W ACCGCCGGACCGA . 198 35 91 0 . 0 0 0 0 0 VWF 7450 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6219643 6219643 + Silent SNP G G A rs202062122 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . VWF-163 NM_000552 exon5 c.C429T p.S143S GTTGCCGCTGCCA . 315 163 148 1 G|0.999;A|0.000 15 15 0 0 0 IFFO1 25900 hgsc.bcm.edu;bcgsc.ca 37 12 6657974 6657974 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . IFFO1-68 NM_001193457 exon6 c.1122delG p.G374fs CTTCCGCCCCCCC . 343 48 153 1 . 0 0 0 0 0 LPAR5 57121 broad.mit.edu 37 12 6729418 6729418 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LPAR5-70 NM_001142961 exon2 c.G997A p.E333K ACCTTTCGGATTG . 72 3 33 0 . 0 0 0 0 0 ZNF384 171017 hgsc.bcm.edu 37 12 6787405 6787405 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF384-1083 NM_133476 exon6 c.574delC p.R192fs GGCCCCGGGGTGG . 189 23 88 1 . 0 0 0 0 0 ATN1 1822 ucsc.edu 37 12 7045912 7045912 + Silent SNP G G A rs144280633 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ATN1-139 NM_001007026 exon5 c.G1482A p.Q494Q GCAGCAGCAGCAG . 202 29 131 0 G|0.972;A|0.028 3285 3220 60 4 1 PEX5 5830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7356126 7356126 + Silent SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PEX5-91 NM_001131023 exon10 c.T990G p.L330L TGACCTTACGTCA . 245 138 123 0 . 12 8 4 0 0 MAGOHB 55110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 10766108 10766108 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MAGOHB-153 NM_018048 exon1 c.C24T p.Y8Y GCGCAGGTAGAAA . 260 107 89 0 . 19 13 6 0 0 PRB3 5544 hgsc.bcm.edu 37 12 11420332 11420458 + Splice_Site DEL GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PRB3-1 . . . . CTGGATGAGGGTG . 87 0 35 0 . 0 0 0 0 0 C12orf36 283422 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 13526224 13526224 + RNA SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C12orf36-90 . . . . CCGTCTGTCCACT . 156 65 68 1 . 0 0 0 0 0 KIF21A 55605 broad.mit.edu;bcgsc.ca 37 12 39751149 39751149 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIF21A-97 NM_001173463 exon9 c.C1306T p.R436C TTACACGCAGGTT . 234 7 100 1 . 1 1 0 0 0 SLC2A13 114134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 40422218 40422218 + Silent SNP T T A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC2A13-515 NM_052885 exon3 c.A810T p.G270G AGTCTGTCCTTTC . 62 9 42 0 . 4 4 0 0 0 CACNB3 784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49218962 49218962 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CACNB3-90 NM_000725 exon7 c.C509T p.P170L TTCCCCCATATGA . 333 59 161 0 . 6 4 2 0 0 LETMD1 25875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 51453177 51453177 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LETMD1-90 NM_001243689 exon9 c.T1085C p.V362A ACGTGGTCCTGCT . 406 187 175 0 . 59 32 27 0 0 HOXC4 3221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54448765 54448765 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HOXC4-91 NM_014620 exon4 c.C571A p.H191N ATCGCCCACTCGC . 430 196 200 0 . 8 5 3 0 0 CBX5 23468 hgsc.bcm.edu;broad.mit.edu 37 12 54645832 54645832 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CBX5-226 NM_012117 exon3 c.317delA p.K106fs TCTCTCTTTTTTT . 25 13 13 0 . 0 0 0 0 0 LRP1 4035 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57579562 57579562 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LRP1-596 NM_002332 exon41 c.G6712A p.A2238T GTCATCGCCCTGG . 243 106 119 2 . 2 2 0 0 0 XPOT 11260 hgsc.bcm.edu;broad.mit.edu 37 12 64812755 64812755 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . XPOT-652 NM_007235 exon6 c.370delT p.F124fs CCCAAGTTTTTTT . 250 135 122 0 . 0 0 0 0 0 KRR1 11103 hgsc.bcm.edu;broad.mit.edu 37 12 75893593 75893593 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KRR1-92 NM_007043 exon10 c.1142delA p.K381fs TGTTACTTTTTTT . 59 19 24 0 . 0 0 0 0 0 CCDC53 51019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 102437938 102437938 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_016053 exon4 c.A269G p.N90S GTGACATTTAAAG . 224 96 85 0 . 105 65 40 0 0 ALDH1L2 160428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 105446693 105446693 + Missense_Mutation SNP T T A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ALDH1L2-91 NM_001034173 exon11 c.A1304T p.N435I ATTTCATTGACCT . 196 68 108 0 . 0 0 0 0 0 CUX2 23316 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 111760254 111760254 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CUX2-140 NM_015267 exon18 c.C2796T p.S932S CGTGAGCGACATG . 318 175 58 1 . 0 0 0 0 0 SETD1B 23067 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 122242658 122242658 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SETD1B-86 NM_015048 exon1 c.15delC p.H5fs CAGTCACCCCCCC . 164 70 87 0 . 0 0 0 0 0 EP400 57634 ucsc.edu;bcgsc.ca 37 12 132547090 132547090 + Silent SNP A A G rs7974276 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EP400-520 NM_015409 exon47 c.A8178G p.Q2726Q GCAGCAACAACAG . 291 81 164 2 A|0.794;G|0.206 79 6 72 0 1 EP400 57634 bcgsc.ca 37 12 132547093 132547093 + Silent SNP A A G rs28513925 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EP400-520 NM_015409 exon47 c.A8181G p.Q2727Q GCAACAACAGCAG . 298 77 169 3 A|0.500;G|0.500 43 6 37 0 0 NUFIP1 26747 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 45563471 45563471 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NUFIP1-90 NM_012345 exon1 c.G101A p.R34Q CTGTCCCGCGGCG . 128 111 90 1 . 1 0 1 0 0 TRIM13 10206 ucsc.edu;bcgsc.ca;mdanderson.org 37 13 50590277 50590277 + RNA SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TRIM13-228 . . . . AAGTTCCTCAGGC . 63 24 54 0 . 0 0 0 0 0 SLITRK1 114798 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 84454943 84454943 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLITRK1-94 NM_052910 exon1 c.G700T p.A234S TCAGGGCATTCTT . 107 86 117 1 . 0 0 0 0 0 SLC15A1 6564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99339879 99339879 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC15A1-91 NM_005073 exon21 c.G1783A p.E595K CCACTTCGCCACA . 118 19 116 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;broad.mit.edu 37 13 103381996 103381996 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001146197 exon4 c.21051delT p.F7017fs ACAGGCAAAAAAA . 70 21 55 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 103391148 103391148 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001146197 exon4 c.G11899T p.E3967X AAATCTCAACTTC . 37 32 40 0 . 0 0 0 0 0 SLC10A2 6555 broad.mit.edu;bcgsc.ca 37 13 103718400 103718400 + Missense_Mutation SNP C C T rs201168803 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC10A2-94 NM_000452 exon1 c.G200A p.G67D CAAATGCCCCACG . 158 15 139 0 . 0 0 0 0 0 RPGRIP1 57096 bcgsc.ca 37 14 21793413 21793413 + Silent SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RPGRIP1-140 NM_020366 exon15 c.G2238T p.G746G GTTCGGGGTTCTA . 261 120 128 4 . 0 0 0 0 0 SALL2 6297 broad.mit.edu;bcgsc.ca 37 14 21992636 21992636 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SALL2-92 NM_005407 exon2 c.G1226A p.R409H GTAAAACGGTTTC . 548 12 290 1 . 8 8 0 0 0 REM2 161253 broad.mit.edu;bcgsc.ca 37 14 23355347 23355347 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . REM2-704 NM_173527 exon4 c.C634T p.R212W CTACTTCGGCTCC . 281 13 134 1 . 0 0 0 0 0 ACIN1 22985 bcgsc.ca 37 14 23549785 23549785 + Missense_Mutation SNP T T C rs3811182 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ACIN1-156 NM_001164814 exon6 c.A933G p.I311M TCTAGGTATCTCT . 249 7 122 2 T|0.511;C|0.489 20 20 0 0 0 EFS 10278 broad.mit.edu 37 14 23829997 23829997 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EFS-153 NM_005864 exon2 c.64delC p.Q22fs GCTCCTGGGGGGA . 213 9 84 0 . 0 0 0 0 0 MYH6 4624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 23859651 23859651 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYH6-94 NM_002471 exon26 c.G3347A p.R1116H TCGATGCGTGCCT . 103 39 23 0 . 0 0 0 0 0 AP1G2 8906 bcgsc.ca 37 14 24031492 24031495 + Splice_Site DEL CTTA CTTA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTTA - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . AP1G2-45 . . . . CCCCTTCTTACTT . 321 154 191 1 . 0 0 0 0 0 LRRC16B 90668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24538366 24538366 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LRRC16B-139 NM_138360 exon39 c.C4003T p.R1335W GGCCGGCGGACTG . 241 106 128 0 . 0 0 0 0 0 NYNRIN 57523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 24885257 24885258 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NYNRIN-3 NM_025081 exon9 c.4302_4303del p.1434_1435del CCGGGGCTCTCTG . 124 74 68 0 . 0 0 0 0 0 C14orf23 387978 bcgsc.ca 37 14 29261305 29261305 + RNA DEL A A - rs200251419 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C14orf23-23 . . . . AGCACTAAAAAAA . 152 83 72 9 -|0.667;AAC|0.333 0 0 0 0 0 INSM2 84684 broad.mit.edu 37 14 36004658 36004658 + Silent SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . INSM2-226 NM_032594 exon1 c.C1200A p.G400G TCAGGGCCCCTAC . 146 5 39 1 . 0 0 0 0 0 FBXO34 55030 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 55818555 55818555 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FBXO34-228 NM_017943 exon2 c.1447delT p.F483fs ATGTTGTTTTTTT . 197 78 106 0 . 0 0 0 0 0 SYNE2 23224 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 64596621 64596621 + Splice_Site SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SYNE2-164 NM_182914 exon75 c.14139+2T>C . TAGAGGTATGCCT . 230 95 91 2 . 0 0 0 0 0 ZBTB1 22890 broad.mit.edu 37 14 64989787 64989787 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZBTB1-91 NM_014950 exon2 c.1565delA p.Q522fs GTATCCAAAAAAA . 198 13 108 0 . 0 0 0 0 0 GPR68 8111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 91701094 91701094 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GPR68-91 NM_001177676 exon2 c.C301A p.L101M CGTACAGGAGGAT . 405 199 186 0 . 0 0 0 0 0 GSC 145258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95235475 95235475 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GSC-90 NM_173849 exon2 c.G435A p.S145S GGTGCGCGACAGC . 343 83 114 0 . 0 0 0 0 0 BDKRB2 624 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 96706741 96706741 + Missense_Mutation SNP G G A rs200693201 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BDKRB2-662 NM_000623 exon3 c.G76A p.A26T TTCAGCGCCGACA . 148 68 86 1 . 0 0 0 0 0 ADSSL1 122622 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105201420 105201420 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ADSSL1-515 NM_199165 exon2 c.C385T p.P129S CTGCTGCCCAGCG . 459 89 201 1 . 5 3 2 0 0 ADSSL1 122622 broad.mit.edu 37 14 105201447 105201447 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ADSSL1-515 NM_199165 exon2 c.G412A p.V138M AAGGCCGTGTCCT . 462 10 197 0 . 0 0 0 0 0 CEP170B 283638 broad.mit.edu 37 14 105352885 105352890 + In_Frame_Del DEL GCAGGA GCAGGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001112726 exon12 c.2309_2314del p.770_772del GCAGACGCAGGAG . 24 10 6 0 . 0 0 0 0 0 APBA2 321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 29393975 29393975 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . APBA2-90 NM_005503 exon9 c.C1512T p.F504F TGTGTTCGAGTCG . 308 132 132 0 . 0 0 0 0 0 RYR3 6263 ucsc.edu;bcgsc.ca 37 15 34080629 34080629 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RYR3-520 NM_001243996 exon67 c.C9800T p.P3267L TCTACCCCATGCT . 283 124 131 2 . 0 0 0 0 0 LPCAT4 254531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 34651423 34651423 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LPCAT4-90 NM_153613 exon14 c.C1480T p.R494X TGCCTCGAGAGGT . 93 48 41 0 . 29 22 7 0 0 SPRED1 161742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 38643332 38643332 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPRED1-1085 NM_152594 exon7 c.A802G p.K268E ATGTGGAAAAATG . 171 29 83 0 . 11 7 4 0 0 RASGRP1 10125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 38786797 38786797 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RASGRP1-697 NM_005739 exon16 c.G2045A p.G682D TCACTGCCAATCC . 142 68 78 0 . 2 0 2 0 0 INO80 54617 broad.mit.edu 37 15 41337219 41337219 + Silent SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . INO80-72 NM_017553 exon24 c.C2790A p.R930R CCAGGAGCGTAGC . 97 5 46 1 . 14 12 2 0 0 SPTBN5 51332 bcgsc.ca 37 15 42169369 42169369 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPTBN5-91 NM_016642 exon18 c.G3551A p.G1184D GTGAAACCATCCA . 656 620 351 4 . 0 0 0 0 0 B2M 567 hgsc.bcm.edu 37 15 45003781 45003782 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . B2M-93 NM_004048 exon1 c.37_38del p.13_13del GCGCTACTCTCTC . 201 177 65 2 . 0 0 0 0 0 SPATA5L1 79029 hgsc.bcm.edu 37 15 45695445 45695445 + Missense_Mutation SNP C C G rs143453038 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPATA5L1-94 NM_024063 exon1 c.C818G p.S273C AGGGTTCCCGGCC . 15 14 2 0 C|0.982;G|0.018 3 0 3 0 0 WDR72 256764 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 53908071 53908071 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . WDR72-92 NM_182758 exon15 c.2332delA p.M778fs GCTGCATTTTTTT . 130 23 69 0 . 0 0 0 0 0 MNS1 55329 hgsc.bcm.edu 37 15 56736723 56736723 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MNS1-91 NM_018365 exon5 c.605delA p.K202fs TCCTGCTTTTTTT . 94 42 36 0 . 0 0 0 0 0 SLTM 79811 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 59182525 59182526 + Frame_Shift_Del DEL TC TC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLTM-91 NM_024755 exon15 c.2033_2034del p.678_678del TTCCATTCTCTCT . 136 27 83 0 . 0 0 0 0 0 NR2E3 10002 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 15 72105935 72105935 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NR2E3-22 NM_016346 exon7 c.C953T p.T318M CCCCCACGGAGTT . 131 46 31 0 . 0 0 0 0 0 PML 5371 broad.mit.edu;bcgsc.ca 37 15 74315257 74315257 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PML-1083 NM_033250 exon3 c.G691A p.A231T ATCAGCGCAGAGA . 193 7 71 0 . 13 12 1 0 0 PML 5371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74315308 74315308 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PML-1083 NM_033250 exon3 c.C742T p.Q248X GCGCTGCAGGAGC . 133 57 37 0 . 2 2 0 0 0 C15orf37 283687 hgsc.bcm.edu;broad.mit.edu 37 15 80215495 80215495 + RNA DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . . . . . TCTCCTCCCCCTC . 37 16 16 0 . 0 0 0 0 0 KIAA1199 57214 broad.mit.edu 37 15 81201549 81201549 + Missense_Mutation SNP G G A rs200544972 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIAA1199-93 NM_018689 exon13 c.G1699A p.E567K GTAGACGAAAGGG . 338 8 167 0 G|0.999;A|0.001 0 0 0 0 0 KIAA1199 57214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81218052 81218052 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIAA1199-93 NM_018689 exon18 c.C2376T p.H792H GGACCACGGGGCC . 170 159 64 0 . 0 0 0 0 0 KIF7 374654 hgsc.bcm.edu 37 15 90171910 90171910 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIF7-523 NM_198525 exon19 c.3772delG p.A1258fs GGGGGGCCCCCTC . 113 19 49 2 . 0 0 0 0 0 KIF7 374654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 90192528 90192528 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIF7-523 NM_198525 exon4 c.C600T p.N200N CGCCGCGTTGCCC . 152 80 33 0 . 0 0 0 0 0 TPSAB1 7177 broad.mit.edu 37 16 1291287 1291287 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TPSAB1-22 NM_003294 exon3 c.C195T p.H65H CATCCACCCCCAG . 214 7 120 0 . 0 0 0 0 0 TELO2 9894 hgsc.bcm.edu 37 16 1544462 1544462 + Silent SNP G G T rs146829780 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TELO2-90 NM_016111 exon2 c.G180T p.S60S CTTCTCGCCTGTC . 107 6 96 0 G|1.000;C|0.000 18 18 0 0 0 IFT140 9742 broad.mit.edu;bcgsc.ca 37 16 1608017 1608017 + Missense_Mutation SNP C C A rs140458893 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . IFT140-95 NM_014714 exon19 c.G2318T p.R773L GCGTCCCGGGTGG . 157 8 125 2 C|1.000;T|0.000 1 1 0 0 0 DNAJA3 9093 ucsc.edu;bcgsc.ca 37 16 4496977 4496977 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DNAJA3-291 NM_001135110 exon8 c.G1087A p.A363T GGTACAGCCAGAG . 149 137 166 3 . 0 0 0 0 0 SMG1 23049 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 18864971 18864974 + Frame_Shift_Del DEL GAGT GAGT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 GAGT GAGT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SMG1-1160 NM_015092 exon31 c.4699_4702del p.1567_1568del CTATTAGAGTGAG . 222 87 123 0 . 0 0 0 0 0 GPR139 124274 broad.mit.edu 37 16 20043749 20043749 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GPR139-92 NM_001002911 exon2 c.A370G p.I124V TGTCAATGGTTAA . 417 11 215 0 . 0 0 0 0 0 VWA3A 146177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 22128481 22128481 + Missense_Mutation SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . VWA3A-1 NM_173615 exon11 c.A974T p.Y325F ACTGCTACAGCCC . 357 161 151 0 . 0 0 0 0 0 GTF3C1 2975 broad.mit.edu 37 16 27512657 27512657 + Missense_Mutation SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GTF3C1-94 NM_001520 exon12 c.A1916C p.K639T ATCATCTTCTGAA . 312 7 183 0 . 0 0 0 0 0 APOBR 55911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 28509449 28509449 + Silent SNP C C T rs186642005 by1000genomes TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . APOBR-90 NM_018690 exon3 c.C3003T p.R1001R GAGTCGCGTGCAC . 34 15 13 0 C|0.999;T|0.000 1 1 0 0 0 ATP2A1 487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28909569 28909569 + Missense_Mutation SNP G G A rs200092983 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ATP2A1-93 NM_004320 exon14 c.G1561A p.V521I GAGGGCGTCATCG . 120 50 71 0 G|0.999;A|0.001 2 2 0 0 0 INO80E 283899 hgsc.bcm.edu 37 16 30007665 30007665 + Frame_Shift_Del DEL A A - rs34220380 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . INO80E-91 NM_173618 exon1 c.34delA p.K12fs GACTACAAAAAAA . 455 12 180 2 . 0 0 0 0 0 SRCAP 10847 hgsc.bcm.edu;bcgsc.ca 37 16 30736371 30736371 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SRCAP-94 NM_006662 exon25 c.5626delC p.P1876fs CGCCAGCCCCCCC . 93 44 48 1 . 0 0 0 0 0 BCL7C 9274 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 30904237 30904238 + Frame_Shift_Del DEL TC TC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BCL7C-227 NM_004765 exon3 c.203_204del p.68_68del ACGGGATCTCTCT . 47 22 24 0 . 0 0 0 0 0 WDR59 79726 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 74937919 74937919 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . WDR59-92 NM_030581 exon18 c.C1792T p.R598C ATAAACGAAGGTT . 73 60 100 1 . 6 1 5 0 0 PKD1L2 114780 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 81164209 81164209 + RNA SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PKD1L2-92 . . . . CTGCCCGTAGGCC . 123 50 116 0 . 0 0 0 0 0 ZZEF1 23140 bcgsc.ca 37 17 3926110 3926110 + Missense_Mutation SNP C C G rs711177 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZZEF1-93 NM_015113 exon44 c.G7105C p.E2369Q TCTCCTCAAAACC . 136 5 141 0 C|0.870;G|0.130 0 0 0 0 0 SMTNL2 342527 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 4497117 4497119 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SMTNL2-90 NM_001114974 exon4 c.731_733del p.244_245del CCACAGAGAAGAA . 69 16 79 0 . 0 0 0 0 0 ACAP1 9744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7251702 7251702 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ACAP1-153 NM_014716 exon17 c.G1586A p.R529Q GAGGGCGAAGAGG . 88 77 72 0 . 0 0 0 0 0 NLGN2 57555 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 7318830 7318830 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NLGN2-90 NM_020795 exon6 c.C1038T p.R346R CCCCAGCTACCAC . 224 12 160 0 . 0 0 0 0 0 SHISA6 388336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 11461177 11461177 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SHISA6-67 NM_207386 exon6 c.G1212A p.P404P GAAGCCGTTGCCA . 128 113 107 0 . 0 0 0 0 0 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 12649333 12649333 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYOCD-93 NM_001146312 exon9 c.A1069G p.T357A GGACAAACTGGTG . 98 94 75 0 . 0 0 0 0 0 TMEM97 27346 hgsc.bcm.edu;broad.mit.edu 37 17 26653807 26653807 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM97-90 NM_014573 exon3 c.519delA p.R173fs GAAAAGAAAAAAA . 30 23 19 0 . 0 0 0 0 0 SLFN12 55106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33747391 33747391 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLFN12-91 NM_018042 exon3 c.G1049A p.S350N TATGAACTGGAAA . 73 59 87 0 . 1 0 1 0 0 C17orf66 256957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 34191866 34191866 + Missense_Mutation SNP T T A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C17orf66-155 NM_152781 exon4 c.A349T p.I117F TTTTGATGTGGGT . 241 215 233 0 . 0 0 0 0 0 KRTAP4-6 81871 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39296288 39296288 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_030976 exon1 c.G452A p.R151H GAGGGGCGGCAGC . 197 81 69 2 . 0 0 0 0 0 KRTAP16-1 100505753 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 39463994 39463994 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001146182 exon1 c.C1512T p.A504A TGCTGCGGCCTCA . 34 29 33 0 . 0 0 0 0 0 MPP3 4356 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 41879215 41879215 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MPP3-91 NM_001932 exon20 c.G1612A p.A538T AGGCGGCAGAAGC . 50 44 46 1 . 0 0 0 0 0 MAP3K14 9020 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 43347830 43347830 + RNA SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MAP3K14-1453 . . . . GACACGCGGTGGA . 143 70 66 0 . 7 0 7 0 0 HOXB13 10481 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 46805884 46805884 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HOXB13-514 NM_006361 exon1 c.72delG p.G24fs ATTCCGCCCCCCT . 133 111 122 0 . 0 0 0 0 0 NGFR 4804 hgsc.bcm.edu 37 17 47583762 47583762 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NGFR-947 NM_002507 exon3 c.G310A p.D104N GCCGACGACGCCG . 13 11 0 0 . 0 0 0 0 0 PCTP 58488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 53851112 53851112 + Missense_Mutation SNP C C G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PCTP-91 NM_021213 exon4 c.C367G p.L123V CGAGACCTGGACA . 158 143 137 0 . 4 0 4 0 0 ANKFN1 162282 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 54543810 54543810 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ANKFN1-136 NM_153228 exon14 c.G1660A p.E554K GAGGTGGAGATGC . 191 10 168 0 . 0 0 0 0 0 PRKCA 5578 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 64731690 64731690 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PRKCA-1404 NM_002737 exon10 c.C1140T p.D380D TGATGACGTGGAG . 249 228 276 2 . 4 0 4 0 0 DNAH17 8632 bcgsc.ca 37 17 76497920 76497920 + Missense_Mutation SNP C C A rs690844 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DNAH17-142 NM_173628 exon34 c.G5226T p.M1742I GTTCCCCATGAGC . 120 5 122 1 C|0.273;A|0.727 0 0 0 0 0 RPTOR 57521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 78933974 78933974 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RPTOR-847 NM_020761 exon30 c.G3574A p.V1192I ATCCGCGTCTACG . 211 44 203 0 . 13 9 4 0 0 RAB40B 10966 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80616520 80616520 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RAB40B-227 NM_006822 exon5 c.A412G p.T138A GCTCCGTGGGCAC . 80 56 63 1 . 6 0 6 0 0 MPPE1 65258 broad.mit.edu 37 18 11889445 11889445 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MPPE1-90 NM_001242904 exon4 c.C435A p.H145Q ACTTGGGTGTCTG . 83 4 91 0 . 18 18 0 0 0 ABHD3 171586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 19244151 19244151 + Missense_Mutation SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ABHD3-90 NM_138340 exon5 c.A596C p.E199A ACTGTCTCCAAGT . 79 68 89 0 . 2 0 2 0 0 ZNF521 25925 broad.mit.edu;bcgsc.ca 37 18 22806811 22806811 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF521-275 NM_015461 exon4 c.G1071A p.T357T TGGAGTCGTACTG . 73 5 68 1 . 13 13 0 0 0 SLC39A6 25800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 33706547 33706547 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC39A6-92 NM_012319 exon2 c.C424T p.R142X CTTTTCGCTTATT . 234 203 221 1 . 3 0 3 0 0 FHOD3 80206 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 34289245 34289245 + Silent SNP C C T rs141915411 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FHOD3-139 NM_025135 exon15 c.C1899T p.N633N GCAGAACGAGGGG . 226 196 209 2 C|0.999;T|0.000 13 0 13 0 0 PIAS2 9063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 44470593 44470593 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PIAS2-662 NM_173206 exon2 c.449delA p.N150fs GGCAGATTTTTTA . 277 241 260 0 . 0 0 0 0 0 ADNP2 22850 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 77893731 77893732 + Frame_Shift_Del DEL TA TA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TA TA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ADNP2-140 NM_014913 exon4 c.435_436del p.145_146del TGAAACTAAATCA . 103 94 110 0 . 0 0 0 0 0 LMNB2 84823 ucsc.edu;bcgsc.ca 37 19 2438488 2438488 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LMNB2-290 NM_032737 exon3 c.G443A p.R148H TTCACACGGCCCT . 806 359 320 2 . 3 1 2 0 0 MFSD12 126321 broad.mit.edu 37 19 3547501 3547501 + Silent SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001042680 exon5 c.C882A p.S294S GGTCTGGGACAGG . 610 10 308 0 . 48 48 0 0 0 MFSD12 126321 hgsc.bcm.edu 37 19 3547981 3547981 + Silent SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001042680 exon4 c.A702C p.L234L GTGGAATAGCAGT . 11 9 2 0 . 47 29 18 0 0 CHAF1A 10036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 4409751 4409751 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CHAF1A-92 NM_005483 exon3 c.C955T p.R319C CCCCTCCGCAGAG . 117 49 79 0 . 0 0 0 0 0 KDM4B 23030 hgsc.bcm.edu 37 19 5151503 5151503 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KDM4B-226 NM_015015 exon23 c.G3272T p.R1091L AGGGCCGGCCCGG . 43 5 9 0 . 27 27 0 0 0 FUT6 2528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 5831871 5831871 + Silent SNP C C T rs141754965 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FUT6-90 NM_000150 exon3 c.G708A p.T236T GGACAGCGTCTCC . 663 282 325 1 C|1.000;T|0.000 0 0 0 0 0 PSPN 5623 bcgsc.ca 37 19 6375624 6375624 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PSPN-91 NM_004158 exon2 c.C152T p.T51I CGGTGGGTGCCTG . 407 200 132 4 . 6 4 2 0 0 VAV1 7409 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6822269 6822269 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . VAV1-1276 NM_005428 exon5 c.G487A p.V163M GACTGCGTGGAGA . 411 54 148 1 . 0 0 0 0 0 PNPLA6 10908 hgsc.bcm.edu;broad.mit.edu 37 19 7605851 7605851 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PNPLA6-47 NM_001166111 exon9 c.C865T p.R289W GCGGCCCGGGACT . 203 14 40 0 . 10 10 0 0 0 TIMM44 10469 broad.mit.edu 37 19 7998852 7998852 + Missense_Mutation SNP C C T rs147925283 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TIMM44-91 NM_006351 exon6 c.G580A p.V194I CCAGGACGCTGTC . 109 4 56 0 C|0.999;T|0.001 84 83 1 0 0 FBN3 84467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8206917 8206917 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FBN3-100 NM_032447 exon6 c.C646T p.R216C AGGCACGGCCCAC . 163 50 99 0 . 0 0 0 0 0 MYO1F 4542 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 8587291 8587291 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYO1F-93 NM_012335 exon27 c.G3190A p.V1064M CGTTCACGTTGAA . 259 13 91 0 . 4 4 0 0 0 ICAM1 3383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10394443 10394443 + Silent SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ICAM1-91 NM_000201 exon3 c.C618A p.P206P GGCCCCCTACCAG . 100 39 57 0 . 2 2 0 0 0 S1PR5 53637 broad.mit.edu;bcgsc.ca 37 19 10624719 10624719 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . S1PR5-523 NM_030760 exon2 c.C969A p.C323X GCGTCCGCAGCAG . 193 6 44 0 . 0 0 0 0 0 TMED1 11018 broad.mit.edu 37 19 10946806 10946806 + Missense_Mutation SNP A A C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMED1-155 NM_006858 exon1 c.T62G p.V21G CCTCCCACCTCCA . 155 30 55 5 . 10 10 0 0 0 LPHN1 22859 hgsc.bcm.edu;bcgsc.ca 37 19 14272167 14272167 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LPHN1-523 NM_001008701 exon7 c.G1482A p.Q494Q GCCCTGCTGGGTG . 142 64 34 0 . 4 1 3 0 0 CD97 976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14515325 14515325 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CD97-570 NM_078481 exon13 c.G1580A p.C527Y GCCAATGCAGCCA . 261 54 101 0 . 1 1 0 0 0 EMR2 30817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14854448 14854448 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EMR2-524 NM_013447 exon19 c.T2332C p.Y778H GGCAGTACACCAG . 454 87 245 0 . 0 0 0 0 0 AKAP8 10270 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 15484604 15484604 + Missense_Mutation SNP G G A rs140271912 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . AKAP8-290 NM_005858 exon4 c.C364T p.R122W TCTCCCGGTCCTG . 78 35 37 0 G|1.000;A|0.000 0 0 0 0 0 OR10H5 284433 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15905080 15905080 + Silent SNP C C T rs201176627 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . OR10H5-69 NM_001004466 exon1 c.C222T p.T74T CTACACCGTGGCC . 766 330 338 3 C|0.999;T|0.001 0 0 0 0 0 SLC5A5 6528 broad.mit.edu;bcgsc.ca 37 19 17994831 17994831 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC5A5-93 NM_000453 exon12 c.C1502T p.A501V TCCCTGCTAACGA . 162 76 68 2 . 0 0 0 0 0 ARRDC2 27106 broad.mit.edu 37 19 18119374 18119374 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ARRDC2-91 NM_015683 exon1 c.C255T p.R85R CCACCGCGCCACG . 30 4 16 0 . 12 10 2 0 0 TMEM161A 54929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19243492 19243492 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM161A-154 NM_001256766 exon4 c.G260T p.C87F AGGGGGCAGGTCT . 119 20 59 0 . 152 122 30 0 0 SLC7A10 56301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33706703 33706703 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC7A10-91 NM_019849 exon2 c.G328A p.V110I CTGTGACGTAGGC . 158 36 85 0 . 0 0 0 0 0 COX6B1 1340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36145482 36145482 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . COX6B1-226 NM_001863 exon3 c.G116A p.R39H TCCACCGCTGTCA . 301 57 167 0 . 0 0 0 0 0 MLL4 8085 hgsc.bcm.edu;broad.mit.edu 37 19 36223002 36223002 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL4-697 NM_014727 exon27 c.5631delG p.L1877fs GCCCTTGGGGGGT . 40 10 33 0 . 0 0 0 0 0 LRFN3 79414 hgsc.bcm.edu 37 19 36431134 36431134 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LRFN3-90 NM_024509 exon2 c.C807T p.L269L CGACCTCGAGGCC . 18 5 4 0 . 12 12 0 0 0 ZNF529 57711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37038306 37038306 + Missense_Mutation SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF529-67 NM_001145649 exon6 c.A1154C p.Q385P ATTCTCTGATGAC . 102 57 49 0 . 1 1 0 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38939333 38939333 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RYR1-100 NM_001042723 exon11 c.1002delC p.G334fs CATGGGCCCCCCT . 344 136 166 0 . 0 0 0 0 0 RYR1 6261 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39018334 39018334 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RYR1-100 NM_000540 exon73 c.C10734T p.G3578G CCGGGGCGTCCCG . 374 195 161 1 . 0 0 0 0 0 FBXO27 126433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39521937 39521937 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FBXO27-227 NM_178820 exon3 c.C388T p.Q130X CGTGTTGCACCAT . 269 50 142 0 . 0 0 0 0 0 FCGBP 8857 ucsc.edu;bcgsc.ca 37 19 40362754 40362754 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FCGBP-98 NM_003890 exon32 c.G15316A p.V5106M CGGCCACGCCAGC . 509 241 172 3 . 2 1 1 0 0 PRX 57716 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40900691 40900691 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PRX-92 NM_181882 exon7 c.G3568A p.V1190M GGGTCACCTGGGG . 225 107 87 1 . 12 6 6 0 0 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42914911 42914913 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LIPE-154 NM_005357 exon2 c.965_967del p.322_323del GGCTCGAGAAGAA . 82 70 51 0 . 0 0 0 0 0 PSG6 5675 hgsc.bcm.edu 37 19 43421937 43421937 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PSG6-92 NM_001031850 exon1 c.C8T p.P3L GAGAGGGGTCCCA . 65 5 27 0 . 0 0 0 0 0 NKPD1 284353 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 45655516 45655516 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NKPD1-68 NM_198478 exon4 c.G2179A p.A727T AGTCGGCGCCCAG . 165 27 34 0 . 0 0 0 0 0 ERCC1 2067 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 45922382 45922382 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ERCC1-659 NM_001983 exon5 c.C499T p.R167W GGACCCGCAAGGC . 73 25 40 1 . 81 59 22 0 0 GRIN2D 2906 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 48918195 48918195 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GRIN2D-156 NM_000836 exon6 c.C1487T p.A496V GGCTGGCGCATAC . 335 136 160 0 . 0 0 0 0 0 SCAF1 58506 hgsc.bcm.edu 37 19 50156709 50156711 + In_Frame_Del DEL GGA GGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 GGA GGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SCAF1-68 NM_021228 exon7 c.3063_3065del p.1021_1022del TGGGGCGGAGGAG . 86 37 33 1 . 0 0 0 0 0 MED25 81857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50333113 50333113 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MED25-91 NM_030973 exon6 c.596delC p.A199fs AGGCAGCCCCCCC . 240 29 122 0 . 0 0 0 0 0 PTOV1 53635 hgsc.bcm.edu;bcgsc.ca 37 19 50360301 50360303 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PTOV1-226 NM_017432 exon6 c.628_630del p.210_210del TCGTCCAAGAAGA . 337 144 163 1 . 0 0 0 0 0 LRRC4B 94030 hgsc.bcm.edu 37 19 51051969 51051969 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LRRC4B-205 NM_001080457 exon2 c.G127A p.V43M ACGTCACGGCCAC . 14 7 1 0 . 1 0 1 0 0 ZNF841 284371 broad.mit.edu;bcgsc.ca 37 19 52568564 52568564 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001136499 exon7 c.G2571A p.A857A CCCAAACGCCTTG . 320 10 145 0 . 2 2 0 0 0 ZNF160 90338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53577421 53577421 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF160-90 NM_001102603 exon6 c.G243A p.T81T TTCCGGCGTTCTT . 175 83 85 0 . 0 0 0 0 0 SSC5D 284297 hgsc.bcm.edu 37 19 56029616 56029616 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001144950 exon14 c.C3973A p.P1325T CCTCACCCCACAA . 92 3 43 0 . 0 0 0 0 0 ZNF444 55311 hgsc.bcm.edu 37 19 56658405 56658405 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF444-90 NM_001253792 exon3 c.G125A p.R42H TGCTCCGCGCCCT . 9 8 2 0 . 15 9 6 0 0 ZNF211 10520 hgsc.bcm.edu;bcgsc.ca 37 19 58153343 58153345 + In_Frame_Del DEL ATT ATT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 ATT ATT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF211-92 NM_001265597 exon5 c.1684_1686del p.562_562del AACCTCATTAAAC . 213 104 99 0 . 0 0 0 0 0 TAF1B 9014 hgsc.bcm.edu;bcgsc.ca 37 2 10059788 10059788 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TAF1B-92 NM_005680 exon14 c.1404delA p.G468fs TGCTGGAAAAAAA . 164 33 141 1 . 0 0 0 0 0 GRHL1 29841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 10105471 10105471 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GRHL1-92 NM_198182 exon8 c.C1071T p.N357N GTATAACGCCATT . 73 67 74 0 . 0 0 0 0 0 LOXL3 84695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74779681 74779681 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LOXL3-226 NM_032603 exon2 c.G81A p.P27P AGGGGACGGAGAC . 175 16 142 0 . 0 0 0 0 0 HK2 3099 ucsc.edu;bcgsc.ca 37 2 75105940 75105940 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HK2-252 NM_000189 exon9 c.G1157A p.C386Y GCCTGTGCGCAGC . 346 133 142 2 . 0 0 0 0 0 CAPG 822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 85628351 85628351 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CAPG-204 NM_001256140 exon5 c.C453T p.T151T CCGCTCGGTGGCA . 183 161 195 0 . 5 5 0 0 0 CAPG 822 ucsc.edu;bcgsc.ca 37 2 85628769 85628769 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CAPG-204 NM_001256140 exon4 c.C234T p.A78A CAGCACGGCACAG . 141 123 113 2 . 5 5 0 0 0 ZAP70 7535 broad.mit.edu 37 2 98354472 98354472 + Silent SNP G G A rs115143372 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZAP70-955 NM_001079 exon13 c.G1638A p.P546P AGGGCCGGAGGTC . 194 4 223 0 G|0.999;A|0.001 0 0 0 0 0 NPHP1 4867 broad.mit.edu;bcgsc.ca 37 2 110962528 110962528 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NPHP1-92 NM_207181 exon1 c.G18A p.Q6Q ATCTCGCTGTCGT . 183 62 89 2 . 8 5 3 0 0 MAP3K19 80122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 135738728 135738728 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_025052 exon9 c.A3583G p.M1195V TTGGCATGAGCAT . 56 51 48 0 . 0 0 0 0 0 PLA2R1 22925 bcgsc.ca 37 2 160869814 160869814 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PLA2R1-93 NM_001195641 exon10 c.G1624A p.G542S AATAACCGCTGGA . 70 4 53 0 . 3 3 0 0 0 SLC40A1 30061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 190430180 190430180 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC40A1-91 NM_014585 exon6 c.C660T p.Y220Y CAGAACGTACTCC . 130 106 114 0 . 0 0 0 0 0 ORMDL1 94101 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 190640321 190640321 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ORMDL1-68 NM_016467 exon4 c.G296A p.R99Q AACTTCCGTGAAG . 69 20 64 1 . 37 26 11 0 0 EEF1B2 1933 broad.mit.edu 37 2 207025358 207025358 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EEF1B2-227 NM_021121 exon3 c.A127G p.S43G GTGTCCAGCCCAC . 160 4 174 1 . 438 436 1 1 0 EEF1B2 1933 broad.mit.edu 37 2 207025366 207025366 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EEF1B2-227 NM_021121 exon3 c.G135A p.P45P CCCACCGCCTGCC . 168 4 168 1 . 364 364 0 0 0 SPEG 10290 broad.mit.edu 37 2 220354177 220354177 + Missense_Mutation SNP A A C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPEG-383 NM_005876 exon36 c.A8437C p.T2813P GCCCCCACACCCC . 28 3 26 2 . 0 0 0 0 0 DNAJB3 414061 hgsc.bcm.edu;bcgsc.ca 37 2 234652188 234652188 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001001394 exon1 c.375delG p.G125fs CTCTGACCCCCCC . 74 61 117 0 . 0 0 0 0 0 SH3BP4 23677 broad.mit.edu 37 2 235949696 235949696 + Missense_Mutation SNP G G A rs199774203 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SH3BP4-94 NM_014521 exon4 c.G283A p.A95T TGGTACGCACACA . 305 10 277 1 G|0.999;A|0.000 11 11 0 0 0 ANO7 50636 bcgsc.ca 37 2 242148703 242148703 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ANO7-92 NM_001001891 exon12 c.G1243A p.G415S CAGGCCGGCCGGC . 63 4 62 0 . 0 0 0 0 0 NOP56 10528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2637510 2637510 + Missense_Mutation SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NOP56-92 NM_006392 exon10 c.A1250T p.N417I GAAAGAATCTGGA . 304 138 128 0 . 101 56 45 0 0 VSX1 30813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 25052585 25052585 + Missense_Mutation SNP G G T rs149938697 by1000genomes;alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . VSX1-90 NM_001256272 exon5 c.C878A p.P293Q CACCACGGGGTCT . 166 86 79 0 G|0.998;A|0.002 0 0 0 0 0 ID1 3397 hgsc.bcm.edu 37 20 30193226 30193226 + Silent SNP C C G rs11545368 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ID1-651 NM_002165 exon1 c.C36G p.A12A CGCCGCCGCGGGC . 8 5 1 0 C|0.993;G|0.007 1 0 1 0 0 E2F1 1869 broad.mit.edu;bcgsc.ca 37 20 32266084 32266084 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . E2F1-838 NM_005225 exon4 c.C648T p.S216S CTGCTCGCTCTCC . 369 10 168 0 . 22 22 0 0 0 GSS 2937 hgsc.bcm.edu 37 20 33519853 33519855 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GSS-93 NM_000178 exon10 c.916_918del p.306_306del CTGCACCTTCTTA . 550 257 247 4 . 0 0 0 0 0 MIR298 100126296 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57393302 57393302 + RNA SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . . . . . AAAGCAGCAGGCT . 350 160 202 1 . 0 0 0 0 0 NELFCD 51497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57568155 57568155 + Silent SNP G G A rs141996345 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_198976 exon11 c.G1386A p.A462A CCTGGCGTTGCTG . 639 152 315 0 G|0.999;A|0.001 6 6 0 0 0 ZNF831 128611 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 57769225 57769225 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF831-126 NM_178457 exon1 c.G3151A p.A1051T AGGGAGGCTACCT . 139 67 73 1 . 0 0 0 0 0 PHACTR3 116154 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 58342325 58342325 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PHACTR3-93 NM_080672 exon5 c.C626A p.A209D CCTTAGCTGGGGC . 357 23 170 0 . 0 0 0 0 0 CABLES2 81928 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60966048 60966048 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CABLES2-91 NM_031215 exon10 c.G1416T p.R472S GAGGCGCCTGTAA . 239 125 112 1 . 1 0 1 0 0 COL20A1 57642 broad.mit.edu 37 20 61938844 61938844 + Missense_Mutation SNP G G A rs201827276 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . COL20A1-90 NM_020882 exon6 c.G499A p.G167S CCAGCCGGCCCCC . 129 4 36 0 . 0 0 0 0 0 COL20A1 57642 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 61944185 61944185 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . COL20A1-90 NM_020882 exon16 c.C1975T p.P659S GAGCTGCCAGGGG . 276 121 137 1 . 0 0 0 0 0 BACH1 571 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 30701923 30701925 + In_Frame_Del DEL GAA GAA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 GAA GAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BACH1-92 NM_206866 exon4 c.1685_1687del p.562_563del ATATTCGAAGAAG . 232 107 100 0 . 0 0 0 0 0 TIAM1 7074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 32638636 32638636 + Missense_Mutation SNP G G A rs202148756 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TIAM1-724 NM_003253 exon5 c.C653T p.A218V GGACTCGCCCGCG . 145 72 70 0 G|0.999;A|0.001 0 0 0 0 0 UMODL1 89766 broad.mit.edu 37 21 43531700 43531700 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . UMODL1-93 NM_173568 exon11 c.C2368A p.R790S GCCACCCGTTCCA . 225 5 134 0 . 0 0 0 0 0 CCT8L2 150160 ucsc.edu;bcgsc.ca 37 22 17072883 17072883 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CCT8L2-69 NM_014406 exon1 c.C558T p.H186H GCAGGCGTGGGCC . 180 166 146 2 . 0 0 0 0 0 LZTR1 8216 broad.mit.edu 37 22 21343966 21344002 + In_Frame_Del DEL GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LZTR1-280 NM_006767 exon7 c.646_651del p.216_217del TGCTGGGAGGAGG . 62 14 61 0 . 0 0 0 0 0 RAB36 9609 bcgsc.ca 37 22 23503121 23503121 + Silent SNP G G A rs5759611 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RAB36-228 NM_004914 exon10 c.G873A p.S291S GCAGTCGGTGCTG . 301 8 245 1 G|0.776;A|0.224 5 5 0 0 0 MIF 4282 hgsc.bcm.edu 37 22 24237074 24237074 + Missense_Mutation SNP C C T rs182012324 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MIF-514 NM_002415 exon2 c.C224T p.S75F ACCGCTCCTACAG . 5 5 4 0 C|0.999;T|0.000 837 9 827 0 1 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 28501523 28501523 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001145418 exon8 c.G3051A p.L1017L GTACTGCAGGGCT . 185 174 172 1 . 1 1 0 0 0 CHEK2 11200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29130427 29130427 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CHEK2-1515 NM_145862 exon2 c.C283T p.R95X ATAATCGAGCCCA . 49 47 61 0 . 0 0 0 0 0 XBP1 7494 broad.mit.edu 37 22 29191569 29191569 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . XBP1-290 NM_005080 exon5 c.C751T p.R251C GATGACGTCCCCA . 114 4 90 1 . 71 71 0 0 0 ZNRF3 84133 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 29445345 29445345 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNRF3-69 NM_001206998 exon8 c.1176delC p.N392fs CGGCAACCCCGTC . 165 146 117 0 . 0 0 0 0 0 CRELD2 79174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50319196 50319196 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CRELD2-90 NM_001135101 exon10 c.G1147A p.A383T CCGCCGGCAGAGG . 94 88 68 0 . 0 0 0 0 0 PLXNB2 23654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 50722344 50722344 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PLXNB2-211 NM_012401 exon14 c.C2339T p.A780V CACCACGCACACC . 88 75 34 0 . 24 0 24 0 0 PLXNB2 23654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 50722601 50722601 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PLXNB2-211 NM_012401 exon13 c.C2223T p.Y741Y CTTGACGTAGAGG . 71 65 48 0 . 32 1 31 0 0 SCO2 9997 bcgsc.ca 37 22 50962208 50962208 + Silent SNP T T G rs12148 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SCO2-226 NM_001169111 exon2 c.A633C p.A211A GGGGCCTGCATTG . 225 7 230 2 T|0.349;G|0.651 93 93 0 0 0 SETD5 55209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9516182 9516182 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SETD5-70 NM_001080517 exon21 c.A3547T p.K1183X ATCCCCAAGGTCC . 105 86 70 0 . 31 4 27 0 0 SLC6A11 6538 broad.mit.edu;bcgsc.ca 37 3 10858122 10858122 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SLC6A11-132 NM_014229 exon1 c.G172A p.E58K AAGGTGGAGTTCG . 291 10 172 0 . 0 0 0 0 0 STAC 6769 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 36570404 36570406 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . STAC-94 NM_003149 exon10 c.1037_1039del p.346_347del AAAATGAGAAGAT . 80 75 85 0 . 0 0 0 0 0 MLH1 4292 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 37042447 37042449 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLH1-2559 NM_000249 exon3 c.209_211del p.70_71del AACAGAAAGAAGA . 61 51 65 0 . 0 0 0 0 0 XIRP1 165904 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39230192 39230192 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . XIRP1-158 NM_001198621 exon2 c.G745A p.A249T GGATGGCGCCCTC . 57 45 47 0 . 0 0 0 0 0 SEMA3G 56920 broad.mit.edu 37 3 52476810 52476810 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SEMA3G-70 NM_020163 exon2 c.G229A p.A77T AGAGGGCGTCCAG . 211 4 172 0 . 1 1 0 0 0 PDZRN3 23024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 73432786 73432788 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTC CTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PDZRN3-232 NM_015009 exon10 c.2929_2931del p.977_977del CTTCCTCTCCTCC . 94 82 85 0 . 0 0 0 0 0 ITGB5 3693 broad.mit.edu;bcgsc.ca 37 3 124515279 124515279 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ITGB5-227 NM_002213 exon10 c.G1649A p.C550Y TTGTCGCACTCAC . 147 7 113 0 . 55 54 1 0 0 COL6A5 256076 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 130159651 130159651 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_153264 exon35 c.6469delT p.F2157fs AAGCCATTTTTAT . 77 33 54 0 . 0 0 0 0 0 SLC35G2 80723 hgsc.bcm.edu;broad.mit.edu 37 3 136573486 136573486 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_025246 exon2 c.184delA p.K62fs GAAATGAAAAAAA . 52 45 48 0 . 0 0 0 0 0 FXR1 8087 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 180666228 180666228 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FXR1-153 NM_001013438 exon5 c.364delA p.K122fs ACTGTCAAAAAAA . 75 60 54 0 . 0 0 0 0 0 EPHB3 2049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184299402 184299402 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EPHB3-1455 NM_004443 exon16 c.C2989A p.Q997K CCTGTGCAGGTCT . 124 107 130 0 . 2 1 1 0 0 FAM43A 131583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 194407766 194407766 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FAM43A-90 NM_153690 exon1 c.A211G p.T71A ACTTACACCGTGC . 351 310 279 1 . 4 4 0 0 0 MUC4 4585 bcgsc.ca 37 3 195505791 195505791 + Silent SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MUC4-90 NM_018406 exon2 c.T12660A p.G4220G GGCGTGACCTGTG . 326 34 283 4 . 0 0 0 0 0 MUC4 4585 bcgsc.ca 37 3 195505870 195505870 + Missense_Mutation SNP G G A rs201928034 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MUC4-90 NM_018406 exon2 c.C12581T p.P4194L GTGACAGGAAGAG . 316 21 251 6 . 0 0 0 0 0 MUC4 4585 bcgsc.ca 37 3 195510020 195510020 + Missense_Mutation SNP T T A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MUC4-90 NM_018406 exon2 c.A8431T p.T2811S GACCTGTGGACAC . 96 27 276 5 . 0 0 0 0 0 NELFA 7469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 1991593 1991593 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_005663 exon3 c.G419A p.G140D CACTCACCCACTG . 237 107 109 0 . 0 0 0 0 0 TRMT44 152992 hgsc.bcm.edu;bcgsc.ca 37 4 8470030 8470032 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_152544 exon9 c.1884_1886del p.628_629del AAACACAAGAAGT . 236 105 135 1 . 0 0 0 0 0 CPEB2 132864 hgsc.bcm.edu;broad.mit.edu 37 4 15067858 15067858 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CPEB2-91 NM_001177382 exon12 c.2959delT p.F987fs GCTCCCTTTTTTT . 446 15 170 0 . 0 0 0 0 0 FAM200B 285550 broad.mit.edu 37 4 15689832 15689832 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001145191 exon2 c.1232delA p.E411fs TCATTGAAAAAAA . 135 8 65 0 . 0 0 0 0 0 STIM2 57620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 27000929 27000929 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . STIM2-91 NM_001169118 exon5 c.G585A p.Q195Q ACTTCAGCTCAAG . 144 62 59 0 . 9 7 2 0 0 TLR6 10333 hgsc.bcm.edu;bcgsc.ca 37 4 38830935 38830935 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TLR6-524 NM_006068 exon2 c.160delA p.T54fs CTTTGGTTTTCAG . 171 83 79 1 . 0 0 0 0 0 FRYL 285527 bcgsc.ca 37 4 48592687 48592687 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FRYL-69 NM_015030 exon17 c.C1496A p.A499E ACTTTTGCTTCTT . 58 4 34 0 . 0 0 0 0 0 UGT2B15 7366 hgsc.bcm.edu 37 4 69536320 69536320 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . UGT2B15-46 NM_001076 exon1 c.C17T p.T6M ACTGACGTCCATT . 133 8 60 0 . 0 0 0 0 0 SHROOM3 57619 hgsc.bcm.edu 37 4 77662309 77662309 + Silent SNP C C T rs344143 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SHROOM3-93 NM_020859 exon5 c.C2983T p.L995L GGCGACCTGGCCA . 10 10 0 0 C|0.604;T|0.396 3 0 3 0 0 PRKG2 5593 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 82126123 82126123 + Missense_Mutation SNP G G A rs187350442 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PRKG2-524 NM_006259 exon1 c.C79T p.R27W TGTTCCGCAGAGC . 295 139 137 2 G|0.999;A|0.001 0 0 0 0 0 UNC5C 8633 hgsc.bcm.edu;bcgsc.ca 37 4 96140294 96140294 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . UNC5C-94 NM_003728 exon9 c.1471delC p.Q491fs CATCTTGGGGGGT . 450 214 149 0 . 0 0 0 0 0 AP1AR 55435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 113189441 113189441 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . AP1AR-90 NM_018569 exon10 c.A785G p.N262S GGGAAAATGATTT . 213 92 133 0 . 49 32 16 0 1 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 114276759 114276759 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ANK2-583 NM_001148 exon38 c.G6985A p.G2329S TGCACAGGCAGCT . 154 70 82 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 126369791 126369791 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FAT4-108 NM_024582 exon9 c.7620delA p.V2540fs GCATGTAAAAGAT . 259 115 105 0 . 0 0 0 0 0 NAA15 80155 hgsc.bcm.edu;bcgsc.ca 37 4 140291458 140291459 + Frame_Shift_Del DEL AA AA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AA AA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NAA15-92 NM_057175 exon15 c.1847_1848del p.616_616del ATGCAGAAAAAGA . 214 109 123 2 . 0 0 0 0 0 ZNF330 27309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 142143548 142143548 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF330-90 NM_014487 exon2 c.C23T p.A8V CTGGTGCGAGGAA . 333 160 164 0 . 52 23 29 0 0 DCLK2 166614 bcgsc.ca 37 4 151000382 151000384 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AGA - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DCLK2-300 NM_001040260 exon1 c.203_205del p.68_69del GCTCGGAGAAGAA . 665 0 297 4 . 0 0 0 0 0 TENM3 55714 hgsc.bcm.edu 37 4 183721231 183721231 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001080477 exon27 c.C7827T p.Y2609Y GCGCTACGGCATG . 13 5 3 0 . 1 0 1 0 0 ACSL1 2180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 185684335 185684335 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ACSL1-92 NM_001995 exon16 c.G1507A p.E503K CGCCCTCGGCAGC . 72 66 72 0 . 13 0 13 0 0 DNAH5 1767 bcgsc.ca 37 5 13766210 13766210 + Missense_Mutation SNP C C T rs149452082 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DNAH5-182 NM_001369 exon59 c.G9976A p.V3326I GCAGTACGCAATC . 192 114 97 2 C|1.000;A|0.000 0 0 0 0 0 AGXT2 64902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 34998917 34998917 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . AGXT2-94 NM_031900 exon14 c.G1452A p.A484A TGAGGGCGCAATG . 100 40 65 0 . 0 0 0 0 0 NUP155 9631 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 37348627 37348628 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NUP155-205 NM_153485 exon9 c.974_975del p.325_325del AGCAGCAGAGACA . 683 313 384 0 . 0 0 0 0 0 OSMR 9180 hgsc.bcm.edu;broad.mit.edu 37 5 38923329 38923329 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . OSMR-496 NM_003999 exon13 c.1843delA p.K615fs TTAGAGAAAAAAA . 62 11 37 0 . 0 0 0 0 0 ANXA2R 389289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 43039623 43039623 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001014279 exon1 c.G526A p.A176T AGAACGCGGCAAA . 219 119 112 0 . 5 3 1 1 0 SPATA9 83890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 94994526 94994526 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPATA9-90 NM_031952 exon5 c.G566T p.C189F TTTCTACAATTTT . 62 29 44 0 . 1 0 1 0 0 MCC 4163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 112720886 112720886 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MCC-69 NM_001085377 exon2 c.G194A p.R65H AGCTGGCGACAGA . 260 108 144 0 . 0 0 0 0 0 AQPEP 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 115335468 115335468 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_173800 exon7 c.1384delT p.F462fs GAGATCTTTTTTT . 200 92 102 0 . 0 0 0 0 0 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 127728872 127728872 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FBN2-146 NM_001999 exon10 c.C1421T p.A474V ACACCGGCTCCCC . 126 61 61 0 . 0 0 0 0 0 RAD50 10111 hgsc.bcm.edu 37 5 131931452 131931452 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RAD50-229 NM_005732 exon13 c.2157delA p.L719fs AGAGCTAAAAAAA . 74 24 40 1 . 0 0 0 0 0 PCDHA10 56139 bcgsc.ca 37 5 140237079 140237079 + Silent SNP C C T rs189056024 by1000genomes;alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PCDHA10-99 NM_031859 exon1 c.C1446T p.D482D CGCGGACGCGCAG . 987 432 247 4 C|0.999;A|0.000 2 0 2 0 0 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 167674716 167674716 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_001122679 exon27 c.G6745A p.G2249R AGACTCGGGGATG . 190 36 102 0 . 0 0 0 0 0 ERGIC1 57222 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 172315747 172315747 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ERGIC1-93 NM_001031711 exon2 c.G66A p.T22T GCCAACGTACACC . 346 133 165 1 . 62 34 28 0 0 CLTB 1212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 175824972 175824972 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CLTB-90 NM_001834 exon3 c.G311A p.R104H CACTTGCGGATGC . 239 39 122 0 . 386 315 71 0 0 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176687121 176687121 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NSD1-188 NM_022455 exon14 c.C5098T p.R1700X GGCTGCCGAAATC . 205 28 97 0 . 4 3 1 0 0 RASGEF1C 255426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179564923 179564923 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RASGEF1C-228 NM_175062 exon2 c.G130T p.E44X GTGTTTCCAGGGA . 388 66 170 0 . 0 0 0 0 0 EHMT2 10919 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31857309 31857311 + In_Frame_Del DEL TCT TCT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EHMT2-91 NM_025256 exon8 c.933_935del p.311_312del TCTTCCTCTTCTT . 52 10 74 0 . 0 0 0 0 0 TNXB 7148 hgsc.bcm.edu 37 6 32063513 32063514 + Frame_Shift_Del DEL AC AC - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 AC AC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TNXB-90 NM_019105 exon3 c.2116_2117del p.706_706del CCCTCTACACACA . 424 14 284 2 . 0 0 0 0 0 BTNL2 56244 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32370751 32370751 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BTNL2-90 NM_019602 exon3 c.G670A p.V224I TGAGGACGGGGTT . 182 159 178 2 . 0 0 0 0 0 HLA-DQB1 3119 bcgsc.ca 37 6 32628022 32628022 + Silent SNP A A G rs1140347 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HLA-DQB1-22 NM_001243961 exon6 c.T801C p.L267L GTGCAGAAGCCCT . 14 5 81 1 A|0.440;G|0.560 0 0 0 0 0 B3GALT4 8705 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33245779 33245779 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . B3GALT4-68 NM_003782 exon1 c.C583T p.R195C GGGGGCCGTTGGG . 125 111 101 1 . 15 2 13 0 0 DAXX 1616 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 33288228 33288232 + Frame_Shift_Del DEL TCTTT TCTTT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TCTTT TCTTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DAXX-731 NM_001141970 exon4 c.1212_1216del p.404_406del CTCTTCTCTTTTT . 48 41 62 0 . 0 0 0 0 0 KLHL31 401265 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 53519456 53519456 + Silent SNP C C A rs114605120 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KLHL31-23 NM_001003760 exon2 c.G615T p.S205S CTGATCCGATTCT . 56 48 71 0 C|0.999;T|0.001 0 0 0 0 0 FAXC 84553 broad.mit.edu;bcgsc.ca 37 6 99771340 99771340 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_032511 exon4 c.G803A p.R268Q AAAGACCGCATGT . 88 81 110 2 . 0 0 0 0 0 MARCKS 4082 broad.mit.edu 37 6 114181210 114181210 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MARCKS-90 NM_002356 exon2 c.454delA p.K152fs ACCCCGAAAAAAA . 7 6 6 0 . 0 0 0 0 0 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152751308 152751308 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SYNE1-607 NM_033071 exon36 c.C4748T p.A1583V GGAACAGCAAGTT . 119 109 137 0 . 0 0 0 0 0 PMS2 5395 broad.mit.edu;bcgsc.ca 37 7 6026767 6026767 + Silent SNP G G A rs111673299 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PMS2-1083 NM_000535 exon11 c.C1629T p.D543D AGAGTCGTCAGTT . 161 74 69 2 A|1.000;|0.000 3 0 3 0 0 TMEM196 256130 hgsc.bcm.edu;broad.mit.edu 37 7 19769017 19769017 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM196-22 NM_152774 exon2 c.192delA p.K64fs TCCTGATTTTTTT . 94 40 42 0 . 0 0 0 0 0 TNS3 64759 hgsc.bcm.edu;bcgsc.ca 37 7 47385878 47385878 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TNS3-94 NM_022748 exon18 c.2358delG p.G786fs CAGCTGCCCCCCA . 169 82 72 1 . 0 0 0 0 0 ABCA13 154664 bcgsc.ca;mdanderson.org 37 7 48311657 48311657 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ABCA13-521 NM_152701 exon17 c.C2394T p.N798N TGGCAACGAAGTG . 103 43 27 1 . 0 0 0 0 0 ZPBP 11055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50129273 50129273 + Missense_Mutation SNP G G A rs200921057 alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZPBP-90 NM_007009 exon2 c.C160T p.R54C TCAAGCGAAAAGC . 202 86 122 0 G|0.999;T|0.001 0 0 0 0 0 GTF2IRD1 9569 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 73944069 73944069 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GTF2IRD1-94 NM_001199207 exon9 c.G1192A p.A398T GCGGAAGCCCTGG . 112 24 50 0 . 0 0 0 0 0 DTX2 113878 broad.mit.edu 37 7 76112242 76112242 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DTX2-524 NM_001102596 exon2 c.686delA p.H229fs CCCAGCACCCCCC . 1156 9 496 0 . 0 0 0 0 0 DTX2 113878 hgsc.bcm.edu 37 7 76112249 76112249 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DTX2-524 NM_001102596 exon2 c.693delA p.P231fs CCCCCCACACAGG . 1177 243 501 2 . 0 0 0 0 0 TMEM60 85025 hgsc.bcm.edu;broad.mit.edu 37 7 77423460 77423460 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM60-90 NM_032936 exon2 c.231delA p.K77fs CCAGGCTTTTTTT . 127 51 61 0 . 0 0 0 0 0 ACHE 43 hgsc.bcm.edu 37 7 100491127 100491127 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ACHE-92 NM_000665 exon2 c.C727T p.H243Y GCAGGTGCATGCC . 46 26 6 0 . 2 2 0 0 0 THAP5 168451 hgsc.bcm.edu;broad.mit.edu 37 7 108205526 108205526 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . THAP5-68 NM_001130475 exon3 c.297delA p.K99fs CTGGGATTTTTTT . 71 25 39 0 . 0 0 0 0 0 PPP1R3A 5506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 113519565 113519565 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PPP1R3A-832 NM_002711 exon4 c.G1582T p.E528X GTTTTTCATTAAC . 61 10 53 0 . 0 0 0 0 0 KCP 375616 broad.mit.edu 37 7 128517759 128517759 + RNA SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCP-68 . . . . GCCTCACGCCTGG . 682 18 268 0 . 0 0 0 0 0 CPA1 1357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 130020366 130020366 + Missense_Mutation SNP G G A rs145988366 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CPA1-91 NM_001868 exon1 c.G5A p.R2Q GCATGCGGGGGTT . 53 34 31 0 G|1.000;A|0.000 0 0 0 0 0 CPA1 1357 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 130021521 130021521 + Silent SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CPA1-91 NM_001868 exon3 c.A198G p.R66R CGTCCGAGTGCCC . 288 127 99 1 . 0 0 0 0 0 EXOC4 60412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 132959896 132959896 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EXOC4-159 NM_021807 exon2 c.C246T p.R82R AGAGCGCATCACT . 362 148 159 0 . 9 5 4 0 0 PARP12 64761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139726084 139726084 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PARP12-525 NM_022750 exon11 c.G1693A p.G565S TGGTGCCGTGGAA . 167 90 86 0 . 32 18 14 0 0 MLL3 58508 broad.mit.edu;bcgsc.ca 37 7 151878058 151878058 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL3-1398 NM_170606 exon36 c.G6887A p.R2296H GGATCACGGGCAG . 424 11 174 0 . 3 3 0 0 0 MLL3 58508 broad.mit.edu 37 7 151879078 151879078 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MLL3-1398 NM_170606 exon36 c.C5867T p.S1956F GTCGTGGAAGAAG . 241 6 103 0 . 3 3 0 0 0 WDR60 55112 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 158738347 158738347 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . WDR60-92 NM_018051 exon25 c.G3078A p.A1026A CAGGGCGTCTGGC . 213 91 64 0 . 19 9 10 0 0 MYOM2 9172 bcgsc.ca 37 8 2021421 2021421 + Missense_Mutation SNP G G T rs2272720 byfrequency TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYOM2-95 NM_003970 exon10 c.G961T p.V321L TCAGACGTGCTGT . 154 5 100 0 G|0.687;T|0.313 0 0 0 0 0 DEFB135 613209 broad.mit.edu;bcgsc.ca 37 8 11839860 11839860 + Missense_Mutation SNP G G A rs141141605 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DEFB135-68 NM_001033017 exon1 c.G31A p.V11M GCCCTCGTGGTCC . 83 75 88 2 G|0.999;A|0.001 0 0 0 0 0 HOOK3 84376 ucsc.edu 37 8 42819577 42819577 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HOOK3-154 NM_032410 exon9 c.C739A p.L247I TTGCAGCTCCAGA . 45 4 47 0 . 2 2 0 0 0 ST18 9705 hgsc.bcm.edu;bcgsc.ca 37 8 53062482 53062482 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ST18-95 NM_014682 exon16 c.1862delA p.N621fs ATTCGATTTTTTT . 175 148 140 1 . 0 0 0 0 0 MYBL1 4603 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 67511292 67511294 + In_Frame_Del DEL TCT TCT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYBL1-395 NM_001080416 exon4 c.282_284del p.94_95del CTCTGATCTTCTT . 46 34 38 0 . 0 0 0 0 0 PABPC1 26986 broad.mit.edu 37 8 101724606 101724606 + Missense_Mutation SNP G G A rs202060459 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PABPC1-68 NM_002568 exon7 c.C956T p.T319I GTGATTGTACCAA . 116 3 117 1 . 352 351 0 1 0 UBR5 51366 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 103297940 103297940 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . UBR5-761 NM_015902 exon39 c.C5285A p.A1762D GCTGCAGCACTTG . 137 123 103 1 . 1 0 1 0 0 TYRP1 7306 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 12704553 12704553 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TYRP1-226 NM_000550 exon6 c.A1109G p.D370G AGTATGACCCTGC . 46 45 46 1 . 0 0 0 0 0 NUDT2 318 hgsc.bcm.edu 37 9 34339072 34339072 + Missense_Mutation SNP G G T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NUDT2-90 NM_147173 exon3 c.G35T p.R12L TCTTCCGAAGATG . 100 6 82 0 . 37 37 0 0 0 CCIN 881 hgsc.bcm.edu;broad.mit.edu 37 9 36170452 36170452 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CCIN-92 NM_005893 exon1 c.C953A p.A318E GGGCAGCAGCACT . 74 4 66 0 . 0 0 0 0 0 C9orf41 138199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77613553 77613553 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C9orf41-92 NM_152420 exon5 c.A871G p.M291V CTGTCATAGAAAA . 240 108 138 0 . 7 5 2 0 0 SECISBP2 79048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 91949587 91949587 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SECISBP2-93 NM_024077 exon7 c.C1031T p.A344V CTGAAGCTTTATC . 117 43 81 0 . 37 13 24 0 0 CDK5RAP2 55755 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 123290085 123290085 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CDK5RAP2-229 NM_018249 exon10 c.998delA p.K333fs CATACCTTTTTTT . 53 26 28 0 . 0 0 0 0 0 NR5A1 2516 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 127253373 127253375 + In_Frame_Del DEL GAT GAT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 GAT GAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . NR5A1-186 NM_004959 exon6 c.1123_1125del p.375_375del GAAGAGGATGATG . 240 106 98 0 . 0 0 0 0 0 GOLGA1 2800 ucsc.edu;bcgsc.ca 37 9 127674275 127674275 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GOLGA1-91 NM_002077 exon11 c.G874A p.V292I TGATAACGTCTTC . 214 117 106 2 . 11 7 4 0 0 GAPVD1 26130 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 128069806 128069806 + Missense_Mutation SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GAPVD1-93 NM_015635 exon5 c.T1231C p.Y411H ATAACCTACAGTC . 82 6 59 0 . 4 4 0 0 0 GOLGA2 2801 hgsc.bcm.edu;broad.mit.edu 37 9 131022875 131022875 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GOLGA2-91 NM_004486 exon17 c.1546delG p.E516fs CCTGCTCCCCCCA . 127 19 31 0 . 0 0 0 0 0 C9orf96 169436 hgsc.bcm.edu;bcgsc.ca 37 9 136262309 136262311 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C9orf96-334 NM_153710 exon10 c.885_887del p.295_296del CATCACCTTCTTG . 252 103 116 1 . 0 0 0 0 0 ADAMTS13 11093 broad.mit.edu;bcgsc.ca 37 9 136303424 136303424 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ADAMTS13-229 NM_139027 exon14 c.G1643A p.C548Y AGGTGTGTGGTGG . 314 12 160 0 . 3 3 0 0 0 BRD3 8019 broad.mit.edu;bcgsc.ca 37 9 136918407 136918407 + Missense_Mutation SNP C C T rs200965087 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BRD3-377 NM_007371 exon2 c.G193A p.A65T TGATTGCGTCCAC . 125 59 65 3 C|0.999;T|0.000 8 2 6 0 0 FCN2 2220 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 137777089 137777089 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FCN2-153 NM_004108 exon5 c.G306A p.P102P AGGCCCGCGTACC . 181 98 94 1 . 0 0 0 0 0 PPP1R26 9858 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 138377451 138377451 + Silent SNP C C T rs138779417 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_014811 exon4 c.C1095T p.D365D CAGCGACGATGGC . 331 159 171 1 C|1.000;T|0.000 10 8 2 0 0 KCNT1 57582 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 138662903 138662903 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCNT1-137 NM_020822 exon18 c.C1970T p.P657L AGGGTCCGGCCCG . 258 139 94 1 . 1 0 1 0 0 KCNT1 57582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 138669186 138669186 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KCNT1-137 NM_020822 exon21 c.C2352T p.G784G CCAGGGCTGCAAG . 464 42 230 0 . 0 0 0 0 0 GRIN1 2902 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 140055846 140055846 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GRIN1-187 NM_001185091 exon11 c.G1508A p.G503D CAGATGGCAAGTT . 674 100 269 1 . 0 0 0 0 0 TMEM203 94107 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 140099815 140099815 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM203-22 NM_053045 exon1 c.G52T p.E18X AGATCTCGAAGGT . 604 184 172 0 . 85 63 22 0 0 CACNA1B 774 broad.mit.edu;bcgsc.ca 37 9 141015261 141015261 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CACNA1B-138 NM_001243812 exon45 c.G6417A p.P2139P GCCCCCGAAGCCC . 219 84 70 2 . 2 1 1 0 0 YY2 404281 broad.mit.edu 37 X 21875129 21875129 + Missense_Mutation SNP T T G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . YY2-193 NM_206923 exon1 c.T527G p.V176G TGCAGGTCAAAAC . 104 3 67 1 . 0 0 0 0 0 SMC1A 8243 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 53438821 53438823 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SMC1A-232 NM_006306 exon7 c.1142_1144del p.381_382del TGCTGGCTTCTTC . 123 109 63 0 . 0 0 0 0 0 FGD1 2245 broad.mit.edu 37 X 54497148 54497148 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . FGD1-231 NM_004463 exon3 c.527delC p.P176fs TCCAGTGGGGGGG . 27 7 8 0 . 0 0 0 0 0 CDX4 1046 broad.mit.edu;bcgsc.ca 37 X 72667191 72667191 + Silent SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CDX4-130 NM_005193 exon1 c.C102T p.G34G AGGGGGCGGTGGG . 107 95 42 2 . 0 0 0 0 0 RPA4 29935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 96139817 96139817 + Missense_Mutation SNP A A G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RPA4-227 NM_013347 exon1 c.A508G p.K170E CTGGATAAAGCCC . 179 69 83 0 . 0 0 0 0 0 HNRNPH2 3188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100667308 100667308 + Missense_Mutation SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HNRNPH2-130 NM_001032393 exon2 c.G332A p.G111D ACGATGGCTTCGT . 357 328 184 0 . 94 6 88 0 0 RNF128 79589 hgsc.bcm.edu;broad.mit.edu 37 X 105937256 105937256 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RNF128-227 NM_024539 exon1 c.24delT p.S8fs GTCCAGTTTTTTT . 142 13 86 0 . 0 0 0 0 0 CAPN6 827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 110497633 110497633 + Splice_Site SNP T T C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CAPN6-195 NM_014289 exon4 c.166-2A>G . ATGTCCTATGAAT . 142 80 62 0 . 0 0 0 0 0 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118215302 118215302 + Missense_Mutation SNP A A T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIAA1210-67 NM_020721 exon14 c.T5120A p.I1707N TGCGTGATTTCTG . 81 78 34 0 . 0 0 0 0 0 GPC4 2239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 132437297 132437297 + Silent SNP G G A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . GPC4-226 NM_001448 exon8 c.C1365T p.S455S TGGTTTGCTGGTG . 140 126 71 0 . 22 0 22 0 0 SPANXB2 100133171 hgsc.bcm.edu 37 X 140085641 140085641 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . . NM_145664 exon2 c.136delA p.K46fs GCTCCTAAAAAAA . 397 232 227 0 . 0 0 0 0 0 SPANXC 64663 broad.mit.edu;bcgsc.ca 37 X 140336572 140336572 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SPANXC-62 NM_022661 exon1 c.G19T p.A7S CGCCGGCACTGGA . 466 12 262 1 . 0 0 0 0 0 MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 140994548 140994548 + Missense_Mutation SNP A A G rs58117541 bycluster;alternate_allele TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MAGEC1-133 NM_005462 exon4 c.A1358G p.Y453C TCTCCTACACTTT . 87 82 39 0 A|0.500;C|0.500 0 0 0 0 0 PLXNB3 5365 hgsc.bcm.edu;bcgsc.ca 37 X 153042691 153042691 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PLXNB3-130 NM_001163257 exon31 c.5025delG p.E1675fs CGAGGAGGGGGGG . 106 90 44 1 . 0 0 0 0 0 HCFC1 3054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153225825 153225825 + Missense_Mutation SNP C C A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HCFC1-132 NM_005334 exon7 c.G945T p.E315D GTTGTCCTCCAGT . 169 154 78 0 . 8 0 8 0 0 DKC1 1736 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 154004462 154004462 + Missense_Mutation SNP C C T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DKC1-227 NM_001363 exon14 c.C1339T p.R447W TCTCAGCGGAAGC . 131 49 80 1 . 1 0 1 0 0 MIA3 375056 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 222803533 222803534 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MIA3-98 NM_198551 exon4 c.2971_2972insA p.E991fs ATAGCAGAAAAAA . 119 96 141 0 . 0 0 0 0 0 TRIM21 6737 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 4409704 4409705 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TRIM21-229 NM_003141 exon4 c.561_562insA p.N187fs CAGGAAGTTTTTT . 32 21 50 0 . 0 0 0 0 0 EXPH5 23086 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 108383875 108383876 + Frame_Shift_Ins INS - - TG novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . EXPH5-95 NM_015065 exon6 c.2359_2360insCA p.D787fs ATTTATCTGTGTG . 75 57 73 0 . 0 0 0 0 0 DDX47 51202 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 12974637 12974638 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . DDX47-226 NM_016355 exon4 c.419_420insA p.A140fs CCCTTGCAAAAAA . 64 23 34 0 . 0 0 0 0 0 MPHOSPH9 10198 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 123645709 123645710 + Nonsense_Mutation INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MPHOSPH9-514 NM_022782 exon18 c.2899_2900insT p.D967_E968delinsX GTTCATCAAAAAA . 67 32 35 0 . 0 0 0 0 0 ATP7B 540 hgsc.bcm.edu;bcgsc.ca 37 13 52548260 52548261 + Frame_Shift_Ins INS - - AA novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ATP7B-92 NM_000053 exon2 c.1096_1097insTT p.A366fs TGCCGGCAATGGC . 131 116 136 1 . 0 0 0 0 0 BRF1 2972 hgsc.bcm.edu;broad.mit.edu 37 14 105693009 105693010 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . BRF1-155 NM_001519 exon8 c.877_878insC p.S293fs TGTACGAGGGGGG . 75 12 45 0 . 0 0 0 0 0 KIF7 374654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 90190208 90190209 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIF7-523 NM_198525 exon7 c.1641_1642insG p.G547fs CCGCGGGCCCCCC . 156 63 29 0 . 0 0 0 0 0 MYH11 4629 hgsc.bcm.edu 37 16 15802686 15802687 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . MYH11-666 NM_001040113 exon42 c.5820_5821insC p.P1940fs TTCCTGTGGGGGG . 158 20 69 0 . 0 0 0 0 0 ATP2A1 487 hgsc.bcm.edu;bcgsc.ca 37 16 28913639 28913640 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ATP2A1-93 NM_004320 exon17 c.2456_2457insC p.R819fs TGGACCGCCCCCC . 191 54 103 1 . 0 0 0 0 0 LAT 27040 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 28996226 28996227 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . LAT-44 NM_001014989 exon1 c.44_45insG p.L15fs CCGTCTTGGGGGG . 58 24 35 0 . 0 0 0 0 0 ZNF486 90649 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 20308051 20308052 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ZNF486-47 NM_052852 exon4 c.532_533insA p.E178fs CATACTGAAAAAA . 98 44 87 0 . 0 0 0 0 0 RTN2 6253 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 45996512 45996513 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RTN2-93 NM_005619 exon5 c.939_940insC p.P313fs AGGAGTAGGGGGG . 82 39 44 0 . 0 0 0 0 0 C1D 10438 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 68270087 68270088 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . C1D-186 NM_001190263 exon6 c.360_361insA p.N120fs GAGGGCATTTTTT . 104 35 111 0 . 0 0 0 0 0 SMYD5 10322 broad.mit.edu 37 2 73441441 73441442 + Frame_Shift_Ins INS - - GG novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . SMYD5-226 NM_006062 exon1 c.47_48insGG p.A16fs GCGTGGCGGGCCG . 152 11 62 0 . 0 0 0 0 0 ERCC3 2071 hgsc.bcm.edu;bcgsc.ca 37 2 128046943 128046944 + In_Frame_Ins INS - - TCT novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ERCC3-723 NM_000122 exon6 c.792_793insAGA p.E264delinsEE CTGTGTCTCTTCT . 305 196 248 0 . 0 0 0 0 0 KIF3B 9371 hgsc.bcm.edu;broad.mit.edu 37 20 30914608 30914609 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . KIF3B-517 NM_004798 exon6 c.1783_1784insA p.E595fs CTGGAAGAAAAAA . 49 14 22 0 . 0 0 0 0 0 TOP1 7150 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 39713140 39713141 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TOP1-1148 NM_003286 exon8 c.546_547insA p.D182fs TAAAGATAAAAAA . 76 24 68 0 . 0 0 0 0 0 RBM5 10181 hgsc.bcm.edu 37 3 50155887 50155888 + Frame_Shift_Ins INS - - GA rs112672304 TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . RBM5-278 NM_005778 exon25 c.2446_2447insGA p.X816delinsX ATGGAGTGAGAGA . 59 21 72 0 -|0.500;GA|0.500 0 0 0 0 0 HERC6 55008 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 89311864 89311865 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . HERC6-658 NM_017912 exon4 c.497_498insC p.F166fs AGGAGTTCCCCTC . 165 76 80 0 . 0 0 0 0 0 CWC27 10283 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 64100133 64100134 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . CWC27-90 NM_005869 exon10 c.858_859insA p.A286fs AATTGCCAAAAAA . 68 33 28 0 . 0 0 0 0 0 PHACTR2 9749 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 144086413 144086414 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . PHACTR2-92 NM_001100164 exon6 c.710_711insA p.S237fs CTCATTCAAAAAA . 25 20 24 0 . 0 0 0 0 0 ICA1 3382 hgsc.bcm.edu 37 7 8198250 8198251 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . ICA1-515 NM_022307 exon7 c.612_613insA p.N204fs GTCAAAGTTTTTT . 134 25 63 0 . 0 0 0 0 0 TMEM130 222865 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 98452922 98452923 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LB-01A-11D-A29I-10 TCGA-OR-A5LB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 1859d4f0-1cb2-48c4-8c28-f41da397e24d 1486299d-8e03-4ae8-8a7f-90c4d57168c2 . TMEM130-91 NM_152913 exon5 c.744_745insT p.L248fs GGGCCCCAACACT . 256 41 145 0 . 0 0 0 0 0