Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PER3	8863	ucsc.edu	37	1	7890053	7890053	+	Missense_Mutation	SNP	G	G	A	rs1776342	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PER3-93	NM_016831	exon18	c.G3019A	p.A1007T	GCCAGCGCTCTGT	.	117	14	120	2	G|0.998;A|0.002	9	9	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	20	20	0	0	G|0.061;T|0.939	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	rs2405913		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	FOXD2-226	NM_004474	exon1	c.G1102C	p.A368P	TTCTACGCGGCGT	.	6	6	0	0	G|0.835;C|0.165	0	0	0	0	0
RBM15	64783	broad.mit.edu	37	1	110882038	110882038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RBM15-661	NM_022768	exon1	c.C11T	p.A4V	GGACTGCGGGGCG	.	114	4	100	0	.	0	0	0	0	0
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197404443	197404443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CRB1-161	NM_201253	exon9	c.T3450G	p.H1150Q	TTTGCATGGAGGA	.	240	26	144	0	.	0	0	0	0	0
LEFTY1	10637	hgsc.bcm.edu	37	1	226075608	226075608	+	Silent	SNP	G	G	A	rs12753531	byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	LEFTY1-90	NM_020997	exon2	c.C375T	p.V125V	CTTGGGGACCGGC	.	7	5	0	0	G|0.827;A|0.173	0	0	0	0	0
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236700878	236700878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	LGALS8-91	NM_006499	exon4	c.G127A	p.A43T	AGTGACGCAGACA	.	185	87	134	0	.	1	0	1	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	IDI1-90	NM_004508	exon1	c.G38A	p.C13Y	GCCGCGCAGCCAA	.	23	5	5	0	C|0.981;T|0.019	4	4	0	0	0
PITRM1	10531	bcgsc.ca	37	10	3180227	3180227	+	Missense_Mutation	SNP	T	T	C	rs6901	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PITRM1-91	NM_001242307	exon27	c.A3113G	p.Q1038R	GCTCATTGGATGA	.	60	4	111	1	T|0.276;C|0.724	75	75	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659265	17659265	+	Missense_Mutation	SNP	G	G	C	rs118189437	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PTPLA-226	NM_014241	exon1	c.C74G	p.T25R	AGGAGCGTGGGAG	.	8	6	4	0	G|0.955;C|0.045	0	0	0	0	0
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	47087602	47087602	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PPYR1-524	NM_005972	exon3	c.C819A	p.A273A	GGTGGCCTTTGCT	.	135	30	95	0	.	0	0	0	0	0
KIAA1279	26128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70748621	70748621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KIAA1279-91	NM_015634	exon1	c.G33C	p.E11D	CTGCGAGAAATTC	.	234	42	211	1	.	5	4	1	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89474830	89474831	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PAPSS2-493	NM_001015880	exon6	c.728_729del	p.243_243del	CTGAAACTCTCCC	.	101	39	102	0	.	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	6	6	0	0	C|0.154;G|0.846	1	0	1	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105779553	105779553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SLK-549	NM_014720	exon16	c.C3194T	p.T1065I	GACAGACTCAAGA	.	202	37	212	0	.	33	28	5	0	0
SMC3	9126	bcgsc.ca	37	10	112363001	112363001	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SMC3-92	NM_005445	exon28	c.C3535T	p.L1179L	CCTGAACTGCTTG	.	135	5	133	0	.	63	63	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824789	824789	+	Missense_Mutation	SNP	T	T	C	rs1138693		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PNPLA2-90	NM_020376	exon10	c.T1442C	p.L481P	ACCAGCTGGCCGG	.	7	7	0	0	T|0.300;C|0.700	228	0	228	0	0
OR52E6	390078	bcgsc.ca	37	11	5862845	5862845	+	Missense_Mutation	SNP	A	A	G	rs4592451	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	OR52E6-68	NM_001005167	exon1	c.T283C	p.S95P	CAAAAGATATTTC	.	226	7	199	1	A|0.608;G|0.392	0	0	0	0	0
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46321507	46321507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CREB3L1-92	NM_052854	exon2	c.C124T	p.H42Y	CTGGACCACTTTA	.	310	112	343	0	.	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	8	4	0	0	G|0.581;A|0.419	27	16	11	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809044	64809044	+	Missense_Mutation	SNP	C	C	T	rs3741390	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SAC3D1-90	NM_013299	exon1	c.C280T	p.R94C	ATCGCCCGCGCCG	.	5	5	0	0	C|0.582;T|0.418	0	0	0	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809090	64809090	+	Missense_Mutation	SNP	T	T	G	rs12271134		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SAC3D1-90	NM_013299	exon1	c.T326G	p.L109R	CTGTGCTCCTGGA	.	7	7	0	0	T|0.005;G|0.995	3	0	3	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809133	64809133	+	Silent	SNP	T	T	G	rs10792455		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SAC3D1-90	NM_013299	exon1	c.T369G	p.A123A	GGCAGCTGTGGTG	.	6	6	0	0	T|0.119;G|0.881	3	0	3	0	0
SIPA1	6494	hgsc.bcm.edu	37	11	65415028	65415028	+	Silent	SNP	T	T	G	rs4930157		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SIPA1-90	NM_006747	exon9	c.T2205G	p.T735T	CCAGACTCTGCCC	.	7	7	0	0	T|0.010;G|0.990	5	0	5	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	10	5	0	0	C|0.233;T|0.767	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	32	0	1	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_138706	exon4	c.989_1006del	p.330_336del	GCATCCTGGCCCT	.	41	0	4	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	260	14	301	12	G|0.998;A|0.002	557	363	192	0	2
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	17	17	0	0	A|0.133;G|0.867	0	0	0	0	0
TMCC3	57458	bcgsc.ca	37	12	94972290	94972290	+	Silent	SNP	C	C	T	rs2270893	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TMCC3-92	NM_020698	exon3	c.G1011A	p.E337E	CTGGTCCTCCAGT	.	82	5	69	0	C|0.474;T|0.526	3	3	0	0	0
NTN4	59277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96104338	96104338	+	Missense_Mutation	SNP	C	C	T	rs148021049	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	NTN4-92	NM_021229	exon5	c.G1061A	p.R354H	CCACTACGATTCC	.	174	84	184	0	C|0.999;T|0.001	19	13	6	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	26	13	0	0	.	0	0	0	0	0
OAS3	4940	bcgsc.ca	37	12	113386779	113386779	+	Missense_Mutation	SNP	C	C	G	rs2285933	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	OAS3-1	NM_006187	exon6	c.C1143G	p.S381R	AGGGAGCAAACCT	.	220	8	191	0	C|0.427;G|0.573	5	5	0	0	0
DNAH10	196385	broad.mit.edu	37	12	124362430	124362430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DNAH10-95	NM_207437	exon47	c.G7993T	p.G2665C	TTTAATGGTCTTG	.	70	4	72	0	.	0	0	0	0	0
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26436472	26436472	+	Missense_Mutation	SNP	A	A	G	rs138600634	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ATP8A2-138	NM_016529	exon33	c.A3109G	p.T1037A	ATGCTGACCTGGC	.	178	54	125	0	A|0.999;T|0.000	0	0	0	0	0
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494294	28494294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PDX1-514	NM_000209	exon1	c.T19C	p.Y7H	GAGCAGTACTACG	.	204	82	80	0	.	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	15	5	0	0	G|0.789;A|0.211	0	0	0	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53421432	53421432	+	Silent	SNP	C	C	A	rs3742300	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PCDH8-153	NM_002590	exon1	c.G1140T	p.G380G	CGCTCCCCCGAGT	.	9	9	0	0	C|0.649;A|0.351	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	78	6	30	0	.	11	11	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	6	6	0	0	C|0.569;G|0.431	5	0	5	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ASB2-228	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC	.	168	45	66	3	.	1	1	0	0	0
PLCB2	5330	hgsc.bcm.edu	37	15	40583560	40583560	+	Silent	SNP	G	G	T	rs62021888		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PLCB2-275	NM_004573	exon26	c.C2776A	p.R926R	CGCCCCGCTGCAG	.	5	5	0	0	G|0.817;T|0.183	0	0	0	0	0
CELF6	60677	hgsc.bcm.edu	37	15	72612195	72612195	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CELF6-154	NM_001172684	exon1	c.G21A	p.G7G	CGCTGACCCTCCC	.	12	4	1	0	.	0	0	0	0	0
AP3B2	8120	hgsc.bcm.edu	37	15	83378366	83378366	+	Silent	SNP	G	G	A	rs200226421		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	AP3B2-94	NM_004644	exon1	c.C93T	p.I31I	GGAGAAGATGCCG	.	18	8	5	0	.	1	0	1	0	0
TICRR	90381	bcgsc.ca	37	15	90168693	90168693	+	Missense_Mutation	SNP	T	T	A	rs1866928	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_152259	exon20	c.T5152A	p.S1718T	CTTGAGTCAGAGG	.	67	5	59	0	T|0.635;A|0.365	1	1	0	0	0
MYH11	4629	broad.mit.edu	37	16	15832515	15832515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MYH11-666	NM_001040114	exon25	c.G3049A	p.D1017N	TTAAGTCACTAAT	.	59	5	89	2	.	0	0	0	0	0
SPNS1	83985	broad.mit.edu	37	16	28992923	28992923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SPNS1-90	NM_001142451	exon6	c.G796T	p.A266S	CTGAGGGCTCTGG	.	48	4	43	0	.	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	9	9	0	0	G|0.001;A|0.999	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	20	11	2	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	18	0	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	13	11	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	13	11	0	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	9	9	0	0	A|0.188;G|0.812	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TP53-70225	NM_000546	exon3	c.80delC	p.P27fs	TTTTCAGGAAGTC	.	28	25	43	0	.	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	8	7	0	0	C|0.808;T|0.192	0	0	0	0	0
CDRT4	284040	bcgsc.ca	37	17	15341183	15341183	+	Missense_Mutation	SNP	A	A	C	rs2954759	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CDRT4-90	NM_001204477	exon4	c.T366G	p.H122Q	ATCCGCATGTAAG	.	141	5	229	0	A|0.767;C|0.233	3	3	0	0	0
POLDIP2	26073	bcgsc.ca	37	17	26676135	26676135	+	RNA	SNP	C	C	T	rs13469	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	.	.	.	.	CTGCAGCGAGACG	.	101	7	125	0	C|0.491;T|0.509	67	67	0	0	0
MED24	9862	broad.mit.edu	37	17	38189409	38189409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MED24-187	NM_014815	exon8	c.T722G	p.F241C	GTGGGGAAGCCGG	.	36	3	73	2	.	4	4	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240791	39240791	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_033061	exon1	c.C333G	p.R111R	CTGCCGCCCCAGC	.	39	7	68	0	.	0	0	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu;ucsc.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	50	20	70	0	.	0	0	0	0	0
PTPN2	5771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12830976	12830976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PTPN2-652	NM_001207013	exon4	c.T326A	p.V109D	ATGACAACTGCTT	.	235	45	286	2	.	7	6	1	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MEX3C-659	NM_016626	exon1	c.537_545del	p.179_182del	GCCGCCGCCGCCG	.	37	31	0	0	.	0	0	0	0	0
LPPR3	0	hgsc.bcm.edu	37	19	813220	813220	+	Missense_Mutation	SNP	T	T	C	rs351994		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_024888	exon7	c.A1591G	p.T531A	CCCCCGTCTGCGC	.	15	8	0	0	T|0.751;C|0.249	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	25	16	0	0	C|0.766;T|0.234	5	3	2	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	27	12	0	0	G|0.749;A|0.251	1	1	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	27	12	0	0	T|0.403;C|0.597	4	4	0	0	0
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2191208	2191208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DOT1L-132	NM_032482	exon5	c.C462T	p.T154T	GATGACCGACGAC	.	239	112	229	0	.	7	1	6	0	0
NOTCH3	4854	bcgsc.ca	37	19	15303225	15303225	+	Silent	SNP	G	G	A	rs3815188	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	NOTCH3-855	NM_000435	exon3	c.C303T	p.T101T	TCGGGCGGTGCCA	.	169	7	172	0	G|0.773;A|0.227	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	38	16	2	0	A|0.873;G|0.127	0	0	0	0	0
RYR1	6261	broad.mit.edu	37	19	39062721	39062721	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RYR1-100	NM_000540	exon95	c.T13809G	p.G4603G	GTCAGGTGCAGGC	.	85	6	100	5	.	0	0	0	0	0
BLOC1S3	388552	hgsc.bcm.edu	37	19	45682824	45682824	+	Silent	SNP	G	G	A	rs758506		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	BLOC1S3-90	NM_212550	exon2	c.G270A	p.A90A	ATCGGCGGAGGAG	.	5	5	0	0	G|0.858;A|0.142	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	13	11	2	0	G|0.917;A|0.083	1	1	0	0	0
PNKP	11284	broad.mit.edu	37	19	50368482	50368482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PNKP-253	NM_007254	exon4	c.G400A	p.E134K	GCAGCTCAGCATC	.	72	3	76	0	.	82	80	2	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	44	12	2	0	A|0.777;G|0.223	0	0	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	rs12983578		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CTU1-68	NM_145232	exon3	c.G607C	p.E203Q	CCCCCTCGCCGGG	.	14	7	0	0	C|0.900;G|0.100	1	1	0	0	0
ZNF761	388561	bcgsc.ca	37	19	53959568	53959568	+	Missense_Mutation	SNP	G	G	C	rs76363078		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZNF761-91	NM_001008401	exon7	c.G1807C	p.E603Q	ACTGAAGAGAATC	.	131	6	131	0	.	3	3	0	0	0
CNOT3	4849	broad.mit.edu	37	19	54649663	54649663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CNOT3-93	NM_014516	exon9	c.A721C	p.T241P	GTCGCCACCTCCC	.	75	16	51	5	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	32	32	4	4	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	13	13	0	0	A|0.003;G|0.997	0	0	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	7	7	0	0	A|0.059;G|0.941	0	0	0	0	0
EPCAM	4072	bcgsc.ca	37	2	47601106	47601106	+	Missense_Mutation	SNP	T	T	C	rs1126497	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	EPCAM-91	NM_002354	exon3	c.T344C	p.M115T	CCTCCATGTGCTG	.	151	6	156	1	T|0.386;C|0.614	14	14	0	0	0
TEKT4	150483	ucsc.edu	37	2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	rs1052809	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TEKT4-155	NM_144705	exon6	c.C1270T	p.R424C	CGTACTCGCTACC	.	54	5	36	2	C|0.985;T|0.015	10	0	10	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	21	8	1	0	T|0.765;C|0.235	0	0	0	0	0
C1QL2	165257	hgsc.bcm.edu	37	2	119915509	119915509	+	Silent	SNP	G	G	T	rs1317848	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	C1QL2-91	NM_182528	exon1	c.C337A	p.R113R	CGGGCCGCCCCGA	.	15	9	0	0	G|0.681;T|0.319	0	0	0	0	0
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	155555818	155555818	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KCNJ3-92	NM_001260509	exon1	c.C531T	p.I177I	CCTCATCGGCTGC	.	99	6	103	0	.	0	0	0	0	0
SCN7A	6332	broad.mit.edu	37	2	167327196	167327196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SCN7A-67	NM_002976	exon6	c.C593A	p.P198H	TCCAGAGGTGAGT	.	91	3	89	0	.	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	11	11	3	3	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	9	5	0	0	T|0.311;C|0.689	3	1	2	0	0
SLC13A3	64849	bcgsc.ca	37	20	45242269	45242269	+	Silent	SNP	G	G	C	rs2273024	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SLC13A3-91	NM_022829	exon2	c.C207G	p.L69L	GGGGAAGAGGACG	.	219	7	155	1	G|0.680;C|0.320	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	9	9	0	0	C|0.999;T|0.001	5	0	5	0	0
RPS21	6227	ucsc.edu	37	20	60962972	60962972	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RPS21-90	NM_001024	exon4	c.186+2T>G	.	GGATGGTGAGTGT	.	171	2	141	3	.	6	5	1	0	0
KRTAP11-1	337880	bcgsc.ca	37	21	32253629	32253629	+	Missense_Mutation	SNP	C	C	T	rs71321355	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KRTAP11-1-91	NM_175858	exon1	c.G215A	p.R72Q	GTTCGCCGGTAAC	.	170	6	349	2	C|0.841;T|0.159	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	14	14	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	17	17	0	0	G|0.826;C|0.174	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	242	29	240	0	A|0.500;T|0.500	18	18	0	0	0
TEF	7008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41791922	41791922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TEF-91	NM_003216	exon4	c.G870C	p.K290N	GTGCAAGACCATC	.	183	12	192	0	.	8	8	0	0	0
CTNNB1	1499	ucsc.edu;bcgsc.ca	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	184	91	213	3	.	127	71	56	0	0
MUC4	4585	bcgsc.ca	37	3	195506459	195506459	+	Missense_Mutation	SNP	C	C	T	rs199910419		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MUC4-90	NM_018406	exon2	c.G11992A	p.A3998T	GGGTGGCGTGACC	.	71	14	233	5	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506462	195506462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MUC4-90	NM_018406	exon2	c.C11989G	p.H3997D	TGGCGTGACCTGT	.	61	7	234	2	.	0	0	0	0	0
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	5	5	0	0	T|0.175;G|0.825	7	4	3	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CRIPAK-90	NM_175918	exon1	c.T520C	p.C174R	TGCCCATGTGGAG	.	112	24	37	2	T|0.950;C|0.050	24	24	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	47	19	2	0	C|0.777;T|0.223	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	8	8	0	0	G|0.794;C|0.206	2	0	2	0	0
TMEM165	55858	hgsc.bcm.edu	37	4	56262374	56262374	+	Silent	SNP	A	A	G	rs1128141		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TMEM165-514	NM_018475	exon1	c.A18G	p.P6P	GGCTCCAGGGAAC	.	6	6	0	0	T|0.293;G|0.003	4	0	4	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	8	7	0	0	G|0.531;A|0.469	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DSPP-90	NM_014208	exon5	c.T2643C	p.D881D	CAGTGATAGCAGT	.	439	76	466	0	.	0	0	0	0	0
DSPP	1834	mdanderson.org	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DSPP-90	NM_014208	exon5	c.C2646T	p.S882S	TGATAGCAGTGAC	.	442	127	464	2	.	0	0	0	0	0
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	475724	475724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SLC9A3-90	NM_004174	exon15	c.G2203C	p.E735Q	GGAACTCGATCCC	.	100	5	94	0	.	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	13	4	0	0	T|0.352;C|0.648	0	0	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu	37	5	50685485	50685485	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ISL1-515	NM_002202	exon4	c.484delC	p.P162fs	GCGGAGCCCATCT	.	49	26	12	0	.	0	0	0	0	0
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112103039	112103039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	APC-12026	NM_001127511	exon3	c.A404G	p.N135S	TTGTAAATGGAAG	.	120	50	141	0	.	1	1	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	170632528	170632528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	RANBP17-524	NM_022897	exon20	c.C2143T	p.R715C	TGACAGCGTATGT	.	213	14	184	0	.	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	16	13	4	0	G|0.585;C|0.415	0	0	0	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	rs186444058		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	BTNL9-91	NM_152547	exon11	c.C1150T	p.H384Y	GGCCGCCACTACT	.	24	12	1	0	C|0.983;T|0.017	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	13	13	0	0	A|0.006;G|0.994	2	0	2	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	11	11	0	0	C|0.673;A|0.327	2	0	2	0	0
TMEM63B	55362	bcgsc.ca	37	6	44115169	44115169	+	Missense_Mutation	SNP	G	G	A	rs4714759	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TMEM63B-92	NM_018426	exon12	c.G919A	p.V307M	GAGAACGTGCCTA	.	129	7	224	0	G|0.903;A|0.097	9	9	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	FAM46A-90	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	106	14	27	0	.	1	1	0	0	0
TPBG	7162	hgsc.bcm.edu	37	6	83074937	83074937	+	Missense_Mutation	SNP	A	A	G	rs144253219	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TPBG-514	NM_001166392	exon2	c.A259G	p.T87A	GTGCCCACGGACC	.	78	24	1	0	A|0.990;G|0.010	1	1	0	0	0
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83830485	83830485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	DOPEY1-155	NM_015018	exon10	c.C1074G	p.I358M	TTTAATCAGTTTA	.	152	32	72	0	.	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	37	20	1	0	G|0.668;A|0.332	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	25	25	0	0	G|0.411;T|0.589	0	0	0	0	0
ABHD11	83451	bcgsc.ca	37	7	73151644	73151644	+	Silent	SNP	A	A	G	rs6460052	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ABHD11-90	NM_148912	exon4	c.T540C	p.Y180Y	TGCCACATAGGTT	.	57	5	43	1	A|0.410;G|0.590	2	2	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	75	20	1	0	.	0	0	0	0	0
KLRG2	346689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139164980	139164980	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KLRG2-90	NM_198508	exon2	c.C771T	p.Y257Y	CTTCACGTACATG	.	107	34	72	0	.	0	0	0	0	0
CLCN1	1180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143042815	143042815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CLCN1-156	NM_000083	exon17	c.T2132C	p.V711A	CCTTTGTGGATGA	.	195	69	108	1	.	0	0	0	0	0
ZNF282	8427	hgsc.bcm.edu	37	7	148921732	148921732	+	Missense_Mutation	SNP	G	G	A	rs11547158	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZNF282-90	NM_003575	exon8	c.G2009A	p.R670Q	CTGAGCGAGACTA	.	7	5	0	0	G|0.943;A|0.057	5	2	3	0	0
PDE7A	5150	ucsc.edu;bcgsc.ca	37	8	66692007	66692007	+	Silent	SNP	A	A	G	rs200299656		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PDE7A-90	NM_001242318	exon3	c.T231C	p.F77F	TGATTCAAATCCT	.	40	4	55	0	A|1.000;G|0.000	1	1	0	0	0
MATN2	4147	bcgsc.ca	37	8	98943545	98943545	+	Silent	SNP	A	A	G	rs2290471	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MATN2-24	NM_002380	exon3	c.A507G	p.T169T	CGTGACAGATGGG	.	122	5	129	0	A|0.787;G|0.213	1	1	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100133706	100133706	+	Nonsense_Mutation	SNP	T	T	G	rs7460625	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	VPS13B-301	NM_181661	exon8	c.T1239G	p.Y413X	TCTCTATCAACTT	.	77	3	62	0	T|0.294;G|0.706	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	25	24	0	0	A|0.118;G|0.882	1	0	1	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	6	6	0	0	T|0.010;C|0.990	35	0	35	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	25	9	0	0	C|0.740;T|0.260	3	2	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	49	22	0	0	A|0.738;G|0.262	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	52	25	3	0	G|0.246;A|0.754	3	1	2	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	30	4	4	0	G|0.572;C|0.428	0	0	0	0	0
FAM205A	259308	bcgsc.ca	37	9	34725047	34725047	+	Silent	SNP	C	C	T	rs78716275		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_001141917	exon4	c.G2190A	p.P730P	CAGGTCCGGGTCA	.	136	7	268	3	T|1.000;|0.000	0	0	0	0	0
LOC286238	0	bcgsc.ca	37	9	91262494	91262494	+	Missense_Mutation	SNP	G	G	T	rs72751474	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_001100111	exon2	c.C149A	p.P50H	TTTCCAGGTCTCA	.	157	6	152	1	G|0.919;T|0.081	0	0	0	0	0
REXO4	57109	broad.mit.edu;bcgsc.ca	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	REXO4-90	NM_020385	exon8	c.1195_1197del	p.399_399del	CCACTCCTTCTTC	.	85	41	63	0	.	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139741088	139741089	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	.	NM_001080482	exon1	c.2222_2223del	p.741_741del	TCGCGCGTGTCGG	.	56	17	29	1	.	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CACNA1B-138	NM_001243812	exon19	c.G2584T	p.A862S	ACCCCCGCGGCGG	.	12	7	0	0	G|0.601;T|0.399	0	0	0	0	0
HDHD1	8226	bcgsc.ca	37	X	6995315	6995315	+	Silent	SNP	C	C	T	rs2379206	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	HDHD1-130	NM_001135565	exon4	c.G525A	p.P175P	GATGTCCGGGTCT	.	141	7	139	1	C|0.346;T|0.654	8	8	0	0	0
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50345785	50345785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	SHROOM4-131	NM_020717	exon7	c.T3790A	p.S1264T	CCCCTGAAGGAGG	.	82	14	78	0	.	0	0	0	0	0
ARHGAP36	158763	hgsc.bcm.edu	37	X	130192420	130192420	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ARHGAP36-133	.	.	.	.	CCGTGGTGAGTGG	.	77	4	33	0	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	17	17	2	2	-|0.389;CGC|0.611	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	PCGF6-226	NM_032154	exon1	c.84_85insGCCTCC	p.P28delinsPPP	GGAGACAGGAGGC	.	14	8	0	0	-|0.590;GGAGGC|0.410	0	0	0	0	0
BRCA2	675	bcgsc.ca	37	13	32910689	32910690	+	In_Frame_Ins	INS	-	-	TCTTCTTCT	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	BRCA2-3153	NM_000059	exon11	c.2197_2198insTCTTCTTCT	p.V733delinsVFFF	GAAGAGGTCTTGG	.	115	4	169	0	.	0	0	0	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527577	64527578	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	ADAMTS9-230	NM_182920	exon33	c.5134_5135insC	p.S1712fs	AGTGGCTGGGTTG	.	269	9	281	0	.	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu	37	6	161413044	161413045	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	MAP3K4-548	NM_006724	exon1	c.81_82insCCG	p.P27delinsPP	GCCGCCACCGCCG	.	38	18	0	0	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	11	0	0	0	T|0.470;C|0.530	0	0	0	0	0