Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	11	10	0	0	G|0.061;T|0.939	0	0	0	0	0
KANK4	163782	bcgsc.ca	37	1	62732421	62732421	+	Missense_Mutation	SNP	T	T	C	rs11207949	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KANK4-74	NM_181712	exon6	c.A2302G	p.T768A	CTGTGGTGGTCCC	.	240	7	255	0	T|0.722;C|0.278	0	0	0	0	0
LHX8	431707	ucsc.edu;bcgsc.ca	37	1	75622742	75622742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LHX8-93	NM_001001933	exon9	c.G975A	p.A325A	AACTGCGCTGCAT	.	213	54	184	2	.	0	0	0	0	0
KIAA1324	57535	bcgsc.ca	37	1	109656946	109656946	+	Silent	SNP	T	T	C	rs667524	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIAA1324-157	NM_020775	exon1	c.T141C	p.H47H	GCTTCATGCCTGC	.	190	7	265	1	T|0.512;C|0.488	0	0	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114483599	114483599	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	HIPK1-361	NM_152696	exon2	c.G594T	p.R198R	AGGCCGGGGGACA	.	47	4	64	0	.	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	11	7	0	0	G|0.680;C|0.320	0	0	0	0	0
SPRR3	6707	broad.mit.edu	37	1	152975659	152975682	+	In_Frame_Del	DEL	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SPRR3-45	NM_001097589	exon2	c.163_186del	p.55_62del	ATTCCAGAGCCAG	.	145	40	160	0	.	0	0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GON4L-93	NM_001037533	exon22	c.G4584A	p.E1528E	TTCTTCCTCCTCT	.	54	7	57	1	.	0	0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733257	155733257	+	Silent	SNP	T	T	C	rs607834	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GON4L-93	NM_001037533	exon22	c.A4572G	p.P1524P	TTCTTCTGGCTCA	.	49	11	43	1	T|0.054;C|0.946	0	0	0	0	0
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058203	158058203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIRREL-91	NM_018240	exon8	c.C1003T	p.P335S	GGGAATCCCCCCC	.	190	40	170	0	.	0	0	0	0	0
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169697005	169697005	+	Missense_Mutation	SNP	A	A	G	rs199700651		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SELE-95	NM_000450	exon9	c.T1343C	p.I448T	TCTCCAATAGGGG	.	124	32	83	0	A|0.999;G|0.001	0	0	0	0	0
MTR	4548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237060314	237060314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MTR-92	NM_000254	exon32	c.T3607A	p.L1203I	ATTAGGTTAACAG	.	90	9	78	0	.	0	0	0	0	0
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18122634	18122634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MRC1-68	NM_002438	exon4	c.G644A	p.G215D	TTGAGGGCAGTGA	.	227	69	202	0	.	0	0	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GPRIN2-90	NM_014696	exon3	c.G721A	p.V241M	AGGGAGGTGAGGG	.	180	25	109	0	G|0.639;A|0.361	0	0	0	0	0
TYSND1	219743	hgsc.bcm.edu	37	10	71906010	71906010	+	Silent	SNP	C	C	G	rs11549688		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TYSND1-135	NM_173555	exon1	c.G333C	p.A111A	GAGGCTCGCGCAC	.	16	10	0	0	C|0.964;G|0.036	0	0	0	0	0
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93711281	93711281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	BTAF1-92	NM_003972	exon5	c.G522C	p.L174F	GGATTTGGATTAT	.	103	31	78	0	.	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	36	36	0	0	C|0.339;G|0.661	0	0	0	0	0
GOT1	2805	broad.mit.edu	37	10	101157345	101157345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GOT1-90	NM_002079	exon9	c.G1201A	p.V401M	TGGCCACGTAATC	.	287	7	168	0	.	0	0	0	0	0
SEMA4G	57715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102740027	102740027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SEMA4G-154	NM_001203244	exon10	c.G1277A	p.R426H	ACATACGCTACAC	.	353	70	170	0	.	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	28	18	0	0	C|0.759;A|0.241	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	23	9	0	0	T|0.623;G|0.377	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu	37	10	108924150	108924150	+	Silent	SNP	G	G	C	rs61732174		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SORCS1-153	NM_001206572	exon1	c.C135G	p.S45S	TGGAGCGGAGCTG	.	22	14	2	0	G|0.939;C|0.061	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012315	135012315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KNDC1-229	NM_152643	exon14	c.A2303G	p.N768S	CAGCAAACCAGCC	.	45	24	1	0	.	0	0	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824789	824789	+	Missense_Mutation	SNP	T	T	C	rs1138693		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PNPLA2-90	NM_020376	exon10	c.T1442C	p.L481P	ACCAGCTGGCCGG	.	6	6	0	0	T|0.300;C|0.700	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MUC2-90	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA	.	166	11	78	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MUC2-90	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC	.	131	14	101	2	.	0	0	0	0	0
CHRNA10	57053	hgsc.bcm.edu	37	11	3688934	3688934	+	Silent	SNP	G	G	A	rs147957618		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CHRNA10-91	NM_020402	exon4	c.C423T	p.A141A	GCGCACGGCGCCA	.	40	26	0	0	G|0.995;A|0.005	0	0	0	0	0
RBMXL2	27288	hgsc.bcm.edu	37	11	7110751	7110751	+	Missense_Mutation	SNP	A	A	G	rs11041171		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RBMXL2-68	NM_014469	exon1	c.A400G	p.T134A	GGCTACACGGCGG	.	6	6	0	0	A|0.078;G|0.922	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	17	9	0	0	C|0.748;A|0.252	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	rs1317826	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DGKZ-676	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	5	4	3	0	A|0.608;G|0.392	0	0	0	0	0
TRIM51	84767	hgsc.bcm.edu;broad.mit.edu	37	11	55658957	55658957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_032681	exon7	c.C1208G	p.P403R	ATGTTCCAAGACC	.	72	9	27	0	.	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57076797	57076797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TNKS1BP1-91	NM_033396	exon6	c.G3388A	p.D1130N	CTCTGTCGTTGCC	.	114	28	82	0	.	0	0	0	0	0
INCENP	3619	hgsc.bcm.edu	37	11	61914282	61914282	+	Silent	SNP	G	G	A	rs113981632		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	INCENP-227	NM_001040694	exon15	c.G2112A	p.E704E	GCGCGAGCAGGAG	.	25	13	2	0	A|0.035;G|0.965	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	5	5	0	0	G|0.449;A|0.551	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	39	23	0	0	C|0.921;T|0.079	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	8	0	0	C|0.233;T|0.767	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	39	0	1	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_138706	exon4	c.989_1006del	p.330_336del	GCATCCTGGCCCT	.	45	0	2	0	.	0	0	0	0	0
PRICKLE1	144165	bcgsc.ca	37	12	42854208	42854208	+	Silent	SNP	A	A	G	rs3747563	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PRICKLE1-518	NM_001144882	exon8	c.T1899C	p.F633F	ATCAGAAAACTTG	.	156	5	91	0	A|0.686;G|0.314	0	0	0	0	0
NACA	4666	hgsc.bcm.edu	37	12	57107325	57107325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NACA-254	NM_001113203	exon8	c.C2507A	p.A836D	ACCTTGGCTTCCC	.	61	4	78	0	.	0	0	0	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57559628	57559628	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LRP1-596	NM_002332	exon16	c.C2571T	p.G857G	GCCAGGCGAGTTT	.	268	54	163	1	.	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81769579	81769579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PPFIA2-231	NM_001220476	exon9	c.G1127A	p.R376Q	ACCTGCCGCAGGA	.	132	45	114	0	.	0	0	0	0	0
CCDC59	29080	bcgsc.ca	37	12	82752037	82752037	+	Missense_Mutation	SNP	T	T	G	rs79245219	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CCDC59-90	NM_014167	exon1	c.A119C	p.N40T	GGGTGGTTAGGCC	.	131	5	116	0	T|0.971;G|0.029	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	23	14	0	0	A|0.273;G|0.727	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	44	16	6	0	.	0	0	0	0	0
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112893833	112893833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PTPN11-7239	NM_080601	exon6	c.A722G	p.D241G	CCACAGATAAAGT	.	379	77	332	1	.	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133067343	133067343	+	Missense_Mutation	SNP	A	A	G	rs4883578		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FBRSL1-70	NM_001142641	exon1	c.A187G	p.T63A	CCCCGCACCGCGC	.	11	11	0	0	T|0.318;C|0.682	0	0	0	0	0
PXMP2	5827	hgsc.bcm.edu	37	12	133264332	133264332	+	Silent	SNP	C	C	T	rs11538534	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PXMP2-90	NM_018663	exon1	c.C76T	p.L26L	CAGTACCTGCTCT	.	5	5	0	0	C|0.572;T|0.428	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	6	6	0	0	C|0.372;T|0.628	0	0	0	0	0
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115027384	115027384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CDC16-226	NM_003903	exon15	c.C1337G	p.P446R	GGGAACCTTTGTT	.	148	30	143	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	81	5	11	0	.	0	0	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF219-90	NM_001102454	exon3	c.698_703del	p.233_235del	GGGGTGGAGGCTG	.	49	21	0	0	.	0	0	0	0	0
MBIP	51562	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36789780	36789780	+	Silent	SNP	C	C	G	rs138198154	byfrequency;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MBIP-658	NM_016586	exon1	c.G15C	p.T5T	AAGCTCCGTGGCA	.	69	19	45	1	C|0.998;T|0.002	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	14	14	0	0	C|0.569;G|0.431	0	0	0	0	0
DDHD1	80821	bcgsc.ca	37	14	53619554	53619554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DDHD1-92	NM_001160147	exon1	c.A263C	p.N88T	TCATAGTTCTCGT	.	356	74	117	2	.	0	0	0	0	0
HSPA2	3306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009483	65009483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	HSPA2-226	NM_021979	exon1	c.A1916G	p.D639G	AAGTGGACTAAGC	.	57	13	79	1	.	0	0	0	0	0
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434571	79434571	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NRXN3-587	NM_004796	exon11	c.C1905T	p.L635L	AAAGCTCGTGGCC	.	253	52	157	0	.	0	0	0	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ASB2-228	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC	.	213	50	48	11	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	20	14	0	0	T|0.603;C|0.397	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644147	104644147	+	Silent	SNP	C	C	T	rs11621644	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIF26A-24	NM_015656	exon12	c.C5022T	p.S1674S	CGCCTCCTCCGCC	.	12	10	1	0	C|0.681;T|0.319	0	0	0	0	0
CEP170B	283638	broad.mit.edu	37	14	105352650	105352650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001112726	exon12	c.T2074G	p.S692A	GAGGGGTCCCTGC	.	127	23	16	1	.	0	0	0	0	0
KIF23	9493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69721517	69721517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIF23-227	NM_138555	exon10	c.G1037A	p.R346Q	CTAACCGGACCAG	.	139	33	120	0	.	0	0	0	0	0
C1QTNF8	390664	hgsc.bcm.edu	37	16	1143513	1143529	+	Frame_Shift_Del	DEL	GGCCGGCTTGACCAGGT	GGCCGGCTTGACCAGGT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GGCCGGCTTGACCAGGT	GGCCGGCTTGACCAGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C1QTNF8-91	NM_207419	exon4	c.731_747del	p.244_249del	CTCGGCGGCCGGC	.	176	25	30	0	.	0	0	0	0	0
CACNA1H	8912	broad.mit.edu	37	16	1250295	1250295	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CACNA1H-67	NM_021098	exon7	c.G843A	p.T281T	CCAGACGGAGGAG	.	173	5	73	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	9	9	0	0	T|0.035;G|0.004	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
SLC12A4	6560	bcgsc.ca	37	16	67984589	67984589	+	Silent	SNP	A	A	G	rs11542821	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SLC12A4-91	NM_001145962	exon10	c.T1428C	p.G476G	GCAGGCACCAAAG	.	107	5	112	1	A|0.851;G|0.149	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	16	5	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	26	23	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	24	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	23	22	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	23	22	0	0	.	0	0	0	0	0
ANKRD11	29123	hgsc.bcm.edu	37	16	89346883	89346883	+	Missense_Mutation	SNP	C	C	G	rs60520302	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKRD11-139	NM_001256183	exon9	c.G6067C	p.A2023P	ACGGGGCAGGAGA	.	24	9	2	0	C|0.952;G|0.048	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	31	20	0	0	C|0.846;T|0.154	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C16orf3-90	NM_001214	exon1	c.G193A	p.G65S	GGCAGCCTACGGG	.	268	18	145	3	C|0.500;T|0.500	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	12	12	0	0	C|0.015;A|0.985	0	0	0	0	0
FXR2	9513	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7495630	7495630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_004860	exon16	c.G1868A	p.R623H	CTCTGGCGGCTCT	.	43	4	58	0	.	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	11	11	0	0	C|0.823;G|0.000;T|0.177	0	0	0	0	0
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38289309	38289309	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MSL1-68	NM_001012241	exon7	c.T714C	p.S238S	TGACAGTGTGTTT	.	118	22	107	0	.	0	0	0	0	0
KCNH4	23415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40322162	40322162	+	Silent	SNP	C	C	T	rs140040426	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KCNH4-153	NM_012285	exon8	c.G1353A	p.A451A	CTTCTCCGCGTCG	.	220	62	114	0	C|1.000;T|0.000	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ASB16-227	NM_080863	exon3	c.A881G	p.N294S	GTGCCAACGGCTG	.	21	11	0	0	A|0.590;G|0.410	0	0	0	0	0
NT5C	30833	hgsc.bcm.edu	37	17	73127683	73127683	+	Silent	SNP	T	T	C	rs4788867	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NT5C-90	NM_001252377	exon1	c.A120G	p.Q40Q	GCGGCGTTGCTCC	.	5	5	0	0	T|0.502;C|0.498	0	0	0	0	0
C17orf70	80233	broad.mit.edu	37	17	79517591	79517591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C17orf70-92	NM_025161	exon3	c.929delA	p.D310fs	AGGCAGTCACAGT	.	200	8	89	0	.	0	0	0	0	0
UTS2R	2837	hgsc.bcm.edu	37	17	80332223	80332223	+	Missense_Mutation	SNP	C	C	G	rs41344948	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	UTS2R-153	NM_018949	exon1	c.C23G	p.P8R	AGTCCCCGAGCAG	.	48	27	1	0	C|0.990;G|0.010	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	23	8	2	0	T|0.941;C|0.059	0	0	0	0	0
L3MBTL4	91133	broad.mit.edu;bcgsc.ca	37	18	6093437	6093437	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	L3MBTL4-93	NM_173464	exon15	c.1290delA	p.E430fs	GTCTGATTCCAAA	.	36	9	32	0	.	0	0	0	0	0
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7023307	7023307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LAMA1-149	NM_005559	exon19	c.G2557A	p.G853S	CGTTGCCGCTGCA	.	177	37	114	0	.	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28651720	28651720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DSC2-517	NM_024422	exon13	c.C1976A	p.S659Y	ACACTAGACATGC	.	234	54	163	0	.	0	0	0	0	0
TCEB3C	162699	broad.mit.edu;bcgsc.ca	37	18	44555127	44555127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TCEB3C-68	NM_145653	exon1	c.C1087T	p.L363F	GTTCAAGAACCGA	.	841	27	496	2	.	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MEX3C-659	NM_016626	exon1	c.537_545del	p.179_182del	GCCGCCGCCGCCG	.	41	23	0	0	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	51	28	0	0	T|0.767;C|0.233	0	0	0	0	0
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1127619	1127619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_014963	exon5	c.C425T	p.P142L	GTGGAGGGGGCAG	.	116	39	69	0	.	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	26	7	1	0	T|0.403;C|0.597	0	0	0	0	0
LINGO3	645191	hgsc.bcm.edu	37	19	2290499	2290499	+	Missense_Mutation	SNP	C	C	T	rs7258841		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001101391	exon2	c.G1277A	p.R426H	AGGAAGCGGACGT	.	11	10	1	0	C|0.734;T|0.266	0	0	0	0	0
MCOLN1	57192	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7594484	7594484	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MCOLN1-153	NM_020533	exon11	c.C1245T	p.I415I	CCTCATCGCCACA	.	110	45	135	1	.	0	0	0	0	0
ZNF799	90576	ucsc.edu	37	19	12501907	12501907	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF799-74	NM_001080821	exon4	c.T1305C	p.S435S	TCGAAGAGAACTG	.	62	8	108	4	.	0	0	0	0	0
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19764811	19764811	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ATP13A1-138	NM_020410	exon14	c.C1956T	p.A652A	CTTCACGGCCGCG	.	42	13	48	0	.	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	12	12	0	0	G|0.540;T|0.460	0	0	0	0	0
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36342537	36342537	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NPHS1-49	NM_004646	exon2	c.G96A	p.R32R	GAAGCCCCGGGGA	.	307	61	173	0	.	0	0	0	0	0
SYNE4	163183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36494356	36494364	+	In_Frame_Del	DEL	GAGGAGGAA	GAGGAGGAA	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAGGAGGAA	GAGGAGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001039876	exon8	c.1090_1098del	p.364_366del	CACCAGGAGGAGG	.	186	19	139	0	.	0	0	0	0	0
CAPNS1	826	broad.mit.edu	37	19	36633865	36633865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CAPNS1-90	NM_001749	exon5	c.C388T	p.R130X	GTGACACGACGTA	.	313	6	173	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	50	48	0	0	G|0.349;A|0.651	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	175	16	31	0	.	0	0	0	0	0
C19orf54	284325	hgsc.bcm.edu;broad.mit.edu	37	19	41248646	41248647	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_198476	exon6	c.747_748del	p.249_250del	CGAGACTGGGCAC	.	239	0	119	0	.	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	9	6	0	0	A|0.464;G|0.536	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50104897	50104897	+	Missense_Mutation	SNP	C	C	T	rs189937355		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PRR12-70	NM_020719	exon6	c.C4495T	p.P1499S	CCGCCACCGCCGC	.	20	13	2	0	C|0.986;T|0.014	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	16	16	0	0	T|0.228;C|0.772	0	0	0	0	0
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54695770	54695770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TSEN34-90	NM_024075	exon3	c.G442A	p.D148N	AAAGAGGATGAGA	.	153	13	89	0	.	0	0	0	0	0
LILRB3	11025	ucsc.edu	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LILRB3-93	NM_006864	exon4	c.C366T	p.S122S	GGGTTTGCTGTAG	.	103	16	91	9	G|0.881;A|0.119	0	0	0	0	0
PTPRH	5794	bcgsc.ca	37	19	55715359	55715359	+	Missense_Mutation	SNP	A	A	G	rs45493898	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PTPRH-138	NM_002842	exon5	c.T677C	p.L226P	CAGCTCAGGGAGA	.	71	5	50	0	A|0.972;G|0.028	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	22	6	0	0	A|0.270;G|0.730	0	0	0	0	0
ZNF784	147808	hgsc.bcm.edu	37	19	56133261	56133261	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF784-68	NM_203374	exon2	c.C828T	p.H276H	CGGCCCGTGGAAG	.	35	8	5	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	30	30	2	2	.	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	5	4	0	0	C|0.719;T|0.281	0	0	0	0	0
RHOB	388	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20647308	20647308	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RHOB-848	NM_004040	exon1	c.G82C	p.D28H	AGTAAGGACGAGT	.	227	55	128	1	.	0	0	0	0	0
RMDN2	151393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	38216713	38216713	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_144713	exon6	c.A1355T	p.E452V	TATCTGAGTTTGA	.	37	7	38	0	.	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74643337	74643337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001145054	exon2	c.T59G	p.V20G	CGGGTCACCCCGC	.	90	19	52	5	.	0	0	0	0	0
HTRA2	27429	hgsc.bcm.edu	37	2	74757554	74757554	+	Missense_Mutation	SNP	G	G	T	rs72470544	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	HTRA2-91	NM_013247	exon1	c.G421T	p.A141S	CCGCCCGCTTCTC	.	12	5	2	0	G|0.983;T|0.017	0	0	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ATOH8-90	NM_032827	exon1	c.T449C	p.L150P	CGGGTCTGCGTCC	.	5	5	0	0	T|0.382;C|0.618	0	0	0	0	0
TEKT4	150483	broad.mit.edu	37	2	95537377	95537377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TEKT4-155	NM_144705	exon1	c.C53A	p.A18D	ACGTGGCCCGTAA	.	369	14	109	1	.	0	0	0	0	0
CNNM3	26505	hgsc.bcm.edu	37	2	97482167	97482167	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CNNM3-91	NM_199078	exon1	c.A153G	p.G51G	ACGCGGAGGGGCG	.	49	23	1	0	.	0	0	0	0	0
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113079374	113079374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZC3H6-93	NM_198581	exon8	c.T1018C	p.Y340H	AAATGTTACCAGG	.	126	33	114	0	.	0	0	0	0	0
HS6ST1	9394	bcgsc.ca	37	2	129075961	129075961	+	Silent	SNP	T	T	C	rs61732881	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	HS6ST1-91	NM_004807	exon1	c.A177G	p.T59T	GTCGGGTGTGGGG	.	128	70	33	12	T|0.332;C|0.668	0	0	0	0	0
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169853195	169853195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ABCB11-139	NM_003742	exon6	c.A427G	p.S143G	AGTAACTGGCAAA	.	81	20	91	0	.	0	0	0	0	0
TMEM194B	100131211	hgsc.bcm.edu	37	2	191399378	191399378	+	Missense_Mutation	SNP	C	C	G	rs13412879		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001142645	exon1	c.G4C	p.G2R	GCGGCCCCATTTC	.	8	6	2	0	C|0.836;G|0.164	0	0	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216299458	216299458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FN1-584	NM_212476	exon2	c.G238A	p.G80R	TTCCTCCATAACA	.	135	19	75	0	.	0	0	0	0	0
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228883336	228883336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SPHKAP-167	NM_030623	exon7	c.G2234A	p.R745K	GTCTCCCTCCTTC	.	145	30	109	1	.	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	20	20	3	3	.	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	13	13	0	0	G|0.122;C|0.878	0	0	0	0	0
CD93	22918	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065458	23065458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CD93-153	NM_012072	exon1	c.T1372G	p.W458G	GCACCCAGCCTGG	.	132	28	59	1	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	35	19	4	0	C|0.769;T|0.231	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	16	9	0	0	C|0.615;A|0.385	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	21	21	0	0	T|0.311;C|0.689	0	0	0	0	0
KCNG1	3755	broad.mit.edu	37	20	49626376	49626376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KCNG1-515	NM_002237	exon2	c.G500T	p.R167L	TAGCGGCGCTTGC	.	153	10	40	0	.	0	0	0	0	0
KCNQ2	3785	hgsc.bcm.edu	37	20	62038378	62038378	+	Silent	SNP	A	A	T	rs1801471	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KCNQ2-92	NM_172107	exon17	c.T2238A	p.P746P	GTGGGCAGGCGGC	.	10	5	0	0	A|0.189;T|0.811	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001037335	exon9	c.T5462G	p.L1821R	ACGGCCAGGGTGT	.	52	27	3	0	A|0.739;C|0.261	0	0	0	0	0
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62724242	62724242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	OPRL1-69	NM_000913	exon2	c.C169T	p.L57F	GTGGGGCTCTACC	.	163	29	107	0	.	0	0	0	0	0
DOPEY2	9980	broad.mit.edu	37	21	37635944	37635944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DOPEY2-91	NM_005128	exon25	c.C5416T	p.L1806F	CTGCTTCTCAGGT	.	53	4	52	0	.	0	0	0	0	0
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43808632	43808632	+	Missense_Mutation	SNP	C	C	T	rs139484231		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TMPRSS3-155	NM_001256317	exon5	c.G326A	p.R109Q	CCCACCCGGACTG	.	189	32	123	1	C|1.000;T|0.000	0	0	0	0	0
CRYBB3	1417	bcgsc.ca	37	22	25601196	25601196	+	Silent	SNP	C	C	G	rs9608378	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CRYBB3-90	NM_004076	exon5	c.G337G	p.A113A	AGTCCACATCACA	.	59	6	134	0	C|0.377;G|0.623	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	52	17	0	0	A|0.354;G|0.646	0	0	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	C	rs12159707		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C22orf26-90	NM_018280	exon1	c.C83G	p.P28R	GGGTTGGGGGGGG	.	13	7	0	0	A|0.248;C|0.000;G|0.752	0	0	0	0	0
FAM19A5	25817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	49042499	49042499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FAM19A5-90	NM_001082967	exon2	c.G203A	p.C68Y	CCCGCTGTGCGTG	.	211	72	52	0	.	0	0	0	0	0
ULK4	54986	bcgsc.ca	37	3	41756965	41756965	+	Missense_Mutation	SNP	C	C	T	rs61744388	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ULK4-297	NM_017886	exon24	c.G2551A	p.V851I	GCACTACAGGCAT	.	126	6	98	0	C|0.772;T|0.228	0	0	0	0	0
SETD2	29072	bcgsc.ca	37	3	47162661	47162661	+	Silent	SNP	A	A	G	rs6767907	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SETD2-1273	NM_014159	exon3	c.T3465C	p.N1155N	CAGGCGATTATCT	.	74	5	91	0	A|0.343;G|0.657	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126739102	126739102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PLXNA1-93	NM_032242	exon20	c.G3953A	p.G1318D	GTGCCGGCATCCC	.	126	41	119	0	.	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PRR23C-23	NM_001134657	exon1	c.A120C	p.R40R	CGCCGCTCGGGAT	.	50	12	2	0	T|0.848;G|0.152	0	0	0	0	0
SAMD7	344658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169654233	169654233	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SAMD7-91	NM_182610	exon8	c.C1148A	p.S383X	TTCAGTCACAGGT	.	94	24	130	1	.	0	0	0	0	0
CLCN2	1181	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184072696	184072696	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CLCN2-90	NM_001171087	exon13	c.C1392T	p.V464V	ACCAATGACAAAG	.	474	131	480	4	.	0	0	0	0	0
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184072697	184072697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CLCN2-90	NM_001171087	exon13	c.T1391G	p.V464G	CCAATGACAAAGA	.	473	129	478	1	.	0	0	0	0	0
LRRC15	131578	hgsc.bcm.edu	37	3	194080017	194080213	+	Frame_Shift_Del	DEL	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LRRC15-71	NM_001135057	exon3	c.1578_1889del	p.526_588del	GCTCCAGCCTGCC	.	97	0	89	0	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	69	12	21	0	T|0.980;C|0.020	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	17	15	2	0	C|1.000;|0.000	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	45	12	8	0	.	0	0	0	0	0
FAM200B	285550	broad.mit.edu	37	4	15689928	15689928	+	Missense_Mutation	SNP	G	G	A	rs4235380	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001145191	exon2	c.G1328A	p.S443N	AACTGAGTTTAAA	.	110	3	156	0	G|0.679;A|0.321	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	4	4	0	0	G|0.794;C|0.206	0	0	0	0	0
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74313330	74313330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	AFP-91	NM_001134	exon8	c.G995A	p.R332K	TAAACAGGTTTTT	.	109	29	132	0	.	0	0	0	0	0
CXCL9	4283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76926002	76926002	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CXCL9-227	NM_002416	exon3	c.C236G	p.S79X	TCTGCTGAATCTG	.	35	10	60	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537151	88537151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DSPP-90	NM_014208	exon5	c.G3337A	p.D1113N	AGCAGCGATAGCA	.	185	63	78	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537162	88537162	+	Silent	SNP	C	C	T	rs200745922	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DSPP-90	NM_014208	exon5	c.C3348T	p.D1116D	CAGTGACAGCAGT	.	199	44	94	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537234	88537234	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DSPP-90	NM_014208	exon5	c.C3420T	p.N1140N	CAGCAACAGCAGT	.	560	29	418	4	.	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	4	4	0	0	G|0.022;A|0.978	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123201033	123201033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	KIAA1109-80	NM_015312	exon49	c.A8695G	p.I2899V	ATCAGTATCAACA	.	109	39	92	0	.	0	0	0	0	0
CCRN4L	25819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	139966424	139966424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CCRN4L-91	NM_012118	exon3	c.G1092A	p.W364X	TACCTGGAAGATC	.	176	51	167	0	.	0	0	0	0	0
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144469148	144469148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SMARCA5-227	NM_003601	exon22	c.A2840G	p.Y947C	AAAACTATACTGA	.	65	11	91	0	.	0	0	0	0	0
PALLD	23022	broad.mit.edu;bcgsc.ca	37	4	169606648	169606648	+	Missense_Mutation	SNP	A	A	T	rs140454899	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PALLD-94	NM_001166108	exon6	c.A1273T	p.T425S	AGTCCAACTTCAT	.	66	5	66	0	A|0.998;T|0.002	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	6	6	0	0	T|0.352;C|0.648	0	0	0	0	0
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14758635	14758635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKH-91	NM_054027	exon3	c.G386A	p.R129K	GCCCTTCTCGTCT	.	92	19	91	0	.	0	0	0	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407592	55407592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKRD55-91	NM_024669	exon10	c.C983A	p.P328H	GGAGGGGGTCGAG	.	48	3	49	0	.	0	0	0	0	0
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70819810	70819810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	BDP1-92	NM_018429	exon25	c.T5432G	p.L1811R	TTGCCCTGGATGG	.	136	35	157	0	.	0	0	0	0	0
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79855316	79855316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ANKRD34B-69	NM_001004441	exon5	c.G523C	p.D175H	ACCCATCTATATC	.	71	25	57	0	.	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CHSY3-25	NM_175856	exon1	c.G450C	p.P150P	CCGGCCGGGGAGT	.	7	7	0	0	G|0.479;C|0.521	0	0	0	0	0
PWWP2A	114825	hgsc.bcm.edu	37	5	159546158	159546158	+	Missense_Mutation	SNP	G	G	A	rs200008605		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PWWP2A-68	NM_052927	exon1	c.C238T	p.R80C	GGCTGCGGGCGAG	.	4	4	0	0	G|0.997;A|0.003	0	0	0	0	0
SPDL1	54908	bcgsc.ca	37	5	169021610	169021610	+	Silent	SNP	C	C	T	rs4493692	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_017785	exon7	c.C816T	p.L272L	TCAGCTCATCAGT	.	378	10	367	3	C|0.346;T|0.654	0	0	0	0	0
FAM153A	285596	bcgsc.ca	37	5	177171892	177171892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FAM153A-23	NM_173663	exon4	c.G105A	p.M35I	GACCTTCATCGCC	.	1415	129	1295	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	29	29	0	0	A|0.006;G|0.994	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	22	14	0	0	G|0.546;T|0.454	0	0	0	0	0
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917535	30917535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	DPCR1-90	NM_080870	exon2	c.G1294A	p.E432K	GCCAACGAGAACA	.	252	68	231	0	.	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324602	31324604	+	In_Frame_Del	DEL	TCT	TCT	-	rs67385961		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	HLA-B-90	NM_005514	exon2	c.204_206del	p.68_69del	GGCTCCTCTCTCG	.	223	0	150	0	.	0	0	0	0	0
PNPLA1	285848	broad.mit.edu	37	6	36263170	36263170	+	Silent	SNP	C	C	T	rs139173161		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PNPLA1-137	NM_001145717	exon5	c.C744T	p.Y248Y	AGGGTACGAGGAT	.	245	6	132	0	C|1.000;T|0.000	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	26	26	0	0	C|0.673;A|0.327	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	4	4	0	0	G|0.000;C|1.000	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	4	4	0	0	T|0.000;G|1.000	0	0	0	0	0
VNN3	55350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	133047878	133047878	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	VNN3-90	.	.	.	.	ATGCTGGTGTTGT	.	262	57	181	0	.	0	0	0	0	0
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	134494667	134494669	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAC	GAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SGK1-981	NM_001143676	exon6	c.549_551del	p.183_184del	GGATTGGACGACG	.	103	16	70	0	.	0	0	0	0	0
MTRF1L	54516	hgsc.bcm.edu	37	6	153323806	153323806	+	Silent	SNP	A	A	G	rs3818126	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MTRF1L-90	NM_019041	exon1	c.T15C	p.V5V	CCACAGAACCCGG	.	12	4	6	0	A|0.800;G|0.200	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	95	32	3	0	T|0.654;G|0.346	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	8	6	0	0	G|0.411;T|0.589	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	23	6	2	0	G|0.456;C|0.544	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	60	33	11	0	.	0	0	0	0	0
GNB2	2783	broad.mit.edu	37	7	100274423	100274424	+	Splice_Site	DEL	GT	GT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GNB2-229	.	.	.	.	CTCAAGGTGTGTG	.	109	6	97	0	.	0	0	0	0	0
ZNF212	7988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148951008	148951008	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF212-91	NM_012256	exon5	c.G990A	p.Q330Q	GCAGCAGCTGGCC	.	78	19	70	0	.	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	25	5	1	0	G|0.907;A|0.093	0	0	0	0	0
RP1L1	94137	bcgsc.ca	37	8	10469233	10469233	+	Missense_Mutation	SNP	A	A	G	rs35602868	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	RP1L1-139	NM_178857	exon4	c.T2375C	p.L792P	TCCCCCAGGCTGG	.	239	8	137	1	A|0.605;G|0.395	0	0	0	0	0
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28309857	28309857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FBXO16-227	NM_172366	exon6	c.C644T	p.A215V	GGAAGTGCTTTCT	.	116	23	131	0	.	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	8	7	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	17	17	2	2	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	24	23	0	0	A|0.118;G|0.882	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649601	144649601	+	Silent	SNP	A	A	G	rs13268196		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001100878	exon14	c.T1968C	p.A656A	GGCCACAGCCGGC	.	14	13	0	0	A|0.057;G|0.943	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	8	8	0	0	T|0.010;C|0.990	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	OPLAH-68	.	.	.	.	CCCGAGCCCCCCG	.	10	10	0	0	.	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	6	6	0	0	G|0.108;T|0.892	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	16	16	0	0	G|0.992;C|0.006	0	0	0	0	0
LMX1B	4010	broad.mit.edu	37	9	129376780	129376780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	LMX1B-90	NM_001174146	exon1	c.C52A	p.Q18K	CGCGGGCAGACGG	.	169	10	61	0	.	0	0	0	0	0
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139360883	139360883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_014866	exon7	c.G3961A	p.D1321N	GAGGATCGTACCT	.	183	40	100	0	.	0	0	0	0	0
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11204435	11204435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ARHGAP6-227	NM_006125	exon5	c.T1194G	p.D398E	TTTCTTATCTCTG	.	80	32	123	0	.	0	0	0	0	0
ATP6AP2	10159	hgsc.bcm.edu	37	X	40458870	40458870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ATP6AP2-130	NM_005765	exon7	c.G615T	p.K205N	AGCCAAGGATCAT	.	43	4	71	0	.	0	0	0	0	0
PHF8	23133	broad.mit.edu;bcgsc.ca	37	X	54014243	54014243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	PHF8-133	NM_001184896	exon15	c.A1973G	p.D658G	CTCTCGTCAATCT	.	109	5	153	0	.	0	0	0	0	0
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102471120	102471120	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	BEX4-62	NM_001080425	exon3	c.C39T	p.N13N	TCTCAACGGGGAA	.	181	81	262	2	.	0	0	0	0	0
MIR542	664617	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133675462	133675462	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	.	.	.	.	GTCTGAGATCTGT	.	44	26	42	0	.	0	0	0	0	0
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135432457	135432457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	GPR112-183	NM_153834	exon6	c.A6592G	p.T2198A	ATATCCACTGGGG	.	140	67	187	2	.	0	0	0	0	0
ARHGAP4	393	ucsc.edu;bcgsc.ca	37	X	153174968	153174968	+	Silent	SNP	G	G	A	rs61749033	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	ARHGAP4-227	NM_001164741	exon21	c.C2556T	p.G852G	CCCTGCGCCCACC	.	392	239	229	3	G|0.996;A|0.004	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	rs61519723	bycluster;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	NCOR2-229	NM_006312	exon39	c.5500_5501insCGGC	p.S1834fs	CGCTGCTCTGCTC	.	110	20	7	0	GCCGCTGCT|1.000;|0.000	0	0	0	0	0
MEGF11	84465	broad.mit.edu	37	15	66209208	66209209	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	MEGF11-69	NM_032445	exon17	c.2173_2174insC	p.C725fs	AGTGGCAGGCCCC	.	148	9	67	0	.	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_015077	exon2	c.313_314insC	p.A105fs	GCTGCTGCGGCCG	.	10	10	0	0	-|0.009;C|0.991	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	.	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	TGCTGCCAGCCTT	.	241	0	109	0	.	0	0	0	0	0
AATK	9625	hgsc.bcm.edu;broad.mit.edu	37	17	79093270	79093271	+	In_Frame_Ins	INS	-	-	GGGCGT	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	AATK-933	NM_001080395	exon13	c.3994_3995insACGCCC	p.A1332delinsTPA	AGGGAGCGGGCGT	.	86	14	12	0	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;bcgsc.ca	37	5	127685053	127685054	+	Frame_Shift_Ins	INS	-	-	CAGTCCCATCCAA	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	FBN2-146	NM_001999	exon23	c.2975_2976insTTGGATGGGACTG	p.G992fs	ACACGGCCAGTCC	.	113	4	134	0	.	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	43	15	2	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
COG8	84342	hgsc.bcm.edu;bcgsc.ca	37	16	69368962	69368963	+	Missense_Mutation	DNP	AT	AT	TC	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	.	COG8-91	NM_032382	exon3	c.A874G	p.I292D	AGAAGATGGCACG	.	252	0	184	0	.	0	0	0	0	0