Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 C1orf170 84808 bcgsc.ca 37 1 915350 915350 + RNA SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C1orf170-68 . . . . TGTCAGGTTGCGG . 279 12 559 3 . 0 0 0 0 0 TNFRSF25 8718 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 6525618 6525618 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNFRSF25-714 NM_148966 exon2 c.G42A p.A14A GAGGAGCGCCTGG . 174 141 138 0 . 2 1 1 0 0 KLHL21 9903 broad.mit.edu;bcgsc.ca 37 1 6659127 6659127 + Silent SNP G G A rs141078522 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KLHL21-514 NM_014851 exon2 c.C1407T p.N469N GAGTCCGTTTAGA . 187 6 225 0 A|0.000;C|0.000;G|1.000 6 6 0 0 0 SRM 6723 hgsc.bcm.edu 37 1 11119899 11119899 + Silent SNP T T C rs7545802 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SRM-90 NM_003132 exon1 c.A102G p.S34S CTGCAGTGACAGG . 5 5 0 0 T|0.001;C|0.999 27 0 27 0 0 PRAMEF19 645414 broad.mit.edu 37 1 13474795 13474798 + Frame_Shift_Del DEL CTTA CTTA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001099790 exon3 c.1331_1334del p.444_445del GGCTCCCTTACTT . 470 250 863 2 . 0 0 0 0 0 MFAP2 4237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17302155 17302155 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MFAP2-514 NM_017459 exon7 c.C357T p.N119N GACCTCGTTGAGA . 96 73 183 0 . 1 1 0 0 0 IGSF21 84966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 18691904 18691904 + Missense_Mutation SNP C C T rs144142024 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IGSF21-156 NM_032880 exon6 c.C728T p.T243M CCTACACGGAGCG . 154 125 274 1 C|1.000;T|0.000 3 3 0 0 0 EMC1 23065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19545802 19545802 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_015047 exon23 c.C2977T p.R993X TTTATCGCCAGGC . 70 41 105 0 . 33 15 18 0 0 EPHB2 2048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 23222940 23222940 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EPHB2-1381 NM_004442 exon9 c.G1737A p.T579T GTACACGGACAAG . 78 62 143 0 . 12 0 12 0 0 FUCA1 2517 hgsc.bcm.edu 37 1 24194748 24194748 + Missense_Mutation SNP G G C rs2070956 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FUCA1-153 NM_000147 exon1 c.C29G p.P10R CCCGCCGGCCGCG . 11 8 0 0 G|0.177;C|0.823 1 0 1 0 0 MYOM3 127294 broad.mit.edu 37 1 24407850 24407853 + Frame_Shift_Del DEL CAAA CAAA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYOM3-93 NM_152372 exon19 c.2374_2377del p.792_793del TGCACTCAAACAG . 322 11 504 0 . 0 0 0 0 0 SEPN1 57190 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 26139207 26139207 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEPN1-92 . . . . GGCCTTCGACCGA . 62 50 90 0 . 12 1 11 0 0 CATSPER4 378807 broad.mit.edu 37 1 26527381 26527381 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CATSPER4-91 NM_198137 exon8 c.C1048T p.R350C GTCGCCCGCTCGG . 147 5 210 1 . 0 0 0 0 0 C1orf172 126695 bcgsc.ca 37 1 27277925 27277925 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C1orf172-154 NM_152365 exon2 c.C947T p.S316L CCCTCCGAGGTCT . 199 7 265 0 . 0 0 0 0 0 RBBP4 5928 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 33134949 33134949 + Silent SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RBBP4-227 NM_005610 exon7 c.A879G p.S293S AGGATCAGCTGAC . 100 87 143 2 . 0 0 0 0 0 DLGAP3 58512 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 35365799 35365799 + Missense_Mutation SNP C C T rs140339373 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DLGAP3-71 NM_001080418 exon2 c.G1183A p.G395S AGCTGCCGCTCCG . 95 7 125 0 C|0.999;T|0.000 4 3 1 0 0 KIAA0754 643314 broad.mit.edu 37 1 39879079 39879079 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_015038 exon1 c.3142delA p.T1048fs GTGCCCACCCCAG . 22 9 16 0 . 0 0 0 0 0 BMP8B 656 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 40230376 40230376 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BMP8B-91 NM_001720 exon4 c.C787T p.R263W CTGCCCGAGGGGT . 996 157 1460 0 . 0 0 0 0 0 FOXJ3 22887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 42657281 42657281 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FOXJ3-228 NM_001198851 exon11 c.C1044G p.S348R GGACAGGCTGCTT . 169 144 246 0 . 6 0 6 0 0 LRRC41 10489 broad.mit.edu;bcgsc.ca 37 1 46751559 46751559 + Missense_Mutation SNP G G A rs145805978 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRC41-156 NM_006369 exon4 c.C970T p.R324C TCCGGCGTGTTAC . 48 5 84 0 G|1.000;A|0.000 17 16 1 0 0 C1orf87 127795 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 60456488 60456488 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C1orf87-154 NM_152377 exon12 c.C1498T p.R500X TGGCTCGTTCCTT . 64 35 125 1 . 0 0 0 0 0 C1orf87 127795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 60463390 60463390 + Missense_Mutation SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C1orf87-154 NM_152377 exon11 c.G1371C p.Q457H GAAGGGCTGGGAG . 85 73 125 0 . 0 0 0 0 0 FOXD3 27022 hgsc.bcm.edu;broad.mit.edu 37 1 63789205 63789207 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FOXD3-226 NM_012183 exon1 c.476_478del p.159_160del GCCCGCAGAAGAA . 209 20 301 0 . 0 0 0 0 0 SGIP1 84251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67155933 67155933 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SGIP1-93 NM_032291 exon17 c.C1504T p.R502W TTAGCGCGGGCTG . 73 61 85 0 . 0 0 0 0 0 SGIP1 84251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 67195022 67195022 + Silent SNP G G A rs150154953 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SGIP1-93 NM_032291 exon20 c.G1818A p.P606P CAACCCGTCCCCA . 146 107 180 0 G|0.999;A|0.001 1 1 0 0 0 SEP15 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 87369102 87369102 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEP15-68 . . . . TGCCTCCGATGAA . 87 75 97 0 . 53 4 49 0 0 LOC339524 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 87599339 87599339 + RNA SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . . . . . CTATATGTGGCAG . 144 124 205 1 . 1 0 1 0 0 LPPR5 0 broad.mit.edu 37 1 99470095 99470097 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001010861 exon1 c.131_133del p.44_45del CGTGGCAGAAGAA . 234 8 290 0 . 0 0 0 0 0 KCNC4 3749 bcgsc.ca 37 1 110766454 110766454 + Missense_Mutation SNP G G A rs59123361 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCNC4-154 NM_001039574 exon2 c.G1547A p.R516Q CCCCCCGGGACAG . 93 4 200 0 G|0.919;A|0.081 4 4 0 0 0 OLFML3 56944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 114524270 114524270 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OLFML3-68 NM_020190 exon3 c.G1100A p.R367H TTCCCCGCAGATA . 85 11 120 0 . 0 0 0 0 0 TSPAN2 10100 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 115615562 115615562 + Missense_Mutation SNP A A G rs199774469 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TSPAN2-226 NM_005725 exon2 c.T136C p.S46P CTGATGATAACTC . 97 75 127 2 A|0.999;G|0.001 0 0 0 0 0 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 150530506 150530506 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADAMTSL4-92 NM_019032 exon14 c.2263delG p.G755fs GAATTTGGGGGGG . 52 14 40 0 . 0 0 0 0 0 THEM4 117145 hgsc.bcm.edu 37 1 151881885 151881885 + Missense_Mutation SNP A A C rs3748805 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . THEM4-522 NM_053055 exon1 c.T50G p.L17R GGCGGCAGGCACA . 9 9 0 0 T|0.073;G|0.921 1 0 1 0 0 RPTN 126638 bcgsc.ca 37 1 152128212 152128212 + Missense_Mutation SNP C C G rs143744326 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RPTN-68 NM_001122965 exon3 c.G1363C p.D455H GTCTGTCTGTCTG . 187 6 273 0 C|0.978;G|0.022 0 0 0 0 0 LCE2B 26239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152659333 152659333 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LCE2B-92 NM_014357 exon2 c.A14G p.Q5R GCCAGCAAAACCA . 80 69 86 0 . 0 0 0 0 0 HCN3 57657 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155257602 155257602 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HCN3-154 NM_020897 exon8 c.G1673A p.R558H GGAAGCGCTCCGA . 254 39 456 1 . 8 8 0 0 0 GON4L 54856 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 155823172 155823172 + Nonsense_Mutation DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GON4L-93 NM_001037533 exon2 c.400delA p.M134X GTGTCATTTTTTT . 110 33 131 0 . 0 0 0 0 0 MEF2D 4209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156437983 156437983 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MEF2D-659 NM_005920 exon11 c.G1356A p.A452A GGGAGGCGCAGGG . 73 63 40 0 . 16 0 16 0 0 NES 10763 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 156640677 156640677 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NES-520 NM_006617 exon4 c.G3303A p.P1101P CTGCCCCGGGCCT . 52 47 48 0 . 2 0 2 0 0 HDGF 3068 bcgsc.ca 37 1 156713558 156713558 + Missense_Mutation SNP G G A rs4399146 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HDGF-226 NM_001126050 exon5 c.C650T p.P217L TCAGAGGGGGTGC . 36 4 52 0 G|0.789;A|0.211 63 63 0 0 0 CD5L 922 bcgsc.ca;mdanderson.org 37 1 157805632 157805632 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CD5L-91 NM_005894 exon3 c.G369A p.S123S CTCACACGATGCC . 42 31 57 2 . 0 0 0 0 0 NHLH1 4807 hgsc.bcm.edu 37 1 160340658 160340658 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NHLH1-69 NM_005598 exon2 c.G137A p.R46Q AGGCCCGAGGCCC . 24 21 2 0 . 0 0 0 0 0 UCK2 7371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 165865482 165865482 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UCK2-91 NM_012474 exon4 c.C412A p.L138M GGGATCCTGGCCT . 145 19 190 0 . 7 7 0 0 0 ILDR2 387597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 166891885 166891885 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ILDR2-91 NM_199351 exon8 c.C1156T p.R386C GCCCGCGGCTTGC . 61 45 114 0 . 0 0 0 0 0 SELP 6403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 169559391 169559391 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SELP-94 NM_003005 exon16 c.C2488T p.P830S CTTAAGGACTCGG . 43 35 63 0 . 0 0 0 0 0 RASAL2 9462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 178412191 178412191 + Missense_Mutation SNP C C T rs200438546 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RASAL2-155 NM_170692 exon8 c.C1309T p.R437C AAATCACGTTTCC . 107 29 145 0 . 1 0 1 0 0 CACNA1E 777 broad.mit.edu 37 1 181702849 181702849 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CACNA1E-95 NM_000721 exon21 c.C3225T p.P1075P CATCCCCGACGTG . 342 7 436 0 . 0 0 0 0 0 LGR6 59352 broad.mit.edu 37 1 202287206 202287206 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LGR6-160 NM_001017403 exon18 c.1775delT p.V592fs GGCCTGTCCCCCT . 101 10 104 0 . 0 0 0 0 0 PPFIA4 8497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 203025515 203025515 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PPFIA4-230 NM_015053 exon5 c.C601A p.R201R GTGTCTCGGGAAG . 147 118 262 1 . 0 0 0 0 0 KCNK2 3776 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 215408439 215408439 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCNK2-90 NM_001017425 exon7 c.C1232T p.T411M GTTTGACGCCACA . 46 36 87 1 . 11 0 11 0 0 ACBD3 64746 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 226342403 226342403 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ACBD3-226 NM_022735 exon6 c.C1035T p.S345S TTTTTCGGAGCTG . 150 134 194 0 . 12 0 12 0 0 PARP1 142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 226555191 226555191 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PARP1-727 NM_001618 exon17 c.C2396T p.T799I ATGTCAGTTTTGA . 110 24 157 0 . 1 0 1 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228504670 228504670 + Missense_Mutation SNP C C T rs11810627 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OBSCN-403 NM_001271223 exon62 c.C16417T p.R5473W TCTGCGCGGCTCA . 10 9 0 0 C|0.643;T|0.357 5 0 5 0 0 OBSCN 84033 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 228509610 228509610 + Missense_Mutation SNP C C T rs182318410 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OBSCN-403 NM_001271223 exon66 c.C17939T p.P5980L AAAGTCCGGCTGA . 44 32 68 1 C|0.997;T|0.003 3 0 3 0 0 HIST3H3 8290 broad.mit.edu;bcgsc.ca 37 1 228612628 228612628 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HIST3H3-90 NM_003493 exon1 c.G399A p.G133G CCGCTCCCCGCGG . 209 12 322 1 . 0 0 0 0 0 URB2 9816 broad.mit.edu;bcgsc.ca 37 1 229768022 229768022 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . URB2-174 NM_014777 exon3 c.C133A p.L45I GTGTTACTTGATT . 158 8 222 1 . 0 0 0 0 0 ARV1 64801 hgsc.bcm.edu 37 1 231131567 231131567 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARV1-154 NM_022786 exon4 c.510delA p.A170fs GACGGCAAAAAAA . 32 23 71 1 . 0 0 0 0 0 SLC35F3 148641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 234367444 234367444 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC35F3-92 NM_173508 exon3 c.G565A p.V189I GGGCACGTCTGCA . 216 172 338 0 . 1 0 1 0 0 FMN2 56776 hgsc.bcm.edu;bcgsc.ca 37 1 240370291 240370295 + Frame_Shift_Del DEL AGGTT AGGTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AGGTT AGGTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FMN2-145 NM_020066 exon5 c.2179_2183del p.727_728del GCTCTCAGGTTAG . 121 92 197 1 . 0 0 0 0 0 NET1 10276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5498113 5498113 + Missense_Mutation SNP C C T rs139037982 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NET1-290 NM_001047160 exon11 c.C1261T p.R421W AACGAACGGCACT . 103 46 69 0 C|1.000;T|0.000 11 5 6 0 0 TAF3 83860 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 8007680 8007682 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TAF3-69 NM_031923 exon3 c.2207_2209del p.736_737del AAAAAGAGAAGGA . 160 65 121 0 . 0 0 0 0 0 OTUD1 220213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 23729556 23729556 + Silent SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OTUD1-433 NM_001145373 exon1 c.G1170C p.V390V GAATGTGAATATC . 114 51 108 0 . 12 4 8 0 0 ARHGAP21 57584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 24873649 24873649 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARHGAP21-235 NM_020824 exon26 c.C5569T p.R1857C GTAGGCGTTCCCT . 244 102 196 0 . 45 20 25 0 0 KIAA1462 57608 hgsc.bcm.edu;bcgsc.ca 37 10 30316849 30316852 + Frame_Shift_Del DEL TGTT TGTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TGTT TGTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA1462-72 NM_020848 exon3 c.2225_2228del p.742_743del GGCCTCTGTTTGT . 232 92 190 1 . 0 0 0 0 0 ERCC6 2074 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50691492 50691492 + Missense_Mutation SNP A A C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ERCC6-1153 NM_000124 exon9 c.T1892G p.M631R TCCTGCATCAATC . 230 108 149 1 . 0 0 0 0 0 SGMS1 259230 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 52103641 52103641 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SGMS1-227 NM_147156 exon7 c.C234T p.N78N ATGGCCGTTCTTG . 138 29 80 1 . 6 2 4 0 0 PCDH15 65217 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 55581863 55581863 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDH15-193 NM_001142763 exon35 c.C5644A p.P1882T TCTGAGGGTCTGT . 114 62 76 2 . 0 0 0 0 0 IPMK 253430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 59956132 59956132 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IPMK-228 NM_152230 exon6 c.C956T p.A319V TGACGCGCATACA . 83 34 56 0 . 2 1 1 0 0 ANK3 288 broad.mit.edu 37 10 61828580 61828580 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ANK3-107 NM_020987 exon37 c.12059delA p.K4020fs TGCATCTTTTTTT . 162 7 122 0 . 0 0 0 0 0 RUFY2 55680 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 70105818 70105820 + In_Frame_Del DEL TTT TTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TTT TTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RUFY2-91 NM_017987 exon17 c.1726_1728del p.576_576del TGCTTCTTTGTCT . 65 27 56 0 . 0 0 0 0 0 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70426853 70426853 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TET1-663 NM_030625 exon7 c.C4513T p.R1505C CGGCAGCGTACAG . 138 59 109 0 . 0 0 0 0 0 NPFFR1 64106 hgsc.bcm.edu 37 10 72014863 72014863 + Silent SNP G G A rs60225321 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NPFFR1-22 NM_022146 exon4 c.C1143T p.S381S CAGCCCGGAGTCG . 18 9 0 0 G|0.929;A|0.071 0 0 0 0 0 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 73551036 73551036 + Missense_Mutation SNP G G A rs201887949 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH23-563 NM_022124 exon45 c.G6197A p.R2066Q ACAACCGGCCCAC . 207 35 169 0 G|0.998;A|0.002 0 0 0 0 0 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73560424 73560424 + Missense_Mutation SNP G G A rs199903227 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH23-563 NM_022124 exon51 c.G7394A p.R2465Q TGGACCGGGAGAA . 155 61 172 0 . 0 0 0 0 0 SYNPO2L 79933 broad.mit.edu;bcgsc.ca 37 10 75414029 75414029 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SYNPO2L-91 NM_001114133 exon2 c.C115T p.R39W GGCTCCGTCTTCG . 162 59 136 3 . 0 0 0 0 0 DLG5 9231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 79603319 79603319 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DLG5-98 NM_004747 exon6 c.G1010A p.R337H TCCAGGCGGCTCA . 311 155 277 1 . 22 14 8 0 0 GRID1 2894 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 87675969 87675969 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRID1-142 NM_017551 exon5 c.G754A p.D252N GGCTGTCCTTGGA . 65 31 55 1 . 2 1 1 0 0 GRID1 2894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 87898579 87898579 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRID1-142 NM_017551 exon4 c.C723T p.N241N TACCTCGTTGATG . 170 81 130 0 . 0 0 0 0 0 TNKS2 80351 hgsc.bcm.edu 37 10 93601946 93601946 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNKS2-541 NM_025235 exon16 c.1857delA p.T619fs CCCTACAAAAAAA . 105 53 76 0 . 0 0 0 0 0 HELLS 3070 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 96353307 96353307 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HELLS-92 NM_018063 exon18 c.C2023T p.R675X AGTACACGAGCTG . 200 99 134 1 . 0 0 0 0 0 MORN4 118812 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 99376052 99376052 + Missense_Mutation SNP C C T rs150577682 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MORN4-90 NM_001098831 exon5 c.G409A p.A137T TGGAGGCGCTCTG . 114 55 91 1 C|0.999;T|0.000 4 3 1 0 0 PI4K2A 55361 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 99426276 99426276 + Missense_Mutation SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PI4K2A-226 NM_018425 exon7 c.C1166G p.S389W AGATATCGGACCC . 56 15 56 0 . 14 0 14 0 0 CNNM1 26507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 101124242 101124242 + Silent SNP C C T rs142898303 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CNNM1-68 NM_020348 exon5 c.C2097T p.G699G CTATGGCGTCCCA . 83 38 61 0 C|1.000;T|0.000 0 0 0 0 0 FBXW4 6468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103371420 103371420 + Missense_Mutation SNP G G A rs140286143 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FBXW4-226 NM_022039 exon8 c.C1084T p.R362W ACAGCCGTACAAC . 206 82 204 0 G|1.000;A|0.000 122 56 66 0 0 C10orf76 79591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103716388 103716388 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C10orf76-90 NM_024541 exon22 c.C1671T p.R557R GTGCATGCGGATA . 203 35 150 0 . 15 14 1 0 0 NFKB2 4791 hgsc.bcm.edu 37 10 104159196 104159196 + Silent SNP A A G rs4919633 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NFKB2-522 NM_001077494 exon13 c.A1269G p.P423P GGAGCCAAGCGCC . 9 9 0 0 A|0.009;G|0.991 7 0 7 0 0 PDCD11 22984 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 105177645 105177645 + Missense_Mutation SNP G G A rs11598673 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PDCD11-275 NM_014976 exon14 c.G1867A p.A623T GAGCCTGCAGGAC . 279 134 223 2 G|0.954;T|0.046 3 2 1 0 0 COL17A1 1308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 105803593 105803593 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL17A1-95 NM_000494 exon34 c.C2424T p.I808I AGTCACGATCTTG . 209 93 189 0 . 0 0 0 0 0 RBM20 282996 broad.mit.edu 37 10 112541584 112541584 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001134363 exon2 c.1217delC p.A406fs GTGTGGCCCCCCT . 269 10 209 0 . 0 0 0 0 0 ADRA2A 150 hgsc.bcm.edu;broad.mit.edu 37 10 112838325 112838327 + In_Frame_Del DEL GGC GGC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 GGC GGC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADRA2A-90 NM_000681 exon1 c.571_573del p.191_191del AAGAAGGGCGGCG . 77 15 19 0 . 0 0 0 0 0 VWA2 340706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 116049187 116049187 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . VWA2-156 NM_001272046 exon12 c.C2061T p.H687H GATCCACGTGGCA . 265 38 240 0 . 0 0 0 0 0 SEC23IP 11196 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 121691801 121691803 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEC23IP-93 NM_007190 exon16 c.2729_2731del p.910_911del AGATCAAAGAAGA . 109 32 83 0 . 0 0 0 0 0 MIR5694 100847064 bcgsc.ca;mdanderson.org 37 10 122358921 122358921 + RNA SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . . . . . CTGAGTGCTCACT . 140 57 105 0 . 0 0 0 0 0 FANK1 92565 hgsc.bcm.edu 37 10 127585221 127585221 + Nonsense_Mutation SNP C C T rs202109621 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FANK1-91 NM_145235 exon1 c.C10T p.Q4X GAGCCCCAGAGTA . 115 6 20 0 . 1 1 0 0 0 KNDC1 85442 hgsc.bcm.edu 37 10 135000124 135000124 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KNDC1-229 NM_152643 exon6 c.C1272T p.D424D CAGGGACGATGAG . 19 12 1 0 . 18 9 9 0 0 KNDC1 85442 hgsc.bcm.edu 37 10 135000148 135000148 + Silent SNP T T C rs3810965 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KNDC1-229 NM_152643 exon6 c.T1296C p.A432A AGGAGCTAGGCAG . 8 5 2 0 T|0.607;C|0.393 10 10 0 0 0 KNDC1 85442 hgsc.bcm.edu 37 10 135000159 135000159 + Missense_Mutation SNP A A G rs3810964 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KNDC1-229 NM_152643 exon6 c.A1307G p.E436G AGCTGGAAAGTGC . 6 5 2 0 A|0.608;G|0.392 1 1 0 0 0 PIDD 55367 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 800997 800997 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PIDD-205 NM_145887 exon10 c.C1754T p.T585I AAGTGTGTGACCT . 101 8 158 0 . 4 3 1 0 0 MUC5B 727897 bcgsc.ca 37 11 1271633 1271633 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_002458 exon31 c.C13523A p.P4508Q CCCTTCCAGCACT . 707 541 1117 7 . 0 0 0 0 0 KRTAP5-5 439915 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 1651190 1651190 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KRTAP5-5-23 NM_001001480 exon1 c.C120T p.S40S TGGCTCCGGCTGT . 147 119 36 2 . 0 0 0 0 0 TH 7054 ucsc.edu;bcgsc.ca 37 11 2190951 2190951 + Missense_Mutation SNP C C T rs6356 bycluster;byfrequency;by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TH-90 NM_199292 exon3 c.G334A p.V112M TTAGCACGGCCTT . 203 170 317 3 C|0.652;T|0.348 0 0 0 0 0 OR56A3 390083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5969261 5969261 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR56A3-68 NM_001003443 exon1 c.G685T p.V229L CGAGCTGTGCTGA . 90 71 96 0 . 0 0 0 0 0 FAM160A2 84067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6232915 6232915 + Missense_Mutation SNP G G A rs201012137 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAM160A2-92 NM_032127 exon12 c.C2782T p.R928C CTTGGCGTTCAGG . 54 9 78 0 G|1.000;A|0.000 11 8 3 0 0 ST5 6764 broad.mit.edu 37 11 8724250 8724250 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ST5-227 NM_005418 exon17 c.G2589A p.R863R CATGGGCCGCCGC . 88 4 137 0 . 9 8 1 0 0 TEAD1 7003 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 12923632 12923632 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TEAD1-90 NM_021961 exon10 c.845delA p.Q282fs GCCCTCAAAATGC . 141 25 183 0 . 0 0 0 0 0 NAV2 89797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 19955447 19955447 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NAV2-96 NM_001244963 exon8 c.A1726G p.K576E AGTGCCAAGAAGG . 24 20 32 0 . 0 0 0 0 0 QSER1 79832 hgsc.bcm.edu;bcgsc.ca 37 11 32979554 32979554 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . QSER1-95 NM_001076786 exon8 c.4504delA p.K1502fs AAACGGAAAAAAT . 102 79 102 1 . 0 0 0 0 0 TNKS1BP1 85456 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 57077118 57077119 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNKS1BP1-91 NM_033396 exon6 c.3066_3067del p.1022_1023del CGGATCCTCTCTC . 52 36 65 0 . 0 0 0 0 0 FADS2 9415 hgsc.bcm.edu 37 11 61607885 61607887 + In_Frame_Del DEL TCC TCC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TCC TCC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FADS2-92 NM_004265 exon3 c.398_400del p.133_134del TGTTCTTCCTCCT . 193 14 292 1 . 0 0 0 0 0 SLC22A24 283238 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62850786 62850786 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001136506 exon7 c.G1214A p.R405H ATTCGACGACCCA . 153 129 175 2 . 0 0 0 0 0 LGALS12 85329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 63276041 63276041 + Missense_Mutation SNP C C T rs144263194 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LGALS12-92 NM_001142535 exon2 c.C152T p.T51M ATGTCACGACGAT . 70 56 139 0 C|1.000;T|0.000 0 0 0 0 0 TM7SF2 7108 hgsc.bcm.edu 37 11 64880090 64880090 + Silent SNP G G C rs4930284 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TM7SF2-91 NM_003273 exon2 c.G156C p.P52P CCTGCCGGGGCTG . 5 5 0 0 G|0.005;C|0.995 29 0 29 0 0 LTBP3 4054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65319519 65319519 + Silent SNP G G A rs200551731 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LTBP3-91 NM_001130144 exon8 c.C1455T p.D485D TGGCCCGTCAGGG . 132 110 185 1 G|1.000;A|0.000 27 3 24 0 0 RHOD 29984 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 66838933 66838933 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RHOD-659 NM_014578 exon5 c.G493A p.A165T GTGGGCGCGGTGG . 76 6 40 0 . 0 0 0 0 0 IGHMBP2 3508 broad.mit.edu 37 11 68682296 68682296 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IGHMBP2-90 NM_002180 exon6 c.G717A p.L239L GGTTCTGTGCTGC . 87 4 126 1 . 0 0 0 0 0 KCTD21 283219 ucsc.edu;bcgsc.ca 37 11 77885257 77885257 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCTD21-69 NM_001029859 exon2 c.C344A p.T115K TTCAGTGTGATGT . 70 59 141 2 . 4 0 4 0 0 PICALM 8301 broad.mit.edu 37 11 85694914 85694914 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PICALM-659 NM_007166 exon14 c.C1511A p.S504Y CCCCCAGAATCTA . 79 3 91 0 . 0 0 0 0 0 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92616519 92616519 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAT3-73 NM_001008781 exon23 c.C12897T p.C4299C CGACTGCGACTCC . 162 128 138 0 . 0 0 0 0 0 ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 108138056 108138056 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATM-3419 NM_000051 exon17 c.C2625T p.S875S AGAGAGCCAAAGT . 74 14 129 0 . 0 0 0 0 0 DIXDC1 85458 broad.mit.edu;bcgsc.ca 37 11 111865744 111865744 + Splice_Site SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DIXDC1-91 . . . . TGTAGGCGACCAA . 71 5 104 0 . 0 0 0 0 0 C11orf57 55216 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 111953573 111953576 + Frame_Shift_Del DEL AAAG AAAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AAAG AAAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C11orf57-155 NM_001082969 exon6 c.759_762del p.253_254del AAGGAAAAAGAGA . 22 19 31 0 . 0 0 0 0 0 TIMM8B 26521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 111956053 111956053 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TIMM8B-90 NM_012459 exon2 c.G263A p.R88Q GCAAACCGACTGG . 96 81 148 1 . 106 6 99 1 0 DSCAML1 57453 broad.mit.edu;bcgsc.ca 37 11 117303148 117303148 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DSCAML1-159 NM_020693 exon30 c.C5279T p.T1760I ACGCCAGTACAGA . 140 6 225 0 . 0 0 0 0 0 CD3D 915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118210583 118210583 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CD3D-91 NM_000732 exon3 c.G313A p.A105T TGCCAGCCACGGT . 161 134 235 0 . 6 6 0 0 0 TRIM29 23650 broad.mit.edu;bcgsc.ca 37 11 119983148 119983148 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIM29-291 NM_012101 exon9 c.G1741A p.G581R CAATCCCGTTGCC . 334 8 497 1 . 0 0 0 0 0 GRIK4 2900 broad.mit.edu 37 11 120852883 120852883 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRIK4-92 NM_014619 exon18 c.A2464G p.M822V ATTTTTATGGCTA . 54 3 102 0 . 7 7 0 0 0 VWF 7450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6230433 6230433 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . VWF-163 NM_000552 exon3 c.G127A p.V43I TGTTGACGAAGTC . 266 131 225 0 . 2 2 0 0 0 PLEKHG6 55200 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 6424203 6424203 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLEKHG6-295 NM_001144856 exon4 c.G327A p.R109R GGTGAGGCTGCAC . 184 77 148 1 . 0 0 0 0 0 GPR162 27239 bcgsc.ca 37 12 6933232 6933232 + Silent SNP G G A rs141636256 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GPR162-92 NM_019858 exon2 c.G168A p.A56A CCTAGCGGGCACA . 151 59 121 2 G|1.000;A|0.000 9 9 0 0 0 CSDA 8531 hgsc.bcm.edu 37 12 10875525 10875525 + Silent SNP G G A rs1042085 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CSDA-586 NM_003651 exon1 c.C186T p.P62P GGCTGCGGGGGCC . 10 5 0 0 G|0.824;A|0.176 4 2 2 0 0 KIAA1467 57613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 13229066 13229066 + Missense_Mutation SNP C C T rs142863695 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA1467-92 NM_020853 exon11 c.C1631T p.T544M CAGTGACGGCTTC . 186 84 174 0 C|0.999;T|0.001 0 0 0 0 0 EPS8 2059 broad.mit.edu 37 12 15814975 15814975 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EPS8-94 NM_004447 exon9 c.C795T p.R265R GTCAATGCGGGCT . 118 4 83 0 . 1 1 0 0 0 TM7SF3 51768 bcgsc.ca 37 12 27152534 27152534 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TM7SF3-92 NM_016551 exon3 c.T322C p.C108R AAGTGCATGTACT . 236 7 157 1 . 4 4 0 0 0 CCNT1 904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49086936 49086936 + Silent SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CCNT1-418 NM_001240 exon9 c.T2061C p.Y687Y GTCACTATAAGGA . 226 84 149 0 . 5 4 1 0 0 ADCY6 112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49170332 49170332 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADCY6-90 NM_020983 exon7 c.C1414T p.R472C CCACGCGCATGTT . 95 37 85 0 . 11 7 4 0 0 FKBP11 51303 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 49318027 49318028 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FKBP11-226 NM_016594 exon4 c.295_296del p.99_99del AGAAGACTCTGCT . 158 69 121 0 . 0 0 0 0 0 ARF3 377 bcgsc.ca 37 12 49333524 49333524 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARF3-227 NM_001659 exon4 c.G298A p.V100I CATTTACTCGCTC . 248 7 211 0 . 133 128 5 0 0 C1QL4 338761 broad.mit.edu 37 12 49729769 49729769 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C1QL4-90 NM_001008223 exon1 c.C492T p.G164G GTCGCCGCCGCGC . 165 6 123 0 . 0 0 0 0 0 CSRNP2 81566 broad.mit.edu;bcgsc.ca 37 12 51457707 51457707 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CSRNP2-90 NM_030809 exon5 c.T1454C p.L485S TCGGGCAATAGAG . 157 7 96 0 . 47 46 1 0 0 KRT71 112802 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 52946699 52946699 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KRT71-92 NM_033448 exon1 c.C163T p.R55W GGCTCCGGACACC . 96 9 70 1 . 0 0 0 0 0 KRT76 51350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53170942 53170942 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KRT76-154 NM_015848 exon1 c.G134A p.G45D CTGAAGCCACAGG . 124 56 124 0 . 0 0 0 0 0 SOAT2 8435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 53497419 53497419 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SOAT2-91 NM_003578 exon1 c.C58T p.R20W GGGGAGCGGGAGC . 101 8 40 0 . 0 0 0 0 0 MAP3K12 7786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53876621 53876621 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAP3K12-604 NM_001193511 exon11 c.C1966T p.R656W CCCCCCGGCCCCG . 54 8 26 0 . 17 12 5 0 0 ATF7 11016 bcgsc.ca 37 12 53946410 53946410 + Silent SNP G G A rs33921258 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATF7-455 NM_001130060 exon3 c.C60T p.N20N GTCCTCGTTTGTA . 125 56 80 2 G|0.934;A|0.066 0 0 0 0 0 SMARCC2 6601 hgsc.bcm.edu;bcgsc.ca 37 12 56559113 56559113 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SMARCC2-229 NM_139067 exon27 c.3221delC p.P1074fs GGTCCAGGGGGGG . 36 16 41 0 . 0 0 0 0 0 NACA 4666 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 57113563 57113564 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NACA-254 NM_001113203 exon3 c.1750_1751del p.584_584del GGAGAAAGAGGTA . 104 42 82 0 . 0 0 0 0 0 TAC3 6866 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 57409529 57409530 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TAC3-92 NM_013251 exon2 c.52_53del p.18_18del CCAAAGCTCTGAG . 111 52 88 0 . 0 0 0 0 0 KIF5A 3798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57963112 57963112 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIF5A-517 NM_004984 exon10 c.C893T p.T298M GCCGGACGACTAT . 156 69 120 0 . 1 0 1 0 0 SLC16A7 9194 broad.mit.edu 37 12 60173233 60173233 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC16A7-91 NM_001270622 exon6 c.A1210G p.K404E GAATATAAATACA . 56 5 36 0 . 1 1 0 0 0 BEST3 144453 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 70049362 70049362 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BEST3-248 NM_032735 exon10 c.1332delC p.P444fs GGCCCTGGGGGGG . 59 17 46 0 . 0 0 0 0 0 NAV3 89795 broad.mit.edu 37 12 78400316 78400316 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NAV3-279 NM_014903 exon8 c.G998A p.R333H CCTGGCGCAGCAA . 214 6 174 1 . 0 0 0 0 0 CEP290 80184 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 88508192 88508210 + Frame_Shift_Del DEL CTTACATTAACTAGTCTTT CTTACATTAACTAGTCTTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CTTACATTAACTAGTCTTT CTTACATTAACTAGTCTTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CEP290-96 NM_025114 exon20 c.2039_2052del p.680_684del AAATAACTTACAT . 41 9 40 0 . 0 0 0 0 0 GNPTAB 79158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 102158675 102158675 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GNPTAB-92 NM_024312 exon13 c.C2020T p.R674C GGAAGCGTTTTTC . 35 16 23 0 . 3 1 2 0 0 IFT81 28981 bcgsc.ca 37 12 110630488 110630488 + Nonsense_Mutation SNP C C T rs200335504 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IFT81-91 NM_014055 exon14 c.C1534T p.R512X GAGCTACGACAGT . 201 64 156 4 . 7 7 0 0 0 ATP2A2 488 hgsc.bcm.edu;bcgsc.ca 37 12 110784062 110784064 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CTC CTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATP2A2-94 NM_001681 exon20 c.2916_2918del p.972_973del GAAAATCTCCTTG . 268 107 200 0 . 0 0 0 0 0 OAS3 4940 bcgsc.ca 37 12 113400607 113400607 + Missense_Mutation SNP G G A rs201723513 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OAS3-1 NM_006187 exon9 c.G1984A p.V662M GGGCTCGTGCAAC . 280 129 245 4 . 4 1 3 0 0 MLEC 9761 hgsc.bcm.edu;bcgsc.ca 37 12 121132922 121132923 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLEC-91 NM_014730 exon4 c.616_617del p.206_206del AAGGTCTGTGCAC . 61 49 119 1 . 0 0 0 0 0 P2RX7 5027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 121622497 121622497 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . P2RX7-268 NM_002562 exon13 c.C1680A p.S560S CGGCTCCCAGGAC . 132 41 184 0 . 4 3 1 0 0 KNTC1 9735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123089580 123089580 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KNTC1-543 NM_014708 exon50 c.G5332A p.E1778K CTCTACGAACATC . 95 50 89 0 . 4 1 3 0 0 ARL6IP4 51329 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 123466588 123466588 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARL6IP4-90 NM_018694 exon4 c.G923A p.R308H TCATCCGCAAGGT . 114 12 167 0 . 404 356 47 0 1 RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130912861 130912861 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RIMBP2-142 NM_015347 exon12 c.G2224A p.E742K GGTACTCGTCTCC . 74 68 106 0 . 5 0 5 0 0 EP400 57634 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 132504663 132504663 + Silent SNP G G A rs150248915 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EP400-520 NM_015409 exon22 c.G4347A p.P1449P TCACCCGCCCCGG . 80 62 22 0 G|0.999;A|0.001 11 0 11 0 0 ATP12A 479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 25262636 25262636 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATP12A-137 NM_001185085 exon4 c.C408T p.S136S CTCCAGCGACAAG . 37 32 62 0 . 0 0 0 0 0 PABPC3 5042 ucsc.edu 37 13 25671755 25671755 + Silent SNP G G A rs116223079 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PABPC3-72 NM_030979 exon1 c.G1419A p.T473T GTCAACGCAGCGT . 99 18 154 3 G|0.977;A|0.023 2358 1 2353 4 0 PABPC3 5042 ucsc.edu 37 13 25671786 25671786 + Missense_Mutation SNP G G A rs113301206 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PABPC3-72 NM_030979 exon1 c.G1450A p.V484M CAGACAGTGGGTC . 95 17 142 4 G|0.994;A|0.006 1207 1 1206 0 0 AMER2 219287 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 25744555 25744555 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_152704 exon1 c.C1203T p.P401P TGGCCCGGGGACA . 91 73 118 1 . 0 0 0 0 0 RASL11A 387496 broad.mit.edu;bcgsc.ca 37 13 27847563 27847563 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RASL11A-522 NM_206827 exon4 c.C661T p.Q221X AACATGCAGGACC . 181 7 245 0 . 12 12 0 0 0 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 39264775 39264775 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FREM2-100 NM_207361 exon1 c.G3294T p.L1098L CTCCCTGAATGAT . 22 6 40 0 . 0 0 0 0 0 LHFP 10186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 39952603 39952603 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LHFP-683 NM_005780 exon3 c.G446A p.R149Q GTCTGCCGGACTT . 61 46 80 0 . 12 8 4 0 0 EBPL 84650 broad.mit.edu 37 13 50235138 50235138 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EBPL-90 NM_032565 exon4 c.A587C p.Q196P TCTTTCTGATGCA . 105 3 137 0 . 84 84 0 0 0 PCDH8 5100 hgsc.bcm.edu 37 13 53420056 53420056 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDH8-153 NM_002590 exon1 c.C2516T p.A839V GGAGGCGCGTCCG . 5 5 0 0 . 0 0 0 0 0 SCEL 8796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 78211275 78211275 + Missense_Mutation SNP A A T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SCEL-95 NM_144777 exon30 c.A1784T p.Y595F ATGGATATCAGGA . 42 7 39 0 . 0 0 0 0 0 ABCC4 10257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95830011 95830011 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCC4-515 NM_005845 exon13 c.C1677T p.D559D AGGATCGTCCAGG . 127 35 172 0 . 0 0 0 0 0 PCCA 5095 broad.mit.edu;bcgsc.ca 37 13 100925452 100925452 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCCA-227 NM_001178004 exon12 c.917delT p.I306fs GTAGCATTTTTTT . 56 9 66 0 . 0 0 0 0 0 COL4A1 1282 hgsc.bcm.edu;broad.mit.edu 37 13 110804812 110804812 + Silent SNP C C T rs146638269 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL4A1-654 NM_001845 exon51 c.G4797A p.A1599A GGGGGACGCCAGG . 89 4 142 0 C|1.000;T|0.000 60 60 0 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 51 5 30 0 . 13 13 0 0 0 OR4Q3 441669 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 20216029 20216029 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR4Q3-71 NM_172194 exon1 c.C443T p.A148V TTCTTGCCTGCTG . 342 26 508 0 . 0 0 0 0 0 OR4K2 390431 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20345046 20345046 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR4K2-72 NM_001005501 exon1 c.C620T p.A207V TAATTGCGTTGTC . 206 57 254 0 . 0 0 0 0 0 CMA1 1215 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24976583 24976583 + Missense_Mutation SNP G G A rs13306251 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CMA1-90 NM_001836 exon2 c.C188T p.T63M GCAGCCGTCAGCA . 101 75 109 1 G|0.163;T|0.000 0 0 0 0 0 MIS18BP1 55320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 45675328 45675328 + Missense_Mutation SNP T T A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MIS18BP1-90 NM_018353 exon15 c.A3198T p.K1066N ATTACTTTTATGA . 182 145 242 1 . 17 1 16 0 0 DNAAF2 55172 hgsc.bcm.edu 37 14 50100683 50100683 + Silent SNP C C G rs2985686 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_018139 exon1 c.G1185C p.A395A GTCCTCCGCGCGA . 9 9 0 0 C|0.569;G|0.431 2 0 2 0 0 ELMSAN1 91748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 74193665 74193665 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_194278 exon6 c.G2173A p.V725M AGCCCACGTTGAT . 137 40 283 0 . 3 2 1 0 0 VSX2 338917 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 74711911 74711911 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . VSX2-69 NM_182894 exon3 c.T499G p.F167V AAGGCATTCAACG . 112 9 142 0 . 0 0 0 0 0 TDP1 55775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 90450919 90450919 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TDP1-92 NM_018319 exon9 c.C944T p.S315L GAGAGTCGCCAAC . 37 30 52 0 . 1 0 1 0 0 DYNC1H1 1778 bcgsc.ca 37 14 102508056 102508056 + Missense_Mutation SNP C C A rs10129889 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DYNC1H1-98 NM_001376 exon65 c.C12087A p.H4029Q GACCCACATTGTG . 84 5 143 1 C|0.882;A|0.118 85 85 0 0 0 TDRD9 122402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 104481118 104481118 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TDRD9-70 NM_153046 exon21 c.T2163C p.V721V GCATGTTGATTCT . 48 39 57 0 . 0 0 0 0 0 KIF26A 26153 hgsc.bcm.edu 37 14 104644099 104644099 + Silent SNP T T C rs2497297 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIF26A-24 NM_015656 exon12 c.T4974C p.S1658S CAGCAGTGGCTAT . 5 5 0 0 T|0.603;C|0.397 10 0 10 0 0 AHNAK2 113146 ucsc.edu;bcgsc.ca 37 14 105409902 105409902 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AHNAK2-47 NM_138420 exon7 c.G11886A p.T3962T TTTGGCCGTCATG . 164 123 355 3 . 0 0 0 0 0 OR4M2 390538 bcgsc.ca 37 15 22369046 22369046 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR4M2-69 NM_001004719 exon1 c.C471T p.I157I TTCTATCATACAG . 733 29 1141 2 . 0 0 0 0 0 MAGEL2 54551 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 23890894 23890894 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_019066 exon1 c.1996delC p.Q666fs CCTGCTGGGGGGG . 31 29 5 0 . 0 0 0 0 0 MTMR10 54893 broad.mit.edu 37 15 31269078 31269078 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MTMR10-91 NM_017762 exon3 c.C202T p.L68L ATATCAGCTTTCC . 102 3 129 0 . 0 0 0 0 0 FMN1 342184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 33358991 33358991 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FMN1-23 NM_001103184 exon1 c.G1095A p.S365S CCTGGGCGACTCA . 72 10 124 0 . 0 0 0 0 0 JMJD7-PLA2G4B 8681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42137956 42137956 + Missense_Mutation SNP G G A rs150220260 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . JMJD7-PLA2G4B-135 NM_005090 exon20 c.G2171A p.R724H AGTCCCGCATCTG . 35 26 65 0 G|1.000;A|0.000 17 1 16 0 0 SCG3 29106 broad.mit.edu 37 15 52011690 52011690 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SCG3-91 NM_013243 exon12 c.C1374T p.A458A AGAAGCCGAGGCC . 74 3 75 0 . 0 0 0 0 0 LACTB 114294 hgsc.bcm.edu 37 15 63414083 63414083 + Missense_Mutation SNP A A C rs34317102 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LACTB-90 NM_171846 exon1 c.A13C p.M5L CGGCTCATGTCAG . 4 4 0 0 A|0.226;C|0.774 0 0 0 0 0 DENND4A 10260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65995235 65995235 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DENND4A-229 NM_001144823 exon16 c.G2199A p.L733L CATGGGCAAAGGG . 34 31 67 0 . 4 0 4 0 0 CLK3 1198 bcgsc.ca 37 15 74921337 74921337 + Silent SNP C C T rs192164311 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CLK3-358 NM_001130028 exon12 c.C1704T p.D568D CTCTGACGGCCGG . 121 5 127 1 C|0.999;T|0.000 77 76 1 0 0 FBXO22 26263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 76225297 76225297 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FBXO22-658 NM_147188 exon7 c.G1066A p.G356S TTATTCGGCTTCT . 98 23 98 0 . 27 24 3 0 0 C15orf40 123207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 83679055 83679055 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C15orf40-91 NM_001160116 exon2 c.G172A p.D58N TAGGATCAACTGC . 183 153 262 0 . 4 0 4 0 0 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 85360157 85360157 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ALPK3-337 NM_020778 exon1 c.C80T p.P27L TGGTGCCAGGAAG . 220 21 212 0 . 0 0 0 0 0 POLG 5428 broad.mit.edu 37 15 89876828 89876830 + In_Frame_Del DEL TGC TGC - rs41550117 bycluster;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . POLG-228 NM_002693 exon2 c.156_158del p.52_53del TGCTGTTGCTGCT . 20 13 8 0 . 0 0 0 0 0 HDDC3 374659 bcgsc.ca 37 15 91475059 91475060 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AG - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HDDC3-91 NM_198527 exon3 c.283_284del p.95_95del TTGGGCAGAGTCT . 33 7 60 0 . 0 0 0 0 0 ARRDC4 91947 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 98513945 98513945 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARRDC4-90 NM_183376 exon7 c.G1172A p.R391Q AATTCCGGTTTCA . 41 4 91 0 . 0 0 0 0 0 ADAMTS17 170691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 100594247 100594247 + Missense_Mutation SNP G G A rs143817747 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADAMTS17-228 NM_139057 exon16 c.C2150T p.S717L TTACCCGAGTCTT . 57 43 65 0 G|0.999;A|0.001 0 0 0 0 0 OR4F15 390649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 102358851 102358851 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR4F15-68 NM_001001674 exon1 c.C462T p.I154I CCTTATCCACTCA . 187 53 247 0 . 0 0 0 0 0 ITFG3 83986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 314146 314146 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITFG3-90 NM_032039 exon11 c.C1320T p.H440H CCTCCACGAGCTG . 28 23 36 0 . 19 1 18 0 0 JMJD8 339123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 732820 732820 + Missense_Mutation SNP C C T rs113649865 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . JMJD8-67 NM_001005920 exon9 c.G832A p.V278I TGAAGACGCTGGT . 144 122 238 2 C|0.999;T|0.001 60 2 58 0 0 UBE2I 7329 bcgsc.ca 37 16 1364365 1364365 + Silent SNP A A G rs4610 bycluster;byfrequency;by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UBE2I-290 NM_003345 exon3 c.A138G p.P46P CATTCCAGGAAAG . 133 6 175 1 A|0.870;G|0.130 1 1 0 0 0 RNF151 146310 hgsc.bcm.edu 37 16 2018635 2018635 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RNF151-22 NM_174903 exon4 c.C447A p.T149T GGCCACCCTGGAC . 25 23 4 0 . 0 0 0 0 0 PRSS41 360226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2854956 2854956 + Silent SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001135086 exon5 c.G780C p.L260L TGGACTGTGGTAT . 229 174 445 0 . 0 0 0 0 0 PKMYT1 9088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3024609 3024609 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PKMYT1-765 NM_182687 exon5 c.C921T p.H307H CCCACCGTGGGGC . 162 122 277 1 . 23 2 21 0 0 ZNF263 10127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3340332 3340332 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF263-94 NM_005741 exon6 c.G1826T p.G609V TTTGTGGGGAAAA . 60 13 95 0 . 7 4 3 0 0 TVP23A 780776 hgsc.bcm.edu 37 16 10867203 10867203 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001079512 exon5 c.420delT p.F140fs GGTGCTAAAAAAA . 68 50 114 1 . 0 0 0 0 0 ERCC4 2072 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 14041727 14041727 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ERCC4-665 NM_005236 exon11 c.G2274A p.L758L GCTTCTGATTGAG . 79 8 76 0 . 0 0 0 0 0 RRN3 54700 broad.mit.edu 37 16 15168670 15168670 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RRN3-91 NM_018427 exon11 c.C907A p.L303I GGTCGAGCCGTTC . 59 6 87 1 . 8 8 0 0 0 ABCC1 4363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 16184382 16184382 + Missense_Mutation SNP G G A rs45517537 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCC1-94 NM_004996 exon19 c.G2581A p.A861T GACGGCGCCTTCG . 64 54 130 0 G|1.000;A|0.000 11 2 9 0 0 COG7 91949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 23415033 23415033 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COG7-90 NM_153603 exon13 c.G1785A p.L595L AATAAGCAACAGC . 139 14 191 0 . 15 13 2 0 0 TAOK2 9344 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 29997670 29997670 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TAOK2-521 NM_004783 exon16 c.C2077T p.R693W GAGCTGCGGCAGC . 88 6 30 0 . 44 42 2 0 0 PRR14 78994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30664048 30664048 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRR14-90 NM_024031 exon4 c.G199A p.V67M GTCCCCGTGGTGC . 175 47 242 0 . 0 0 0 0 0 RNF40 9810 broad.mit.edu;bcgsc.ca 37 16 30780607 30780607 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RNF40-226 NM_014771 exon16 c.A2348G p.D783G AAAAGGATGATGC . 216 8 334 0 . 28 27 1 0 0 ZNF646 9726 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31091261 31091261 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF646-153 NM_014699 exon2 c.G3616A p.E1206K AGCTGCGAGGTGT . 152 26 218 1 . 6 5 1 0 0 ARMC5 79798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31473937 31473937 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARMC5-24 NM_024742 exon3 c.C1069T p.R357C CTATGTCGTGAGG . 39 34 67 0 . 7 0 7 0 0 PHKB 5257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 47697593 47697593 + Missense_Mutation SNP G G A rs56010117 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PHKB-154 NM_000293 exon24 c.G2284A p.V762I GGTACCGTTTCTG . 50 33 68 0 G|0.999;A|0.001 0 0 0 0 0 NKD1 85407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50667165 50667165 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NKD1-226 NM_033119 exon10 c.C886T p.R296C CGATCTCGCTCCC . 221 181 312 1 . 30 0 30 0 0 DOK4 55715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 57507532 57507532 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DOK4-227 NM_018110 exon8 c.C855T p.S285S AGCATAGCTGGAG . 156 35 224 0 . 3 3 0 0 0 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 61761065 61761065 + Missense_Mutation SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH8-161 NM_001796 exon9 c.A1469G p.N490S TTGTCATTGACAT . 131 105 161 1 . 0 0 0 0 0 LRRC36 55282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67380244 67380244 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRC36-90 NM_018296 exon3 c.C284T p.P95L TACAACCGTTACC . 72 59 110 0 . 0 0 0 0 0 C16orf86 388284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67701268 67701268 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001012984 exon2 c.C172T p.R58C GACCAGCGCCCAG . 156 135 193 1 . 1 0 1 0 0 TSNAXIP1 55815 broad.mit.edu 37 16 67859858 67859858 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TSNAXIP1-90 NM_018430 exon9 c.G861T p.K287N TCGCAAGGAGCAT . 75 3 126 0 . 0 0 0 0 0 VPS4A 27183 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 69352767 69352767 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_013245 exon5 c.G385A p.V129M AACGACGTGGCCG . 48 38 64 0 . 30 0 30 0 0 MLYCD 23417 hgsc.bcm.edu 37 16 83933193 83933193 + Silent SNP C C T rs62640904 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLYCD-90 NM_012213 exon1 c.C444T p.D148D GCTGGACGGCGGC . 14 8 0 0 C|0.970;T|0.030 2 0 2 0 0 MBTPS1 8720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 84092913 84092913 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MBTPS1-92 NM_003791 exon21 c.C2825T p.A942V CTGGGCGCCGTCT . 105 15 155 0 . 1 1 0 0 0 IL17C 27189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 88706470 88706470 + Missense_Mutation SNP G G A rs189692693 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IL17C-90 NM_013278 exon3 c.G584A p.R195H TGCCCCGTTCAGT . 92 10 115 0 G|0.999;A|0.000 0 0 0 0 0 CDT1 81620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 88873021 88873021 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDT1-227 NM_030928 exon7 c.C1061T p.T354M CCGCCACGGAGAA . 218 59 99 0 . 18 12 6 0 0 CPNE7 27132 broad.mit.edu;bcgsc.ca 37 16 89661966 89661966 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CPNE7-90 NM_014427 exon16 c.G1719A p.A573A GCCCGCGCTCCGG . 174 7 71 0 . 21 18 2 1 0 DEF8 54849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 90021667 90021667 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DEF8-68 NM_207514 exon4 c.G398A p.R133H TCTCCCGCCCTGT . 120 13 189 0 . 0 0 0 0 0 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3954155 3954155 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZZEF1-93 NM_015113 exon36 c.C5783T p.T1928M CTGCGCGTCTGGG . 94 72 110 0 . 4 0 4 0 0 ANKFY1 51479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4071191 4071191 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ANKFY1-93 NM_001257999 exon25 c.G3518A p.R1173H AGAAGACGTCCGC . 49 5 70 0 . 8 7 1 0 0 SPNS3 201305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4348462 4348462 + Missense_Mutation SNP G G C rs141797761 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SPNS3-153 NM_182538 exon3 c.G401C p.R134P CCCCCCGGGTACG . 93 83 176 1 G|1.000;A|0.000 0 0 0 0 0 NLRP1 22861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 5436698 5436698 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NLRP1-274 NM_014922 exon10 c.C3059T p.A1020V GAAGCCGCCCTCT . 28 25 33 0 . 0 0 0 0 0 KIAA0753 9851 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 6502594 6502594 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA0753-90 NM_014804 exon14 c.C2135T p.S712L ACTGACGAGCCAT . 90 6 111 0 . 6 6 0 0 0 DVL2 1856 broad.mit.edu 37 17 7132483 7132483 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DVL2-659 NM_004422 exon8 c.C928T p.R310C CAATGCGCCCGTC . 88 4 141 0 . 7 7 0 0 0 NEURL4 84461 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7224496 7224496 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NEURL4-46 NM_032442 exon20 c.T3295C p.S1099P TGGGGGAAGGAGG . 113 20 229 0 . 10 6 4 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578212 7578212 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TP53-70225 NM_000546 exon6 c.C637T p.R213X TATGTCGAAAAGT . 132 112 188 0 . 1 0 1 0 0 KDM6B 23135 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7752034 7752034 + Missense_Mutation SNP G G A rs148573983 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KDM6B-205 NM_001080424 exon11 c.G2428A p.V810M GCCTCCGTGCTGG . 61 48 105 0 G|1.000;A|0.000 3 0 3 0 0 MPRIP 23164 hgsc.bcm.edu;bcgsc.ca 37 17 17046886 17046886 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MPRIP-90 NM_015134 exon9 c.1052delC p.A351fs ATGAAGCCCCCCC . 78 68 97 1 . 0 0 0 0 0 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 18054476 18054476 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYO15A-97 NM_016239 exon38 c.C7526T p.A2509V CCCCTGCCAAACC . 72 57 92 0 . 0 0 0 0 0 FLII 2314 broad.mit.edu 37 17 18152474 18152474 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FLII-91 NM_002018 exon16 c.C1901A p.P634H GGCACAGGCTCCA . 67 3 122 0 . 37 37 0 0 0 SLC13A2 9058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 26800779 26800779 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC13A2-90 NM_001145975 exon1 c.G49A p.V17M CTGATCGTGTTCT . 92 17 161 0 . 0 0 0 0 0 SPAG5 10615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 26919548 26919548 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SPAG5-90 NM_006461 exon3 c.C714T p.N238N GAAGGCGTTACTT . 71 58 119 0 . 6 0 6 0 0 EFCAB5 374786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28405430 28405430 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EFCAB5-70 NM_198529 exon15 c.C2935T p.R979W GCCAGGCGGAAAT . 171 147 192 0 . 0 0 0 0 0 ATAD5 79915 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29204542 29204542 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATAD5-93 NM_024857 exon16 c.C3893T p.A1298V AAAATGCAACATC . 89 71 170 2 . 0 0 0 0 0 RFFL 117584 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33338994 33338994 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RFFL-90 NM_001017368 exon7 c.G1085A p.R362Q CAGGACCGGAAGA . 129 25 152 1 . 4 2 2 0 0 ACACA 31 bcgsc.ca 37 17 35581989 35581989 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ACACA-154 NM_198834 exon27 c.G3398A p.R1133H TTATGGCGAAGCT . 218 6 283 2 . 0 0 0 0 0 ARHGAP23 57636 hgsc.bcm.edu 37 17 36666551 36666551 + Silent SNP T T C rs62074752 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARHGAP23-205 NM_001199417 exon24 c.T3819C p.D1273D GGGGGATGAGGCG . 7 7 0 0 C|0.823;G|0.000;T|0.177 1 0 1 0 0 GSDMA 284110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38130530 38130530 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GSDMA-90 NM_178171 exon9 c.C756T p.D252D AGGGGACGTACAC . 76 61 114 0 . 0 0 0 0 0 TNS4 84951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38633890 38633890 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNS4-155 NM_032865 exon13 c.C2098A p.Q700K TGACCTGCGAGGC . 95 79 156 0 . 0 0 0 0 0 KRT33B 3884 broad.mit.edu 37 17 39521763 39521763 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KRT33B-90 NM_002279 exon4 c.G631A p.V211M CCTCCACGTTGAG . 124 5 224 0 . 0 0 0 0 0 MLX 6945 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 40720854 40720856 + Frame_Shift_Del DEL GAT GAT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 GAT GAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLX-90 NM_170607 exon4 c.332_333del p.111_111del AGCGTAGATGATG . 165 131 304 0 . 0 0 0 0 0 WNT3 7473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 44846089 44846089 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . WNT3-522 NM_030753 exon4 c.A665A p.Q222Q TGCGCCCACCAGC . 137 99 201 1 . 11 0 11 0 0 BZRAP1 9256 broad.mit.edu 37 17 56388998 56388998 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BZRAP1-229 NM_004758 exon18 c.C3015A p.I1005I AGCATCGATGGTG . 154 5 194 0 . 2 1 1 0 0 CLTC 1213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 57754463 57754463 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CLTC-835 NM_004859 exon17 c.G2710A p.V904I AGTCGCGTTGTTG . 110 89 142 1 . 19 1 18 0 0 KCNH6 81033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 61621675 61621675 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCNH6-91 NM_030779 exon12 c.2407delC p.P803fs GAAATGCCCCCAA . 65 49 120 0 . 0 0 0 0 0 DDX42 11325 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 61895428 61895428 + Silent SNP C C T rs145932119 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DDX42-230 NM_203499 exon18 c.C2487T p.S829S GCATAGCGATAGT . 80 9 85 0 C|1.000;T|0.000 44 43 1 0 0 TEX2 55852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 62271012 62271012 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TEX2-91 NM_018469 exon4 c.C2083T p.R695X TTTCTCGGCCAGT . 115 96 168 1 . 0 0 0 0 0 ARSG 22901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 66391298 66391298 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARSG-91 NM_001267727 exon10 c.C1176T p.S392S CGTCTCCGAGGTG . 104 83 168 0 . 2 1 1 0 0 ABCA9 10350 bcgsc.ca 37 17 67028260 67028260 + Silent SNP T T C rs2302291 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCA9-95 NM_080283 exon10 c.A1434G p.K478K GGCTTCTTTCCCA . 84 6 123 1 T|0.542;C|0.458 0 0 0 0 0 ABCA6 23460 hgsc.bcm.edu;bcgsc.ca 37 17 67125767 67125767 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCA6-159 NM_080284 exon7 c.917delT p.L306fs CCATATAAAAAAA . 180 144 202 1 . 0 0 0 0 0 CPSF4L 642843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 71257098 71257098 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CPSF4L-68 NM_001129885 exon2 c.T128C p.F43S GTGAAGAAGTTGC . 41 35 104 0 . 0 0 0 0 0 GRIN2C 2905 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 72838754 72838754 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRIN2C-228 NM_000835 exon13 c.C3522T p.H1174H GGAGCCGTGGCTG . 90 22 82 0 . 11 7 4 0 0 TRIM65 201292 broad.mit.edu 37 17 73888574 73888574 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIM65-90 NM_001256124 exon3 c.C518A p.A173D ATGCAGGCCGAGT . 55 5 133 0 . 3 3 0 0 0 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76424720 76424720 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DNAH17-142 NM_173628 exon77 c.C12474T p.N4158N CTCTGCGTTGGGG . 122 34 226 0 . 1 1 0 0 0 SGSH 6448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 78188920 78188920 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SGSH-91 NM_000199 exon3 c.C267T p.Y89Y CAGCCCGTACATC . 52 48 58 0 . 9 1 8 0 0 BAHCC1 57597 bcgsc.ca 37 17 79424537 79424537 + Silent SNP C C T rs34224936 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BAHCC1-23 . . . . GCCGTGCTGGGGC . 61 5 122 1 C|0.696;T|0.304 0 0 0 0 0 BAHCC1 57597 broad.mit.edu;bcgsc.ca 37 17 79424588 79424590 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BAHCC1-23 . . . . AAGGCCAAGAAGA . 55 8 101 0 . 0 0 0 0 0 LAMA1 284217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 6997824 6997824 + Missense_Mutation SNP C C T rs150510890 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LAMA1-149 NM_005559 exon33 c.G4723A p.V1575I AAAGAACGGCATC . 110 34 117 0 C|1.000;T|0.000 0 0 0 0 0 PIEZO2 63895 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 10672692 10672692 + Silent SNP G G A rs146400447 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_022068 exon51 c.C8001T p.G2667G CCCATAGCCAGCC . 53 16 78 1 G|0.998;A|0.002 0 0 0 0 0 CDH2 1000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 25582999 25582999 + Missense_Mutation SNP C C A rs202045628 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH2-525 NM_001792 exon7 c.G982T p.G328C TGTCACCAGTCTC . 173 145 271 1 . 5 0 5 0 0 CCDC178 374864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 30672841 30672841 + Missense_Mutation SNP G G A rs148945908 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001105528 exon20 c.C2272T p.R758C CTAAACGCAGATT . 43 33 89 0 G|1.000;A|0.000 0 0 0 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 31250678 31250678 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASXL3-49 NM_030632 exon6 c.G519A p.M173I CTCAATGATGGTA . 87 74 141 1 . 0 0 0 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 31324011 31324011 + Missense_Mutation SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASXL3-49 NM_030632 exon12 c.C4199G p.S1400C GTGATTCTGTAGC . 137 8 150 0 . 0 0 0 0 0 SLC14A1 6563 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 43319234 43319234 + Missense_Mutation SNP G G A rs201451018 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC14A1-515 NM_001146037 exon6 c.G938A p.C313Y TCATGTGCCTGCA . 88 8 145 0 G|0.999;T|0.001 0 0 0 0 0 LOXHD1 125336 broad.mit.edu;bcgsc.ca 37 18 44159642 44159642 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_144612 exon13 c.G1760A p.R587Q AGCAGCCGTTCCC . 256 10 393 2 . 0 0 0 0 0 LOXHD1 125336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 44181267 44181267 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_144612 exon8 c.C1047T p.I349I CAGCTCGATGTGG . 91 51 117 0 . 0 0 0 0 0 CXXC1 30827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 47809921 47809921 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CXXC1-131 NM_001101654 exon12 c.C1550T p.T517M AAGGACGTCTGGC . 144 109 267 1 . 20 2 18 0 0 NEDD4L 23327 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 56063446 56063446 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NEDD4L-658 NM_001144967 exon31 c.G2873A p.R958Q ATTTACGAGAGAA . 45 32 74 1 . 12 1 11 0 0 TNFRSF11A 8792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 60017106 60017106 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNFRSF11A-659 NM_001270951 exon3 c.G219A p.P73P TGGCCCGGATGAA . 68 59 105 0 . 0 0 0 0 0 SERPINB2 5055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 61564454 61564454 + Splice_Site SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SERPINB2-226 NM_002575 exon4 c.417+1G>A . CGGGAAGTAAGTG . 35 24 43 0 . 0 0 0 0 0 ZNF407 55628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 72347651 72347651 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF407-92 NM_001146190 exon1 c.G4676A p.R1559H ACATTCGCACTCA . 201 171 110 0 . 0 0 0 0 0 ARID3A 1820 hgsc.bcm.edu 37 19 929753 929753 + Silent SNP A A G rs1799595 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARID3A-90 NM_005224 exon2 c.A225G p.P75P ACACCCAGCCAGC . 8 7 0 0 A|0.114;G|0.886 1 0 1 0 0 ATP8B3 148229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1796766 1796766 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_138813 exon16 c.G1697A p.R566H AGCAGGCGCCAGA . 114 101 46 0 . 0 0 0 0 0 NCLN 56926 broad.mit.edu 37 19 3198895 3198895 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NCLN-90 NM_020170 exon5 c.C696T p.P232P GGCCCCCGTACGT . 92 4 120 0 . 1 1 0 0 0 TBXA2R 6915 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 3595765 3595765 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TBXA2R-90 NM_201636 exon3 c.G953A p.R318H TGGAGACGCCGGA . 182 66 76 0 . 8 6 2 0 0 PLIN3 10226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 4839518 4839518 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLIN3-90 NM_005817 exon8 c.C991T p.R331W TGTCCCGGAACAT . 89 69 132 1 . 84 3 81 0 0 PTPRS 5802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 5244045 5244045 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PTPRS-357 NM_002850 exon11 c.C1437T p.N479N GTCCACGTTGTGC . 61 47 46 0 . 1 0 1 0 0 ARHGEF18 23370 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 7529570 7529576 + Frame_Shift_Del DEL GCAGGTG GCAGGTG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 GCAGGTG GCAGGTG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARHGEF18-228 NM_001130955 exon13 c.2334_2340del p.778_780del ATCGCCGCAGGTG . 194 29 142 0 . 0 0 0 0 0 FBN3 84467 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8203066 8203066 + Missense_Mutation SNP G G A rs141919495 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FBN3-100 NM_032447 exon9 c.C1160T p.A387V CCACGCGCATCAG . 162 93 90 1 G|1.000;A|0.000 0 0 0 0 0 KANK3 256949 hgsc.bcm.edu 37 19 8399709 8399709 + Silent SNP C C A rs890852 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KANK3-90 NM_198471 exon3 c.G1002T p.V334V CGCCTCCACGGTC . 5 4 0 0 T|0.129;G|0.871 1 0 1 0 0 RAB11B 9230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8464942 8464942 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RAB11B-227 NM_004218 exon2 c.C236T p.A79V CCTCCGCGTGCGT . 574 210 92 0 . 0 0 0 0 0 PIN1 5300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9959811 9959811 + Missense_Mutation SNP C C T rs112773610 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PIN1-227 NM_006221 exon4 c.C428T p.T143M TGCGGACGGGGGA . 128 76 54 0 C|0.500;T|0.500 165 61 104 0 0 COL5A3 50509 broad.mit.edu 37 19 10088375 10088375 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL5A3-99 NM_015719 exon42 c.C3021A p.G1007G AGGGGAGCCCTGA . 136 12 63 1 . 0 0 0 0 0 TYK2 7297 hgsc.bcm.edu;bcgsc.ca 37 19 10479028 10479028 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TYK2-1009 NM_003331 exon4 c.260delC p.P87fs TGGTTTGGGGGCA . 509 156 285 2 . 0 0 0 0 0 ILF3 3609 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10798173 10798173 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ILF3-93 NM_017620 exon18 c.C2223T p.H741H GCCGCACGGGGGC . 279 166 166 0 . 134 53 80 0 1 LDLR 3949 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 11218155 11218155 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LDLR-94 NM_001195798 exon6 c.G905T p.C302F GAGACTGCCGGGA . 351 22 253 0 . 78 75 3 0 0 ZNF563 147837 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 12429665 12429665 + Missense_Mutation SNP G G A rs201356487 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF563-90 NM_145276 exon4 c.C1174T p.P392S TATGAGGTCCACC . 287 15 148 0 G|1.000;T|0.000 13 11 2 0 0 ASNA1 439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12858083 12858083 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASNA1-92 NM_004317 exon5 c.G682A p.V228I CTGCCCGTCATCC . 201 53 119 0 . 252 180 72 0 0 HOOK2 29911 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 12881872 12881872 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HOOK2-92 NM_001100176 exon10 c.G776T p.R259M TCCTCCCTGCCAC . 215 21 118 0 . 10 6 4 0 0 MAST1 22983 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12980051 12980051 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAST1-523 NM_014975 exon22 c.G2945A p.R982H CACTGCGTGCCAT . 283 99 162 1 . 0 0 0 0 0 KLF1 10661 broad.mit.edu 37 19 12995769 12995769 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KLF1-90 NM_006563 exon3 c.G1019A p.R340H TGGCAGCGGAAGG . 265 5 119 0 . 0 0 0 0 0 FARSA 2193 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13035057 13035057 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FARSA-91 NM_004461 exon12 c.C1296T p.V432V GTTTCCGACCTCC . 188 65 105 1 . 161 110 51 0 0 MIR639 693224 bcgsc.ca;mdanderson.org 37 19 14640387 14640387 + RNA SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . . . . . AGGGGCGGGGCGG . 168 63 29 0 . 2 1 1 0 0 CCDC105 126402 hgsc.bcm.edu 37 19 15133926 15133926 + Missense_Mutation SNP C C A rs8112667 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CCDC105-91 NM_173482 exon7 c.C1495A p.P499T GCGGACCCCTAGT . 10 8 1 0 C|0.671;A|0.329 0 0 0 0 0 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 15292567 15292567 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NOTCH3-855 NM_000435 exon17 c.T2612C p.F871S CAGGAAAAGGAGC . 422 31 83 0 . 1 1 0 0 0 BRD4 23476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15355539 15355539 + Silent SNP G G A rs201923211 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BRD4-767 NM_058243 exon12 c.C2193T p.P731P CCTCCCGGGGTGC . 213 72 123 0 . 23 14 9 0 0 CYP4F8 11283 broad.mit.edu;bcgsc.ca 37 19 15740063 15740063 + RNA SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CYP4F8-90 . . . . CACGCTGCTGCGC . 361 12 216 0 . 1 1 0 0 0 CHERP 10523 broad.mit.edu 37 19 16640581 16640583 + In_Frame_Del DEL TGC TGC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CHERP-92 NM_006387 exon8 c.1005_1007del p.335_336del TGCTGTTGCTGCT . 227 7 125 0 . 0 0 0 0 0 MAP1S 55201 hgsc.bcm.edu 37 19 17837425 17837425 + Missense_Mutation SNP C C G rs17710707 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAP1S-90 NM_018174 exon5 c.C1232G p.S411C TGGCCTCTGTGTG . 12 7 3 0 C|0.883;G|0.117 9 4 5 0 0 JAK3 3718 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 17945987 17945987 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . JAK3-2418 NM_000215 exon15 c.G1952A p.R651Q ACCTTCCGGGCAG . 145 13 85 0 . 6 6 0 0 0 CRTC1 23373 broad.mit.edu 37 19 18887993 18887993 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CRTC1-1361 NM_001098482 exon15 c.1754delC p.S585fs GAGAGTCCCCCCC . 15 5 20 0 . 0 0 0 0 0 ATP13A1 57130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 19770410 19770410 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATP13A1-138 NM_020410 exon3 c.A677C p.K226T ACTCACTTGTTGC . 192 23 94 0 . 0 0 0 0 0 PLEKHF1 79156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 30165469 30165469 + Silent SNP G G A rs143273878 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLEKHF1-226 NM_024310 exon2 c.G723A p.A241A CGGAGCGTCCAGT . 89 25 35 0 G|0.999;T|0.001 8 4 4 0 0 TSHZ3 57616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 31769263 31769263 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TSHZ3-232 NM_020856 exon2 c.C1436T p.A479V GTGACCGCTTTCT . 155 25 107 0 . 3 3 0 0 0 DMKN 93099 ucsc.edu;bcgsc.ca 37 19 35991471 35991471 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DMKN-155 NM_033317 exon12 c.G1251A p.A417A TGATGACGCGTCC . 174 68 126 2 . 0 0 0 0 0 MLL4 8085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 36218685 36218686 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLL4-697 NM_014727 exon17 c.4389_4390del p.1463_1464del CAAGTCTGTGGTG . 264 39 259 0 . 0 0 0 0 0 MLL4 8085 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36229230 36229230 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLL4-697 NM_014727 exon37 c.C7920T p.D2640D AGTGGACGCCACG . 229 84 161 2 . 116 60 56 0 0 KIRREL2 84063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 36357214 36357214 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIRREL2-93 NM_199180 exon15 c.1947delC p.V649fs CATGGTCCCCCCC . 32 18 31 0 . 0 0 0 0 0 ZNF793 390927 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38028650 38028650 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF793-68 NM_001013659 exon8 c.G1090C p.E364Q ACAGGAGAGAAGC . 95 9 66 0 . 1 1 0 0 0 SPINT2 10653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38780794 38780794 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SPINT2-90 NM_021102 exon5 c.C427T p.R143C CCTTGCCGTGCAT . 172 99 198 0 . 32 22 10 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39018344 39018344 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RYR1-100 NM_000540 exon73 c.C10744T p.R3582C CCGGGTCGCGAGG . 244 119 237 1 . 0 0 0 0 0 PLEKHG2 64857 hgsc.bcm.edu;bcgsc.ca 37 19 39905656 39905656 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLEKHG2-274 NM_022835 exon3 c.134delC p.S45fs TGGCCTCCCCCCG . 176 76 195 0 . 0 0 0 0 0 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 40368454 40368454 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FCGBP-98 NM_003890 exon28 c.G12894A p.V4298V AGGTGGCACATGA . 399 56 360 0 . 0 0 0 0 0 PSMC4 5704 bcgsc.ca 37 19 40486359 40486359 + Missense_Mutation SNP A A T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PSMC4-91 NM_006503 exon9 c.A1085T p.D362V TGGAAGACTGTAT . 90 39 72 2 . 4 3 1 0 0 LTBP4 8425 broad.mit.edu 37 19 41119074 41119074 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LTBP4-93 . . . . CCGGGCGCCGTCG . 60 11 9 0 . 7 6 0 0 1 LTBP4 8425 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41132999 41132999 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LTBP4-93 . . . . GGCCTCCCATATG . 105 43 95 0 . 60 31 29 0 0 ADCK4 79934 broad.mit.edu 37 19 41211038 41211038 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADCK4-319 NM_024876 exon7 c.G539A p.R180H CTCTGGCGGACCC . 171 6 189 0 . 17 17 0 0 0 ITPKC 80271 broad.mit.edu;bcgsc.ca 37 19 41245300 41245300 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITPKC-115 NM_025194 exon7 c.C1887T p.T629T CCACACCGGCCTG . 326 9 274 0 . 5 5 0 0 0 GRIK5 2901 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42525580 42525580 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRIK5-90 NM_002088 exon14 c.C1744T p.R582C GGGGGCGTGCCCG . 74 6 61 0 . 16 15 1 0 0 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 42914843 42914843 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LIPE-154 NM_005357 exon2 c.G1035A p.A345A CCCCAGCGCCTGC . 171 39 37 0 . 6 5 1 0 0 PSG6 5675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43411758 43411758 + Missense_Mutation SNP G G A rs200244036 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PSG6-92 NM_001031850 exon4 c.C955T p.R319C TACTGCGGATGCC . 156 65 137 0 . 0 0 0 0 0 PVR 5817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45157249 45157249 + Missense_Mutation SNP C C T rs3745145 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PVR-90 NM_001135769 exon4 c.C805T p.R269C GATGCTCGCAGCA . 87 50 71 0 C|0.161;G|0.839 48 23 25 0 0 ERCC2 2068 hgsc.bcm.edu 37 19 45867259 45867259 + Missense_Mutation SNP C C T rs1799793 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ERCC2-848 NM_000400 exon10 c.G934A p.D312N CTTCGTCGGGCAG . 14 7 0 0 C|0.804;T|0.196 10 6 4 0 0 GPR4 2828 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46094248 46094248 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GPR4-92 NM_005282 exon2 c.G877A p.A293T TGCGGGCGCCCTC . 163 79 127 1 . 58 43 15 0 0 DMWD 1762 hgsc.bcm.edu 37 19 46289542 46289544 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CTC CTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DMWD-90 NM_004943 exon3 c.1210_1212del p.404_404del CTCGGGCTCCTCC . 197 80 41 1 . 0 0 0 0 0 STRN4 29888 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 47236402 47236402 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . STRN4-90 NM_001039877 exon5 c.G631A p.G211R CTGCCCCGTTGAG . 73 6 41 0 . 40 38 2 0 0 ARHGAP35 2909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47423998 47423998 + Missense_Mutation SNP G G A rs142807428 by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_004491 exon1 c.G2066A p.R689Q GCCGGCGGGATAA . 119 51 64 0 G|0.999;A|0.000 5 2 3 0 0 ZC3H4 23211 broad.mit.edu;bcgsc.ca 37 19 47597799 47597799 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZC3H4-74 NM_015168 exon3 c.C228T p.S76S CCCTCCGGAGGTA . 240 11 199 1 . 1 1 0 0 0 FAM83E 54854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 49107038 49107038 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAM83E-91 NM_017708 exon4 c.889delC p.Q297fs GTTTCTGGGGGGG . 117 57 71 0 . 0 0 0 0 0 RASIP1 54922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49238683 49238683 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RASIP1-228 NM_017805 exon4 c.C949T p.R317C CTGAGCGCTCCTT . 189 92 50 0 . 29 18 11 0 0 DHDH 27294 bcgsc.ca 37 19 49445795 49445795 + Missense_Mutation SNP G G A rs140363616 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DHDH-90 NM_014475 exon5 c.G718A p.V240M GCCTCCGTGAGCG . 264 129 247 5 G|1.000;A|0.000 5 4 1 0 0 TRPM4 54795 hgsc.bcm.edu 37 19 49699770 49699770 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRPM4-91 NM_017636 exon17 c.C2284T p.R762C GGGGGCCGCTGCG . 12 8 0 0 . 1 0 1 0 0 FUZ 80199 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 50311889 50311889 + Silent SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FUZ-90 NM_025129 exon9 c.G900C p.L300L GAGGAGCAGCAGC . 122 66 83 0 . 2 0 2 0 0 PNKP 11284 broad.mit.edu 37 19 50370408 50370408 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PNKP-253 NM_007254 exon2 c.A54G p.G18G GGGCGCTCCCCCA . 97 25 39 1 . 33 33 0 0 0 ZNF845 91664 broad.mit.edu 37 19 53856028 53856028 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_138374 exon4 c.C2100T p.F700F GACCTTCGGTCGA . 98 3 70 0 . 0 0 0 0 0 LILRB4 11006 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55177714 55177714 + Missense_Mutation SNP C C T rs201125273 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LILRB4-93 NM_006847 exon8 c.C898T p.R300C TTCCAACGTCCTC . 136 62 140 0 C|0.997;T|0.003 4 4 0 0 0 NLRP2 55655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55494012 55494012 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NLRP2-120 NM_017852 exon6 c.G946A p.V316I GTGCCCGTCCTCC . 129 53 88 0 . 0 0 0 0 0 TNNT1 7138 broad.mit.edu 37 19 55656925 55656925 + Missense_Mutation SNP G G A rs139279150 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNNT1-91 NM_001126132 exon6 c.C115T p.R39C TGGGGCGTTCCTC . 47 4 35 0 G|1.000;T|0.000 0 0 0 0 0 CCDC106 29903 broad.mit.edu 37 19 56162847 56162847 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CCDC106-90 NM_013301 exon5 c.G512A p.R171Q AGGCCCGGGAGAG . 330 8 195 0 . 1 1 0 0 0 ZNF470 388566 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 57088962 57088964 + In_Frame_Del DEL TAT TAT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TAT TAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF470-92 NM_001001668 exon6 c.1165_1167del p.389_389del CGGCGATATTATC . 161 57 104 0 . 0 0 0 0 0 PEG3 5178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 57328441 57328441 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PEG3-164 NM_001146184 exon9 c.T1369C p.C457R TCCCACACTCATC . 398 193 321 1 . 7 0 7 0 0 ZNF419 79744 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 58002904 58002904 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF419-90 NM_001098494 exon3 c.C141T p.D47D TGATGACGCTCAG . 379 122 268 0 . 9 7 2 0 0 ZNF814 730051 ucsc.edu 37 19 58385033 58385033 + Silent SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001144989 exon3 c.T1725C p.S575S CCCATAAGATCTT . 113 1 88 0 . 6 4 2 0 0 ZSCAN22 342945 bcgsc.ca 37 19 58846516 58846516 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZSCAN22-91 NM_181846 exon2 c.C348T p.S116S CAAGAGCGGAGAG . 207 86 164 3 . 1 1 0 0 0 ZBTB45 84878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 59028363 59028363 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZBTB45-90 NM_032792 exon2 c.C678T p.G226G TGGGCCGCCACCT . 224 29 158 0 . 10 8 2 0 0 TPO 7173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 1520736 1520736 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TPO-332 NM_001206744 exon15 c.C2600T p.S867L TCACCTCGACGGT . 70 57 122 1 . 0 0 0 0 0 LPIN1 23175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 11960588 11960588 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LPIN1-156 NM_001261428 exon21 c.G2716A p.V906I TTTACCGTCAACC . 100 75 134 1 . 6 0 6 0 0 APOB 338 broad.mit.edu 37 2 21230766 21230766 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . APOB-175 NM_000384 exon26 c.G8974A p.V2992I AATCGACTTGTGA . 93 4 163 0 . 0 0 0 0 0 EFR3B 22979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25366724 25366724 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_014971 exon18 c.G2043T p.Q681H TCCTCAGCTGACA . 84 69 117 0 . 0 0 0 0 0 SLC30A6 55676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32396391 32396391 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC30A6-90 NM_001193513 exon2 c.C39T p.S13S AAGATCCTTTTTT . 98 42 165 0 . 1 0 1 0 0 FEZ2 9637 hgsc.bcm.edu 37 2 36825137 36825137 + Missense_Mutation SNP G G A rs1544655 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FEZ2-23 NM_001042548 exon1 c.C149T p.P50L CAGGCCGGGGCCG . 4 4 0 0 T|0.817;C|0.180 1 0 1 0 0 SIX3 6496 hgsc.bcm.edu 37 2 45171842 45171842 + Silent SNP A A G rs62840660 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SIX3-90 NM_005413 exon2 c.A942G p.A314A GCGCGCAGACACC . 5 5 0 0 A|0.059;G|0.941 0 0 0 0 0 TMEM247 388946 ucsc.edu 37 2 46707808 46707808 + Missense_Mutation SNP C C G rs74318890 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001145051 exon2 c.C382G p.Q128E CAGCGGCAGCGGC . 259 33 214 4 G|1.000;|0.000 0 0 0 0 0 MSH2 4436 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 47707899 47707900 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MSH2-2445 NM_000251 exon15 c.2523_2524del p.841_842del TGTAATAGAGTGT . 112 91 155 0 . 0 0 0 0 0 XPO1 7514 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 61729431 61729431 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . XPO1-229 NM_003400 exon5 c.G316A p.V106I CAACAACGTATTT . 89 6 111 0 . 43 43 0 0 0 ARHGAP25 9938 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 69049670 69049670 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARHGAP25-274 NM_001007231 exon10 c.1399delA p.K467fs ATCTTTAAAAATG . 110 34 161 0 . 0 0 0 0 0 STAMBP 10617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 74058012 74058012 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . STAMBP-524 NM_006463 exon3 c.C29T p.P10L GCCTCCCGCCCGA . 77 65 99 0 . 19 0 19 0 0 LOXL3 84695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 74763595 74763595 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LOXL3-226 NM_032603 exon6 c.C916T p.R306C GGACACGGGCCTA . 60 50 83 0 . 0 0 0 0 0 GNLY 10578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 85922477 85922477 + Silent SNP C C T rs201139886 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GNLY-90 NM_006433 exon2 c.C87T p.Y29Y GTACTACGACCTG . 145 128 196 0 C|0.999;T|0.000 1 0 1 0 0 GNLY 10578 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 85924745 85924745 + Silent SNP C C T rs147680816 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GNLY-90 NM_006433 exon4 c.C372T p.A124A CGTGGCCGGAGAA . 118 103 132 2 C|1.000;T|0.000 3 3 0 0 0 POU3F3 5455 hgsc.bcm.edu 37 2 105472055 105472055 + Silent SNP T T C rs186512421 by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . POU3F3-45 NM_006236 exon1 c.T87C p.A29A AGGGGCTGGCGGC . 5 4 0 0 T|0.299;C|0.701 0 0 0 0 0 RGPD3 653489 bcgsc.ca 37 2 107049414 107049414 + Missense_Mutation SNP G G A rs199953271 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RGPD3-23 NM_001144013 exon17 c.C2446T p.R816C CTTGGCGAATCAT . 551 67 675 7 . 0 0 0 0 0 RGPD3 653489 bcgsc.ca 37 2 107049425 107049425 + Missense_Mutation SNP A A C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RGPD3-23 NM_001144013 exon17 c.T2435G p.L812R ATTTTCAGTAAAG . 554 84 658 8 . 0 0 0 0 0 ST6GAL2 84620 broad.mit.edu 37 2 107459762 107459762 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ST6GAL2-191 NM_032528 exon2 c.G672A p.A224A CTTCATCGCCTTC . 53 4 73 0 . 0 0 0 0 0 GCC2 9648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 109124031 109124031 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GCC2-91 NM_181453 exon23 c.C5000T p.A1667V AAAATGCTTCCCG . 228 191 381 1 . 1 0 1 0 0 EN1 2019 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 119600797 119600799 + In_Frame_Del DEL TTC TTC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TTC TTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EN1-154 NM_001426 exon2 c.894_896del p.298_299del TTCTCGTTCTTCT . 30 19 52 0 . 0 0 0 0 0 UGGT1 56886 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128945079 128945079 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UGGT1-91 NM_020120 exon40 c.G4533A p.P1511P TGTCCCGGAGTGG . 252 45 312 1 . 18 16 2 0 0 SLC4A10 57282 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 162813676 162813676 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC4A10-229 NM_001178015 exon20 c.C2719T p.R907W GGCATTCGGGAGC . 110 10 116 0 . 0 0 0 0 0 KCNH7 90134 hgsc.bcm.edu;broad.mit.edu 37 2 163236465 163236465 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCNH7-95 NM_033272 exon14 c.C3029G p.S1010C AGTGCAGATGGAC . 123 8 127 0 . 0 0 0 0 0 MYO3B 140469 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 171509587 171509587 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYO3B-530 NM_138995 exon35 c.3982delT p.F1328fs CCTTCCTTTTTTT . 94 40 122 0 . 0 0 0 0 0 CDCA7 83879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 174228042 174228042 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDCA7-91 NM_031942 exon4 c.G473A p.R158Q CAGCGCGGAGTAC . 214 29 337 0 . 0 0 0 0 0 TTN 7273 bcgsc.ca 37 2 179543217 179543217 + Silent SNP C C T rs35112591 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TTN-636 NM_001267550 exon144 c.G33834A p.E11278E GGGTACCTCTGGC . 98 6 115 0 C|0.788;T|0.212 0 0 0 0 0 NAB1 4664 bcgsc.ca 37 2 191524587 191524587 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NAB1-226 NM_005966 exon4 c.G685A p.A229T AAGTTGGCCAAAA . 360 10 482 2 . 8 8 0 0 0 ALS2CR8 79800 hgsc.bcm.edu 37 2 203817288 203817288 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ALS2CR8-136 NM_024744 exon6 c.G313A p.V105I ATGATCGTTGCCA . 43 4 55 0 . 1 1 0 0 0 ABCA12 26154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 215820071 215820071 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCA12-99 NM_173076 exon43 c.C6248T p.S2083F ATCCAGGAAAATG . 201 161 219 0 . 0 0 0 0 0 CCDC108 255101 hgsc.bcm.edu;bcgsc.ca 37 2 219892999 219892999 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CCDC108-94 NM_194302 exon12 c.1775delC p.P592fs ATGTCAGGGGGGT . 95 78 141 1 . 0 0 0 0 0 LRRFIP1 9208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 238617211 238617211 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRFIP1-153 NM_001137550 exon2 c.C121T p.R41W GCAAAACGGGCGG . 304 238 246 1 . 3 1 2 0 0 GPC1 2817 broad.mit.edu;bcgsc.ca 37 2 241401648 241401648 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GPC1-153 NM_002081 exon3 c.G366A p.L122L GACGCTGCAGGCC . 154 7 177 0 . 85 80 5 0 0 ZCCHC3 85364 hgsc.bcm.edu 37 20 278688 278690 + In_Frame_Del DEL CGG CGG - rs5839848 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CGG CGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZCCHC3-90 NM_033089 exon1 c.461_463del p.154_155del ATGAGCCGGCGGC . 15 14 0 0 . 0 0 0 0 0 TCF15 6939 hgsc.bcm.edu 37 20 590456 590456 + Silent SNP A A G rs282164 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TCF15-90 NM_004609 exon1 c.T426C p.R142R CGCGGCACGGAAG . 5 5 0 0 A|0.165;G|0.835 1 0 1 0 0 C20orf194 25943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3275220 3275220 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C20orf194-68 NM_001009984 exon24 c.C2074T p.R692W AACTCCGTTTCTC . 68 24 75 0 . 1 1 0 0 0 GFRA4 64096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3640605 3640605 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GFRA4-90 NM_145762 exon5 c.G851A p.R284H AGGGAGCGTCTCT . 61 25 60 0 . 0 0 0 0 0 LOC149950 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 31196470 31196470 + RNA SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . . . . . TCTGTGCAGCCTC . 38 14 23 0 . 0 0 0 0 0 BPIFB4 149954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 31671498 31671498 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_182519 exon3 c.G495A p.A165A TGGGGCGGTGGGC . 253 115 153 0 . 0 0 0 0 0 CEP250 11190 broad.mit.edu;bcgsc.ca 37 20 34092645 34092645 + Missense_Mutation SNP C C T rs147676735 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CEP250-27 NM_007186 exon30 c.C6448T p.R2150W CTGCAGCGGGAGC . 191 11 179 2 C|1.000;T|0.000 8 8 0 0 0 DLGAP4 22839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35060497 35060497 + Missense_Mutation SNP G G A rs202172659 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DLGAP4-94 NM_014902 exon2 c.G377A p.R126H TTCCCCGTGGCGA . 134 62 98 0 G|0.999;A|0.001 0 0 0 0 0 PPP1R16B 26051 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 37546897 37546897 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PPP1R16B-228 NM_015568 exon11 c.C1292T p.P431L GGGCTCCGGTCAG . 219 18 171 0 . 2 2 0 0 0 PLCG1 5335 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 39795024 39795024 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLCG1-911 NM_182811 exon17 c.G1990A p.E664K GCCCACGAGAGCA . 202 95 186 1 . 2 0 2 0 0 JPH2 57158 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 42815069 42815069 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . JPH2-91 NM_175913 exon1 c.C277T p.R93C CGTAGCGTCCCTT . 150 8 138 0 . 1 1 0 0 0 TTPAL 79183 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 43118014 43118014 + Silent SNP C C T rs180792442 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TTPAL-153 NM_001039199 exon5 c.C861T p.N287N CTGGAACGCGGTA . 206 11 214 0 C|0.999;T|0.000 5 5 0 0 0 PABPC1L 80336 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43559220 43559220 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PABPC1L-47 NM_001124756 exon8 c.C1092T p.Y364Y ACTCTACGTGGCA . 202 87 148 1 . 16 12 4 0 0 DNTTIP1 116092 hgsc.bcm.edu 37 20 44420682 44420682 + Silent SNP T T C rs2664591 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DNTTIP1-91 NM_052951 exon1 c.T39C p.P13P GGGACCTAGCGGG . 6 6 0 0 T|0.311;C|0.689 6 0 6 0 0 ELMO2 63916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45023110 45023110 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ELMO2-91 NM_182764 exon2 c.G12A p.P4P GTCTGACGGTGGT . 379 156 250 0 . 0 0 0 0 0 OCSTAMP 128506 broad.mit.edu;mdanderson.org 37 20 45170427 45170427 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_080721 exon3 c.G1187A p.R396H CGGGGACGCCGGG . 31 12 13 0 . 0 0 0 0 0 SULF2 55959 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46293982 46293982 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SULF2-293 NM_001161841 exon14 c.A1958C p.K653T TTTTTCTTCAGGT . 171 79 94 1 . 148 66 82 0 0 SPATA2 9825 broad.mit.edu 37 20 48524772 48524772 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SPATA2-91 NM_006038 exon2 c.C256T p.H86Y CGCCGTGCAGAGC . 181 6 164 0 . 2 2 0 0 0 BMP7 655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 55777574 55777574 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BMP7-187 NM_001719 exon3 c.G717A p.P239P GTGCCGCGGATTG . 107 46 84 0 . 2 0 2 0 0 RAE1 8480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 55931510 55931510 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RAE1-226 NM_003610 exon4 c.C204T p.C68C TCGCTGCTGGGAA . 141 61 93 0 . 0 0 0 0 0 CDH4 1002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60499460 60499460 + Missense_Mutation SNP C C T rs1051676 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH4-282 NM_001794 exon11 c.C1697T p.A566V CCACGGCGGCAGT . 241 96 208 0 C|1.000;T|0.000 4 1 3 0 0 CDH4 1002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60509119 60509119 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDH4-282 NM_001794 exon15 c.C2385T p.Y795Y GGACTACGACCTC . 181 84 78 0 . 0 0 0 0 0 LAMA5 3911 broad.mit.edu 37 20 60895706 60895706 + Missense_Mutation SNP A A C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LAMA5-93 NM_005560 exon50 c.T6668G p.L2223R GGGCCCAGGGGGC . 98 19 21 1 . 12 11 1 0 0 OGFR 11054 broad.mit.edu 37 20 61443813 61443813 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OGFR-68 NM_007346 exon7 c.C846T p.C282C CCGCTGCAAGTTC . 130 17 45 1 . 66 57 9 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444633 61444633 + Missense_Mutation SNP G G A rs75570150 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OGFR-68 NM_007346 exon7 c.G1666A p.E556K CCAGCCGAGAGCC . 45 8 3 0 . 275 274 1 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444637 61444637 + Missense_Mutation SNP G G C rs78981100 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OGFR-68 NM_007346 exon7 c.G1670C p.S557T CCGAGAGCCCATC . 45 8 3 0 . 292 292 0 0 0 SRMS 6725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62172334 62172334 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SRMS-521 NM_080823 exon8 c.C1304T p.T435M TGCAGCGTCTCGT . 75 35 19 0 . 0 0 0 0 0 TNFRSF6B 8771 hgsc.bcm.edu;broad.mit.edu 37 20 62328346 62328346 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNFRSF6B-651 NM_003823 exon1 c.C226T p.R76C CCACCGCGCCACT . 154 10 23 0 . 8 8 0 0 0 PWP2 5822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45548439 45548439 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PWP2-91 NM_005049 exon20 c.G2517A p.G839G AGCCGGGACGCTG . 109 98 154 0 . 2 0 2 0 0 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 46931077 46931077 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL18A1-90 NM_030582 exon41 c.C4277T p.P1426L AGGGTCCGCTGAA . 66 17 110 0 . 236 165 71 0 0 SLC25A18 83733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 18070754 18070754 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC25A18-90 NM_031481 exon9 c.C639T p.N213N GTTCAACGAGCTC . 173 142 301 0 . 0 0 0 0 0 RTN4R 65078 ucsc.edu;bcgsc.ca 37 22 20230060 20230060 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RTN4R-90 NM_023004 exon2 c.G596A p.R199H AGCCCACGGAAGG . 184 151 153 2 . 82 0 82 0 0 AIFM3 150209 broad.mit.edu 37 22 21332292 21332292 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AIFM3-280 NM_001146288 exon16 c.A1493G p.Q498R ATGCTCAGGGTAT . 107 4 189 1 . 0 0 0 0 0 MYO18B 84700 broad.mit.edu 37 22 26422656 26422656 + Missense_Mutation SNP C C T rs192136611 by1000genomes;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYO18B-142 NM_032608 exon43 c.C6716T p.S2239L CGCTGTCGAGGGA . 73 4 103 0 C|0.999;G|0.000 0 0 0 0 0 SLC5A4 6527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32614516 32614516 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC5A4-90 NM_014227 exon15 c.C1965T p.H655H GTAGCCGTGAATA . 75 66 119 0 . 0 0 0 0 0 TOM1 10043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 35734781 35734781 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TOM1-91 NM_001135732 exon12 c.G1224A p.A408A TGGCGCGGTAAGC . 37 5 33 0 . 1 1 0 0 0 FOXRED2 80020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 36900582 36900582 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FOXRED2-92 NM_001102371 exon3 c.C759A p.T253T GTAGTGGGTGGCC . 87 75 135 1 . 3 0 3 0 0 TRIOBP 11078 hgsc.bcm.edu 37 22 38122462 38122462 + Missense_Mutation SNP A A G rs739138 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIOBP-136 NM_001039141 exon7 c.A3899G p.H1300R GCACCCACAGCCC . 7 7 0 0 A|0.354;G|0.646 0 0 0 0 0 EIF3L 51386 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 38273801 38273801 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EIF3L-69 NM_016091 exon11 c.C1198T p.R400C ATGTTGCGCATGC . 169 140 279 1 . 285 18 267 0 0 SGSM3 27352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 40803553 40803553 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SGSM3-494 NM_015705 exon13 c.G1505A p.R502H GCTTCCGCAAGAA . 35 34 13 0 . 30 0 30 0 0 EP300 2033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 41572252 41572254 + In_Frame_Del DEL TCT TCT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EP300-2011 NM_001429 exon30 c.4781_4783del p.1594_1595del TTCAGGTCTTCTT . 59 41 98 0 . 0 0 0 0 0 TOB2 10766 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41832698 41832698 + Missense_Mutation SNP G G A rs139245662 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TOB2-227 NM_016272 exon2 c.C652T p.R218C CCATGCGAGGCTG . 103 82 93 1 G|1.000;A|0.000 6 0 6 0 0 PKDREJ 10343 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 46653903 46653903 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PKDREJ-156 NM_006071 exon1 c.C5317T p.H1773Y CATTGTGTAACAA . 97 20 136 2 . 2 2 0 0 0 CELSR1 9620 broad.mit.edu 37 22 46835126 46835126 + Missense_Mutation SNP G G A rs150197128 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CELSR1-525 NM_014246 exon3 c.C4366T p.R1456W GGCCCCGGAAGGT . 140 4 198 1 G|1.000;A|0.000 0 0 0 0 0 SBF1 6305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50899065 50899065 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SBF1-90 NM_002972 exon24 c.G3044A p.R1015Q GGGTACCGCAGCT . 87 67 167 1 . 12 0 12 0 0 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 447311 447311 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CHL1-583 NM_006614 exon28 c.A3592G p.I1198V TCATTTATTGGTG . 75 62 118 0 . 4 0 4 0 0 IL17RE 132014 broad.mit.edu 37 3 9953188 9953190 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IL17RE-90 NM_153483 exon13 c.1254_1256del p.418_419del TCACTTCTCCTCA . 276 15 262 0 . 0 0 0 0 0 FANCD2 2177 bcgsc.ca 37 3 10108913 10108913 + Missense_Mutation SNP G G T rs80258959 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FANCD2-229 NM_001018115 exon26 c.G2406T p.Q802H CTGCCAGGAAACA . 176 9 117 1 G|0.990;T|0.010 7 7 0 0 0 IRAK2 3656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 10219666 10219666 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IRAK2-574 NM_001570 exon2 c.G239A p.R80H TGTGCCGCCTGGA . 96 9 92 0 . 0 0 0 0 0 TMEM40 55287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 12778317 12778317 + Missense_Mutation SNP C C T rs201284335 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TMEM40-90 NM_018306 exon9 c.G490A p.V164I GGAGGACGAAATG . 460 54 398 0 C|0.999;T|0.001 1 1 0 0 0 EFHB 151651 bcgsc.ca 37 3 19961331 19961331 + Silent SNP T T C rs2929362 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EFHB-22 NM_144715 exon3 c.A990G p.S330S CAGTACTGAAATT . 164 6 120 0 T|0.442;G|0.068;C|0.104;A|0.385 0 0 0 0 0 NEK10 152110 broad.mit.edu 37 3 27346443 27346443 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NEK10-695 NM_199347 exon13 c.C823T p.R275C GTAGGCGCAGCAA . 87 3 57 0 . 0 0 0 0 0 CNOT10 25904 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 32774948 32774948 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CNOT10-91 NM_001256742 exon11 c.1429delA p.K477fs CCCAGCAAAAAAG . 169 48 144 0 . 0 0 0 0 0 LRRFIP2 9209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 37107722 37107722 + Missense_Mutation SNP G G A rs148787856 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRFIP2-91 NM_006309 exon23 c.C1559T p.T520M TCTCCCGTCTTCA . 146 15 79 0 G|1.000;A|0.000 3 3 0 0 0 ITGA9 3680 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 37514857 37514857 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITGA9-715 NM_002207 exon3 c.G326A p.G109D ATCGGGGCACGTC . 274 117 184 2 . 1 1 0 0 0 SCN5A 6331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 38618243 38618243 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SCN5A-98 NM_198056 exon19 c.C3420T p.S1140S TGCTGTGCTGCCC . 154 60 128 0 . 0 0 0 0 0 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266104 41266104 + Missense_Mutation SNP G G A rs28931589 bycluster TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CTNNB1-24361 NM_001098209 exon3 c.G101A p.G34E ACTCTGGAATCCA . 110 97 210 0 G|1.000;T|0.000 63 3 60 0 0 ZNF445 353274 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 44488379 44488379 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF445-91 NM_181489 exon8 c.G2784A p.P928P TGCAGGCGGGCTA . 101 84 113 1 . 1 0 1 0 0 ALS2CL 259173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 46718502 46718502 + Missense_Mutation SNP C C T rs200208936 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ALS2CL-155 NM_001190707 exon17 c.G1768A p.V590M CACCCACGCCCAG . 46 35 91 0 C|0.999;T|0.000 1 0 1 0 0 SCAP 22937 broad.mit.edu 37 3 47461048 47461048 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SCAP-91 NM_012235 exon13 c.1710delC p.P570fs GTGGCTGGGGGGC . 139 7 212 0 . 0 0 0 0 0 NME6 10201 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 48336637 48336637 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NME6-115 NM_005793 exon5 c.C346T p.R116C CATGGCGTGCTCG . 158 12 236 0 . 9 8 1 0 0 CELSR3 1951 broad.mit.edu;bcgsc.ca 37 3 48693263 48693263 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CELSR3-523 NM_001407 exon4 c.C4647T p.S1549S CAGCCCGCTCTGC . 121 17 187 1 . 0 0 0 0 0 GMPPB 29925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49760038 49760038 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GMPPB-90 NM_021971 exon5 c.G552T p.Q184H GATGCGCTGCAGC . 150 42 225 0 . 0 0 0 0 0 RBM6 10180 broad.mit.edu 37 3 50097175 50097175 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RBM6-280 NM_005777 exon11 c.C2224T p.R742X GGAAAACGAAGGT . 123 4 191 0 . 3 3 0 0 0 SEMA3B 7869 broad.mit.edu 37 3 50310793 50310795 + RNA DEL CTT CTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEMA3B-840 . . . . AATCTACTTCTTC . 377 8 529 0 . 0 0 0 0 0 TLR9 54106 broad.mit.edu 37 3 52257538 52257538 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TLR9-587 NM_017442 exon2 c.G794A p.C265Y TCCATGCAGGGGT . 158 5 212 0 . 3 3 0 0 0 STAB1 23166 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52550142 52550142 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . STAB1-139 NM_015136 exon38 c.G4032A p.G1344G CCATGGGCAGTGC . 122 13 106 1 . 2 2 0 0 0 STAB1 23166 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52554026 52554026 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . STAB1-139 NM_015136 exon51 c.G5302C p.D1768H CCCACAGACGCCG . 250 109 237 2 . 5 4 1 0 0 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52584594 52584594 + Silent SNP T T A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PBRM1-575 NM_018313 exon29 c.A4419T p.P1473P TCCAGCTGGATGT . 71 39 51 0 . 18 10 8 0 0 ITIH1 3697 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52821065 52821065 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITIH1-93 NM_002215 exon14 c.G1838T p.G613V TCAGGGGCATGGC . 297 45 276 1 . 0 0 0 0 0 ITIH4 3700 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52847474 52847474 + Missense_Mutation SNP G G A rs140372968 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITIH4-46 NM_002218 exon24 c.C2756T p.P919L ACTCCCGGGGGCC . 197 92 179 1 G|1.000;A|0.000 12 5 7 0 0 ACTR8 93973 broad.mit.edu;bcgsc.ca 37 3 53911367 53911367 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ACTR8-91 NM_022899 exon5 c.C558T p.I186I TCTTCTGATAGGC . 254 12 177 0 . 6 6 0 0 0 DNASE1L3 1776 ucsc.edu;bcgsc.ca 37 3 58196552 58196552 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DNASE1L3-153 NM_004944 exon1 c.G82A p.V28I ACCTGACGTTGAA . 258 110 275 2 . 2 2 0 0 0 FEZF2 55079 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 62355881 62355881 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FEZF2-278 NM_018008 exon5 c.C1257T p.C419C AGTGGCGCACGTG . 407 21 367 0 . 0 0 0 0 0 MAGI1 9223 hgsc.bcm.edu;bcgsc.ca 37 3 65372850 65372851 + Frame_Shift_Del DEL TC TC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAGI1-661 NM_015520 exon15 c.2467_2468del p.823_823del TTGATTTCTCTCT . 147 62 87 1 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550756 66550756 + Missense_Mutation SNP G G C rs1403625 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRIG1-230 NM_015541 exon1 c.C76G p.L26V GCCGAAGCAAAAG . 7 7 0 0 G|0.237;C|0.763 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 10 10 0 0 G|0.252;C|0.748 0 0 0 0 0 FOXP1 27086 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 71027087 71027087 + Nonsense_Mutation DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FOXP1-415 NM_001244815 exon10 c.1246delC p.L416X GAGTCAGGGGGGC . 135 18 72 0 . 0 0 0 0 0 ROBO2 6092 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 77623681 77623681 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ROBO2-328 NM_002942 exon14 c.A2003G p.Y668C AAGGCTACCGAGT . 244 14 152 0 . 0 0 0 0 0 GABRR3 200959 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 97744481 97744481 + RNA SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GABRR3-68 . . . . AGGCCGCGCTTTG . 151 65 97 0 . 0 0 0 0 0 TFG 10342 bcgsc.ca 37 3 100451359 100451359 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TFG-861 NM_006070 exon5 c.G423T p.V141V TACTGTGGATGGT . 148 6 114 0 . 0 0 0 0 0 MYH15 22989 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 108219012 108219012 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYH15-73 NM_014981 exon5 c.509delC p.P170fs ATGTGAGGGGGAG . 150 16 91 0 . 0 0 0 0 0 TMPRSS7 344805 broad.mit.edu 37 3 111766778 111766778 + Missense_Mutation SNP A A T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TMPRSS7-70 NM_001042575 exon5 c.A545T p.D182V TTTACGACTCCCT . 198 6 186 2 . 0 0 0 0 0 DRD3 1814 broad.mit.edu 37 3 113890760 113890760 + Missense_Mutation SNP C C A rs201554805 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DRD3-93 NM_000796 exon2 c.G80T p.R27L TGTGGGCGGGCCT . 200 4 158 0 . 0 0 0 0 0 POPDC2 64091 broad.mit.edu 37 3 119379040 119379040 + Silent SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . POPDC2-90 NM_022135 exon1 c.T231C p.I77I AAGAACAATGTCC . 280 7 238 0 . 0 0 0 0 0 KALRN 8997 broad.mit.edu 37 3 124175505 124175505 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KALRN-738 NM_003947 exon23 c.C3778T p.R1260W TCGGATCGGGAGG . 396 9 306 0 . 1 1 0 0 0 CHST13 166012 hgsc.bcm.edu 37 3 126261180 126261180 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CHST13-90 NM_152889 exon3 c.A785G p.D262G GCTACGACGTCGT . 14 5 0 0 . 0 0 0 0 0 PLXNA1 5361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 126726724 126726724 + Missense_Mutation SNP G G A rs149327396 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLXNA1-93 NM_032242 exon8 c.G2080A p.A694T GACTGCGCCTTCC . 191 80 192 0 G|1.000;A|0.000 4 2 2 0 0 PLXNA1 5361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 126752807 126752807 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLXNA1-93 NM_032242 exon31 c.C5638T p.R1880W CGGCAGCGGCTGC . 467 98 266 0 . 58 49 9 0 0 MRPL3 11222 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 131219274 131219274 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MRPL3-90 NM_007208 exon3 c.G369A p.Q123Q TCTTACCTGAAGT . 115 48 91 0 . 1 0 1 0 0 EPHB1 2047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 134911554 134911554 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EPHB1-1492 NM_004441 exon11 c.C2019T p.G673G CATGGGCCAGTTC . 404 171 337 1 . 0 0 0 0 0 PRR23B 389151 hgsc.bcm.edu 37 3 138739402 138739402 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRR23B-135 NM_001013650 exon1 c.C102T p.P34P GCCCGCGGGCTCC . 7 4 0 0 . 0 0 0 0 0 TRIM42 287015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 140407267 140407267 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIM42-227 NM_152616 exon3 c.C1743T p.S581S AGACAGCCAGTCT . 215 76 140 0 . 0 0 0 0 0 ANKUB1 389161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 149485286 149485286 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001144960 exon5 c.A1163C p.K388T ACAGGTTTGCTGC . 190 14 131 0 . 0 0 0 0 0 GPR87 53836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151011993 151011993 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GPR87-153 NM_023915 exon3 c.G1041A p.S347S AACTTCCGATCTT . 381 182 276 1 . 0 0 0 0 0 ARHGEF26 26084 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 153970947 153970947 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARHGEF26-47 NM_001251962 exon13 c.C2343T p.S781S CAGCAGCGGGAAG . 481 62 349 1 . 0 0 0 0 0 SI 6476 broad.mit.edu 37 3 164712168 164712168 + Missense_Mutation SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SI-104 NM_001041 exon41 c.A4718G p.E1573G AAAGTTTCATTCC . 325 8 236 0 . 0 0 0 0 0 LRRC34 151827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169511575 169511575 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRC34-90 NM_001172779 exon11 c.G1243A p.V415M GCTCCACATCTGT . 195 21 108 0 . 1 1 0 0 0 PRKCI 5584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 169985778 169985778 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRKCI-1378 NM_002740 exon5 c.G440A p.R147H CCAAGCGTTTCAA . 93 33 56 0 . 0 0 0 0 0 FNDC3B 64778 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 172070715 172070715 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FNDC3B-155 NM_001135095 exon22 c.T2637C p.P879P CTACCCTGATTCA . 177 69 133 2 . 12 6 6 0 0 USP13 8975 bcgsc.ca 37 3 179437819 179437819 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . USP13-659 NM_003940 exon7 c.T897C p.H299H TATGCATGGGGTG . 126 6 70 1 . 0 0 0 0 0 ABCC5 10057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183732094 183732094 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCC5-137 NM_005688 exon2 c.G87A p.T29T TCTGTGCGTCCCA . 130 14 93 0 . 16 14 2 0 0 ECE2 9718 broad.mit.edu 37 3 183994339 183994339 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ECE2-94 NM_001100121 exon2 c.110delC p.S37fs GGGCCTCCCCGGA . 198 13 147 0 . 0 0 0 0 0 EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 184042024 184042025 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EIF4G1-344 NM_001194946 exon18 c.2529_2530del p.843_844del AGTGACTGTGAAC . 376 92 298 0 . 0 0 0 0 0 EPHB3 2049 ucsc.edu;bcgsc.ca 37 3 184290407 184290407 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EPHB3-1455 NM_004443 exon3 c.G299A p.R100Q GGCGGCGGGATGT . 310 156 249 3 . 4 2 2 0 0 EPHB3 2049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184297350 184297350 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EPHB3-1455 NM_004443 exon10 c.C1887T p.D629D GATCGACGTGTCC . 441 47 390 0 . 10 9 1 0 0 FETUB 26998 hgsc.bcm.edu;broad.mit.edu 37 3 186362544 186362544 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FETUB-92 NM_014375 exon4 c.429delA p.S143fs AGTTTCAAAAAAA . 60 29 49 0 . 0 0 0 0 0 LRRC15 131578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 194080702 194080702 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRC15-71 NM_001135057 exon3 c.C1089T p.D363D GTTCCCGTCCAGG . 227 108 231 0 . 0 0 0 0 0 APOD 347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 195306326 195306326 + Missense_Mutation SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . APOD-516 NM_001647 exon2 c.A7C p.M3L GCAGCATCACCAT . 71 27 56 0 . 11 11 0 0 0 MUC20 200958 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 195453329 195453329 + Nonsense_Mutation SNP C C T rs73203946 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_152673 exon3 c.C1342T p.R448X AGCAGCCGAGGGA . 682 162 575 0 C|0.967;A|0.033 41 32 9 0 0 MUC4 4585 ucsc.edu;bcgsc.ca 37 3 195516022 195516022 + Missense_Mutation SNP G G A rs148722108 by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MUC4-90 NM_018406 exon2 c.C2429T p.A810V CCACTCGCCCCGG . 213 84 193 2 G|0.999;A|0.001 0 0 0 0 0 MUC4 4585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 195516579 195516579 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MUC4-90 NM_018406 exon2 c.A1872G p.T624T GGTGCTTGTGGAA . 282 117 246 0 . 0 0 0 0 0 LRCH3 84859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 197598289 197598289 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRCH3-91 NM_032773 exon19 c.C2086T p.R696X CATGTGCGACCTC . 334 161 249 1 . 9 7 2 0 0 LMLN 89782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 197702954 197702954 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LMLN-91 NM_001136049 exon4 c.C403T p.R135X GTCCGTCGACCTG . 153 69 119 0 . 1 1 0 0 0 RGS12 6002 broad.mit.edu 37 4 3432439 3432439 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RGS12-226 NM_002926 exon17 c.G3871A p.G1291R CCCCCCGGGCAGA . 40 3 34 0 . 24 23 1 0 0 HGFAC 3083 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3444827 3444827 + Missense_Mutation SNP C C T rs140691145 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HGFAC-514 NM_001528 exon3 c.C349T p.R117C GGGGGCCGCATGC . 38 31 26 0 C|1.000;T|0.000 0 0 0 0 0 OTOP1 133060 broad.mit.edu 37 4 4228274 4228282 + In_Frame_Del DEL CCACAGCAG CCACAGCAG - rs75328065 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OTOP1-92 NM_177998 exon1 c.310_318del p.104_106del CAGCATCCACAGC . 45 10 4 0 . 0 0 0 0 0 PSAPL1 768239 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 7436430 7436430 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PSAPL1-68 NM_001085382 exon1 c.G177A p.A59A AGACTTCGCGGTG . 179 47 314 1 . 4 3 1 0 0 FAM184B 27146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 17711136 17711136 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAM184B-23 NM_015688 exon2 c.C273T p.C91C CTCTGCGCAGCCC . 66 50 91 0 . 0 0 0 0 0 ARAP2 116984 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 36069850 36069851 + Frame_Shift_Del DEL TT TT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TT TT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARAP2-93 NM_015230 exon33 c.4793_4794del p.1598_1598del GGACTCTTTATCA . 38 34 56 0 . 0 0 0 0 0 TMEM165 55858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 56283354 56283354 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TMEM165-514 NM_018475 exon3 c.T549C p.P183P GAGCCCTGATGAG . 52 43 100 0 . 35 2 33 0 0 CXCL9 4283 broad.mit.edu 37 4 76924817 76924817 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CXCL9-227 NM_002416 exon4 c.312delA p.K104fs TTGATGTTTTTTC . 14 5 24 0 . 0 0 0 0 0 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 78987147 78987147 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FRAS1-68 NM_001166133 exon2 c.G85A p.V29I GCTTGTGTCTATC . 53 41 95 0 . 0 0 0 0 0 BMP3 651 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 81967503 81967503 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BMP3-518 NM_001201 exon2 c.928delA p.K310fs CAGTATAAAAAGG . 79 69 108 0 . 0 0 0 0 0 BMP3 651 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 4 81967507 81967507 + Missense_Mutation SNP A A T rs138325448 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BMP3-518 NM_001201 exon2 c.A932T p.K311M ATAAAAAGGATGA . 80 73 103 0 A|1.000;G|0.000 0 0 0 0 0 METAP1 23173 bcgsc.ca 37 4 99982342 99982342 + Silent SNP T T G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_015143 exon11 c.T1035G p.T345T TTGGACTGCGGTG . 101 44 180 4 . 10 5 5 0 0 ADH7 131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100349278 100349278 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADH7-227 NM_001166504 exon4 c.C373T p.R125C GGTTGCGACAAGC . 133 106 157 0 . 0 0 0 0 0 DDIT4L 115265 bcgsc.ca 37 4 101108877 101108877 + Missense_Mutation SNP T T C rs201713115 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DDIT4L-91 NM_145244 exon3 c.A539G p.K180R TAAAGTTTTTTCT . 104 5 146 1 . 7 7 0 0 0 TET2 54790 broad.mit.edu;bcgsc.ca 37 4 106196951 106196951 + Missense_Mutation SNP A A G rs2454206 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TET2-4618 NM_001127208 exon11 c.A5284G p.I1762V TCTCACATAATCC . 57 5 83 0 A|0.768;G|0.232 1 1 0 0 0 QRFPR 84109 hgsc.bcm.edu;bcgsc.ca 37 4 122301511 122301513 + In_Frame_Del DEL AGA AGA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AGA AGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . QRFPR-90 NM_198179 exon1 c.290_292del p.97_98del GAATGCAGAAGAA . 134 110 142 1 . 0 0 0 0 0 FBXW7 55294 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 153249473 153249473 + Silent SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FBXW7-6296 NM_033632 exon9 c.T1305C p.I435I TCCACTAATGATG . 130 111 170 2 . 3 0 3 0 0 FAM198B 51313 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 159092445 159092445 + Missense_Mutation SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAM198B-90 NM_016613 exon2 c.G83C p.S28T CGGCTGCTCCAGA . 123 105 138 0 . 6 0 6 0 0 SNX25 83891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 186272686 186272686 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SNX25-273 NM_031953 exon14 c.G1897A p.V633M ATCGACGTGCAGG . 68 49 98 0 . 4 0 4 0 0 FAT1 2195 broad.mit.edu 37 4 187539571 187539574 + Frame_Shift_Del DEL ATCT ATCT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAT1-34 NM_005245 exon10 c.8166_8169del p.2722_2723del GATGAGATCTATC . 111 8 193 0 . 0 0 0 0 0 LRRC14B 389257 hgsc.bcm.edu;broad.mit.edu 37 5 192355 192355 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRRC14B-69 NM_001080478 exon1 c.C702A p.A234A TCTGGCCCAGGTG . 159 12 13 0 . 0 0 0 0 0 DAP 1611 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 10681252 10681252 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DAP-90 NM_004394 exon4 c.G225A p.A75A CACCTGCGCAGCC . 94 35 64 1 . 52 24 28 0 0 IL7R 3575 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 35867541 35867541 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IL7R-157 NM_002185 exon3 c.355delA p.K119fs ACCTGCAAAAAAA . 70 20 37 0 . 0 0 0 0 0 DDX4 54514 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 55056049 55056049 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DDX4-227 NM_001166533 exon4 c.G149A p.R50Q CTTCTCGAAGAGA . 150 68 97 1 . 0 0 0 0 0 DDX4 54514 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 55063742 55063742 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DDX4-227 NM_001142549 exon7 c.G368T p.R123L CAACACGGAACAG . 220 108 173 1 . 0 0 0 0 0 ERCC8 1161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 60224762 60224765 + Frame_Shift_Del DEL TTTA TTTA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TTTA TTTA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ERCC8-227 NM_000082 exon2 c.99_102del p.33_34del TCTGTCTTTATTT . 107 44 75 0 . 0 0 0 0 0 BDP1 55814 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 70858262 70858262 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BDP1-92 NM_018429 exon38 c.7658delA p.E2553fs GCCAGGAAAAAAA . 111 13 66 0 . 0 0 0 0 0 NSA2 10412 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 74066537 74066539 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NSA2-91 NM_001271665 exon4 c.424_426del p.142_142del AAGAGAAAGAAGA . 608 256 392 0 . 0 0 0 0 0 PDE8B 8622 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 76709039 76709039 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PDE8B-90 NM_003719 exon17 c.G1816A p.A606T ATCGAAGCCAACT . 232 25 161 1 . 35 35 0 0 0 NR2F1 7025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 92929487 92929487 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NR2F1-227 NM_005654 exon3 c.G1211A p.R404H TCATCCGCGATAT . 332 165 332 1 . 1 1 0 0 0 KIAA0825 285600 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 93807171 93807171 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA0825-91 NM_001145678 exon9 c.1721delA p.K574fs ACTCACTTTTTAG . 136 70 107 0 . 0 0 0 0 0 WDR36 134430 broad.mit.edu 37 5 110428267 110428267 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . WDR36-92 NM_139281 exon1 c.G281T p.R94L TCAAGCGCCGGTT . 116 10 59 2 . 0 0 0 0 0 SEMA6A 57556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 115813772 115813772 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEMA6A-92 NM_020796 exon14 c.G1506A p.A502A AGAGAACGCAACA . 260 29 207 0 . 7 7 0 0 0 SEPT8 23176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 132097247 132097247 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SEPT8-70 NM_015146 exon7 c.C865T p.R289C GCTCGCGGAGGTC . 156 72 104 0 . 74 41 33 0 0 SOWAHA 134548 hgsc.bcm.edu 37 5 132149684 132149684 + Missense_Mutation SNP G G C rs40274 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_175873 exon1 c.G371C p.R124P TGGTCCGGGTGCC . 10 10 0 0 G|0.980;C|0.020 0 0 0 0 0 FSTL4 23105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 132569152 132569152 + Silent SNP G G A rs190908572 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FSTL4-91 NM_015082 exon8 c.C972T p.S324S GTGGCCGGAAGCA . 290 133 276 1 G|0.999;A|0.000 19 10 9 0 0 BRD8 10902 broad.mit.edu;bcgsc.ca 37 5 137502305 137502305 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BRD8-91 NM_006696 exon11 c.C1118A p.P373H TCTACAGGGGGTG . 266 8 208 1 . 13 11 2 0 0 KDM3B 51780 broad.mit.edu 37 5 137708468 137708468 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KDM3B-542 NM_016604 exon2 c.298delC p.P100fs TGGGCGCCCCGTG . 194 7 143 0 . 0 0 0 0 0 EGR1 1958 broad.mit.edu 37 5 137803250 137803250 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EGR1-227 NM_001964 exon2 c.G1112A p.R371H AGTGCCGCATCTG . 237 7 188 0 . 4 4 0 0 0 APBB3 10307 broad.mit.edu;bcgsc.ca 37 5 139939977 139939977 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . APBB3-92 NM_006051 exon11 c.G1166A p.R389H CTCTGACGGCCCA . 430 12 337 0 . 117 111 6 0 0 PCDHA2 56146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140174695 140174695 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHA2-94 NM_031495 exon1 c.C146T p.A49V GCATCGCGCAGGA . 158 78 46 0 . 3 3 0 0 0 PCDHA12 56137 broad.mit.edu;bcgsc.ca 37 5 140256782 140256782 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_018903 exon1 c.C1725T p.G575G AGGAGGCGCAGTT . 672 332 57 2 . 0 0 0 0 0 PCDHB10 56126 broad.mit.edu 37 5 140573347 140573347 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHB10-92 NM_018930 exon1 c.G1222A p.A408T GAAGGCGCGCTGG . 227 6 155 0 . 2 2 0 0 0 PCDHB10 56126 broad.mit.edu 37 5 140574170 140574175 + In_Frame_Del DEL AGGCCG AGGCCG - rs58244182 bycluster;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHB10-92 NM_018930 exon1 c.2045_2050del p.682_684del AGGCCCAGGCCGA . 92 20 13 0 -|0.750;GGCCGA|0.250 0 0 0 0 0 PCDHGA3 56112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140725147 140725147 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHGA3-68 NM_032011 exon1 c.C1547T p.A516V TATACGCGCTGAG . 527 178 340 0 . 4 2 2 0 0 PCDHGA3 56112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140725295 140725295 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHGA3-68 NM_032011 exon1 c.C1695T p.P565P GTACCCCGCCCTC . 468 99 190 0 . 6 6 0 0 0 PCDHGA3 56112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140725299 140725299 + Missense_Mutation SNP C C T rs201819603 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHGA3-68 NM_032011 exon1 c.C1699T p.L567F CCCGCCCTCCCCA . 454 92 183 0 C|0.999;T|0.001 8 8 0 0 0 PCDHGA12 26025 hgsc.bcm.edu 37 5 140812776 140812776 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHGA12-27 NM_032094 exon1 c.2450delT p.L817fs TCTTTCTTTTTTT . 70 34 51 4 . 0 0 0 0 0 CYFIP2 26999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 156746911 156746911 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CYFIP2-22 NM_001037332 exon14 c.C1498T p.R500W GCGGTACGGAAGA . 210 86 197 0 . 10 5 5 0 0 LCP2 3937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169685169 169685169 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LCP2-23 NM_005565 exon16 c.G972A p.V324V CTGATGCACTGTG . 155 18 120 0 . 0 0 0 0 0 STC2 8614 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 172744904 172744904 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . STC2-93 NM_003714 exon4 c.C855T p.S285S GCTTCCGGAAGGT . 160 10 119 0 . 28 28 0 0 0 KIAA1191 57179 hgsc.bcm.edu;bcgsc.ca 37 5 175775319 175775320 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA1191-91 NM_020444 exon7 c.499_500del p.167_167del GGCTGCCTCTCTT . 155 78 117 2 . 0 0 0 0 0 RNF44 22838 broad.mit.edu;bcgsc.ca 37 5 175959061 175959061 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RNF44-658 NM_014901 exon3 c.C241T p.R81X GCATTCGGGGGCT . 225 10 107 0 . 34 32 2 0 0 PROP1 5626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 177420005 177420005 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PROP1-90 NM_006261 exon3 c.G386A p.R129H AGTGAGCGCTCTT . 141 49 101 0 . 0 0 0 0 0 ADAMTS2 9509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178567010 178567010 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADAMTS2-228 NM_014244 exon11 c.G1656A p.W552X TGTCAGCCAGATG . 281 147 187 0 . 0 0 0 0 0 RIOK1 83732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 7393387 7393387 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RIOK1-336 NM_031480 exon2 c.C127T p.L43F GAAGACCTTCAAG . 84 69 130 1 . 6 0 6 0 0 NEDD9 4739 broad.mit.edu 37 6 11192636 11192636 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NEDD9-226 NM_001142393 exon5 c.C605T p.S202L GGAACTGAAAACA . 105 4 130 0 . 2 2 0 0 0 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12162023 12162023 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HIVEP1-139 NM_002114 exon8 c.G6839A p.R2280H GGCAGCGTGCTGC . 121 92 183 0 . 18 0 18 0 0 MYLIP 29116 broad.mit.edu 37 6 16145408 16145408 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYLIP-91 NM_013262 exon6 c.C1108T p.Q370X TGCCAGCAGACCC . 174 5 242 0 . 2 2 0 0 0 ATXN1 6310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 16306908 16306908 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATXN1-93 NM_001128164 exon8 c.C2100T p.P700P ATCCACGGGCTGG . 97 81 144 1 . 0 0 0 0 0 ATXN1 6310 hgsc.bcm.edu 37 6 16327924 16327924 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATXN1-93 NM_001128164 exon7 c.G618T p.Q206H CTGCTGCTGCTGC . 47 4 20 0 . 2 2 0 0 0 PRL 5617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 22294740 22294740 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRL-90 NM_001163558 exon3 c.C102A p.G34G AGCCCCGCCGGGA . 238 72 314 0 . 0 0 0 0 0 HFE 3077 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26093089 26093089 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HFE-90 NM_000410 exon4 c.C793A p.Q265K ACCTACCAGGGCT . 286 74 439 2 . 1 1 0 0 0 BTN2A2 10385 hgsc.bcm.edu;bcgsc.ca 37 6 26384116 26384118 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BTN2A2-90 NM_181531 exon2 c.67_69del p.23_23del CTCCTCCTTCTCA . 114 95 169 1 . 0 0 0 0 0 BAG6 7917 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31615616 31615617 + Frame_Shift_Del DEL GA GA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BAG6-154 NM_004639 exon7 c.557_558del p.186_186del GTAGGGGAGAGTC . 17 10 34 0 . 0 0 0 0 0 VARS 7407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31747038 31747038 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . VARS-93 NM_006295 exon29 c.C3432T p.G1144G CAGGGCGCCCGTG . 65 59 36 0 . 94 8 82 4 0 EHMT2 10919 ucsc.edu;bcgsc.ca 37 6 31860337 31860337 + Silent SNP T T C rs535586 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EHMT2-91 NM_025256 exon7 c.A711G p.S237S CTCCTCTGACTAG . 62 7 95 1 T|0.179;G|0.170 0 0 0 0 0 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 32037421 32037421 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNXB-90 NM_019105 exon15 c.G5496A p.P1832P CAGGCCCGGCACG . 85 7 80 0 . 0 0 0 0 0 ZBTB9 221504 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 33423520 33423522 + In_Frame_Del DEL GAG GAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 GAG GAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZBTB9-90 NM_152735 exon2 c.643_645del p.215_215del GAAGAAGAGGAGG . 61 16 79 0 . 0 0 0 0 0 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33638975 33638975 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ITPR3-1085 NM_002224 exon21 c.G2620A p.G874S TACTTCGGCTTCT . 152 35 181 0 . 1 0 1 0 0 BRPF3 27154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 36179103 36179103 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BRPF3-92 NM_015695 exon7 c.G2248T p.E750X CTGCTGGAGAAAC . 51 47 77 0 . 3 0 3 0 0 LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 40400435 40400435 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . LRFN2-93 NM_020737 exon2 c.G418A p.A140T CATCTGCGATGCC . 68 56 77 0 . 0 0 0 0 0 UBR2 23304 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 42627467 42627467 + Missense_Mutation SNP G G A rs147922807 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UBR2-94 NM_015255 exon30 c.G3316A p.V1106I CAATTCGTTACAT . 110 88 142 0 G|0.999;A|0.001 13 0 13 0 0 RRP36 88745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 42992729 42992729 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RRP36-90 NM_033112 exon2 c.C137T p.S46F GCACATCTAACAT . 71 26 101 0 . 0 0 0 0 0 TTBK1 84630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43230559 43230559 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TTBK1-353 NM_032538 exon13 c.G1457A p.R486H CCTCGCGCCAGGC . 112 26 50 0 . 0 0 0 0 0 ABCC10 89845 broad.mit.edu;bcgsc.ca 37 6 43415084 43415084 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCC10-96 NM_001198934 exon17 c.G3643A p.V1215I GTGAGCGTCGAGC . 59 4 91 1 . 13 13 0 0 0 CAPN11 11131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 44144037 44144037 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CAPN11-136 NM_007058 exon9 c.C963A p.P321P GAATCCCTGGGGC . 125 32 147 0 . 0 0 0 0 0 TINAG 27283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 54185431 54185431 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TINAG-93 NM_014464 exon2 c.G410T p.C137F AAAACTGCAACTC . 27 17 47 0 . 0 0 0 0 0 PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 64395054 64395054 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PHF3-229 NM_015153 exon3 c.C1431T p.S477S AAGTAGCGTTTCT . 136 112 187 1 . 6 0 6 0 0 COL19A1 1310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 70873275 70873275 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL19A1-156 NM_001858 exon36 c.C2387T p.A796V CAGGAGCAAAAGG . 82 61 108 0 . 0 0 0 0 0 ARMC2 84071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 109249377 109249377 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARMC2-68 NM_032131 exon11 c.G1437A p.T479T CTGCACGGCAATG . 117 59 211 0 . 1 1 0 0 0 SESN1 27244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 109308793 109308793 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SESN1-227 NM_014454 exon10 c.C1610T p.A537V AGTTCTGCTTGCA . 50 32 62 0 . 6 2 4 0 0 GPR6 2830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 110300812 110300812 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GPR6-90 NM_005284 exon1 c.G497A p.R166H TGGACCGCTACCT . 75 60 102 0 . 0 0 0 0 0 C6orf170 221322 broad.mit.edu;bcgsc.ca 37 6 121655474 121655474 + Missense_Mutation SNP A A C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C6orf170-92 NM_152730 exon1 c.T103G p.C35G CGGCACACTCCAG . 312 21 357 1 . 0 0 0 0 0 MED23 9439 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 131944491 131944491 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MED23-24 NM_015979 exon5 c.G396T p.K132N ATATACCTTGTAA . 20 6 30 0 . 0 0 0 0 0 TCF21 6943 broad.mit.edu;bcgsc.ca 37 6 134210849 134210849 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TCF21-90 NM_003206 exon1 c.C314T p.T105I AGACCACCCTGCC . 181 9 192 1 . 1 1 0 0 0 NHSL1 57224 broad.mit.edu;bcgsc.ca 37 6 138817392 138817392 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NHSL1-68 NM_020464 exon2 c.C319T p.R107C CTTGGCGGTGCAG . 95 6 129 0 . 0 0 0 0 0 PLAGL1 5325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 144269185 144269185 + Missense_Mutation SNP C C T rs201696236 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLAGL1-91 NM_001080953 exon6 c.G89A p.R30Q TACGGCCGCTCCC . 272 232 310 1 . 0 0 0 0 0 SNX9 51429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 158349722 158349722 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SNX9-226 NM_016224 exon12 c.C1276T p.R426C TGGAAGCGCTGCA . 55 48 80 0 . 0 0 0 0 0 FNDC1 84624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 159660704 159660704 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FNDC1-138 NM_032532 exon14 c.C4336T p.P1446S ACCCATCCCCCTA . 51 31 87 0 . 0 0 0 0 0 SLC22A3 6581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160864677 160864677 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLC22A3-517 NM_021977 exon9 c.G1413A p.S471S AGTTTCGCTCTGT . 42 35 55 0 . 19 0 19 0 0 PLG 5340 broad.mit.edu;bcgsc.ca 37 6 161139344 161139344 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLG-94 NM_000301 exon8 c.C806A p.S269Y CATCTTCTGGTCC . 129 6 182 0 . 0 0 0 0 0 PRR18 285800 hgsc.bcm.edu 37 6 166720806 166720806 + Silent SNP G G C rs911203 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRR18-514 NM_175922 exon1 c.C825G p.S275S AGCCGCGGACTCC . 5 5 0 0 G|0.796;C|0.204 0 0 0 0 0 SMOC2 64094 hgsc.bcm.edu 37 6 168842113 168842113 + Silent SNP T T G rs73270928 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SMOC2-91 NM_022138 exon1 c.T63G p.A21A GCCCGCTCAGAAG . 25 20 5 0 T|0.654;G|0.346 0 0 0 0 0 CYP2W1 54905 hgsc.bcm.edu 37 7 1027032 1027032 + Silent SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CYP2W1-90 NM_017781 exon7 c.C1008G p.P336P GACTCCCCGGCTG . 45 20 7 0 . 6 0 6 0 0 USP42 84132 hgsc.bcm.edu 37 7 6193521 6193521 + Missense_Mutation SNP G G C rs61729726 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . USP42-659 NM_032172 exon15 c.G2336C p.R779P CGCCCCGCGATCC . 13 6 0 0 G|0.456;C|0.544 3 1 2 0 0 USP42 84132 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 6193968 6193968 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . USP42-659 NM_032172 exon15 c.C2783T p.A928V ACGCCGCGGCGCC . 116 73 34 0 . 4 1 3 0 0 GRID2IP 392862 broad.mit.edu;bcgsc.ca 37 7 6550278 6550278 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001145118 exon10 c.G1615A p.D539N TGCCGTCGCCTGC . 81 38 75 2 . 0 0 0 0 0 SP8 221833 broad.mit.edu 37 7 20824941 20824943 + In_Frame_Del DEL GCC GCC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SP8-91 NM_182700 exon2 c.493_495del p.165_165del GGAGGAGCCGCCG . 46 10 18 0 . 0 0 0 0 0 HOXA3 3200 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 27147667 27147667 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HOXA3-153 NM_030661 exon3 c.1199delG p.G400fs CCGGCACCCCCAT . 76 37 23 0 . 0 0 0 0 0 PRR15 222171 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 29606205 29606205 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRR15-46 NM_175887 exon2 c.G260A p.R87H GCCGCCGCAATTT . 88 14 57 0 . 14 11 3 0 0 NOD1 10392 hgsc.bcm.edu;bcgsc.ca 37 7 30491510 30491510 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NOD1-229 NM_006092 exon6 c.1523delG p.G508fs TGGTCACCCCCGG . 94 40 92 1 . 0 0 0 0 0 MYO1G 64005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45014805 45014805 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MYO1G-137 NM_033054 exon5 c.G586A p.V196M CACCCACGTGCTG . 179 80 161 0 . 0 0 0 0 0 TNS3 64759 broad.mit.edu 37 7 47331569 47331569 + Silent SNP C C G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNS3-94 NM_022748 exon27 c.G3912C p.L1304L CTTCAACAGCTCA . 88 3 67 0 . 1 1 0 0 0 EGFR 1956 broad.mit.edu;bcgsc.ca 37 7 55273030 55273030 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EGFR-44910 NM_005228 exon28 c.C3353T p.A1118V ACCCCGCGCCCAG . 162 6 119 0 . 3 2 1 0 0 MLXIPL 51085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 73008706 73008709 + Frame_Shift_Del DEL CAAA CAAA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CAAA CAAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLXIPL-91 NM_032951 exon16 c.2335_2338del p.779_780del AGGACTCAAACAG . 61 29 61 0 . 0 0 0 0 0 GTF2IRD2B 389524 bcgsc.ca 37 7 74538966 74538966 + Missense_Mutation SNP C C T rs2539083 bycluster;byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GTF2IRD2B-45 NM_001003795 exon5 c.C388T p.P130S ATGGTGCCTGTTC . 1350 30 1243 1 C|0.500;T|0.500 9 9 0 0 0 DTX2 113878 broad.mit.edu 37 7 76111983 76111983 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DTX2-524 NM_001102596 exon2 c.G427A p.V143M CAGCTCGTGGACT . 506 14 362 0 . 3 3 0 0 0 CCDC146 57639 broad.mit.edu 37 7 76888378 76888378 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CCDC146-70 NM_020879 exon7 c.751delA p.K251fs ACACGCAAAAAAG . 104 10 95 0 . 0 0 0 0 0 KIAA1324L 222223 hgsc.bcm.edu;broad.mit.edu 37 7 86556094 86556096 + In_Frame_Del DEL AAG AAG - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 AAG AAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIAA1324L-97 NM_001142749 exon9 c.1226_1228del p.409_410del GATGGCAAGAAGA . 154 12 86 0 . 0 0 0 0 0 DBF4 10926 hgsc.bcm.edu 37 7 87514295 87514295 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DBF4-253 NM_006716 exon3 c.G221A p.R74Q TCTAGCGAGTTGA . 70 4 43 0 . 0 0 0 0 0 ZNF804B 219578 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 88964603 88964603 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF804B-101 NM_181646 exon4 c.A2307G p.I769M TGATATAACAAAG . 273 22 215 0 . 0 0 0 0 0 AKAP9 10142 broad.mit.edu 37 7 91659279 91659279 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AKAP9-755 NM_005751 exon15 c.4219delA p.K1407fs TGTGTGAAAAAGA . 186 9 106 0 . 0 0 0 0 0 AP4M1 9179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99701292 99701292 + Missense_Mutation SNP G G A rs201065427 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AP4M1-90 NM_004722 exon6 c.G520A p.V174I CGCCCCGTCCTGT . 96 44 90 0 G|0.999;A|0.000 20 6 14 0 0 NYAP1 222950 broad.mit.edu 37 7 100086933 100086933 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_173564 exon4 c.G1589T p.C530F GCGGCTGCCTGGC . 82 8 22 0 . 1 1 0 0 0 AP1S1 1174 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100802405 100802405 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AP1S1-226 NM_001283 exon4 c.357delG p.M119fs TTTGATGGGGGGG . 162 76 133 0 . 0 0 0 0 0 PLOD3 8985 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100853911 100853911 + Missense_Mutation SNP G G A rs75592752 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PLOD3-92 NM_001084 exon13 c.C1402T p.R468W CACCCCGGATCAC . 132 57 114 0 A|0.000;C|0.010;G|0.990 197 82 115 0 0 PRKRIP1 79706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 102038071 102038071 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRKRIP1-91 NM_024653 exon2 c.A131G p.K44R AGGACAAAGCAGT . 169 83 138 0 . 2 2 0 0 0 ALKBH4 54784 bcgsc.ca 37 7 102098305 102098305 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ALKBH4-90 NM_017621 exon3 c.C445T p.R149W CGGGCCGGAAGCC . 76 23 38 1 . 14 8 6 0 0 PSMC2 5701 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 103006564 103006564 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PSMC2-90 NM_002803 exon9 c.798delA p.T266fs CAGAACAAAAAAA . 78 34 52 0 . 0 0 0 0 0 MLL5 55904 ucsc.edu;bcgsc.ca 37 7 104717504 104717504 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MLL5-93 NM_018682 exon9 c.A863G p.N288S AAGCAAATAACAA . 350 151 222 3 . 14 5 9 0 0 SRPK2 6733 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 104767476 104767479 + Frame_Shift_Del DEL CAAA CAAA - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CAAA CAAA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SRPK2-805 NM_182692 exon14 c.1783_1786del p.595_596del GTGGTTCAAACAA . 166 62 161 0 . 0 0 0 0 0 BCAP29 55973 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 107253834 107253834 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BCAP29-136 NM_018844 exon7 c.C647T p.S216L GACTTTCGAAAGA . 232 101 208 1 . 72 39 33 0 0 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107820770 107820770 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NRCAM-156 NM_001037132 exon22 c.G2748A p.P916P TAGCCCCGGCAAC . 187 100 129 0 . 35 24 11 0 0 WNT16 51384 broad.mit.edu;bcgsc.ca 37 7 120971850 120971850 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . WNT16-1011 NM_057168 exon3 c.C465T p.N155N GCAGAACGGCGGC . 245 11 175 0 . 0 0 0 0 0 SMO 6608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 128843243 128843243 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SMO-2451 NM_005631 exon2 c.G350A p.R117H CCCCCCGCTGCTG . 120 55 79 0 . 1 0 1 0 0 TMEM209 84928 broad.mit.edu;bcgsc.ca 37 7 129832631 129832631 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TMEM209-92 NM_032842 exon6 c.G606A p.P202P AGGGTACGGAGAA . 207 8 149 0 . 18 18 0 0 0 AKR1D1 6718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 137761290 137761290 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AKR1D1-91 NM_001190907 exon1 c.G26A p.R9H GTCACCGCATACC . 165 87 148 0 . 0 0 0 0 0 JHDM1D 80853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139796487 139796487 + Missense_Mutation SNP T T A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . JHDM1D-91 NM_030647 exon17 c.A2242T p.T748S AACACGTGGAATA . 192 75 155 0 . 1 1 0 0 0 ZYX 7791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143087734 143087734 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZYX-90 NM_003461 exon10 c.G1678A p.V560M GGTCACGTGCTCT . 180 17 165 0 . 198 174 24 0 0 OR2A14 135941 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143826996 143826996 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR2A14-90 NM_001001659 exon1 c.G791A p.R264H AGTCCCGCCATCC . 224 85 187 1 . 0 0 0 0 0 OR2A7 401427 hgsc.bcm.edu;broad.mit.edu 37 7 143955878 143955878 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . OR2A7-23 NM_001005328 exon1 c.C844A p.P282T GCATGGGATTAAA . 433 23 469 0 . 1 1 0 0 0 NOBOX 135935 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 144096190 144096190 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NOBOX-69 NM_001080413 exon8 c.1322delC p.P441fs AAGAGTGGGGGGG . 89 49 69 0 . 0 0 0 0 0 SSPO 23145 broad.mit.edu 37 7 149474770 149474770 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_198455 exon5 c.G569A p.R190H ACCAGCGTCCCTC . 73 3 37 0 . 0 0 0 0 0 NOS3 4846 hgsc.bcm.edu;mdanderson.org 37 7 150706627 150706627 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NOS3-1011 NM_000603 exon20 c.G2466A p.A822A GCCGGCGCCCACT . 85 41 10 0 . 18 17 1 0 0 ABCF2 10061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150920935 150920935 + Missense_Mutation SNP G G A rs138611892 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ABCF2-90 NM_005692 exon5 c.C551T p.A184V CACTCCGCTGTGG . 95 40 67 0 G|1.000;A|0.000 0 0 0 0 0 RNF32 140545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 156469120 156469120 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RNF32-226 NM_001184996 exon9 c.G860A p.R287H CTCTGCGCCGGGA . 176 94 57 0 . 9 3 6 0 0 ANGPT2 285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 6371316 6371316 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ANGPT2-91 NM_001147 exon7 c.C1082T p.S361L AGTTGCGAAACAA . 56 45 86 0 . 7 7 0 0 0 CLDN23 137075 hgsc.bcm.edu 37 8 8560536 8560536 + Missense_Mutation SNP G G A rs12548737 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_194284 exon1 c.G628A p.V210M ATCCAAGTGGAGT . 6 6 0 0 G|0.907;A|0.093 2 0 2 0 0 PDLIM2 64236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 22447189 22447189 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PDLIM2-90 NM_021630 exon8 c.G1448A p.R483Q AGGGACGGGCGGC . 183 152 295 2 . 30 1 29 0 0 CDCA2 157313 bcgsc.ca 37 8 25365209 25365209 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CDCA2-90 NM_152562 exon15 c.G3027T p.L1009L CTCTCTGACTGCC . 60 4 76 0 . 7 7 0 0 0 CHRNA2 1135 bcgsc.ca 37 8 27328511 27328511 + Missense_Mutation SNP G G A rs2472553 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CHRNA2-91 NM_000742 exon2 c.C65T p.T22I GCTGGGGTCAGAA . 209 8 245 0 G|0.819;A|0.181 0 0 0 0 0 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 35608159 35608159 + Silent SNP G G A rs145027081 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UNC5D-96 NM_080872 exon13 c.G1995A p.A665A CTTTGCGTGTCAT . 186 145 248 0 G|1.000;C|0.000 0 0 0 0 0 BRF2 55290 broad.mit.edu;bcgsc.ca 37 8 37702689 37702689 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BRF2-90 NM_018310 exon4 c.C579T p.Y193Y TTCCACGTATTTG . 147 8 234 1 . 10 10 0 0 0 BAG4 9530 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 38067995 38067995 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BAG4-228 NM_004874 exon5 c.1358delA p.E453fs AATTAGAAAAAAA . 54 29 74 0 . 0 0 0 0 0 WHSC1L1 54904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 38162210 38162210 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . WHSC1L1-658 NM_023034 exon14 c.G2506A p.G836R TGCTTCCGGCCGC . 57 45 76 0 . 1 0 1 0 0 HOOK3 84376 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 42823193 42823193 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HOOK3-154 NM_032410 exon11 c.G958C p.V320L GGTCAAGTAGAAT . 153 27 258 0 . 4 4 0 0 0 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 61743055 61743055 + Missense_Mutation SNP G G A rs190548814 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CHD7-141 NM_017780 exon15 c.G3697A p.G1233S AAAGGCGGTGGTC . 115 33 186 0 G|0.999;A|0.001 0 0 0 0 0 BHLHE22 27319 hgsc.bcm.edu 37 8 65493532 65493532 + Missense_Mutation SNP T T A rs62519835 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . BHLHE22-90 NM_152414 exon1 c.T185A p.L62Q CGCCCCTGGGCTG . 8 8 0 0 T|0.935;A|0.065 0 0 0 0 0 TRIM55 84675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 67049359 67049359 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIM55-230 NM_184086 exon4 c.C537T p.L179L CATCCTCGTGGGC . 92 19 127 0 . 0 0 0 0 0 CA3 761 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 86354416 86354416 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CA3-514 NM_005181 exon3 c.C347T p.A116V ATGCAGCGGAGGT . 114 15 91 0 . 0 0 0 0 0 POP1 10940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 99146235 99146235 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . POP1-154 NM_001145860 exon6 c.C794T p.A265V TAAAGGCGCTTTC . 140 66 124 0 . 1 0 1 0 0 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 103289349 103289349 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UBR5-761 NM_015902 exon45 c.6360delA p.K2120fs CCCTTCTTTTTTT . 55 25 45 0 . 0 0 0 0 0 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 103297999 103297999 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UBR5-761 NM_015902 exon39 c.G5226A p.A1742A CAAACCCGCTGAA . 75 33 63 0 . 2 0 2 0 0 ZFPM2 23414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 106813889 106813889 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZFPM2-139 NM_012082 exon8 c.C1579T p.R527X CATCGGCGACTGA . 54 27 35 0 . 0 0 0 0 0 TRPS1 7227 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 116616259 116616259 + Missense_Mutation SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRPS1-229 NM_014112 exon4 c.A1937G p.Y646C CTTTCATAGTGAA . 268 15 168 0 . 2 2 0 0 0 COLEC10 10584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 120101975 120101975 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COLEC10-229 NM_006438 exon2 c.C205T p.R69C GTGGGACGCATGG . 270 18 212 0 . 0 0 0 0 0 MAL2 114569 hgsc.bcm.edu 37 8 120220776 120220776 + Splice_Site DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_052886 exon1 c.64+1G>- . CGCCCCGGGGTCA . 14 14 0 0 . 0 0 0 0 0 MTBP 27085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 121458716 121458716 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MTBP-228 NM_022045 exon2 c.T162C p.I54I AAGCATTAGTGCT . 74 10 55 0 . 2 2 0 0 0 FER1L6 654463 ucsc.edu;bcgsc.ca 37 8 125015418 125015418 + Missense_Mutation SNP A A G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FER1L6-100 NM_001039112 exon13 c.A1531G p.N511D TTTGGAAACCTGA . 408 199 343 2 . 0 0 0 0 0 TG 7038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133913766 133913766 + Missense_Mutation SNP C C T rs201453011 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TG-145 NM_003235 exon16 c.C3602T p.T1201M CTGGGACGCGCGT . 210 106 196 0 C|0.999;T|0.001 0 0 0 0 0 FAM135B 51059 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139164439 139164439 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FAM135B-31 NM_015912 exon13 c.G2279A p.R760Q ACCTCCCGCTCAT . 62 15 72 1 . 0 0 0 0 0 TRAPPC9 83696 broad.mit.edu;bcgsc.ca 37 8 140898200 140898200 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRAPPC9-228 NM_031466 exon21 c.G3272A p.R1091H CCACTGCGCTTCA . 331 14 472 0 . 0 0 0 0 0 CYP11B1 1584 broad.mit.edu 37 8 143960582 143960582 + Silent SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CYP11B1-94 NM_000497 exon2 c.C261G p.G87G CACCATGCCTGCT . 115 4 197 0 . 4 4 0 0 0 GRINA 2907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145066998 145066998 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GRINA-90 NM_001009184 exon7 c.G1105A p.A369T GGCCGCGCCAAGG . 115 89 144 1 . 407 3 403 1 0 ZNF251 90987 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145947714 145947714 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF251-68 NM_138367 exon5 c.G1331A p.R444Q GAACTCCGACGAA . 70 63 97 1 . 9 1 8 0 0 WASH1 100287171 bcgsc.ca 37 9 14909 14909 + Missense_Mutation SNP C C G rs2974795 bycluster;by2hit2allele;byhapmap TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_182905 exon11 c.G1296C p.E432D GGGCCCCTCACCA . 457 40 611 1 . 230 230 0 0 0 C9orf66 157983 hgsc.bcm.edu 37 9 214719 214719 + Silent SNP C C T rs115610637 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . C9orf66-514 NM_152569 exon1 c.G678A p.A226A CAGTTCCGCGCTG . 6 4 0 0 C|0.983;T|0.017 0 0 0 0 0 SMARCA2 6595 hgsc.bcm.edu 37 9 2039777 2039791 + In_Frame_Del DEL CAGCAGCAGCAGCAG CAGCAGCAGCAGCAG - rs113070757 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CAGCAGCAGCAGCAG CAGCAGCAGCAGCAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SMARCA2-653 NM_139045 exon4 c.667_681del p.223_227del CAGCAACAGCAGC . 141 48 89 0 -|0.500;CAG|0.500 0 0 0 0 0 RFX3 5991 broad.mit.edu;bcgsc.ca 37 9 3263055 3263055 + Silent SNP A A C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RFX3-93 NM_134428 exon14 c.T1485G p.T495T TCGCAGAGTCTGG . 225 9 206 0 . 1 1 0 0 0 MPDZ 8777 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 13119542 13119542 + Missense_Mutation SNP C C T rs202112833 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MPDZ-231 NM_003829 exon39 c.G5338A p.V1780I TACGAACGTCTTC . 132 61 117 1 . 10 5 5 0 0 FOCAD 54914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 20881923 20881923 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_017794 exon22 c.C2371T p.R791C ATGCCTCGTGGGA . 80 42 58 0 . 13 4 9 0 0 MTAP 4507 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 21854738 21854738 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MTAP-651 NM_002451 exon6 c.C559T p.R187C ATGTTCCGCACCT . 217 42 142 3 . 17 14 3 0 0 TUSC1 286319 hgsc.bcm.edu 37 9 25678122 25678122 + Silent SNP G G C rs72631814 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TUSC1-90 NM_001004125 exon1 c.C198G p.A66A CAGGTCGGCAAAC . 33 16 0 0 G|0.807;C|0.193 12 8 4 0 0 CAAP1 79886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 26842344 26842344 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_024828 exon6 c.G1041A p.A347A TTTAATCGCTCTT . 103 48 93 0 . 13 7 6 0 0 SMU1 55234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33056173 33056173 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SMU1-91 NM_018225 exon9 c.G1060A p.E354K TTGCTTCGTTAAC . 85 41 71 0 . 68 39 29 0 0 KIF24 347240 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 34306345 34306345 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KIF24-22 NM_194313 exon3 c.C718T p.R240C CTCCACGACGTAC . 123 8 86 0 . 0 0 0 0 0 UNC13B 10497 broad.mit.edu 37 9 35399222 35399222 + Missense_Mutation SNP C C T rs140628524 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . UNC13B-157 NM_006377 exon33 c.C3892T p.R1298C CTCTGGCGCGTGG . 473 8 393 1 C|1.000;T|0.000 31 27 3 0 1 RUSC2 9853 hgsc.bcm.edu;bcgsc.ca 37 9 35560687 35560688 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RUSC2-91 NM_014806 exon10 c.4050_4051del p.1350_1351del CCCTGACTCTGTG . 69 31 53 1 . 0 0 0 0 0 CEP78 84131 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 80854984 80854984 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CEP78-69 NM_001098802 exon2 c.G299A p.R100K CGATAAGATACAA . 105 9 91 0 . 3 3 0 0 0 DAPK1 1612 broad.mit.edu;bcgsc.ca 37 9 90321154 90321154 + Silent SNP G G A rs193150601 by1000genomes TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DAPK1-359 NM_004938 exon26 c.G3168A p.A1056A ACGGGCGCTGCAC . 327 15 160 0 G|0.999;A|0.000 2 2 0 0 0 SPTLC1 10558 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 94794822 94794822 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SPTLC1-154 NM_006415 exon15 c.G1347A p.T449T TTCCACCGTGACC . 193 81 193 1 . 106 49 57 0 0 PTCH1 5727 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 98231105 98231105 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PTCH1-3532 NM_000264 exon14 c.2178delC p.P726fs CGTACAGGGGGGC . 184 76 176 0 . 0 0 0 0 0 MSANTD3 91283 broad.mit.edu 37 9 103204598 103204598 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_001198805 exon2 c.G378A p.P126P CCCCCCGGAGGAG . 77 5 40 0 . 19 19 0 0 0 FRRS1L 23732 broad.mit.edu 37 9 111909469 111909469 + Silent SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_014334 exon3 c.A477G p.R159R GCCATATCTAGAA . 146 4 123 0 . 0 0 0 0 0 MUSK 4593 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 113562990 113562990 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MUSK-1379 NM_005592 exon14 c.C2332T p.R778C TATAACCGCTACA . 209 90 169 1 . 0 0 0 0 0 ASTN2 23245 broad.mit.edu 37 9 119625887 119625887 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASTN2-161 NM_014010 exon10 c.G1862A p.R621Q ACCTGCCGGTCAG . 154 5 138 0 . 0 0 0 0 0 DBC1 1620 ucsc.edu;bcgsc.ca 37 9 121929614 121929614 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DBC1-582 NM_014618 exon8 c.G2034A p.Q678Q GTAGGACTGGTTG . 269 97 228 3 . 1 1 0 0 0 PSMD5 5711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 123586958 123586958 + Missense_Mutation SNP C C T rs149552567 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PSMD5-90 NM_005047 exon7 c.G820A p.V274M ACTTCACGAATCC . 64 33 63 0 C|1.000;T|0.000 0 0 0 0 0 DAB2IP 153090 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 124519406 124519406 + Silent SNP C C T rs35510547 byfrequency;alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DAB2IP-91 NM_032552 exon4 c.C393T p.P131P CAAGCCCGTGCAC . 376 165 330 1 C|0.994;G|0.006 0 0 0 0 0 HSPA5 3309 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 127998973 127998973 + Missense_Mutation SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HSPA5-230 NM_005347 exon8 c.G1863T p.K621N CAGTTCCTTCTTC . 140 8 122 0 . 593 570 22 0 1 TTC16 158248 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 130479967 130479967 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TTC16-90 NM_144965 exon4 c.C342T p.A114A CTCGGCCGCCCAG . 197 90 190 1 . 0 0 0 0 0 FPGS 2356 hgsc.bcm.edu 37 9 130565267 130565267 + Missense_Mutation SNP A A G rs10760502 byfrequency TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FPGS-90 NM_004957 exon1 c.A64G p.I22V CGCGGCATAACGA . 6 6 0 0 A|0.235;G|0.765 2 0 2 0 0 PRRC2B 84726 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 134340407 134340407 + Silent SNP C C A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRRC2B-24 NM_013318 exon11 c.C1662A p.P554P AGTGCCCTGGTCT . 293 18 265 0 . 9 9 0 0 0 COL5A1 1289 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 137623934 137623934 + Silent SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL5A1-524 NM_000093 exon9 c.C1350T p.G450G TCGGGGCGAGAAA . 177 68 160 1 . 5 3 2 0 0 COL5A1 1289 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 137716657 137716657 + Missense_Mutation SNP G G A rs199998065 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . COL5A1-524 NM_000093 exon62 c.G4910A p.R1637H CCGCCCGCACCTG . 173 85 114 1 G|0.999;A|0.001 12 7 5 0 0 RNF208 727800 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 140115250 140115250 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_031297 exon1 c.G415A p.E139K GGGGCTCGCCTGC . 104 18 21 0 . 15 12 3 0 0 RNF208 727800 hgsc.bcm.edu;broad.mit.edu 37 9 140115251 140115251 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_031297 exon1 c.C414T p.G138G GGGCTCGCCTGCC . 100 10 18 0 . 22 13 7 2 0 EXD3 54932 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 140243597 140243597 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EXD3-90 NM_017820 exon16 c.C1795A p.L599M TCTGCAGGCCGGG . 91 44 56 1 . 0 0 0 0 0 EXD3 54932 broad.mit.edu 37 9 140262422 140262422 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EXD3-90 NM_017820 exon6 c.C482T p.T161M TTCAACGTCGCGC . 113 5 119 0 . 1 1 0 0 0 ARRDC1 92714 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 140508572 140508572 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ARRDC1-90 NM_152285 exon5 c.G524A p.R175H ATCTCCGCGGCTA . 192 15 156 0 . 99 92 7 0 0 EHMT1 79813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140676778 140676778 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . EHMT1-154 NM_001145527 exon15 c.C2311T p.Q771X GAGCACCAGAATA . 95 43 87 0 . 24 18 6 0 0 ASMTL 8623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 1546767 1546767 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASMTL-62 NM_004192 exon7 c.G757A p.A253T TGCCCGCGTCCCT . 98 82 25 0 . 55 3 52 0 0 PNPLA4 8228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 7890071 7890071 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PNPLA4-130 NM_004650 exon3 c.C249T p.P83P ATAACCGGGCGTT . 242 202 263 1 . 37 1 36 0 0 KAL1 3730 broad.mit.edu;bcgsc.ca 37 X 8538724 8538724 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KAL1-134 NM_000216 exon7 c.C878T p.P293L TTAGCCGGTGCTG . 237 9 321 0 . 0 0 0 0 0 KAL1 3730 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 8553424 8553424 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KAL1-134 NM_000216 exon6 c.G740A p.R247Q TGAACTCGCTCGT . 144 112 164 2 . 0 0 0 0 0 MAP3K15 389840 broad.mit.edu 37 X 19390842 19390842 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAP3K15-335 NM_001001671 exon22 c.G3037A p.A1013T GGATGGCACGGCG . 229 6 323 0 . 19 18 1 0 0 MAGEB1 4112 broad.mit.edu 37 X 30268991 30268991 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAGEB1-130 NM_177415 exon3 c.G381A p.E127E GAGAGAGCCCATT . 141 4 189 0 . 0 0 0 0 0 TSPAN7 7102 hgsc.bcm.edu;bcgsc.ca 37 X 38535027 38535027 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TSPAN7-63 NM_004615 exon5 c.510delC p.I170fs TGGCATCCCCCCC . 170 136 206 1 . 0 0 0 0 0 MED14 9282 broad.mit.edu;bcgsc.ca 37 X 40518765 40518765 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MED14-289 NM_004229 exon27 c.C3779T p.T1260M TGAAGCGTTTGGT . 109 5 109 0 . 32 28 4 0 0 USP9X 8239 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 41075161 41075161 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . USP9X-563 NM_001039591 exon35 c.G5341A p.V1781I GATACCGTAAAGC . 119 9 143 0 . 1 1 0 0 0 SSX5 6758 ucsc.edu;bcgsc.ca 37 X 48053647 48053647 + Silent SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SSX5-90 NM_021015 exon5 c.C321A p.T107T TGGGAGGGTGGCC . 786 631 1273 4 . 0 0 0 0 0 KCND1 3750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48826543 48826543 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KCND1-133 NM_004979 exon1 c.G136A p.V46M CGCTCACGTTCAC . 126 109 225 1 . 2 0 2 0 0 SHROOM4 57477 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 50350688 50350690 + In_Frame_Del DEL CCT CCT - rs143151534 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 CCT CCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SHROOM4-131 NM_020717 exon6 c.3452_3454del p.1151_1152del CCTCTGCCTCCTC . 92 65 106 0 -|0.701;TCC|0.299 0 0 0 0 0 HEPH 9843 broad.mit.edu;bcgsc.ca 37 X 65486456 65486456 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . HEPH-135 NM_138737 exon21 c.G3581A p.R1194Q AGCTACGACGCAA . 240 10 327 0 . 1 1 0 0 0 TEX11 56159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69774510 69774510 + Missense_Mutation SNP T T C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TEX11-178 NM_001003811 exon27 c.A2326G p.T776A CAATTGTTTCAAA . 161 32 246 0 . 0 0 0 0 0 MED12 9968 ucsc.edu;bcgsc.ca 37 X 70356163 70356163 + Silent SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MED12-272 NM_005120 exon37 c.G5058A p.S1686S GATCTCGCCCTGG . 175 143 239 2 . 45 0 45 0 0 CXCR3 2833 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 70836820 70836820 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CXCR3-660 NM_001142797 exon2 c.G643A p.V215M GGGTCACGCGGGC . 171 15 198 0 . 6 6 0 0 0 ZDHHC15 158866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 74636938 74636938 + Silent SNP G G A rs192529997 TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZDHHC15-132 NM_144969 exon10 c.C951T p.N317N ATCCTCGTTGTCT . 100 76 200 0 G|0.998;A|0.002 1 0 1 0 0 ATRX 546 hgsc.bcm.edu 37 X 76938582 76938585 + Frame_Shift_Del DEL TGAT TGAT - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TGAT TGAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATRX-248 NM_000489 exon9 c.2163_2166del p.721_722del AGTCTCTGATTGC . 28 22 39 2 . 0 0 0 0 0 ZNF711 7552 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 84510411 84510413 + In_Frame_Del DEL ATC ATC - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 ATC ATC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZNF711-134 NM_021998 exon4 c.226_228del p.76_76del CCTGATATCATCA . 285 47 396 0 . 0 0 0 0 0 PCDH11X 27328 hgsc.bcm.edu;bcgsc.ca 37 X 91132408 91132408 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDH11X-193 NM_001168363 exon2 c.C1169T p.A390V AGGATGCGGACCA . 313 261 413 2 . 0 0 0 0 0 SRPX2 27286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 99905848 99905848 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SRPX2-132 NM_014467 exon3 c.C149T p.A50V CTCCTGCCCTGGA . 89 79 118 0 . 0 0 0 0 0 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 109695052 109695052 + Missense_Mutation SNP G G C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . RGAG1-132 NM_020769 exon3 c.G1207C p.V403L CCACCAGTAAGAG . 98 6 177 0 . 0 0 0 0 0 SLITRK4 139065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 142717897 142717897 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SLITRK4-193 NM_001184750 exon2 c.C1028T p.P343L GGTGCCGGGCAAG . 212 177 272 1 . 0 0 0 0 0 FMR1NB 158521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 147090160 147090160 + Missense_Mutation SNP G G T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FMR1NB-131 NM_152578 exon4 c.G561T p.M187I GCAAATGTTTGGG . 90 75 129 0 . 0 0 0 0 0 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 147733548 147733548 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . AFF2-135 NM_002025 exon2 c.76delA p.K26fs GCACTTAAAAAAA . 277 157 315 0 . 0 0 0 0 0 MAGEA11 4110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148797592 148797592 + Missense_Mutation SNP C C T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MAGEA11-132 NM_005366 exon5 c.C446T p.A149V AGGCTGCCTTCTT . 198 163 301 0 . 0 0 0 0 0 CD99L2 83692 broad.mit.edu 37 X 149999704 149999704 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . CD99L2-195 NM_001242614 exon2 c.C130T p.Q44X ACTCACGCTTTAC . 25 3 47 0 . 0 0 0 0 0 ATP2B3 492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152815531 152815531 + Missense_Mutation SNP G G A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ATP2B3-109 NM_001001344 exon10 c.G1610A p.R537H TCCCACGCCAGGT . 102 86 151 0 . 25 0 24 1 0 GDI1 2664 broad.mit.edu;bcgsc.ca 37 X 153669455 153669455 + Silent SNP C C A rs201655775 alternate_allele TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . GDI1-90 NM_001493 exon7 c.C732A p.I244I TGCCATCTATGGG . 66 9 125 0 . 6 4 2 0 0 MEN1 4221 hgsc.bcm.edu;broad.mit.edu 37 11 64572092 64572093 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . MEN1-3017 NM_130803 exon10 c.1562_1563insC p.R521fs GGCTTCCGGGGGG . 33 16 13 0 . 0 0 0 0 0 NEUROD4 58158 hgsc.bcm.edu;broad.mit.edu 37 12 55421127 55421128 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . NEUROD4-94 NM_021191 exon2 c.904_905insC p.T302fs GCTGGTACCCCCC . 161 15 118 0 . 0 0 0 0 0 ZDHHC17 23390 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 77222254 77222255 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . . NM_015336 exon10 c.1125_1126insT p.F375fs GTGGTTCTTCTGG . 108 41 114 0 . 0 0 0 0 0 ZFYVE19 84936 broad.mit.edu;bcgsc.ca 37 15 41106184 41106185 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ZFYVE19-91 NM_001077268 exon10 c.1253_1254insC p.L418fs AGGAGCTCCCCTG . 72 8 156 0 . 0 0 0 0 0 SIPA1L3 23094 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38609984 38609985 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . SIPA1L3-91 NM_015073 exon9 c.2330_2331insC p.G777fs CTTTCGGCCCCCC . 85 35 86 0 . 0 0 0 0 0 PRR12 57479 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50098807 50098808 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PRR12-70 NM_020719 exon4 c.1215_1216insC p.R405fs CACCAGGCCCCCC . 56 18 43 0 . 0 0 0 0 0 ASXL2 55252 hgsc.bcm.edu;bcgsc.ca 37 2 25966872 25966873 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ASXL2-23 NM_018263 exon12 c.2334_2335insC p.P778fs AGGCACTGGGGGG . 60 43 69 1 . 0 0 0 0 0 TNS1 7145 hgsc.bcm.edu 37 2 218712886 218712887 + In_Frame_Ins INS - - GCT novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TNS1-156 NM_022648 exon17 c.1979_1980insAGC p.P660delinsQP GGGCGAGGCTGCT . 66 37 35 0 . 0 0 0 0 0 KRTAP10-6 386674 broad.mit.edu 37 21 46012219 46012220 + In_Frame_Ins INS - - GGGGCGCAGCAGCTG novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KRTAP10-6-90 NM_198688 exon1 c.147_148insCAGCTGCTGCGCCCC p.P49delinsPSCCAP GGGGGCCGGGGCG . 84 7 34 0 . 0 0 0 0 0 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 79366741 79366742 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . FRAS1-68 NM_025074 exon42 c.5731_5732insA p.E1911fs GTCCTGGAAAACT . 108 13 125 0 . 0 0 0 0 0 DAB2 1601 hgsc.bcm.edu;bcgsc.ca 37 5 39390566 39390567 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . DAB2-227 NM_001343 exon5 c.442_443insT p.A148fs TTATGGCAAAAAA . 122 37 93 1 . 0 0 0 0 0 PCDHA13 56136 broad.mit.edu 37 5 140263345 140263346 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . PCDHA13-75 NM_031865 exon1 c.1492_1493insG p.R498fs GAGCGGCGGGTGG . 513 9 96 0 . 0 0 0 0 0 TRIM41 90933 hgsc.bcm.edu;bcgsc.ca 37 5 180651181 180651182 + In_Frame_Ins INS - - GGA novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . TRIM41-226 NM_033549 exon1 c.182_183insGGA p.R61delinsRE TAGATCGGGAGGA . 208 54 161 0 . 0 0 0 0 0 IQCE 23288 hgsc.bcm.edu;broad.mit.edu 37 7 2641074 2641075 + Splice_Site INS - - A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . IQCE-226 NM_001100390 exon17 c.1561-1->A . TTTCCAGAAAAAA . 82 13 52 0 . 0 0 0 0 0 POM121 9883 broad.mit.edu 37 7 72413723 72413724 + In_Frame_Ins INS - - CTC novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . POM121-226 NM_172020 exon11 c.2396_2397insCTC p.F799delinsFS CTGTCTTCTTCGG . 282 9 119 0 . 0 0 0 0 0 ADAM28 10863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 24167472 24167473 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . ADAM28-228 NM_021777 exon3 c.216_217insA p.L72fs TTATTTGAAAAAA . 129 92 151 0 . 0 0 0 0 0 KNDC1 85442 hgsc.bcm.edu 37 10 135012429 135012430 + Missense_Mutation DNP TT TT AC novel TCGA-OR-A5LJ-01A-11D-A29I-10 TCGA-OR-A5LJ-10A-01D-A29L-10 TT TT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b6c34287-1788-487a-a5e2-0d5e329894ee 096a0d03-997c-4951-9168-94d78bccc493 . KNDC1-229 NM_152643 exon14 c.T2418C p.V806D TGGAGTTGCTTCC . 7 0 2 0 T|0.470;C|0.530 0 0 0 0 0