Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	broad.mit.edu;bcgsc.ca	37	1	6610521	6610521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NOL9-515	NM_024654	exon2	c.C551A	p.P184H	TTCTCAGGCTGTG	.	84	6	128	1	.	1	1	0	0	0
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	86	9	91	1	.	0	0	0	0	0
ARHGEF19	128272	bcgsc.ca	37	1	16534646	16534646	+	Missense_Mutation	SNP	C	C	G	rs221058	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ARHGEF19-229	NM_153213	exon3	c.G487C	p.G163R	CCTGGCCAGGCTC	.	148	5	164	0	C|0.794;G|0.206	0	0	0	0	0
PLA2G2C	391013	bcgsc.ca	37	1	20501582	20501582	+	Nonsense_Mutation	SNP	G	G	A	rs12139100	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLA2G2C-68	NM_001105572	exon1	c.C106T	p.R36X	CACTTCGCCCCGT	.	188	9	242	2	G|0.802;A|0.198	0	0	0	0	0
VWA5B1	127731	broad.mit.edu	37	1	20669623	20669623	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_001039500	exon16	c.A2363C	p.D788A	ACTGGGACCCCCC	.	111	25	66	2	.	0	0	0	0	0
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20828581	20828581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MUL1-90	NM_024544	exon3	c.A310G	p.N104D	TTCGATTCCACAC	.	130	26	168	0	.	2	1	1	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22182300	22182300	+	Missense_Mutation	SNP	G	G	A	rs151035968	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HSPG2-141	NM_005529	exon45	c.C5681T	p.T1894M	GTGGGCGTGGGGC	.	61	42	30	0	G|1.000;T|0.000	0	0	0	0	0
SEPN1	57190	bcgsc.ca	37	1	26138262	26138262	+	Silent	SNP	T	T	C	rs760597	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEPN1-92	.	.	.	.	CCTGCCTTCAGGG	.	338	12	366	3	T|0.001;G|0.786;C|0.007;A|0.206	5	5	0	0	0
GSTM1	2944	bcgsc.ca	37	1	110233147	110233147	+	Silent	SNP	C	C	T	rs1056806	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GSTM1-44	NM_000561	exon7	c.C528T	p.D176D	CTTGGACGCCTTC	.	196	6	503	5	C|0.862;T|0.138	6	6	0	0	0
CSF1	1435	bcgsc.ca	37	1	110466338	110466338	+	Silent	SNP	C	C	A	rs333970	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CSF1-91	NM_000757	exon6	c.C1095A	p.T365T	TGGTACCGCCTTG	.	126	5	160	0	C|0.554;A|0.446	4	4	0	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144917828	144917828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PDE4DIP-663	NM_001002811	exon7	c.1947delT	p.V649fs	CAGAGCAACAGCT	.	344	7	447	0	.	0	0	0	0	0
HSPA6	3310	bcgsc.ca	37	1	161495885	161495885	+	Silent	SNP	T	T	C	rs404508	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HSPA6-226	NM_002155	exon1	c.T1437C	p.T479T	GGTGACTTTTGAC	.	331	9	452	2	T|0.179;G|0.216;C|0.555;A|0.050	16	2	0	0	14
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175365862	175365862	+	Missense_Mutation	SNP	G	G	A	rs138654492		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TNR-324	NM_003285	exon5	c.C1058T	p.T353M	TATTCCGTCACTG	.	100	13	110	0	G|1.000;A|0.000	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182499457	182499457	+	Missense_Mutation	SNP	C	C	T	rs202037903		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RGSL1-226	NM_001137669	exon12	c.C2204T	p.T735M	TGTTAACGCTCCA	.	74	38	118	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092228	186092228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HMCN1-113	NM_031935	exon81	c.G12375C	p.Q4125H	CCGCCAGCGCGTC	.	103	33	153	0	.	0	0	0	0	0
OR2T12	127064	bcgsc.ca	37	1	248457979	248457979	+	Missense_Mutation	SNP	C	C	A	rs6667171	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR2T12-71	NM_001004692	exon1	c.G902T	p.R301L	AGCCACCGTTTCA	.	252	7	270	3	C|0.242;A|0.758	0	0	0	0	0
OR2M7	391196	bcgsc.ca	37	1	248487638	248487638	+	Missense_Mutation	SNP	A	A	G	rs7555310	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR2M7-70	NM_001004691	exon1	c.T233C	p.V78A	TTGGGTACAGTGG	.	216	9	290	1	A|0.247;G|0.753	0	0	0	0	0
OR2T2	401992	bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	TGCTGCG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR2T2-23	NM_001004136	exon1	c.607_613del	p.203_205del	TATGCCTGCTGCG	.	452	6	493	3	.	0	0	0	0	0
PITRM1	10531	hgsc.bcm.edu	37	10	3214937	3214937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PITRM1-91	NM_001242309	exon1	c.C35T	p.P12L	CACACAGGCCCTG	.	63	50	2	0	.	0	0	0	0	0
MYPN	84665	bcgsc.ca	37	10	69926334	69926334	+	Missense_Mutation	SNP	C	C	G	rs10823148	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYPN-95	NM_032578	exon10	c.C1884G	p.F628L	TTCTTTCCAGGAG	.	95	7	113	1	C|0.625;G|0.374	0	0	0	0	0
SEC31B	25956	bcgsc.ca	37	10	102265847	102265847	+	Missense_Mutation	SNP	A	A	C	rs2295774	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEC31B-91	NM_015490	exon9	c.T994G	p.S332A	TCACAGAGTACAA	.	146	5	152	0	A|0.836;C|0.164	1	1	0	0	0
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	116853707	116853707	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ATRNL1-96	NM_207303	exon1	c.C198A	p.T66T	GAGGACCGGCTCC	.	75	30	30	0	.	0	0	0	0	0
LHPP	64077	hgsc.bcm.edu	37	10	126150523	126150523	+	Missense_Mutation	SNP	C	C	A	rs75426652		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LHPP-90	NM_022126	exon1	c.C92A	p.T31K	GCGGCACGGCCAT	.	7	6	0	0	C|0.919;A|0.081	1	0	1	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219066	134219066	+	Silent	SNP	G	G	C	rs76595411	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	10	6	0	0	G|0.955;C|0.045	10	0	10	0	0
MUC2	4583	broad.mit.edu	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MUC2-90	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC	.	93	7	102	1	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	GGCTGTGGA	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KRTAP5-5-23	NM_001001480	exon1	c.121_129del	p.41_43del	GGCTCCGGCTGTG	.	84	7	5	0	.	0	0	0	0	0
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9101018	9101018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SCUBE2-92	NM_001170690	exon3	c.G295T	p.V99F	CATGGACACAGCC	.	105	9	158	0	.	1	1	0	0	0
ATG2A	23130	hgsc.bcm.edu	37	11	64673875	64673880	+	In_Frame_Del	DEL	GCCCTT	GCCCTT	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	GCCCTT	GCCCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ATG2A-69	NM_015104	exon21	c.3109_3114del	p.1037_1038del	GCCCTGGCCCTTG	.	33	21	5	1	.	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	99942451	99942451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNTN5-366	NM_001243270	exon11	c.G1314T	p.M438I	TGAGATGGTTAAT	.	84	12	85	0	.	0	0	0	0	0
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121490527	121490527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SORL1-228	NM_003105	exon43	c.C5790G	p.D1930E	CCCGGACAGCAGG	.	147	40	201	0	.	0	0	0	0	0
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123848074	123848074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR10S1-70	NM_001004474	exon1	c.G325C	p.E109Q	AGCCCTCAAAGGA	.	103	12	140	0	.	0	0	0	0	0
ABCD2	225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40012643	40012643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ABCD2-95	NM_005164	exon1	c.C775A	p.L259I	CTGCTAGTAGGGT	.	259	85	192	1	.	0	0	0	0	0
NDUFA12	55967	bcgsc.ca	37	12	95387985	95387985	+	Missense_Mutation	SNP	G	G	T	rs199506466	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NDUFA12-90	NM_018838	exon3	c.C218A	p.T73K	CAGAATGTGTTTT	.	79	5	65	0	G|1.000;A|0.000	160	160	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800603	111800603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FAM109A-90	NM_001177996	exon4	c.G668A	p.R223H	GCCCGGCGGCGAG	.	21	13	0	0	.	2	2	0	0	0
TRAFD1	10906	bcgsc.ca	37	12	112590550	112590550	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRAFD1-90	NM_001143906	exon12	c.C1704G	p.S568S	GCCTTCCAAGCAA	.	109	5	84	0	.	0	0	0	0	0
TMEM132C	92293	bcgsc.ca	37	12	129190266	129190266	+	Missense_Mutation	SNP	G	G	A	rs112818862	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TMEM132C-68	NM_001136103	exon9	c.G2753A	p.R918Q	CTCCGCGGGGCCT	.	97	4	93	1	A|0.013;C|0.000;G|0.987	2	2	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	34	14	0	0	T|0.868;C|0.132	1	1	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	88	6	110	1	.	13	13	0	0	0
TMCO3	55002	bcgsc.ca	37	13	114156093	114156093	+	Silent	SNP	C	C	T	rs2260080	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TMCO3-90	NM_017905	exon5	c.C843T	p.S281S	GCTGTCCTTGCCT	.	74	5	106	0	C|0.772;T|0.228	1	1	0	0	0
ACIN1	22985	hgsc.bcm.edu	37	14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	rs80007670	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ACIN1-156	NM_001164814	exon6	c.G1925A	p.R642H	CGTGAACGTGACC	.	148	8	202	0	C|0.994;T|0.006	0	0	0	0	0
C14orf23	387978	broad.mit.edu	37	14	29261305	29261305	+	RNA	DEL	A	A	-	rs200251419	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	C14orf23-23	.	.	.	.	AGCACTAAAAAAA	.	102	27	115	3	-|0.667;AAC|0.333	0	0	0	0	0
DTD2	112487	broad.mit.edu	37	14	31926599	31926599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_080664	exon1	c.A1G	p.M1V	CAGCCATGGCTTA	.	171	11	22	0	.	1	1	0	0	0
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33149251	33149251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FMN1-23	NM_001103184	exon13	c.C3224A	p.P1075H	TTGAAAGGCTGGA	.	79	15	126	0	.	0	0	0	0	0
PATL2	197135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44964347	44964347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_001145112	exon7	c.G523T	p.A175S	TCTTGGCTGGGGG	.	51	7	69	0	.	0	0	0	0	0
ADAMTS7	11173	ucsc.edu	37	15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	rs3825807	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADAMTS7-226	NM_014272	exon4	c.T640C	p.S214P	GTCGAGACTCCAG	.	34	8	10	0	A|0.704;G|0.296	0	0	0	0	0
SLC28A1	9154	bcgsc.ca	37	15	85432030	85432030	+	Silent	SNP	T	T	C	rs17222302	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC28A1-93	NM_201651	exon4	c.T124C	p.L42L	AGTGACTTGAGCC	.	75	4	62	0	T|0.991;C|0.009	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	5	5	0	0	T|0.007;C|0.993	0	0	0	0	0
MYLK3	91807	broad.mit.edu	37	16	46744683	46744683	+	Silent	SNP	T	T	G	rs200273306		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYLK3-374	NM_182493	exon11	c.A2133C	p.P711P	TAGAAATGGGGAC	.	58	9	73	8	T|0.996;G|0.004	0	0	0	0	0
WWP2	11060	bcgsc.ca	37	16	69963355	69963355	+	Silent	SNP	G	G	A	rs1566452	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	WWP2-658	NM_001270454	exon12	c.G1239A	p.K413K	AGAGAAGAGACAG	.	224	8	265	1	A|0.812;C|0.000	1	1	0	0	0
MTSS1L	92154	hgsc.bcm.edu	37	16	70698094	70698094	+	Missense_Mutation	SNP	G	G	A	rs77173170	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MTSS1L-68	NM_138383	exon15	c.C1730T	p.A577V	GACAGGGCGCGGC	.	9	9	1	0	G|0.995;A|0.005	7	0	7	0	0
PLCG2	5336	bcgsc.ca	37	16	81929527	81929527	+	Silent	SNP	C	C	G	rs13333716	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLCG2-892	NM_002661	exon13	c.C1188G	p.T396T	TGTTACCTCGAGG	.	137	5	135	0	C|0.936;G|0.064	0	0	0	0	0
DNAAF1	123872	bcgsc.ca	37	16	84203612	84203612	+	Missense_Mutation	SNP	A	A	G	rs17856705	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	DNAAF1-73	NM_178452	exon8	c.A1178G	p.K393R	CGGAAAAGCCAAG	.	113	5	149	0	A|0.639;G|0.361	0	0	0	0	0
JPH3	57338	hgsc.bcm.edu	37	16	87678021	87678021	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	JPH3-92	NM_020655	exon2	c.C540T	p.D180D	TCCCGACGCCTCT	.	46	10	4	0	.	0	0	0	0	0
MPRIP	23164	hgsc.bcm.edu	37	17	17062002	17062002	+	Missense_Mutation	SNP	C	C	T	rs190974068		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MPRIP-90	NM_015134	exon14	c.C1732T	p.P578S	GCGGAGCCTGGGG	.	18	6	0	0	C|0.999;T|0.000	4	4	0	0	0
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	19582079	19582079	+	Missense_Mutation	SNP	G	G	A	rs201004962		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC47A2-90	NM_152908	exon17	c.C1729T	p.R577C	CACGGCGGATGAC	.	132	8	139	0	.	0	0	0	0	0
ENPP7	339221	bcgsc.ca	37	17	77709339	77709339	+	Silent	SNP	C	C	G	rs11657217	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ENPP7-92	NM_178543	exon3	c.C897G	p.A299A	CGATGCCCTCAAG	.	128	5	169	0	C|0.673;G|0.327	0	0	0	0	0
OGFOD3	79701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80361861	80361861	+	Silent	SNP	C	C	T	rs200973304		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_175902	exon7	c.G651A	p.T217T	CGCTTCCGTGCTG	.	105	8	62	0	C|0.999;T|0.000	42	32	10	0	0
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	7013829	7013829	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LAMA1-149	NM_005559	exon23	c.G3348A	p.G1116G	GCAGGCCCCGGTT	.	174	13	214	0	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	rs2271733	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RAX-90	NM_013435	exon1	c.C132A	p.D44E	CCCGTCGTCCTTG	.	4	4	0	0	G|0.801;T|0.199	0	0	0	0	0
CNDP2	55748	bcgsc.ca	37	18	72178161	72178161	+	Silent	SNP	T	T	C	rs2278159	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNDP2-93	NM_018235	exon6	c.T570C	p.Y190Y	GGACTATGTCTGC	.	195	8	225	1	T|0.825;C|0.175	6	6	0	0	0
CNDP1	84735	bcgsc.ca	37	18	72234635	72234635	+	Silent	SNP	C	C	T	rs12960862	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNDP1-90	NM_032649	exon6	c.C723T	p.Y241Y	CACTTACGGAACC	.	177	8	165	0	C|0.481;T|0.519	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753067	76753067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SALL3-155	NM_171999	exon2	c.C1076G	p.P359R	GCCTGCCAAGTCC	.	40	10	2	0	.	0	0	0	0	0
MADCAM1	8174	ucsc.edu;bcgsc.ca	37	19	501762	501762	+	Missense_Mutation	SNP	A	A	C	rs200007467		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MADCAM1-90	NM_130760	exon4	c.A761C	p.Q254P	CCTCCCAGGAGCC	.	160	24	58	0	.	0	0	0	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	621561	621561	+	Missense_Mutation	SNP	C	C	A	rs10421235		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	POLRMT-92	NM_005035	exon10	c.G2137T	p.V713L	CCAGCACGCGCCC	.	20	12	0	0	C|0.918;A|0.082	2	2	0	0	0
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7689283	7689283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	XAB2-272	NM_020196	exon7	c.G871A	p.D291N	TGAAGTCCCGCAC	.	141	9	109	0	.	11	9	2	0	0
KLF1	10661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12996235	12996235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KLF1-90	NM_006563	exon2	c.C809T	p.S270L	GCCCACGAACGTC	.	142	21	10	0	.	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	rs10425488	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OCEL1-68	NM_024578	exon2	c.G125T	p.R42L	GGACCCGCCCATC	.	13	9	0	0	G|0.934;T|0.066	5	3	2	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	9	9	0	0	C|0.617;T|0.383	12	0	12	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	12	6	0	0	C|0.883;G|0.117	3	1	2	0	0
LGI4	163175	hgsc.bcm.edu	37	19	35622449	35622449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LGI4-91	NM_139284	exon6	c.G469T	p.G157W	GGTTCCCGCGGAG	.	93	15	7	0	.	0	0	0	0	0
CLASRP	11129	hgsc.bcm.edu	37	19	45567668	45567668	+	Missense_Mutation	SNP	C	C	A	rs71352251		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CLASRP-154	NM_007056	exon13	c.C1189A	p.R397S	AGCTCTCGCTCCA	.	36	20	0	0	C|0.996;A|0.004	5	2	3	0	0
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45815122	45815122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CKM-91	NM_001824	exon5	c.A538G	p.T180A	TCTCCGTCATGCT	.	119	19	94	0	.	0	0	0	0	0
PPP1R13L	10848	hgsc.bcm.edu	37	19	45900158	45900158	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPP1R13L-91	NM_001142502	exon4	c.G357C	p.S119S	CGGCGACGACGGC	.	6	4	0	0	.	1	0	1	0	0
ARHGAP35	2909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47492807	47492807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_004491	exon4	c.A3911G	p.N1304S	ACCACAACCTGGA	.	154	21	138	1	.	0	0	0	0	0
PRR24	255783	hgsc.bcm.edu	37	19	47778221	47778221	+	Silent	SNP	A	A	C	rs10407367	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_178511	exon1	c.A45C	p.G15G	CCCCGGAGGCGCG	.	4	4	0	0	A|0.415;C|0.585	2	0	2	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	96	12	80	0	A|0.998;G|0.002	0	0	0	0	0
NR1H2	7376	hgsc.bcm.edu;ucsc.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	125	7	64	0	G|0.903;A|0.097	0	0	0	0	0
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53959137	53959137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF761-91	NM_001008401	exon7	c.G1376A	p.R459H	GTAGACGTCATAC	.	131	24	72	0	.	2	2	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	8	4	0	0	A|0.808;G|0.192	2	1	1	0	0
ZNF628	89887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55995158	55995158	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF628-22	NM_033113	exon3	c.G2598A	p.Q866Q	GGTCCAGCTCCAG	.	202	68	114	0	.	8	3	5	0	0
EFR3B	22979	broad.mit.edu;bcgsc.ca	37	2	25372574	25372574	+	Silent	SNP	C	C	T	rs189511251	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_014971	exon20	c.C2154T	p.A718A	GCCTGCCGAGGAG	.	118	5	158	0	C|0.996;T|0.004	0	0	0	0	0
PLB1	151056	bcgsc.ca	37	2	28827533	28827533	+	Silent	SNP	C	C	T	rs146023795	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLB1-141	NM_153021	exon41	c.C2868T	p.R956R	CATGCGCGAGCTG	.	119	6	171	0	C|0.993;T|0.007	0	0	0	0	0
ADD2	119	broad.mit.edu	37	2	70918047	70918047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADD2-93	NM_001185055	exon7	c.G768T	p.K256N	GCCCCACTTCATG	.	109	4	109	0	.	0	0	0	0	0
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162820668	162820668	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC4A10-229	NM_001178015	exon22	c.C2886T	p.F962F	GCTCTTCTGGATG	.	33	7	42	0	.	0	0	0	0	0
TMC2	117532	broad.mit.edu;bcgsc.ca	37	20	2582894	2582894	+	Nonsense_Mutation	SNP	C	C	T	rs202171256		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TMC2-93	NM_080751	exon11	c.C1360T	p.R454X	GTTAAGCGATCTC	.	261	10	215	0	C|0.999;T|0.001	0	0	0	0	0
MYLK2	85366	broad.mit.edu;bcgsc.ca	37	20	30418931	30418931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYLK2-760	NM_033118	exon10	c.A1411C	p.I471L	GGGGTGATCACCT	.	198	8	134	0	.	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_001037335	exon9	c.T5462G	p.L1821R	ACGGCCAGGGTGT	.	15	6	0	0	A|0.739;C|0.261	4	3	1	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	.	.	.	.	GCCCCCCTGCTGC	.	78	9	24	0	.	0	0	0	0	0
RTDR1	27156	bcgsc.ca	37	22	23482460	23482460	+	Silent	SNP	A	A	G	rs4822360	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RTDR1-516	NM_014433	exon2	c.T148C	p.L50L	CACACAAGGCCAT	.	95	4	121	0	A|0.436;G|0.564	0	0	0	0	0
CRYBB3	1417	broad.mit.edu;bcgsc.ca	37	22	25597401	25597401	+	Missense_Mutation	SNP	C	C	G	rs147831812	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CRYBB3-90	NM_004076	exon2	c.A38G	p.E13G	CTGCAGCTGGCAA	.	119	6	202	0	C|0.997;G|0.003	0	0	0	0	0
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31667154	31667154	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LIMK2-548	NM_005569	exon12	c.G1350A	p.R450R	CCACCGGGATCTG	.	131	10	152	0	.	1	1	0	0	0
XIRP1	165904	bcgsc.ca	37	3	39230386	39230386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	XIRP1-158	NM_001198621	exon2	c.C551A	p.A184D	CCGCTGGCTGCAG	.	73	4	53	0	.	0	0	0	0	0
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	44285176	44285176	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_001145030	exon2	c.A1178C	p.D393A	TGATGGATCATTT	.	26	8	15	0	.	0	0	0	0	0
GPX1	2876	broad.mit.edu;bcgsc.ca	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GPX1-68	.	.	.	.	TTGCACGGGAAGC	.	167	11	39	0	G|0.333;C|0.667	291	291	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	6	6	0	0	G|0.252;C|0.748	0	0	0	0	0
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97869140	97869140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR5H14-91	NM_001005514	exon1	c.T911C	p.M304T	CAAAAATGTTCAA	.	214	19	154	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	6	5	0	0	T|0.412;A|0.588	0	0	0	0	0
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	140401765	140401765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRIM42-227	NM_152616	exon2	c.C803T	p.S268L	TCCACTCGGATGT	.	244	16	157	0	.	0	0	0	0	0
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PIK3CA-27752	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	179	38	156	0	.	6	6	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959508	183959508	+	Silent	SNP	A	A	C	rs28606531	byfrequency;by1000genomes	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_138345	exon19	c.A3411C	p.P1137P	GGGGCCAGGCCAG	.	23	8	0	0	A|0.927;C|0.073	5	2	3	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	236	96	29	1	.	4	4	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	10	8	0	0	C|1.000;|0.000	6	3	3	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	4	4	0	0	G|0.794;C|0.206	1	0	1	0	0
PHOX2B	8929	broad.mit.edu	37	4	41749416	41749416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PHOX2B-1970	NM_003924	exon2	c.A379C	p.T127P	CCCGAGTGTAGAT	.	57	3	53	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	9	9	0	0	G|0.025;C|0.975	0	0	0	0	0
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73012700	73012700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NPFFR2-92	NM_004885	exon4	c.A740G	p.Q247R	GGTTCCAGTGTGT	.	79	14	68	0	.	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	5	5	0	0	C|0.324;A|0.676	0	0	0	0	0
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94376818	94376818	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GRID2-159	NM_001510	exon11	c.C1551T	p.A517A	GAGAGCCGACATA	.	149	21	123	0	.	0	0	0	0	0
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160275135	160275135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RAPGEF2-637	NM_014247	exon22	c.A4105G	p.T1369A	GAAGAAACCAAGC	.	131	46	86	0	.	3	1	1	1	0
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	5	13845019	13845019	+	Missense_Mutation	SNP	G	G	A	rs146087064		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	DNAH5-182	NM_001369	exon32	c.C5198T	p.S1733L	GAGTCCGACGCCT	.	219	10	155	0	G|1.000;A|0.000	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127863580	127863580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FBN2-146	NM_001999	exon4	c.A517T	p.T173S	AATAAGTTCCAAT	.	172	20	131	0	.	0	0	0	0	0
GDF9	2661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132197395	132197395	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GDF9-227	NM_005260	exon2	c.G1251A	p.P417P	ACATGACGGTCTT	.	209	13	133	0	.	0	0	0	0	0
SEC24A	10802	broad.mit.edu	37	5	134022586	134022586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEC24A-68	NM_001252231	exon10	c.T1598A	p.L533Q	ACAATCTGGATTT	.	57	4	29	0	.	0	0	0	0	0
ABLIM3	22885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148624490	148624490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ABLIM3-93	NM_014945	exon16	c.C1398G	p.S466R	CATCAGCCAGACC	.	222	81	178	0	.	5	1	4	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HLA-B-90	NM_005514	exon3	c.603_610del	p.201_204del	CGCGCTCCAGCTT	.	85	0	22	0	.	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65622395	65622395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	EYS-660	NM_001142800	exon16	c.C2623T	p.H875Y	TACAATGCTGATT	.	171	19	165	0	.	0	0	0	0	0
ROS1	6098	broad.mit.edu	37	6	117622297	117622297	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ROS1-1353	NM_002944	exon42	c.G6573A	p.W2191X	TAAATTCCACCTA	.	69	3	52	0	.	0	0	0	0	0
MAP3K5	4217	broad.mit.edu;bcgsc.ca	37	6	136913613	136913613	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MAP3K5-982	NM_005923	exon22	c.A3018G	p.G1006G	TCTTTCTCCGCAG	.	175	7	126	0	.	2	2	0	0	0
PPIL4	85313	hgsc.bcm.edu	37	6	149862718	149862718	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPIL4-90	NM_139126	exon2	c.C75A	p.C25X	ATTCAAGCAGGCT	.	77	4	56	0	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152832157	152832157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SYNE1-607	NM_033071	exon7	c.C412A	p.L138I	AATATAGAATAAT	.	190	23	153	0	.	0	0	0	0	0
MTRF1L	54516	broad.mit.edu;bcgsc.ca	37	6	153315693	153315693	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MTRF1L-90	NM_019041	exon4	c.C642G	p.V214V	AGTATGGACGCGG	.	151	6	112	0	.	1	1	0	0	0
IGF2R	3482	broad.mit.edu;bcgsc.ca	37	6	160450598	160450598	+	Missense_Mutation	SNP	G	G	A	rs199715599		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	IGF2R-118	NM_000876	exon7	c.G793A	p.V265M	AGTTACGTGAGGG	.	136	6	103	0	.	1	1	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	5	4	0	0	G|0.796;C|0.204	0	0	0	0	0
VWDE	221806	bcgsc.ca	37	7	12414725	12414725	+	Nonsense_Mutation	SNP	G	G	A	rs17165936	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	VWDE-68	NM_001135924	exon8	c.C1153T	p.R385X	CATCTCGAGAAAA	.	183	6	134	0	G|0.840;A|0.160	0	0	0	0	0
SP8	221833	broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	39	8	4	0	.	0	0	0	0	0
CHN2	1124	bcgsc.ca	37	7	29407600	29407600	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHN2-229	NM_004067	exon3	c.G141T	p.R47R	TCCTCGGGAGGTC	.	60	4	59	0	.	0	0	0	0	0
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29519803	29519803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHN2-229	NM_001039936	exon1	c.G77A	p.R26H	GGAAACGCCAAGA	.	307	52	220	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	1	0	1	0	0
RBM48	84060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92164285	92164285	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_032120	exon4	c.1017+1G>T	.	AAAGAGGTAAGGT	.	124	13	107	0	.	1	1	0	0	0
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98581870	98581870	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRRAP-923	NM_001244580	exon60	c.G9189C	p.R3063R	AAGTCGGATTCAT	.	204	16	151	0	.	1	1	0	0	0
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	157333452	157333452	+	Missense_Mutation	SNP	C	C	T	rs138836883		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PTPRN2-295	NM_002847	exon23	c.G3004A	p.V1002M	CAGCCACGGCTGT	.	267	20	162	0	C|1.000;T|0.000	11	10	1	0	0
EBF2	64641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25708132	25708132	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	EBF2-26	NM_022659	exon15	c.C1674T	p.S558S	ATTGCCGCTGGAG	.	152	18	209	1	.	1	1	0	0	0
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39634610	39634610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADAM2-227	NM_001464	exon11	c.T962A	p.I321N	TAAGTGATCCCCA	.	84	7	80	0	.	1	0	1	0	0
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42586825	42586825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHRNB3-91	NM_000749	exon5	c.C375A	p.F125L	CCGCTTCGAAGGC	.	106	61	112	0	.	0	0	0	0	0
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	52321748	52321748	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PXDNL-70	NM_144651	exon17	c.C2436T	p.H812H	CAAGTCGTGCTCT	.	26	5	17	0	.	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	4	4	0	0	C|0.434;G|0.566	0	0	0	0	0
ESRP1	54845	bcgsc.ca	37	8	95655596	95655596	+	Silent	SNP	T	T	C	rs72676907	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ESRP1-94	NM_001122827	exon3	c.T327C	p.D109D	TACTGATGGGCAG	.	157	6	156	0	T|0.887;C|0.113	0	0	0	0	0
SMARCA2	6595	bcgsc.ca	37	9	2191309	2191309	+	Missense_Mutation	SNP	C	C	G	rs2296212	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SMARCA2-653	NM_003070	exon33	c.C4638G	p.D1546E	AGATGACAAAGGC	.	170	6	240	0	C|0.831;G|0.169	3	3	0	0	0
KDM4C	23081	bcgsc.ca	37	9	7174673	7174673	+	Missense_Mutation	SNP	G	G	A	rs913588	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KDM4C-228	NM_015061	exon22	c.G3115A	p.V1039I	GACCCTGTATACC	.	122	6	169	2	G|0.609;A|0.391	3	3	0	0	0
SYK	6850	bcgsc.ca	37	9	93640009	93640009	+	Silent	SNP	G	G	A	rs2290887	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SYK-1402	NM_003177	exon10	c.G1338A	p.L446L	GATGCTGGTTATG	.	200	7	258	0	G|0.824;A|0.176	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	10	10	0	0	C|0.917;T|0.083	0	0	0	0	0
PRDM12	59335	bcgsc.ca	37	9	133553993	133553993	+	Silent	SNP	C	C	T	rs7021384	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PRDM12-90	NM_021619	exon4	c.C648T	p.P216P	TGTGCCCGGGCTA	.	168	8	223	1	C|0.650;T|0.350	0	0	0	0	0
PPEF1	5475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18822065	18822065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPEF1-226	NM_006240	exon14	c.C1121T	p.T374M	CAAATACGTGCCG	.	46	8	43	0	.	0	0	0	0	0
FAM45B	55855	broad.mit.edu	37	X	129631540	129631540	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FAM45B-63	.	.	.	.	ATATTCAAAAAAA	.	8	2	7	0	.	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	114	24	72	1	.	1	0	1	0	0
CD24	100133941	bcgsc.ca	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	.	.	.	.	TCCCCTACGTCGG	.	111	37	46	1	.	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGC	p.P81delinsQQQP	TGCGGTGGCTGCT	.	65	14	17	0	.	0	0	0	0	0
MN1	4330	broad.mit.edu	37	22	28194933	28194934	+	In_Frame_Ins	INS	-	-	TGC	rs75719175		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MN1-993	NM_002430	exon1	c.1599_1600insGCA	p.Q533delinsQQ	CTGCTGTTGCTGC	.	63	33	4	0	.	0	0	0	0	0
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	56	14	10	0	.	0	0	0	0	0
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu	37	X	9656179	9656180	+	In_Frame_Ins	INS	-	-	GCG	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TBL1X-131	NM_001139466	exon7	c.480_481insGCG	p.S160delinsSA	AGCCAGTGCGGCG	.	81	28	14	0	.	0	0	0	0	0