Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	8	8	0	0	G|0.061;T|0.939	0	0	0	0	0
CCDC30	728621	bcgsc.ca	37	1	43047057	43047057	+	Silent	SNP	A	A	G	rs12037518	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CCDC30-90	NM_001080850	exon8	c.A1092G	p.E364E	ATTAGAACATGCT	.	172	6	220	1	A|0.811;G|0.189	6	6	0	0	0
CTH	1491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	70904780	70904784	+	Frame_Shift_Del	DEL	ATAGC	ATAGC	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	ATAGC	ATAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CTH-91	NM_001902	exon12	c.1192_1192del	p.398_398del	GTTATTATAGCAC	.	84	33	132	0	.	0	0	0	0	0
GPR88	54112	hgsc.bcm.edu	37	1	101005425	101005425	+	Silent	SNP	G	G	A	rs201200849	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GPR88-90	NM_022049	exon2	c.G903A	p.V301V	ACTGGTGTGGGTG	.	11	10	0	0	G|0.993;A|0.007	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	15	11	2	0	T|0.861;C|0.139	3	0	3	0	0
PLEKHO1	51177	ucsc.edu	37	1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PLEKHO1-226	NM_016274	exon6	c.G733A	p.E245K	CCTTGGGAAAAAA	.	125	2	151	0	.	59	46	13	0	0
CEP350	9857	ucsc.edu;bcgsc.ca	37	1	179956383	179956383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CEP350-26	NM_014810	exon3	c.A82G	p.T28A	GATATAACCACAT	.	34	4	57	0	.	0	0	0	0	0
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183867009	183867009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RGL1-725	NM_015149	exon11	c.G1313T	p.R438L	AGAGGCGGCTGCA	.	119	60	142	0	.	25	4	21	0	0
IKBKE	9641	bcgsc.ca	37	1	206651107	206651107	+	Silent	SNP	G	G	A	rs2297545	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	IKBKE-1061	NM_001193322	exon8	c.G717A	p.T239T	CACCACGGAGAAG	.	123	6	161	0	G|0.745;A|0.255	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	8	7	0	0	T|0.721;G|0.279	9	0	8	1	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399799	228399799	+	Silent	SNP	C	C	T	rs11582369	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon2	c.C315T	p.C105C	CGCGTGCGCCGAG	.	11	11	0	0	C|0.943;T|0.057	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399803	228399803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon2	c.G319C	p.E107Q	TGCGCCGAGCAGG	.	10	10	0	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	8	6	0	0	G|0.841;A|0.159	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	140	4	139	0	.	9	9	0	0	0
ARHGAP22	58504	hgsc.bcm.edu	37	10	49659006	49659006	+	Missense_Mutation	SNP	G	G	A	rs80345791		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ARHGAP22-228	NM_001256024	exon9	c.C1214T	p.P405L	TGCGCGGGCAGGC	.	13	10	0	0	G|0.987;A|0.013	2	0	2	0	0
GLUD1	2746	broad.mit.edu	37	10	88817461	88817461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GLUD1-90	NM_005271	exon11	c.A1481G	p.Q494R	CTGTCTTGGAACT	.	82	4	123	0	.	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	14	14	0	0	C|0.339;G|0.661	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129913821	129913821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MKI67-519	NM_002417	exon7	c.C851A	p.T284N	AGTTGGGTCTCCC	.	69	40	88	0	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	7	6	0	0	C|0.431;G|0.569	21	0	21	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	5	5	1	0	C|0.860;T|0.140	65	2	63	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	100	7	31	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	97	6	29	0	.	0	0	0	0	0
LSP1	4046	broad.mit.edu	37	11	1887806	1887806	+	Missense_Mutation	SNP	T	T	A	rs7938342	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LSP1-90	NM_001242932	exon2	c.T102A	p.H34Q	ACCTCATCCCAGC	.	59	4	65	0	T|0.345;A|0.655	3	3	0	0	0
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22279254	22279254	+	Missense_Mutation	SNP	C	C	T	rs148698633		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ANO5-515	NM_213599	exon14	c.C1361T	p.T454M	TATACACGCGTAT	.	87	42	107	0	C|1.000;T|0.000	6	0	6	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	5	5	0	0	C|0.921;T|0.079	0	0	0	0	0
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6439136	6439136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TNFRSF1A-659	NM_001065	exon9	c.C865G	p.P289A	AACTGGGCACGGG	.	38	14	30	0	.	319	185	134	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	59268001	59268001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LRIG3-229	NM_153377	exon18	c.G2951A	p.S984N	CTGAAGCTCCGTT	.	227	76	181	0	.	14	8	6	0	0
TMCO3	55002	bcgsc.ca	37	13	114152755	114152755	+	Silent	SNP	C	C	T	rs2260218	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TMCO3-90	NM_017905	exon3	c.C543T	p.D181D	GCTTGACGAGATT	.	99	8	129	0	C|0.795;T|0.205	37	37	0	0	0
ATP10A	57194	bcgsc.ca	37	15	25926186	25926186	+	Silent	SNP	G	G	A	rs2076743	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ATP10A-139	NM_024490	exon18	c.C3528T	p.A1176A	GGCGTCGGCCATG	.	216	7	242	4	G|0.329;A|0.671	3	3	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	7	7	1	0	C|0.452;T|0.548	0	0	0	0	0
SOLH	6650	hgsc.bcm.edu	37	16	597453	597453	+	Silent	SNP	C	C	T	rs141612773	by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SOLH-523	NM_005632	exon4	c.C615T	p.P205P	CCTCCCCGGGGAA	.	11	9	0	0	C|0.999;T|0.001	10	3	7	0	0
SPIRE2	84501	bcgsc.ca	37	16	89921057	89921057	+	Missense_Mutation	SNP	A	A	G	rs139065194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SPIRE2-90	NM_032451	exon5	c.A889G	p.M297V	AAGGTCATGGTGA	.	202	19	129	0	A|1.000;G|0.000	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	12	10	1	0	T|0.657;C|0.343	1	0	1	0	0
SMG6	23293	ucsc.edu	37	17	2203570	2203570	+	Silent	SNP	G	G	C	rs150211793	byfrequency;alternate_allele	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SMG6-228	NM_017575	exon2	c.C477G	p.S159S	ACTGGCGGATTCT	.	29	4	42	0	G|1.000;A|0.000	12	12	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274518	39274518	+	Missense_Mutation	SNP	C	C	T	rs9897031		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_033059	exon1	c.G50A	p.R17Q	AGGTCTCGGCCAC	.	167	6	172	0	C|0.308;T|0.692	0	0	0	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	8	6	0	0	G|0.505;A|0.495	0	0	0	0	0
COG1	9382	bcgsc.ca	37	17	71197439	71197439	+	Silent	SNP	C	C	T	rs1551036	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COG1-91	NM_018714	exon7	c.C1473T	p.S491S	GGTCAGCGTGGCA	.	104	6	137	1	C|0.867;N|0.001	18	18	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	5	5	0	0	C|0.390;A|0.610	0	0	0	0	0
ODF3L2	284451	hgsc.bcm.edu	37	19	464080	464080	+	Missense_Mutation	SNP	C	C	T	rs76592524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ODF3L2-68	NM_182577	exon4	c.G634A	p.A212T	TGTTTGCGTCCGG	.	13	7	1	0	C|0.969;T|0.031	4	1	3	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	621561	621561	+	Missense_Mutation	SNP	C	C	A	rs10421235		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	POLRMT-92	NM_005035	exon10	c.G2137T	p.V713L	CCAGCACGCGCCC	.	20	15	0	0	C|0.918;A|0.082	21	10	11	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	6	5	1	0	C|0.766;T|0.234	3	1	2	0	0
ARRDC2	27106	hgsc.bcm.edu	37	19	18112361	18112361	+	Missense_Mutation	SNP	C	C	T	rs113540008		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ARRDC2-91	NM_001025604	exon1	c.C238T	p.R80C	CTGCGGCGTCGGC	.	13	13	0	0	C|0.966;T|0.034	5	0	5	0	0
GPATCH1	55094	bcgsc.ca	37	19	33579128	33579128	+	Silent	SNP	T	T	C	rs7259333	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GPATCH1-91	NM_018025	exon2	c.T162C	p.S54S	CTTTAGTGGAGGT	.	112	6	58	0	T|0.549;C|0.451	4	4	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	10	10	0	0	T|0.545;C|0.455	0	0	0	0	0
IRGC	56269	broad.mit.edu;bcgsc.ca	37	19	44223431	44223431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	IRGC-70	NM_019612	exon2	c.C721T	p.R241C	CACCGGCGCCACG	.	181	9	63	0	.	0	0	0	0	0
SIX5	147912	broad.mit.edu;bcgsc.ca	37	19	46269609	46269609	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SIX5-91	NM_175875	exon2	c.A1608T	p.P536P	GGTACCTGGGGCA	.	81	5	43	0	.	2	2	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	6	0	0	C|0.254;G|0.746	3	3	0	0	0
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49645325	49645325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PPFIA3-226	NM_003660	exon20	c.C2497G	p.L833V	CAGGGCCTACCTT	.	97	6	74	0	.	5	5	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	98	25	34	1	.	42	39	3	0	0
LILRA3	11026	bcgsc.ca	37	19	54804167	54804167	+	Missense_Mutation	SNP	G	G	A	rs11574606	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LILRA3-91	NM_001172654	exon1	c.C7T	p.P3S	GGATGGGGGTCAT	.	177	6	123	0	G|0.907;A|0.093	1	1	0	0	0
ZNF471	57573	broad.mit.edu	37	19	57036436	57036436	+	Missense_Mutation	SNP	G	G	T	rs75422502		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ZNF471-154	NM_020813	exon5	c.G1000T	p.A334S	TCTTTTGCTCGAC	.	94	20	79	10	.	4	2	2	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	276	38	204	1	G|1.000;|0.000	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	6	6	0	0	T|0.543;C|0.457	0	0	0	0	0
RANBP2	5903	broad.mit.edu;bcgsc.ca	37	2	109382319	109382319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RANBP2-675	NM_006267	exon20	c.T5324A	p.F1775Y	GTGGATTTGAAGG	.	299	10	346	0	.	12	12	0	0	0
FOXD4L1	200350	mdanderson.org	37	2	114257443	114257443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FOXD4L1-84	NM_012184	exon1	c.A610C	p.K204Q	CGTTTCAAGCGCC	.	25	12	23	1	.	1	0	1	0	0
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241835134	241835134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	C2orf54-90	NM_001085437	exon1	c.T281C	p.I94T	TCCTCAATCAGTA	.	186	118	196	0	.	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0
OTOR	56914	hgsc.bcm.edu	37	20	16729548	16729548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OTOR-206	NM_020157	exon2	c.A152G	p.N51S	ATTATAATGCCCC	.	48	4	37	0	.	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CST3-91	NM_000099	exon1	c.C12T	p.P4P	GCGCAGGGGCCCG	.	5	5	0	0	T|0.037;C|0.962	644	294	350	0	0
MANBAL	63905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35944722	35944722	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MANBAL-90	NM_001003897	exon3	c.G162A	p.P54P	TGAACCGTCTGAG	.	335	107	265	1	.	0	0	0	0	0
NRIP1	8204	broad.mit.edu	37	21	16337507	16337507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NRIP1-186	NM_003489	exon4	c.C3007A	p.P1003T	CACCTGGGTATGA	.	34	3	48	0	.	12	12	0	0	0
LTN1	26046	ucsc.edu;bcgsc.ca	37	21	30341891	30341891	+	Missense_Mutation	SNP	A	A	G	rs2254796	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LTN1-530	NM_015565	exon9	c.T1346C	p.L449S	GACTCTAAAGAGC	.	45	5	49	0	A|0.317;G|0.683	1	1	0	0	0
PLAC4	191585	bcgsc.ca	37	21	42551432	42551432	+	Nonsense_Mutation	SNP	T	T	A	rs5019194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_182832	exon1	c.A124T	p.R42X	GGTGTCTGGGGTG	.	128	9	119	2	.	0	0	0	0	0
KRTAP10-6	386674	ucsc.edu	37	21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	rs201334923		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KRTAP10-6-90	NM_198688	exon1	c.T379C	p.S127P	AGACGGACACACA	.	120	62	163	27	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	rs874101	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SCARF2-341	NM_153334	exon11	c.C2510G	p.A837G	TCAGGCGCGGGCA	.	5	5	0	0	G|0.531;C|0.469	0	0	0	0	0
RAB36	9609	bcgsc.ca	37	22	23503121	23503121	+	Silent	SNP	G	G	A	rs5759611	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAB36-228	NM_004914	exon10	c.G873A	p.S291S	GCAGTCGGTGCTG	.	212	8	250	2	G|0.776;A|0.224	2	2	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	9	9	0	0	G|0.797;A|0.203	2	0	2	0	0
FAT4	79633	bcgsc.ca	37	4	126238924	126238924	+	Missense_Mutation	SNP	A	A	T	rs6847454	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FAT4-108	NM_024582	exon1	c.A1358T	p.Q453L	CAGTCCAGGCGCG	.	207	7	260	3	A|0.518;T|0.482	2	2	0	0	0
EDIL3	10085	bcgsc.ca	37	5	83259162	83259162	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	EDIL3-131	NM_005711	exon10	c.A1155G	p.P385P	TTTGGTTGGAACA	.	93	6	60	0	.	133	133	0	0	0
MAN2A1	4124	broad.mit.edu;bcgsc.ca	37	5	109091082	109091082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MAN2A1-92	NM_002372	exon5	c.G760A	p.D254N	ATGCCTGATGAAG	.	147	8	116	0	.	22	22	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730190	138730190	+	Missense_Mutation	SNP	T	T	A	rs199886274		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_001161546	exon1	c.A581T	p.E194V	CCCTCCTCCAGAG	.	11	8	0	0	.	0	0	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	HLA-A-92	NM_001242758	exon2	c.A233G	p.Q78R	TAGAGCAGGAGGG	.	229	20	190	3	A|0.979;G|0.021	892	890	1	1	0
MCCD1	401250	bcgsc.ca	37	6	31497706	31497706	+	Silent	SNP	C	C	T	rs2075582	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MCCD1-90	NM_001011700	exon2	c.C354T	p.G118G	AGGAGGCGCCTAA	.	205	8	230	1	C|0.215;T|0.785	0	0	0	0	0
HGC6.3	0	broad.mit.edu	37	6	168377311	168377313	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_001129895	exon1	c.20_22del	p.7_8del	GGGAGGAGAAGAA	.	120	7	129	2	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372499	5372499	+	Silent	SNP	C	C	T	rs113405524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TNRC18-46	NM_001080495	exon19	c.G5901A	p.K1967K	GCGCCCCTTCTCC	.	8	4	0	0	C|0.989;T|0.011	0	0	0	0	0
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	22348060	22348060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAPGEF5-206	NM_012294	exon5	c.A119G	p.Y40C	TACAAGTAGCTAC	.	117	7	62	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	104	0	104	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	6	6	0	0	G|0.760;A|0.240	36	0	36	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51111334	51111334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COBL-95	NM_015198	exon8	c.G1152T	p.V384V	TGACAGCACCTGC	.	104	43	81	0	.	0	0	0	0	0
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu	37	7	53103693	53103693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_182595	exon1	c.G329T	p.R110L	TGGGGCGAGACCT	.	82	8	21	0	.	0	0	0	0	0
MLL3	58508	bcgsc.ca	37	7	151962269	151962269	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MLL3-1398	NM_170606	exon8	c.G1038A	p.V346V	GTCGCACACTGCA	.	264	25	309	9	.	1	1	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	7	4	1	0	C|0.663;G|0.337	1	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626628	1626628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	DLGAP2-22	NM_004745	exon9	c.A2297C	p.D766A	CTCCAGACCCCTG	.	77	13	97	17	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940658	144940658	+	Missense_Mutation	SNP	C	C	T	rs201270359		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	EPPK1-25	NM_031308	exon1	c.G6764A	p.R2255Q	CCGGGCCGCAGCA	.	32	15	2	0	.	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	17	7	0	0	G|0.807;C|0.193	5	5	0	0	0
CTSL1	1514	ucsc.edu;bcgsc.ca	37	9	90346015	90346015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CTSL1-93	NM_145918	exon8	c.C995G	p.T332S	ACCCCACTGTGTG	.	89	49	124	2	.	325	49	276	0	0
SECISBP2	79048	ucsc.edu	37	9	91947874	91947874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SECISBP2-93	NM_024077	exon6	c.G853A	p.A285T	AATGCCGCTACCA	.	38	4	71	1	.	26	26	0	0	0
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112899504	112899504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PALM2-AKAP2-475	NM_007203	exon8	c.A1680T	p.Q560H	CAAACAATTTCAG	.	70	13	96	0	.	26	18	8	0	0
GSN	2934	bcgsc.ca	37	9	124083614	124083614	+	Silent	SNP	C	C	T	rs2304393	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GSN-154	NM_000177	exon10	c.C1413T	p.G471G	TGGAGGCGACAGC	.	95	6	133	1	C|0.923;T|0.077	286	286	0	0	0
NR5A1	2516	broad.mit.edu	37	9	127262468	127262468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NR5A1-186	NM_004959	exon4	c.C771G	p.D257E	CGGCTGGTCGGGG	.	71	3	31	0	.	49	49	0	0	0
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137676893	137676893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COL5A1-524	NM_000093	exon30	c.G2543A	p.R848H	AGGGTCGCGGAGG	.	56	7	59	0	.	9	6	3	0	0
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16871808	16871808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RBBP7-227	NM_001198719	exon6	c.T887C	p.M296T	TACATCATAAGTT	.	117	39	87	0	.	5	0	5	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222406	118222406	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KIAA1210-67	NM_020721	exon11	c.C2787A	p.T929T	TGAACTGGTGGGG	.	130	5	122	0	.	0	0	0	0	0
LAG3	3902	hgsc.bcm.edu	37	12	6887493	6887494	+	In_Frame_Ins	INS	-	-	CCGGAG	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LAG3-90	NM_002286	exon8	c.1515_1516insCCGGAG	p.E505delinsEPE	GCAAGAACCGGAG	.	84	22	37	0	.	0	0	0	0	0
MYO1A	4640	broad.mit.edu	37	12	57422572	57422573	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MYO1A-231	NM_005379	exon28	c.3099_3100insA	p.K1033fs	ACTCCCCTTTTTT	.	243	7	173	0	.	0	0	0	0	0
PLA2G1B	5319	broad.mit.edu	37	12	120763699	120763700	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PLA2G1B-91	NM_000928	exon2	c.159_160insT	p.L53fs	GCCCCCCAAGCCA	.	129	19	98	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	48	14	39	0	.	0	0	0	0	0