Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ARHGEF16 27237 ucsc.edu;bcgsc.ca 37 1 3395174 3395174 + Silent SNP C C A rs61734742 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ARHGEF16-228 NM_014448 exon12 c.C1812A p.S604S GGACTCCGCGTAA . 64 7 72 0 C|0.938;A|0.062 0 0 0 0 0 PEX14 5195 bcgsc.ca 37 1 10596341 10596341 + Silent SNP C C T rs12375 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PEX14-90 NM_004565 exon3 c.C156T p.F52F AGCATTCCTAAAG . 172 8 273 0 C|0.770;T|0.230 0 0 0 0 0 MTHFR 4524 bcgsc.ca 37 1 11850927 11850927 + Missense_Mutation SNP C C T rs2274976 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MTHFR-90 NM_005957 exon12 c.G1781A p.R594Q CCCCACCGCTCAA . 260 9 199 3 C|0.949;T|0.051 0 0 0 0 0 HNRNPCL1 343069 ucsc.edu;bcgsc.ca 37 1 12907358 12907358 + Missense_Mutation SNP T T C rs74587302 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . HNRNPCL1-68 NM_001013631 exon2 c.A785G p.Q262R TCCCCCTGATCTT . 59 10 88 0 . 0 0 0 0 0 AGMAT 79814 ucsc.edu;bcgsc.ca 37 1 15909850 15909850 + Missense_Mutation SNP C C G rs6429757 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . AGMAT-91 NM_024758 exon2 c.G313C p.G105R CTGTCCCAAGCAT . 70 7 74 0 C|0.348;G|0.652 0 0 0 0 0 WASF2 10163 broad.mit.edu;bcgsc.ca 37 1 27736665 27736665 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . WASF2-228 NM_006990 exon8 c.C860T p.A287V GGTCCAGCCAAAC . 105 25 68 1 . 0 0 0 0 0 OPRD1 4985 hgsc.bcm.edu 37 1 29138975 29138975 + Missense_Mutation SNP G G T rs1042114 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OPRD1-69 NM_000911 exon1 c.G80T p.C27F GCGCCTGCCCCAG . 16 16 0 0 G|0.061;T|0.939 0 0 0 0 0 C1orf94 84970 broad.mit.edu 37 1 34666398 34666398 + Frame_Shift_Del DEL A A - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C1orf94-90 NM_001134734 exon3 c.1035delA p.P345fs GGAGCCAAAAAAG . 180 7 143 0 . 0 0 0 0 0 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 39920766 39920766 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MACF1-165 NM_012090 exon86 c.T14895A p.H4965Q TGAGCATCAGGTA . 115 8 110 0 . 0 0 0 0 0 KDM4A 9682 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 44134891 44134891 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KDM4A-227 NM_014663 exon10 c.G1284A p.T428T GATGACGGAGTGC . 305 65 210 1 . 0 0 0 0 0 FOXD2 2306 hgsc.bcm.edu 37 1 47904909 47904909 + Missense_Mutation SNP G G C rs2405913 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FOXD2-226 NM_004474 exon1 c.G1102C p.A368P TTCTACGCGGCGT . 4 4 0 0 G|0.835;C|0.165 0 0 0 0 0 ADAMTSL4 54507 bcgsc.ca 37 1 150526044 150526044 + Missense_Mutation SNP G G C rs41317515 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ADAMTSL4-92 NM_019032 exon6 c.G577C p.A193P GAAGAGGCTATTC . 186 8 123 0 G|0.456;C|0.544 0 0 0 0 0 FLG 2312 bcgsc.ca 37 1 152280782 152280782 + Missense_Mutation SNP A A G rs2184953 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FLG-106 NM_002016 exon3 c.T6580C p.Y2194H TGTCATATGTTTT . 241 9 219 2 A|0.532;G|0.468 0 0 0 0 0 LOR 4014 hgsc.bcm.edu 37 1 153233701 153233701 + Silent SNP A A C rs1143390 bycluster;byfrequency;by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LOR-90 NM_000427 exon2 c.A276C p.G92G CTCCGGAGGCGGC . 5 5 0 0 A|0.594;C|0.406 0 0 0 0 0 GATAD2B 57459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153800736 153800736 + Nonsense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GATAD2B-90 NM_020699 exon2 c.A88T p.K30X GTCGCTTTGCCAG . 51 17 25 0 . 0 0 0 0 0 NUP210L 91181 hgsc.bcm.edu 37 1 154067601 154067601 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NUP210L-77 NM_001159484 exon15 c.C1997A p.T666K TGCCATGTCACCA . 56 4 36 0 . 0 0 0 0 0 CADM3 57863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159170626 159170626 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CADM3-92 NM_021189 exon10 c.G1213A p.D405N GGCTCCGACGATG . 392 114 343 0 . 0 0 0 0 0 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 167095939 167095939 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DUSP27-71 NM_001080426 exon5 c.G1571C p.G524A GCGTGGGCTCTGA . 477 28 397 0 . 0 0 0 0 0 TNR 7143 broad.mit.edu 37 1 175375841 175375841 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TNR-324 NM_003285 exon3 c.G10C p.D4H CCCCATCTGCCCC . 113 4 100 0 . 0 0 0 0 0 IER5 51278 hgsc.bcm.edu 37 1 181058313 181058313 + Missense_Mutation SNP G G A rs3747955 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . IER5-227 NM_016545 exon1 c.G275A p.R92H CCGCTCGTGCCTC . 20 20 0 0 G|0.568;A|0.432 0 0 0 0 0 RGSL1 353299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182525184 182525184 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RGSL1-226 NM_001137669 exon21 c.G3223C p.E1075Q AAAAAAGAGAAGT . 136 36 145 0 . 0 0 0 0 0 SLC26A9 115019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205890762 205890762 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SLC26A9-92 NM_052934 exon17 c.C1987A p.H663N GGGTGTGGAAGGT . 85 26 62 0 . 0 0 0 0 0 KCTD3 51133 hgsc.bcm.edu 37 1 215741053 215741053 + Missense_Mutation SNP T T G rs2275768 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KCTD3-93 NM_016121 exon1 c.T25G p.F9V GGCAGCTTCCCCG . 57 14 2 0 T|0.721;G|0.279 0 0 0 0 0 TGFB2 7042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 218609421 218609421 + Silent SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TGFB2-710 NM_001135599 exon6 c.C948G p.S316S GCCCTCCTACAGA . 291 36 317 0 . 0 0 0 0 0 LBR 3930 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 225600179 225600179 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LBR-228 NM_194442 exon8 c.A1061G p.N354S AGGTCATTCCGGG . 289 53 280 1 . 0 0 0 0 0 H3F3AP4 440926 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 226253533 226253533 + RNA SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . . . . . GAAGACTCAGAGT . 231 64 174 0 . 0 0 0 0 0 GJC2 57165 hgsc.bcm.edu 37 1 228346053 228346053 + Silent SNP C C T rs116557768 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GJC2-68 NM_020435 exon2 c.C594T p.H198H GCAACACGATGGG . 73 49 1 0 C|0.986;T|0.014 0 0 0 0 0 GPRIN2 9721 ucsc.edu 37 10 46999601 46999601 + Missense_Mutation SNP G G A rs9422022 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPRIN2-90 NM_014696 exon3 c.G721A p.V241M AGGGAGGTGAGGG . 137 20 95 0 G|0.639;A|0.361 0 0 0 0 0 GPRIN2 9721 hgsc.bcm.edu 37 10 47000217 47000217 + Missense_Mutation SNP G G A rs72780221 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPRIN2-90 NM_014696 exon3 c.G1337A p.R446H TGCGGCGCCCCAG . 35 10 0 0 G|0.901;A|0.099 0 0 0 0 0 ARHGAP22 58504 hgsc.bcm.edu 37 10 49659006 49659006 + Missense_Mutation SNP G G A rs80345791 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ARHGAP22-228 NM_001256024 exon9 c.C1214T p.P405L TGCGCGGGCAGGC . 34 14 1 0 G|0.987;A|0.013 0 0 0 0 0 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 55582342 55582342 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDH15-193 NM_001142763 exon35 c.G5165T p.R1722I GTCTCTCTCCTAG . 43 11 89 0 . 0 0 0 0 0 SPOCK2 9806 hgsc.bcm.edu 37 10 73848075 73848075 + Silent SNP C C T rs2306324 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SPOCK2-90 NM_001134434 exon2 c.G12A p.P4P GCAGCCCGGGGCG . 10 5 0 0 C|0.870;T|0.130 0 0 0 0 0 OIT3 170392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 74684374 74684374 + Missense_Mutation SNP G G A rs139078371 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OIT3-70 NM_152635 exon7 c.G1339A p.V447I GACGAGGTCCTGA . 214 40 152 0 G|1.000;A|0.000 0 0 0 0 0 C10orf11 83938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 77542776 77542776 + Nonsense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C10orf11-90 NM_032024 exon1 c.A43T p.K15X TCAAATAAAAGGT . 110 17 102 0 . 0 0 0 0 0 TBC1D12 23232 hgsc.bcm.edu 37 10 96163039 96163039 + Silent SNP C C G rs2477534 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TBC1D12-68 NM_015188 exon1 c.C669G p.P223P CAGCCCCGCCAGC . 33 17 1 0 C|0.339;G|0.661 0 0 0 0 0 LZTS2 84445 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 102766836 102766836 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LZTS2-155 NM_032429 exon5 c.G1921A p.E641K AGCCTGGAGCTGG . 247 44 84 1 . 0 0 0 0 0 NFKB2 4791 hgsc.bcm.edu 37 10 104159196 104159196 + Silent SNP A A G rs4919633 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NFKB2-522 NM_001077494 exon13 c.A1269G p.P423P GGAGCCAAGCGCC . 16 16 0 0 A|0.009;G|0.991 0 0 0 0 0 CDHR5 53841 broad.mit.edu;bcgsc.ca 37 11 624261 624263 + In_Frame_Del DEL CTC CTC - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CDHR5-90 NM_031264 exon3 c.262_264del p.88_88del TGACTTCTCCTGT . 340 38 121 0 . 0 0 0 0 0 MUC2 4583 broad.mit.edu 37 11 1092947 1092947 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MUC2-90 NM_002457 exon30 c.C4766A p.T1589N CCACCACCACTAC . 186 5 114 1 . 0 0 0 0 0 OR52D1 390066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5510738 5510738 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OR52D1-68 NM_001005163 exon1 c.G802C p.G268R CGCTTTGGTCACC . 123 27 122 0 . 0 0 0 0 0 DNHD1 144132 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6579406 6579406 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DNHD1-24 NM_144666 exon25 c.G8881A p.A2961T GCCCTGGCAACCT . 242 45 144 1 . 0 0 0 0 0 FANCF 2188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 22646416 22646416 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FANCF-1083 NM_022725 exon1 c.T941C p.L314P TGACAGAGGCTTT . 96 10 93 0 . 0 0 0 0 0 PRDM11 56981 broad.mit.edu 37 11 45204461 45204461 + Silent SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PRDM11-91 NM_001256695 exon4 c.C273A p.G91G CCATGGCCCCCCG . 113 5 80 0 . 0 0 0 0 0 DGKZ 8525 hgsc.bcm.edu 37 11 46387868 46387868 + Missense_Mutation SNP A A G rs1317826 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DGKZ-676 NM_001105540 exon2 c.A62G p.Q21R GGCAGCAGCGGCC . 4 4 0 0 A|0.608;G|0.392 0 0 0 0 0 DGKZ 8525 hgsc.bcm.edu 37 11 46387906 46387906 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DGKZ-676 NM_001105540 exon2 c.C100T p.R34W AAGGCCCGGCGTC . 5 5 0 0 . 0 0 0 0 0 DDB2 1643 broad.mit.edu 37 11 47256376 47256376 + Frame_Shift_Del DEL C C - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DDB2-971 NM_000107 exon6 c.771delC p.F257fs TTGGTTCCTGGCC . 232 21 107 0 . 0 0 0 0 0 OR5M1 390168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56380625 56380625 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OR5M1-94 NM_001004740 exon1 c.G354A p.M118I CAATGCCATTGAA . 362 74 350 0 . 0 0 0 0 0 OR10Q1 219960 broad.mit.edu;bcgsc.ca 37 11 57995729 57995729 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OR10Q1-70 NM_001004471 exon1 c.G619A p.V207M TGCTCACGACATA . 277 12 276 0 . 0 0 0 0 0 PPP1R32 220004 bcgsc.ca 37 11 61249383 61249383 + Silent SNP C C A rs3019200 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001170753 exon2 c.C102A p.T34T CTGCACCGCCTAC . 61 5 44 0 C|0.251;A|0.749 0 0 0 0 0 SYT7 9066 broad.mit.edu;bcgsc.ca 37 11 61291923 61291923 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SYT7-94 NM_001252065 exon7 c.T929C p.I310T TCCCCAATGGGGT . 272 11 169 0 . 0 0 0 0 0 INCENP 3619 hgsc.bcm.edu 37 11 61914282 61914282 + Silent SNP G G A rs113981632 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . INCENP-227 NM_001040694 exon15 c.G2112A p.E704E GCGCGAGCAGGAG . 9 5 1 0 A|0.035;G|0.965 0 0 0 0 0 TM7SF2 7108 hgsc.bcm.edu 37 11 64880090 64880090 + Silent SNP G G C rs4930284 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TM7SF2-91 NM_003273 exon2 c.G156C p.P52P CCTGCCGGGGCTG . 6 6 0 0 G|0.005;C|0.995 0 0 0 0 0 PCNXL3 399909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65386303 65386303 + Silent SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCNXL3-46 NM_032223 exon6 c.G1470C p.R490R CCAGCGGACGCCT . 34 12 18 0 . 0 0 0 0 0 SPTBN2 6712 broad.mit.edu 37 11 66461607 66461608 + Splice_Site DEL CA CA - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SPTBN2-155 . . . . GTGACTCACAATC . 18 8 11 0 . 0 0 0 0 0 LRRC32 2615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 76370747 76370747 + Silent SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LRRC32-90 NM_005512 exon3 c.C1890A p.I630I GAGGATGATGATG . 108 16 95 0 . 0 0 0 0 0 B3GNT6 192134 hgsc.bcm.edu 37 11 76751585 76751604 + In_Frame_Del DEL TGGCCCTTCGGCGTGCAGCT TGGCCCTTCGGCGTGCAGCT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TGGCCCTTCGGCGTGCAGCT TGGCCCTTCGGCGTGCAGCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_138706 exon4 c.989_1006del p.330_336del GCATCCTGGCCCT . 32 0 1 0 . 0 0 0 0 0 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 78369696 78369696 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001098816 exon34 c.G7717T p.A2573S TCAAGGCAAACTT . 114 11 114 0 . 0 0 0 0 0 TMEM135 65084 broad.mit.edu 37 11 86749164 86749164 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TMEM135-514 NM_022918 exon1 c.C77T p.S26F GGGTCTCCTTCCT . 98 5 98 1 . 0 0 0 0 0 FAT3 120114 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 92624186 92624186 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAT3-73 NM_001008781 exon25 c.A13581T p.E4527D TTCCGAAGTAGCC . 145 40 150 2 . 0 0 0 0 0 BACE1 23621 hgsc.bcm.edu 37 11 117186506 117186506 + Silent SNP G G A rs28917234 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . BACE1-91 NM_138972 exon1 c.C6T p.A2A GGCTTGGGCCATG . 16 6 0 0 G|0.979;A|0.021 0 0 0 0 0 PDZD3 79849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 119057343 119057343 + Nonsense_Mutation SNP G G T rs141570563 alternate_allele TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PDZD3-153 NM_001168468 exon4 c.G274T p.G92X CAGGAAGGAGACA . 210 57 130 0 G|1.000;A|0.000 0 0 0 0 0 B3GAT1 27087 hgsc.bcm.edu 37 11 134253805 134253805 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . B3GAT1-91 NM_054025 exon3 c.C390T p.T130T GCGCGCGGTCAGC . 21 9 1 0 . 0 0 0 0 0 FKBP4 2288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2912330 2912330 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FKBP4-226 NM_002014 exon10 c.C1286G p.A429G CAGAGGCTTCCTC . 64 17 36 0 . 0 0 0 0 0 C1S 716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7177252 7177252 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C1S-91 NM_201442 exon12 c.T1364A p.F455Y TCTTCTTTGACAA . 100 23 84 0 . 0 0 0 0 0 IPO8 10526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 30783824 30783824 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . IPO8-227 NM_006390 exon25 c.T3084A p.F1028L AAAATTAAATGCG . 87 21 116 0 . 0 0 0 0 0 CNTN1 1272 broad.mit.edu 37 12 41419057 41419057 + Missense_Mutation SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CNTN1-1149 NM_001843 exon21 c.T2629G p.Y877D ACCCAGTATTTTA . 70 4 110 1 . 0 0 0 0 0 LETMD1 25875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 51451824 51451824 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LETMD1-90 NM_001243689 exon8 c.C964G p.L322V TGTTATCTCCGTG . 118 23 73 0 . 0 0 0 0 0 KRT8 3856 broad.mit.edu 37 12 53298675 53298675 + Missense_Mutation SNP A A C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KRT8-92 NM_001256282 exon2 c.T175G p.S59A TGCGGGAACCGGG . 108 7 40 0 . 0 0 0 0 0 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 57594933 57594933 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LRP1-596 NM_002332 exon65 c.T10342A p.C3448S AGGGACTGCCGTG . 148 12 82 0 . 0 0 0 0 0 SLC26A10 65012 broad.mit.edu 37 12 58015619 58015619 + Silent SNP C C T rs184174469 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SLC26A10-531 NM_133489 exon4 c.C702T p.V234V GGAAGTCGTCTTG . 213 4 58 0 C|0.994;T|0.006 0 0 0 0 0 CAND1 55832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 67691276 67691276 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CAND1-516 NM_018448 exon5 c.G581C p.R194T GGAAAAGAACCAT . 102 20 112 0 . 0 0 0 0 0 CCER1 196477 broad.mit.edu 37 12 91347423 91347423 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_152638 exon1 c.C1097T p.S366L AAGATTGATAAAG . 111 4 132 0 . 0 0 0 0 0 AMDHD1 144193 hgsc.bcm.edu 37 12 96337183 96337183 + Missense_Mutation SNP A A G rs7955450 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . AMDHD1-90 NM_152435 exon1 c.A7G p.S3G ATGGCAAGCGGCC . 13 13 0 0 A|0.273;G|0.727 0 0 0 0 0 AMDHD1 144193 hgsc.bcm.edu 37 12 96337225 96337225 + Silent SNP C C T rs1436121 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . AMDHD1-90 NM_152435 exon1 c.C49T p.L17L GTGGTGCTGGTGT . 21 18 0 0 C|0.752;T|0.248 0 0 0 0 0 PAH 5053 broad.mit.edu;bcgsc.ca 37 12 103306614 103306614 + Silent SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PAH-72 NM_000277 exon2 c.C123A p.L41L TTCTTTGAGTGAG . 232 10 230 3 . 0 0 0 0 0 FAM109A 144717 hgsc.bcm.edu 37 12 111800570 111800570 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM109A-90 NM_001177996 exon4 c.T701C p.M234T GGGGCCATGTCCA . 23 10 1 0 . 0 0 0 0 0 RNFT2 84900 hgsc.bcm.edu 37 12 117187907 117187907 + Silent SNP T T C rs111256849 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001109903 exon4 c.T345C p.H115H CCACCATTTCCAC . 19 14 1 0 T|0.767;C|0.233 0 0 0 0 0 RFC5 5985 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 118454660 118454660 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RFC5-227 NM_007370 exon1 c.G28A p.E10K CAGCAGGAGCAGC . 176 43 103 1 . 0 0 0 0 0 STX2 2054 broad.mit.edu 37 12 131285773 131285773 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . STX2-90 NM_194356 exon8 c.C600T p.D200D CATGATGTCCTTG . 141 5 100 0 . 0 0 0 0 0 FBRSL1 57666 hgsc.bcm.edu 37 12 133159733 133159733 + Missense_Mutation SNP C C T rs11550079 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FBRSL1-70 NM_001142641 exon17 c.C2507T p.A836V AGGAGGCCGCCAA . 9 4 0 0 C|0.470;T|0.530 0 0 0 0 0 MTUS2 23281 bcgsc.ca 37 13 29599410 29599410 + Missense_Mutation SNP C C T rs116224145 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MTUS2-218 NM_001033602 exon1 c.C605T p.P202L TGACTCCGCAGCA . 98 5 137 0 C|0.972;T|0.028 0 0 0 0 0 FAM194B 220081 hgsc.bcm.edu 37 13 46170726 46170726 + Missense_Mutation SNP A A G rs28548352 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM194B-68 NM_182542 exon3 c.T415C p.Y139H CCAGATACTCTTC . 40 6 80 0 . 0 0 0 0 0 FAM194B 220081 hgsc.bcm.edu 37 13 46170735 46170735 + Missense_Mutation SNP C C T rs28460344 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM194B-68 NM_182542 exon3 c.G406A p.E136K CTTCCTCCTCCAG . 41 7 79 0 . 0 0 0 0 0 FAM194B 220081 hgsc.bcm.edu 37 13 46170737 46170737 + Missense_Mutation SNP T T C rs200764156 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM194B-68 NM_182542 exon3 c.A404G p.E135G TCCTCCTCCAGAT . 42 7 78 0 . 0 0 0 0 0 DLEU7 220107 hgsc.bcm.edu 37 13 51417535 51417535 + Missense_Mutation SNP G G A rs898861 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_198989 exon1 c.C248T p.A83V GAGTTCGCCCGCG . 7 6 0 0 G|0.789;A|0.211 0 0 0 0 0 SLITRK6 84189 hgsc.bcm.edu 37 13 86369481 86369481 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SLITRK6-137 NM_032229 exon2 c.C1163A p.T388N TCCAAAGTGAAAT . 68 4 126 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 103389045 103389045 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001146197 exon4 c.G14002A p.E4668K GCAGTTCCTTTGT . 24 6 35 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 103397964 103397964 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001146197 exon4 c.C5083A p.Q1695K AAAATTGTTTTAA . 23 7 94 0 . 0 0 0 0 0 COL4A2 1284 bcgsc.ca 37 13 111111173 111111173 + Silent SNP G G A rs7990214 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . COL4A2-95 NM_001846 exon22 c.G1488A p.P496P TCTTCCGGGACTG . 183 7 183 1 G|0.463;A|0.537 0 0 0 0 0 COL4A2 1284 bcgsc.ca 37 13 111111235 111111235 + Missense_Mutation SNP G G A rs7990383 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . COL4A2-95 NM_001846 exon22 c.G1550A p.R517K GGGACAGAGGAGA . 163 7 168 1 G|0.479;A|0.521 0 0 0 0 0 MCF2L 23263 broad.mit.edu 37 13 113719264 113719264 + Silent SNP C C T rs199810332 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MCF2L-228 NM_001112732 exon7 c.C621T p.F207F AAGTTTCGCCCTC . 187 4 144 2 C|0.999;T|0.001 0 0 0 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 59 6 12 0 . 0 0 0 0 0 TRIM9 114088 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 51561207 51561207 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TRIM9-227 NM_015163 exon1 c.C451A p.L151M CTTCCAGTACGCG . 136 9 71 0 . 0 0 0 0 0 LGALS3 3958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 55611906 55611906 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LGALS3-514 NM_002306 exon6 c.C670T p.R224W AATCATCGGGTTA . 141 39 113 0 . 0 0 0 0 0 CEP128 145508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 81259439 81259439 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CEP128-91 NM_152446 exon13 c.C1225G p.L409V TCTCCAGTTCACG . 85 20 78 0 . 0 0 0 0 0 UNC79 57578 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 93962775 93962775 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_020818 exon6 c.T200A p.L67Q AATTACTGGAATG . 258 16 312 0 . 0 0 0 0 0 OTUB2 78990 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 94510351 94510353 + In_Frame_Del DEL CTT CTT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OTUB2-500 NM_023112 exon4 c.253_255del p.85_85del AATGACCTTCTGG . 251 57 220 0 . 0 0 0 0 0 EML1 2009 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 100404174 100404174 + Nonsense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . EML1-138 NM_001008707 exon21 c.C2173T p.Q725X TGTAAGCAAGTCG . 173 34 125 1 . 0 0 0 0 0 CKB 1152 hgsc.bcm.edu 37 14 103988180 103988180 + Silent SNP G G T rs1136165 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CKB-115 NM_001823 exon4 c.C456A p.R152R GATGGCGCGGCGC . 10 10 0 0 G|0.327;T|0.673 0 0 0 0 0 KIF26A 26153 hgsc.bcm.edu 37 14 104644984 104644984 + Silent SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KIF26A-24 NM_015656 exon13 c.G5208T p.P1736P GCCCCCGCCCCTG . 58 12 12 0 . 0 0 0 0 0 NPAP1 23742 hgsc.bcm.edu 37 15 24921115 24921115 + Missense_Mutation SNP C C A rs35022251 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_018958 exon1 c.C101A p.P34Q CCTCCCCGCCCGG . 13 8 0 0 C|0.970;A|0.030 0 0 0 0 0 NPAP1 23742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 24921967 24921967 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_018958 exon1 c.C953A p.P318H CTCCTCCCAGAGC . 43 15 39 0 . 0 0 0 0 0 DUOX1 53905 hgsc.bcm.edu 37 15 45453135 45453135 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DUOX1-142 NM_017434 exon30 c.T3803A p.L1268Q TGAGCCTGAGCCG . 163 15 147 0 . 0 0 0 0 0 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 54542551 54542551 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UNC13C-51 NM_001080534 exon6 c.G3357T p.W1119C CCTGTGGGGCATT . 190 47 261 0 . 0 0 0 0 0 ISLR 3671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74467204 74467204 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ISLR-155 NM_201526 exon2 c.A5G p.Q2R CCATGCAGGAGCT . 41 14 39 0 . 0 0 0 0 0 PTPN9 5780 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 75809664 75809665 + Frame_Shift_Del DEL AT AT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 AT AT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PTPN9-226 NM_002833 exon5 c.463_464del p.155_155del CCACACATGTCAT . 92 29 103 0 . 0 0 0 0 0 MESP2 145873 hgsc.bcm.edu 37 15 90319773 90319773 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MESP2-68 NM_001039958 exon1 c.G185A p.R62Q GCTCCCGAGCCGC . 9 5 0 0 . 0 0 0 0 0 UNKL 64718 broad.mit.edu 37 16 1417283 1417283 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UNKL-90 NM_001193388 exon14 c.G1856A p.R619Q AGCTGCCGGTCGC . 118 10 15 0 . 0 0 0 0 0 CLCN7 1186 bcgsc.ca 37 16 1503879 1503879 + Silent SNP T T A rs2235579 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CLCN7-92 NM_001287 exon14 c.A1170T p.A390A GAACACTGCTCCA . 216 9 124 1 T|0.472;A|0.528 0 0 0 0 0 SYNGR3 9143 hgsc.bcm.edu 37 16 2042139 2042139 + Silent SNP C C A rs12922682 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SYNGR3-90 NM_004209 exon2 c.C264A p.L88L GCTGCTCGATGTG . 50 33 0 0 C|0.996;A|0.004 0 0 0 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2059674 2059674 + Missense_Mutation SNP T T C rs71384660 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF598-432 NM_178167 exon2 c.A74G p.E25G CCGCCTTCCCGCT . 8 8 0 0 T|0.007;C|0.993 0 0 0 0 0 MEFV 4210 hgsc.bcm.edu 37 16 3304463 3304463 + Missense_Mutation SNP C C T rs224222 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MEFV-228 NM_000243 exon2 c.G605A p.R202Q CGCAGCCGGACCT . 16 9 0 0 C|0.816;T|0.184 0 0 0 0 0 DNASE1 1773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3705910 3705910 + Missense_Mutation SNP G G C rs143363152 alternate_allele TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DNASE1-90 NM_005223 exon3 c.G208C p.V70L ACTGCCGTGGGGA . 204 50 126 0 G|1.000;T|0.000 0 0 0 0 0 RRN3 54700 broad.mit.edu 37 16 15168670 15168670 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RRN3-91 NM_018427 exon11 c.C907A p.L303I GGTCGAGCCGTTC . 93 8 81 3 . 0 0 0 0 0 ADCY7 113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50326734 50326734 + Nonsense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ADCY7-91 NM_001114 exon4 c.C685T p.Q229X CGCCAGCAGGTGG . 47 14 33 0 . 0 0 0 0 0 CDH1 999 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 68867311 68867314 + Frame_Shift_Del DEL CAGA CAGA - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CAGA CAGA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CDH1-3377 NM_004360 exon16 c.2558_2561del p.853_854del CAGAGTCAGACAA . 146 24 85 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599696 88599697 + Frame_Shift_Del DEL GA GA - rs67549438 alternate_allele TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 GA GA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZFPM1-90 NM_153813 exon10 c.1330_1331del p.444_444del AGAGCGGAGCCTC . 17 10 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599701 88599701 + Frame_Shift_Del DEL T T - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZFPM1-90 NM_153813 exon10 c.1335delT p.P445fs GGAGCCTCTGGCC . 12 10 0 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599703 88599705 + In_Frame_Del DEL TGG TGG - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TGG TGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZFPM1-90 NM_153813 exon10 c.1337_1339del p.446_447del AGCCTCTGGCCCA . 12 10 0 0 . 0 0 0 0 0 CYBA 1535 hgsc.bcm.edu 37 16 88709869 88709869 + Silent SNP C C T rs72547284 byfrequency;by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CYBA-90 NM_000101 exon6 c.G480A p.P160P CTCGGCCGGGGGC . 5 4 0 0 C|0.985;T|0.015 0 0 0 0 0 GLTPD2 388323 hgsc.bcm.edu 37 17 4693384 4693384 + Silent SNP T T C rs150754782 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GLTPD2-68 NM_001014985 exon4 c.T669C p.G223G CCTGGGTCCGCAT . 16 9 1 0 T|0.978;C|0.022 0 0 0 0 0 PLSCR3 57048 hgsc.bcm.edu 37 17 7297121 7297121 + Silent SNP G G A rs2277641 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLSCR3-22 NM_020360 exon3 c.C42T p.P14P AGGTGGGGGCGAA . 7 5 1 0 G|0.929;A|0.071 0 0 0 0 0 LSMD1 84316 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7760499 7760499 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LSMD1-91 NM_032356 exon1 c.C243T p.R81R GTCCTCGCGCTCT . 95 19 62 1 . 0 0 0 0 0 MYH2 4620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10428659 10428659 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MYH2-194 NM_017534 exon33 c.T4544A p.I1515N TCAGAAATCTCCT . 60 20 78 0 . 0 0 0 0 0 HS3ST3A1 9955 broad.mit.edu 37 17 13400090 13400090 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . HS3ST3A1-515 NM_006042 exon2 c.G645C p.K215N GGGCGTCTTCTCC . 419 13 272 1 . 0 0 0 0 0 UBB 7314 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 16285604 16285604 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UBB-47 NM_018955 exon2 c.A383G p.D128G TGGAAGATGGCCG . 437 83 214 0 . 0 0 0 0 0 SMCR8 140775 broad.mit.edu 37 17 18221001 18221001 + Frame_Shift_Del DEL A A - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SMCR8-91 NM_144775 exon1 c.1898delA p.E633fs CAGTGGAAAATGC . 187 7 133 0 . 0 0 0 0 0 NEK8 284086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27064883 27064883 + Silent SNP G G A rs146798411 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NEK8-335 NM_178170 exon7 c.G936A p.S312S ACTGTCGTCAGTG . 237 35 70 0 G|1.000;A|0.000 0 0 0 0 0 KRTAP3-2 83897 bcgsc.ca 37 17 39156027 39156027 + Missense_Mutation SNP G G A rs3829598 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_031959 exon1 c.C79T p.R27C CACAGCGGCAGGA . 195 8 315 3 G|0.865;A|0.135 0 0 0 0 0 FKBP10 60681 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39974745 39974745 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FKBP10-227 NM_021939 exon4 c.C693G p.I231M TATCATCCCTCCA . 142 45 149 0 . 0 0 0 0 0 BECN1 8678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40963676 40963676 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . BECN1-228 NM_003766 exon11 c.A1181G p.Y394C GACCTGTAGGGAA . 97 27 85 0 . 0 0 0 0 0 GRN 2896 broad.mit.edu 37 17 42427607 42427607 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GRN-517 NM_002087 exon5 c.G361A p.V121M AACTCCGTGGGTG . 155 5 99 0 . 0 0 0 0 0 MARCH10 162333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 60779069 60779069 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MARCH10-90 NM_001100875 exon11 c.G2422A p.V808I GCTAGACGACCTG . 109 16 59 0 . 0 0 0 0 0 RAB37 326624 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 72740494 72740494 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RAB37-230 NM_001163989 exon6 c.C429T p.I143I GGTGATCATGCTG . 124 10 62 0 . 0 0 0 0 0 FDXR 2232 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72862635 72862635 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FDXR-226 NM_001258012 exon4 c.G455C p.G152A ACGTTGCCCCAGA . 401 102 184 1 . 0 0 0 0 0 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 76424635 76424635 + Frame_Shift_Del DEL C C - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DNAH17-142 NM_173628 exon77 c.12559delG p.A4187fs TGCCTGCCCCCGA . 154 43 88 0 . 0 0 0 0 0 TIMP2 7077 hgsc.bcm.edu 37 17 76921135 76921135 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TIMP2-650 NM_003255 exon1 c.C36T p.L12L GAGGCCGAGCGCC . 17 8 0 0 . 0 0 0 0 0 BAHCC1 57597 broad.mit.edu 37 17 79410879 79410881 + In_Frame_Del DEL GAG GAG - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . BAHCC1-23 . . . . GAGGCTGAGGAGG . 108 11 30 0 . 0 0 0 0 0 FASN 2194 hgsc.bcm.edu 37 17 80043739 80043739 + Silent SNP A A G rs2229422 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FASN-90 NM_004104 exon23 c.T3741C p.A1247A GTGGCCAGCCAGC . 10 4 1 0 T|0.697;G|0.014;C|0.242;A|0.047 0 0 0 0 0 CSNK1D 1453 broad.mit.edu;ucsc.edu 37 17 80206823 80206823 + Silent SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CSNK1D-909 NM_001893 exon8 c.C1125A p.R375R GGCCCCGCGGTGC . 98 13 69 1 . 0 0 0 0 0 ANKRD30B 374860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 14763720 14763720 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ANKRD30B-24 NM_001145029 exon7 c.C856A p.P286T GCTGCACCCTTGG . 55 11 46 0 . 0 0 0 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 31323513 31323513 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ASXL3-49 NM_030632 exon12 c.A3701T p.N1234I ATAAAAATTCTGT . 37 15 51 0 . 0 0 0 0 0 SETBP1 26040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 42531586 42531586 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SETBP1-155 NM_015559 exon4 c.G2281A p.V761M CCAGCCGTGCCTT . 152 27 158 0 . 0 0 0 0 0 SERPINB10 5273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 61587036 61587036 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SERPINB10-227 NM_005024 exon4 c.C387T p.D129D AGAAGACATGAAA . 48 7 87 0 . 0 0 0 0 0 CDH7 1005 broad.mit.edu 37 18 63547655 63547655 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CDH7-94 NM_004361 exon12 c.T1883C p.V628A TTATCGTCACTAT . 55 3 50 0 . 0 0 0 0 0 CBLN2 147381 hgsc.bcm.edu 37 18 70209321 70209321 + Silent SNP C C A rs7237888 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CBLN2-90 NM_182511 exon3 c.G75T p.P25P GCCGCCCGGCTCG . 8 8 0 0 C|0.390;A|0.610 0 0 0 0 0 SALL3 27164 hgsc.bcm.edu 37 18 76753768 76753768 + Missense_Mutation SNP C C G rs2447437 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SALL3-155 NM_171999 exon2 c.C1777G p.L593V CCGCCCCTCACTA . 6 6 0 0 C|0.780;G|0.220 0 0 0 0 0 C19orf21 126353 bcgsc.ca 37 19 756985 756985 + Silent SNP T T G rs8110536 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C19orf21-91 NM_173481 exon2 c.T39G p.P13P CATCCCTCAGGCA . 337 10 128 0 T|0.840;G|0.160 0 0 0 0 0 ARID3A 1820 hgsc.bcm.edu 37 19 929678 929678 + Silent SNP G G A rs3826948 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ARID3A-90 NM_005224 exon2 c.G150A p.E50E GCCCGAGAGTGCC . 8 6 0 0 T|0.495;C|0.504 0 0 0 0 0 GRIN3B 116444 hgsc.bcm.edu 37 19 1009551 1009577 + In_Frame_Del DEL GCCCCCGCGGAGGCCCCACCACACTCT GCCCCCGCGGAGGCCCCACCACACTCT - rs58448123 alternate_allele TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 GCCCCCGCGGAGGCCCCACCACACTCT GCCCCCGCGGAGGCCCCACCACACTCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GRIN3B-90 NM_138690 exon9 c.3082_3108del p.1028_1036del AGAGCGGCCCCCG . 18 17 0 0 . 0 0 0 0 0 ABCA7 10347 hgsc.bcm.edu 37 19 1065044 1065044 + Silent SNP C C T rs4147935 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ABCA7-98 NM_019112 exon46 c.C6159T p.G2053G TGGAGGCCGCCTG . 27 19 1 0 C|0.766;T|0.234 0 0 0 0 0 CREB3L3 84699 broad.mit.edu 37 19 4168347 4168347 + Splice_Site SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CREB3L3-92 NM_001271995 exon6 c.712-1G>A . TTGGCAGTACGAG . 66 25 46 2 . 0 0 0 0 0 KDM4B 23030 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 5041154 5041154 + Silent SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KDM4B-226 NM_015015 exon5 c.T324C p.C108C GTACTGTACCCCG . 140 12 104 0 . 0 0 0 0 0 C3 718 broad.mit.edu;bcgsc.ca 37 19 6684638 6684638 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C3-95 NM_000064 exon32 c.G4053A p.K1351K TTTGGCCTTAGCA . 180 11 140 1 . 0 0 0 0 0 KEAP1 9817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10600462 10600462 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KEAP1-637 NM_012289 exon4 c.G1393A p.V465M CAGCCACGCCCAC . 264 27 60 0 . 0 0 0 0 0 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 11097013 11097013 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SMARCA4-1523 NM_003072 exon4 c.C504T p.G168G CCGGGGCCCAACC . 136 17 50 0 . 0 0 0 0 0 NOTCH3 4854 ucsc.edu 37 19 15284881 15284881 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NOTCH3-855 NM_000435 exon25 c.C4734T p.I1578I TCACCCGATCACC . 111 19 21 1 . 0 0 0 0 0 NCAN 1463 broad.mit.edu 37 19 19339014 19339014 + Missense_Mutation SNP A A C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NCAN-94 NM_004386 exon8 c.A2585C p.Q862P GCCCTCAGGTGGC . 105 3 58 0 . 0 0 0 0 0 TSHZ3 57616 ucsc.edu;bcgsc.ca 37 19 31770605 31770605 + Missense_Mutation SNP G G A rs200205002 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TSHZ3-232 NM_020856 exon2 c.C94T p.P32S CCTCTGGGTCTAA . 39 5 26 0 G|0.999;A|0.001 0 0 0 0 0 GPATCH1 55094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33579080 33579080 + Silent SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPATCH1-91 NM_018025 exon2 c.T114A p.T38T TCAGACTGTCAGA . 45 11 31 0 . 0 0 0 0 0 ETV2 2116 broad.mit.edu 37 19 36135558 36135558 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ETV2-226 NM_014209 exon7 c.C833A p.A278D AGGTGGCTCGGCT . 154 10 48 1 . 0 0 0 0 0 SIPA1L3 23094 hgsc.bcm.edu 37 19 38573068 38573068 + Missense_Mutation SNP C C T rs150674546 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SIPA1L3-91 NM_015073 exon3 c.C863T p.A288V AACCTGCGCGGGG . 27 15 2 0 C|0.989;T|0.011 0 0 0 0 0 GGN 199720 hgsc.bcm.edu 37 19 38876464 38876464 + Missense_Mutation SNP C C G rs11083455 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GGN-90 NM_152657 exon3 c.G1438C p.A480P GGGCTGCGGTGGG . 11 6 0 0 C|0.789;G|0.211 0 0 0 0 0 FAM98C 147965 hgsc.bcm.edu 37 19 38894307 38894307 + Missense_Mutation SNP G G A rs150024474 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM98C-91 NM_174905 exon3 c.G322A p.E108K CTTCGGGAACCCG . 12 9 1 0 G|0.968;A|0.032 0 0 0 0 0 MAP3K10 4294 hgsc.bcm.edu 37 19 40720079 40720079 + Silent SNP C C T rs3746005 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MAP3K10-981 NM_002446 exon9 c.C2493T p.D831D ATCGGACGGGGCG . 4 4 0 0 C|0.260;T|0.740 0 0 0 0 0 CYP2B6 1555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41509976 41509976 + Missense_Mutation SNP T T C rs138912615 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CYP2B6-92 NM_000767 exon2 c.T242C p.V81A GTGGAGTAGAGGC . 355 46 180 0 T|1.000;C|0.000 0 0 0 0 0 CEACAM6 4680 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42270108 42270108 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CEACAM6-91 NM_002483 exon5 c.T976C p.S326P GTCCTCTCAGCTG . 176 16 92 0 . 0 0 0 0 0 DMRTC2 63946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42354402 42354402 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DMRTC2-90 NM_001040283 exon7 c.C778G p.P260A CTCCAGCCCTGTG . 127 20 92 0 . 0 0 0 0 0 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42795782 42795782 + Missense_Mutation SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CIC-591 NM_015125 exon11 c.T2771A p.V924E TCCTAGTGCCTCT . 145 28 43 0 . 0 0 0 0 0 GRIN2D 2906 hgsc.bcm.edu 37 19 48945880 48945880 + Silent SNP T T C rs62130268 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GRIN2D-156 NM_000836 exon13 c.T2697C p.A899A CAGCGCTGAGGCC . 6 6 0 0 T|0.245;C|0.755 0 0 0 0 0 SCAF1 58506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50157674 50157674 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SCAF1-68 NM_021228 exon8 c.C3385G p.Q1129E CTGATCCAGGCCA . 196 37 97 0 . 0 0 0 0 0 PNKP 11284 broad.mit.edu 37 19 50370414 50370414 + Silent SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PNKP-253 NM_007254 exon2 c.T48C p.P16P TCCCCCAGGGGGG . 107 15 20 2 . 0 0 0 0 0 MYH14 79784 hgsc.bcm.edu 37 19 50713814 50713814 + Silent SNP G G T rs181055215 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MYH14-23 NM_001077186 exon2 c.G192T p.G64G TCACGGGTTCGAG . 86 52 2 0 . 0 0 0 0 0 LILRA4 23547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54849247 54849247 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LILRA4-91 NM_012276 exon4 c.G615A p.V205V CGACCACACGTAT . 102 16 65 0 . 0 0 0 0 0 LILRA2 11027 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 55098715 55098715 + Missense_Mutation SNP C C T rs149580797 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LILRA2-91 NM_001130917 exon8 c.C1354T p.R452C CTCATCCGCATGG . 266 36 142 0 C|0.996;T|0.004 0 0 0 0 0 ZNF628 89887 hgsc.bcm.edu 37 19 55993260 55993260 + Missense_Mutation SNP A A G rs34864744 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF628-22 NM_033113 exon3 c.A700G p.T234A CCGGGTACCGCCT . 4 4 0 0 A|0.270;G|0.730 0 0 0 0 0 ZNF784 147808 hgsc.bcm.edu 37 19 56133551 56133551 + Missense_Mutation SNP C C T rs200843026 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF784-68 NM_203374 exon2 c.G538A p.E180K CCACCTCCGCCCT . 26 17 0 0 . 0 0 0 0 0 ZNF787 126208 hgsc.bcm.edu 37 19 56599438 56599440 + In_Frame_Del DEL TCG TCG - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TCG TCG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF787-69 NM_001002836 exon3 c.1101_1103del p.367_368del GCGGCCTCGTCGT . 11 11 0 0 . 0 0 0 0 0 PEG3 5178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57335765 57335765 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PEG3-164 NM_001146184 exon3 c.G259C p.E87Q AGAGCTCGATGAT . 218 60 225 0 . 0 0 0 0 0 ZNF814 730051 hgsc.bcm.edu 37 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001144989 exon3 c.C968A p.P323H TCATAAGGTCTTT . 108 15 42 0 G|0.500;T|0.500 0 0 0 0 0 ZNF814 730051 hgsc.bcm.edu 37 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . 104 15 42 0 C|0.500;T|0.500 0 0 0 0 0 PLEKHH2 130271 broad.mit.edu 37 2 43953487 43953487 + Missense_Mutation SNP A A C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLEKHH2-92 NM_172069 exon17 c.A2618C p.Y873S AAGATTATGAAGC . 314 7 230 0 . 0 0 0 0 0 PROKR1 10887 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 68873425 68873425 + Missense_Mutation SNP A A G rs147256235 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PROKR1-523 NM_138964 exon1 c.A472G p.I158V CTGGCCATCGCCA . 150 32 100 0 A|1.000;G|0.000 0 0 0 0 0 HK2 3099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 75115104 75115104 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . HK2-252 NM_000189 exon16 c.G2294T p.G765V AGCGTGGACTACT . 275 39 188 0 . 0 0 0 0 0 TGOLN2 10618 broad.mit.edu;bcgsc.ca 37 2 85553698 85553700 + In_Frame_Del DEL AAG AAG - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TGOLN2-22 NM_001206841 exon2 c.1155_1157del p.385_386del TATGCAAAGAAGT . 292 42 168 0 . 0 0 0 0 0 AFF3 3899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 100167958 100167958 + Missense_Mutation SNP C C T rs150108936 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . AFF3-230 NM_001025108 exon24 c.G3734A p.R1245Q CTGTTCCGCAGCC . 90 26 49 0 C|1.000;T|0.000 0 0 0 0 0 POU3F3 5455 bcgsc.ca 37 2 105473180 105473180 + Silent SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . POU3F3-45 NM_006236 exon1 c.C1212A p.G404G GCAGGGCCGCAAG . 634 30 350 3 . 0 0 0 0 0 C2orf40 84417 hgsc.bcm.edu 37 2 106682235 106682235 + Silent SNP C C G rs4266035 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . C2orf40-90 NM_032411 exon1 c.C15G p.P5P CTCCCCCGCGCGG . 16 16 0 0 C|0.795;G|0.205 0 0 0 0 0 EN1 2019 broad.mit.edu 37 2 119600586 119600586 + Silent SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . EN1-154 NM_001426 exon2 c.G1107T p.A369A GTGCAGCGCCAGG . 207 9 105 2 . 0 0 0 0 0 TMEM194B 100131211 hgsc.bcm.edu 37 2 191399378 191399378 + Missense_Mutation SNP C C G rs13412879 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001142645 exon1 c.G4C p.G2R GCGGCCCCATTTC . 6 6 0 0 C|0.836;G|0.164 0 0 0 0 0 IKZF2 22807 broad.mit.edu 37 2 213872285 213872285 + Silent SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . IKZF2-226 NM_016260 exon8 c.C1380A p.V460V ATTGAAGACCTTG . 383 9 370 0 . 0 0 0 0 0 DNPEP 23549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220250725 220250725 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DNPEP-90 NM_012100 exon6 c.C555G p.I185M CTCGTTGATATTT . 260 57 130 0 . 0 0 0 0 0 ASB18 401036 hgsc.bcm.edu 37 2 237123104 237123104 + Silent SNP G G C rs7588748 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ASB18-227 NM_212556 exon4 c.C1002G p.L334L GGTCTGGAGCACG . 39 17 3 0 G|0.754;C|0.246 0 0 0 0 0 PANK2 80025 hgsc.bcm.edu 37 20 3870124 3870124 + Missense_Mutation SNP G G C rs3737084 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PANK2-115 NM_153638 exon1 c.G377C p.G126A TGGGAGGGGGCCG . 6 6 0 0 G|0.122;C|0.878 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29628299 29628299 + RNA SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FRG1B-22 . . . . GCAAAAAGTAAAA . 414 25 505 10 . 0 0 0 0 0 PROCR 10544 broad.mit.edu 37 20 33762727 33762727 + Missense_Mutation SNP G G T rs200377875 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PROCR-226 NM_006404 exon2 c.G293T p.R98L TCGTGCGCCTGGT . 65 9 20 2 . 0 0 0 0 0 ACTR5 79913 hgsc.bcm.edu 37 20 37377139 37377139 + Silent SNP C C T rs2254105 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ACTR5-90 NM_024855 exon1 c.C18T p.F6F CGTGTTCCCGTTC . 21 12 0 0 C|0.769;T|0.231 0 0 0 0 0 TOP1 7150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 39746844 39746844 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TOP1-1148 NM_003286 exon18 c.A1858T p.N620Y TCTTATAACCGTG . 351 47 230 0 . 0 0 0 0 0 PLCG1 5335 ucsc.edu;bcgsc.ca 37 20 39794128 39794128 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLCG1-911 NM_182811 exon15 c.G1548T p.K516N CAGCAAGATCTAC . 218 44 152 4 . 0 0 0 0 0 RBPJL 11317 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 43945172 43945172 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RBPJL-227 NM_014276 exon11 c.C1232T p.A411V TCCACGCGGGGCT . 397 25 193 0 . 0 0 0 0 0 ZSWIM3 140831 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 44505469 44505472 + Frame_Shift_Del DEL TATT TATT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TATT TATT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZSWIM3-92 NM_080752 exon2 c.272_275del p.91_92del ATAGACTATTTAT . 194 40 117 0 . 0 0 0 0 0 TMEM189 387521 hgsc.bcm.edu 37 20 48770159 48770159 + Missense_Mutation SNP T T C rs232733 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TMEM189-22 NM_199129 exon1 c.A16G p.N6D GCCAGTTCTCGGC . 5 5 0 0 C|0.999;T|0.001 0 0 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444569 61444569 + Silent SNP A A G rs3204348 byfrequency;by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OGFR-68 NM_007346 exon7 c.A1602G p.P534P CGAGCCAGCCGAG . 94 9 19 0 A|0.979;G|0.021 0 0 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444633 61444633 + Missense_Mutation SNP G G A rs75570150 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OGFR-68 NM_007346 exon7 c.G1666A p.E556K CCAGCCGAGAGCC . 50 11 1 0 . 0 0 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444637 61444637 + Missense_Mutation SNP G G C rs78981100 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . OGFR-68 NM_007346 exon7 c.G1670C p.S557T CCGAGAGCCCATC . 49 11 2 0 . 0 0 0 0 0 RBM11 54033 broad.mit.edu 37 21 15592023 15592023 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_144770 exon2 c.C236A p.P79Q GAAGACCAATTAA . 194 6 208 0 . 0 0 0 0 0 SEPT5 5413 hgsc.bcm.edu 37 22 19706305 19706305 + Silent SNP G G T rs187090154 by1000genomes TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SEPT5-636 NM_001009939 exon1 c.G45T p.L15L GCAGCTGCTGTCG . 23 7 0 0 G|0.991;T|0.009 0 0 0 0 0 PI4KA 5297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 21150535 21150535 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PI4KA-454 NM_058004 exon18 c.G2176C p.V726L CATCCACCAGGTG . 229 64 192 0 . 0 0 0 0 0 PLA2G3 50487 bcgsc.ca 37 22 31535872 31535872 + Missense_Mutation SNP G G C rs2074735 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLA2G3-226 NM_015715 exon1 c.C469G p.L157V ACCACAGTGTGCC . 78 5 71 0 G|0.733;C|0.267 0 0 0 0 0 PACSIN2 11252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 43289603 43289603 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PACSIN2-68 NM_007229 exon3 c.G77A p.R26Q ACAGTCCGCTTGT . 191 32 132 0 . 0 0 0 0 0 PRRT3 285368 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9988097 9988097 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PRRT3-90 NM_207351 exon4 c.C2760T p.R920R CCCGTGGCGCCAG . 258 67 126 0 . 0 0 0 0 0 CCDC13 152206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42799655 42799655 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CCDC13-91 NM_144719 exon2 c.C183T p.H61H CCCTGCGTGGAGA . 129 29 76 0 . 0 0 0 0 0 SACM1L 22908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 45776839 45776839 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SACM1L-91 NM_014016 exon14 c.C1213T p.R405C TTAGCTCGTCGTT . 119 35 109 0 . 0 0 0 0 0 SCAP 22937 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 47455478 47455481 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CTGT CTGT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SCAP-91 NM_012235 exon23 c.3703_3706del p.1235_1236del GGTAGACTGTCTG . 137 0 103 0 . 0 0 0 0 0 CACNA1D 776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 53844133 53844133 + Silent SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CACNA1D-100 NM_000720 exon48 c.G6060C p.L2020L CCCCCTGATCCAA . 177 38 128 0 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 8 8 0 0 G|0.252;C|0.748 0 0 0 0 0 GBE1 2632 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 81627176 81627176 + Silent SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GBE1-25 NM_000158 exon12 c.G1518T p.L506L AGGAGTCAGGACA . 84 17 95 1 . 0 0 0 0 0 PTPLB 201562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 123247281 123247281 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PTPLB-226 NM_198402 exon4 c.G333A p.V111V TGACATCACCTGG . 43 6 83 0 . 0 0 0 0 0 MYLK 4638 bcgsc.ca 37 3 123357037 123357037 + Silent SNP A A G rs820463 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MYLK-365 NM_053025 exon29 c.T4842C p.N1614N CCCCGCATTCTCT . 126 5 158 0 A|0.733;G|0.267 0 0 0 0 0 COL6A5 256076 broad.mit.edu 37 3 130098349 130098349 + Silent SNP G G A rs16845861 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_153264 exon4 c.G756A p.R252R TTTAAGGCATCTT . 95 5 147 0 G|0.633;A|0.367 0 0 0 0 0 ASTE1 28990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 130737507 130737507 + Missense_Mutation SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ASTE1-90 NM_014065 exon4 c.G1356T p.Q452H AATGGTCTGTTTC . 117 12 160 0 . 0 0 0 0 0 TSC22D2 9819 hgsc.bcm.edu 37 3 150128392 150128392 + Missense_Mutation SNP G G A rs879634 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TSC22D2-91 NM_014779 exon1 c.G1255A p.A419T CAGAATGCTTCCT . 28 13 0 0 G|0.797;A|0.203 0 0 0 0 0 LRRC31 79782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169558017 169558017 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LRRC31-93 NM_024727 exon9 c.C1412T p.P471L AACATGGTCCACC . 217 24 137 0 . 0 0 0 0 0 HTR3D 200909 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183756600 183756600 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . HTR3D-90 NM_001163646 exon8 c.G1202A p.G401D CAGGGGGCTCAGA . 488 75 280 1 . 0 0 0 0 0 CRIPAK 285464 hgsc.bcm.edu 37 4 1388755 1388755 + Silent SNP C C G rs141481663 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CRIPAK-90 NM_175918 exon1 c.C456G p.P152P CGTGCCCATGCGG . 72 13 3 0 C|0.960;G|0.040 0 0 0 0 0 TNIP2 79155 hgsc.bcm.edu 37 4 2757800 2757800 + Missense_Mutation SNP G G C rs74548850 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TNIP2-90 NM_024309 exon1 c.C217G p.R73G GGAAGCGCGCAAC . 15 8 0 0 G|0.957;C|0.043 0 0 0 0 0 JAKMIP1 152789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 6114570 6114570 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . JAKMIP1-292 NM_001099433 exon2 c.A8G p.K3R CCTTTCTTCGACA . 85 27 60 0 . 0 0 0 0 0 CCDC96 257236 hgsc.bcm.edu 37 4 7044357 7044357 + Silent SNP A A G rs871133 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CCDC96-90 NM_153376 exon1 c.T309C p.V103V AGCCCCAACCTCG . 10 10 0 0 A|0.036;G|0.964 0 0 0 0 0 SEL1L3 23231 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 25760664 25760664 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_015187 exon21 c.C2982T p.I994I TTCCTCGATTAGC . 79 37 78 1 . 0 0 0 0 0 ZAR1 326340 hgsc.bcm.edu 37 4 48492434 48492434 + Missense_Mutation SNP G G C rs10008444 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZAR1-90 NM_175619 exon1 c.G126C p.Q42H GCAGCAGCGCGGC . 10 10 0 0 G|0.025;C|0.975 0 0 0 0 0 SOWAHB 345079 hgsc.bcm.edu 37 4 77818202 77818202 + Silent SNP T T C rs2645674 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001029870 exon1 c.A801G p.T267T CCTGCTTGTCGCA . 10 6 1 0 T|0.691;C|0.309 0 0 0 0 0 ALPK1 80216 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 113352657 113352657 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ALPK1-337 NM_001102406 exon11 c.G1954A p.E652K CTTCAGGAACCCA . 116 17 124 1 . 0 0 0 0 0 INTU 27152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 128628123 128628123 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . INTU-91 NM_015693 exon12 c.A2270T p.K757M TGCTTAAGGTGTG . 127 17 151 0 . 0 0 0 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134072249 134072249 + Silent SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDH10-92 NM_032961 exon1 c.T954C p.Y318Y GGACTATGAAGAG . 156 40 123 0 . 0 0 0 0 0 TTC29 83894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 147830303 147830303 + Missense_Mutation SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TTC29-90 NM_031956 exon5 c.A275C p.D92A AGGGCATCCCACC . 49 10 57 0 . 0 0 0 0 0 SRD5A1 6715 hgsc.bcm.edu 37 5 6633779 6633779 + Silent SNP C C G rs248793 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SRD5A1-90 NM_001047 exon1 c.C90G p.R30R CGCGCGCAATCGT . 9 6 0 0 C|0.454;G|0.546 0 0 0 0 0 EGFLAM 133584 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 38418285 38418285 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . EGFLAM-187 NM_001205301 exon12 c.C1612T p.L538F CAGTCGCTCGCTG . 205 35 152 2 . 0 0 0 0 0 NAIP 4671 broad.mit.edu;bcgsc.ca 37 5 70308258 70308258 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NAIP-205 NM_004536 exon4 c.G485C p.R162T GCAAGTCTAGCCT . 204 6 120 0 . 0 0 0 0 0 HMGCR 3156 broad.mit.edu;bcgsc.ca 37 5 74639696 74639698 + In_Frame_Del DEL ATT ATT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . HMGCR-227 NM_001130996 exon3 c.184_186del p.62_62del AGTGACATTATAA . 295 38 278 0 . 0 0 0 0 0 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 90055402 90055402 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPR98-103 NM_032119 exon58 c.G12117C p.K4039N AGAAAAGACTGTA . 108 8 90 0 . 0 0 0 0 0 RGMB 285704 hgsc.bcm.edu 37 5 98109838 98109838 + Missense_Mutation SNP A A C rs2662263 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001012761 exon3 c.A187C p.S63R CGCCGCAGCCCCG . 5 5 0 0 T|0.046;G|0.950 0 0 0 0 0 ST8SIA4 7903 hgsc.bcm.edu 37 5 100147798 100147798 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ST8SIA4-153 NM_005668 exon5 c.C833A p.P278H GTGCTGGGTCTTT . 87 5 51 0 . 0 0 0 0 0 ZNF474 133923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 121487769 121487769 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF474-90 NM_207317 exon2 c.C84G p.N28K TATCAACCAAGCT . 92 20 94 0 . 0 0 0 0 0 CHSY3 337876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 129241282 129241282 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CHSY3-25 NM_175856 exon1 c.T760C p.Y254H GACAAGTATGAGT . 276 39 148 0 . 0 0 0 0 0 PCDHA8 56140 broad.mit.edu;bcgsc.ca 37 5 140221852 140221852 + Frame_Shift_Del DEL T T - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDHA8-92 NM_031856 exon1 c.946delT p.Y316fs AACTTATACAAAA . 476 66 435 0 . 0 0 0 0 0 PCDHA12 56137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140255507 140255507 + Silent SNP T T A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_018903 exon1 c.T450A p.S150S GGACTCTCATTTT . 197 38 148 0 . 0 0 0 0 0 PCDHB10 56126 hgsc.bcm.edu 37 5 140573844 140573844 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDHB10-92 NM_018930 exon1 c.C1719T p.T573T CTGCACCGAGCTG . 87 23 2 0 . 0 0 0 0 0 PCDHB10 56126 broad.mit.edu 37 5 140574170 140574175 + In_Frame_Del DEL AGGCCG AGGCCG - rs58244182 bycluster;alternate_allele TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDHB10-92 NM_018930 exon1 c.2045_2050del p.682_684del AGGCCCAGGCCGA . 93 15 9 0 -|0.750;GGCCGA|0.250 0 0 0 0 0 PCDHB13 56123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140594583 140594583 + Silent SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDHB13-93 NM_018933 exon1 c.T888C p.N296N GATCAATCCCTTG . 194 48 228 1 . 0 0 0 0 0 PCDHGA8 9708 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140774156 140774156 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_014004 exon1 c.G1776A p.V592V GGTGGTGGCGGTG . 353 64 84 0 . 0 0 0 0 0 PCDHGB7 56099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140799544 140799544 + Silent SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PCDHGB7-29 NM_018927 exon1 c.G2118A p.A706A CCTCGCGGTGATT . 202 32 142 0 . 0 0 0 0 0 KCTD16 57528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 143853595 143853595 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KCTD16-137 NM_020768 exon4 c.T1205C p.F402S AGGATTTCCTAAA . 118 8 133 0 . 0 0 0 0 0 FBXO38 81545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 147820759 147820759 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FBXO38-231 NM_030793 exon21 c.C3122G p.P1041R CAGAGCCCAACAG . 133 18 131 0 . 0 0 0 0 0 ARL10 285598 hgsc.bcm.edu 37 5 175792605 175792605 + Silent SNP G G C rs2303667 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ARL10-91 NM_173664 exon1 c.G39C p.L13L GGCGCTGGGCGGC . 6 6 0 0 G|0.585;C|0.415 0 0 0 0 0 UNC5A 90249 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176305481 176305481 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UNC5A-91 NM_133369 exon13 c.C2025G p.I675M GGAGATCCCCTTT . 377 57 201 0 . 0 0 0 0 0 DBN1 1627 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176885468 176885468 + Missense_Mutation SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DBN1-587 NM_080881 exon13 c.A1373C p.D458A GCAGTGTCAGTTT . 688 135 292 3 . 0 0 0 0 0 DBN1 1627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 176894041 176894041 + Missense_Mutation SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DBN1-587 NM_080881 exon8 c.A584C p.E195A TCCTCCTCCTTCC . 95 8 34 0 . 0 0 0 0 0 FOXQ1 94234 hgsc.bcm.edu 37 6 1313117 1313117 + Missense_Mutation SNP A A C rs9502889 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FOXQ1-226 NM_033260 exon1 c.A178C p.T60P AGAGATACGCAGG . 7 7 0 0 A|0.161;C|0.839 0 0 0 0 0 FOXQ1 94234 hgsc.bcm.edu 37 6 1313121 1313121 + Missense_Mutation SNP A A C rs9502890 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FOXQ1-226 NM_033260 exon1 c.A182C p.Q61P ATACGCAGGGCGA . 7 7 0 0 A|0.173;C|0.827 0 0 0 0 0 PPP1R3G 648791 hgsc.bcm.edu 37 6 5086211 5086211 + Silent SNP G G C rs584962 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PPP1R3G-136 NM_001145115 exon1 c.G492C p.L164L GCGCCTGCGAAGC . 5 5 0 0 G|0.000;C|1.000 0 0 0 0 0 GPANK1 7918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31630170 31630170 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPANK1-91 NM_001199238 exon4 c.G944A p.R315Q ACAGCTCGGGTAT . 210 32 92 0 . 0 0 0 0 0 STK19 8859 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31940267 31940267 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . STK19-336 NM_032454 exon2 c.G409C p.D137H GAGTCGGATCCTC . 38 8 44 0 . 0 0 0 0 0 ITPR3 3710 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33651116 33651116 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ITPR3-1085 NM_002224 exon35 c.C4730G p.P1577R CCTTCCCCCGCGT . 226 64 132 1 . 0 0 0 0 0 PEX6 5190 hgsc.bcm.edu 37 6 42946490 42946490 + Silent SNP C C A rs9462858 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PEX6-91 NM_000287 exon1 c.G399T p.V133V TCCGGGCACTGGG . 10 6 0 0 C|0.673;A|0.327 0 0 0 0 0 CENPQ 55166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49456158 49456158 + Nonsense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CENPQ-92 NM_018132 exon7 c.G571T p.E191X GAGGTGGAAGAAG . 176 31 228 0 . 0 0 0 0 0 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56391195 56391195 + Silent SNP C C A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DST-523 NM_015548 exon50 c.G10224T p.V3408V CTCCTCCACCTTC . 149 38 162 0 . 0 0 0 0 0 PHF3 23469 broad.mit.edu 37 6 64422984 64422984 + Missense_Mutation SNP C C T rs3734881 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PHF3-229 NM_015153 exon15 c.C5500T p.H1834Y CCACCACATTTGC . 26 3 43 0 C|0.995;T|0.005 0 0 0 0 0 RAET1G 353091 bcgsc.ca 37 6 150240829 150240829 + Missense_Mutation SNP G G C rs9397449 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RAET1G-90 NM_001001788 exon2 c.C209G p.T70R GTGACTGTCTTGC . 604 16 593 7 G|0.807;C|0.193 0 0 0 0 0 SYTL3 94120 bcgsc.ca 37 6 159178345 159178345 + Missense_Mutation SNP C C T rs901363 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SYTL3-90 NM_001242384 exon15 c.C1240T p.P414S ATCATTCCTCTGG . 121 7 105 0 C|0.605;T|0.395 0 0 0 0 0 USP42 84132 hgsc.bcm.edu 37 7 6193521 6193521 + Missense_Mutation SNP G G C rs61729726 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . USP42-659 NM_032172 exon15 c.G2336C p.R779P CGCCCCGCGATCC . 17 5 0 0 G|0.456;C|0.544 0 0 0 0 0 GARS 2617 hgsc.bcm.edu 37 7 30634661 30634661 + Missense_Mutation SNP C C G rs1049402 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GARS-91 NM_002047 exon1 c.C124G p.P42A TCCTGCCCCCCGA . 19 19 0 0 C|0.329;G|0.671 0 0 0 0 0 ANLN 54443 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 36436004 36436006 + In_Frame_Del DEL CAG CAG - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CAG CAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ANLN-517 NM_018685 exon2 c.148_150del p.50_50del AGTAACCAGCAGC . 103 25 142 0 . 0 0 0 0 0 GLI3 2737 broad.mit.edu;bcgsc.ca 37 7 42005406 42005406 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GLI3-1149 NM_000168 exon15 c.G3265A p.E1089K AATCCTCATCGTT . 307 11 215 0 . 0 0 0 0 0 GLI3 2737 hgsc.bcm.edu 37 7 42005678 42005678 + Missense_Mutation SNP G G A rs929387 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GLI3-1149 NM_000168 exon15 c.C2993T p.P998L TGGCCCGGCGCAT . 5 4 0 0 G|0.565;A|0.435 0 0 0 0 0 WBSCR22 114049 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 73101340 73101340 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . WBSCR22-90 NM_001202560 exon5 c.G277C p.D93H GCTGTGGACCGAG . 80 4 61 0 . 0 0 0 0 0 TFPI2 7980 bcgsc.ca 37 7 93518486 93518486 + Silent SNP C C T rs34489123 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TFPI2-515 NM_006528 exon3 c.G321A p.E107E GGACCCCTCACAC . 89 6 110 0 C|0.942;T|0.058 0 0 0 0 0 AP1S1 1174 broad.mit.edu 37 7 100800053 100800053 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . AP1S1-226 NM_001283 exon2 c.G182C p.R61T ATAAGAGGTGACT . 29 3 25 0 . 0 0 0 0 0 GPR85 54329 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 112724050 112724050 + Missense_Mutation SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPR85-91 NM_001146265 exon3 c.T727C p.W243R CTAGCCAATTGGC . 102 7 99 0 . 0 0 0 0 0 KCND2 3751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 119915231 119915231 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . KCND2-517 NM_012281 exon1 c.C545T p.T182M CCAGCACGATGGC . 122 27 141 0 . 0 0 0 0 0 GPR124 25960 broad.mit.edu 37 8 37686785 37686785 + Silent SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPR124-157 NM_032777 exon4 c.C417T p.L139L AGATCTCTCCAAC . 79 17 57 2 . 0 0 0 0 0 TGS1 96764 bcgsc.ca 37 8 56705325 56705325 + Missense_Mutation SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TGS1-227 NM_024831 exon6 c.A1349T p.K450M GATTCAAGTATGG . 55 4 60 0 . 0 0 0 0 0 ZNF696 79943 hgsc.bcm.edu 37 8 144378868 144378868 + Silent SNP A A G rs7386259 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF696-90 NM_030895 exon3 c.A1023G p.R341R CCAGCGACTCCAC . 27 9 0 0 A|0.118;G|0.882 0 0 0 0 0 MROH6 642475 hgsc.bcm.edu 37 8 144649625 144649625 + Silent SNP T T C rs10097556 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001100878 exon14 c.A1944G p.R648R CTGCAGTCGCCCT . 8 8 0 0 T|0.058;C|0.942 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 145001588 145001588 + Missense_Mutation SNP C C T rs11136334 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLEC-141 NM_201380 exon27 c.G4157A p.R1386Q TCCTGCCGCAGCT . 35 11 1 0 C|0.707;T|0.293 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 145001784 145001784 + Silent SNP A A G rs3135109 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLEC-141 NM_201380 exon27 c.T3961C p.L1321L CAAGCAACTGGGC . 23 5 0 0 G|0.246;A|0.754 0 0 0 0 0 ZNF517 340385 hgsc.bcm.edu 37 8 146033347 146033347 + Missense_Mutation SNP T T C rs2976653 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . ZNF517-90 NM_213605 exon5 c.T1046C p.V349A GCGGCGTGGGGCA . 10 10 0 0 G|0.992;C|0.006 0 0 0 0 0 TPD52L3 89882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 6328653 6328653 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . TPD52L3-68 NM_033516 exon1 c.G58C p.E20Q ACTTCTGAACTGG . 85 15 83 0 . 0 0 0 0 0 VPS13A 23230 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 79933239 79933241 + In_Frame_Del DEL CTA CTA - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CTA CTA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . VPS13A-161 NM_001018038 exon41 c.5045_5047del p.1682_1683del CTTCTTCTACTGC . 126 21 149 0 . 0 0 0 0 0 UBQLN1 29979 broad.mit.edu;bcgsc.ca 37 9 86294747 86294747 + Missense_Mutation SNP C C G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . UBQLN1-90 NM_053067 exon4 c.G654C p.L218F CTGTATCAACTGC . 134 8 153 1 . 0 0 0 0 0 RMI1 80010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 86616405 86616405 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RMI1-90 NM_024945 exon3 c.G504C p.L168F AATTTTGATTTAT . 52 7 57 0 . 0 0 0 0 0 FAM120A 23196 broad.mit.edu;ucsc.edu 37 9 96318860 96318860 + Missense_Mutation SNP T T C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FAM120A-90 NM_014612 exon13 c.T2471C p.L824P TTGACCTCTGTGA . 75 9 62 1 . 0 0 0 0 0 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 113169657 113169657 + Silent SNP A A G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SVEP1-75 NM_153366 exon38 c.T8223C p.Y2741Y ACAGCTATACTGC . 177 29 118 0 . 0 0 0 0 0 FPGS 2356 broad.mit.edu;bcgsc.ca 37 9 130572350 130572350 + Missense_Mutation SNP G G A novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . FPGS-90 NM_004957 exon13 c.G1252A p.D418N ACCGGGGACCGGG . 275 57 114 1 . 0 0 0 0 0 COL5A1 1289 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 137704528 137704528 + Silent SNP A A T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . COL5A1-524 NM_000093 exon48 c.A3822T p.G1274G AGGTGGAATAGGA . 131 33 91 1 . 0 0 0 0 0 NOXA1 10811 hgsc.bcm.edu 37 9 140317999 140317999 + Missense_Mutation SNP C C G rs112864733 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NOXA1-90 NM_006647 exon1 c.C18G p.D6E GGGGGACCTGGTG . 14 4 0 0 C|0.934;G|0.066 0 0 0 0 0 VCX 26609 bcgsc.ca 37 X 7811812 7811812 + Missense_Mutation SNP C C G rs144779201 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . VCX-22 NM_013452 exon3 c.C376G p.Q126E CTGAGTCAGGAGA . 147 7 200 0 C|0.996;G|0.004 0 0 0 0 0 MAGEE2 139599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 75003782 75003782 + Missense_Mutation SNP T T G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . MAGEE2-132 NM_138703 exon1 c.A1105C p.I369L CCTCAATCAGAGA . 53 11 79 0 . 0 0 0 0 0 VSIG1 340547 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107320488 107320488 + Missense_Mutation SNP G G C novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . VSIG1-132 NM_001170553 exon8 c.G1149C p.E383D CATCGAGCTGGAG . 112 36 176 0 . 0 0 0 0 0 RHOXF1 158800 broad.mit.edu;ucsc.edu 37 X 119249707 119249707 + Missense_Mutation SNP G G T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . RHOXF1-130 NM_139282 exon1 c.C66A p.S22R TGTGGGGCTTATT . 41 5 36 0 . 0 0 0 0 0 DCAF12L1 139170 hgsc.bcm.edu;broad.mit.edu 37 X 125685583 125685583 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DCAF12L1-132 NM_178470 exon1 c.G1009A p.D337N GCTGGTCCTGGCG . 180 11 223 0 . 0 0 0 0 0 DCAF12L1 139170 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 125685622 125685622 + Missense_Mutation SNP C C T novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . DCAF12L1-132 NM_178470 exon1 c.G970A p.G324S GGGAGCCCACGGC . 268 18 285 0 . 0 0 0 0 0 GPC3 2719 hgsc.bcm.edu;bcgsc.ca 37 X 132730533 132730535 + In_Frame_Del DEL TCT TCT - novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . GPC3-847 NM_001164617 exon8 c.1575_1577del p.525_526del CACTCATCTTCAT . 269 62 396 1 . 0 0 0 0 0 PLXNA3 55558 broad.mit.edu 37 X 153689643 153689643 + Missense_Mutation SNP G G A rs145244142 byfrequency TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . PLXNA3-132 NM_017514 exon3 c.G799A p.A267T ATGTGCGCGGGAG . 233 6 85 0 G|0.999;A|0.001 0 0 0 0 0 CELSR2 1952 hgsc.bcm.edu 37 1 109792735 109792736 + In_Frame_Ins INS - - CGC rs144034706 TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CELSR2-526 NM_001408 exon1 c.34_35insCGC p.T12delinsTP CTCCCAACGCCGC . 20 19 3 2 -|0.389;CGC|0.611 0 0 0 0 0 CRTC1 23373 broad.mit.edu 37 19 18856713 18856714 + Frame_Shift_Ins INS - - G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . CRTC1-1361 NM_001098482 exon4 c.372_373insG p.R124fs GGAGCGTGGCCGG . 351 10 66 0 . 0 0 0 0 0 LYPD5 284348 broad.mit.edu 37 19 44302693 44302694 + Frame_Shift_Ins INS - - CC novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . LYPD5-90 NM_001031749 exon4 c.431_432insGG p.D144fs CAGTCATCCTGGT . 95 11 45 0 . 0 0 0 0 0 SBK2 646643 hgsc.bcm.edu 37 19 56041209 56041210 + Frame_Shift_Ins INS - - G novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . SBK2-68 NM_001101401 exon4 c.938_939insC p.R313fs CTCCTTCGGGGGT . 58 19 8 2 . 0 0 0 0 0 NFIA 4774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 61554105 61554106 + Missense_Mutation DNP TC TC AT novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . NFIA-92 NM_001145512 exon3 c.C448T p.L150F TGTGTTCTTTCCA . 143 0 198 0 . 0 0 0 0 0 ZNF814 730051 hgsc.bcm.edu 37 19 58385798 58385799 + Missense_Mutation DNP CC CC TT novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_001144989 exon3 c.G959A p.G320E CTTTTCCCAGTGT . 100 7 35 0 . 0 0 0 0 0 SSPO 23145 hgsc.bcm.edu 37 7 149476671 149476672 + Silent DNP TG TG CT novel TCGA-P6-A5OH-01A-11D-A30A-10 TCGA-P6-A5OH-11A-01D-A30A-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 5632f8dc-6bed-4bbd-be97-3b2512028431 5f342e4b-0132-4834-8eb1-7654c0ddfdf2 . . NM_198455 exon10 c.G1122T . GCCCCTGGGGCTC . 313 0 180 0 . 0 0 0 0 0