Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AKR7L	246181	broad.mit.edu	37	1	19596124	19596124	+	RNA	SNP	C	C	T	rs2235794	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	AKR7L-90	.	.	.	.	CTGAGGCAGGGGA	.	231	7	373	1	C|0.341;T|0.659	41	41	0	0	0
LUZP1	7798	ucsc.edu;bcgsc.ca	37	1	23418153	23418153	+	Missense_Mutation	SNP	C	C	T	rs10799790	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LUZP1-90	NM_033631	exon4	c.G2602A	p.D868N	GCCTGTCCTTCAG	.	41	6	74	1	C|0.198;T|0.802	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	8	8	0	0	G|0.061;T|0.939	0	0	0	0	0
KCNQ4	9132	bcgsc.ca	37	1	41296828	41296828	+	Missense_Mutation	SNP	T	T	G	rs34287852	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KCNQ4-90	NM_004700	exon10	c.T1365G	p.H455Q	GCAGCATCTGGCA	.	197	8	315	4	T|0.858;G|0.142	0	0	0	0	0
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44685739	44685739	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DMAP1-226	NM_001034024	exon10	c.C1102T	p.R368X	GAGCTGCGAAGCG	.	83	27	117	0	.	37	29	8	0	0
IPP	3652	hgsc.bcm.edu;broad.mit.edu	37	1	46165768	46165768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IPP-91	NM_001145349	exon9	c.C1625G	p.S542C	CTGGAAGATCGAC	.	61	4	92	0	.	7	6	1	0	0
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	78958569	78958569	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTGFR-527	NM_000959	exon2	c.C141A	p.A47A	CCTTGCCATCGCC	.	84	60	139	0	.	0	0	0	0	0
ELTD1	64123	ucsc.edu	37	1	79404917	79404917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ELTD1-24	NM_022159	exon4	c.G352C	p.D118H	CATTATCTAAATG	.	95	1	183	0	.	15	13	2	0	0
EPS8L3	79574	bcgsc.ca	37	1	110302006	110302006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	EPS8L3-93	NM_133181	exon5	c.G259A	p.E87K	CCAGCTCCTCCTG	.	179	7	327	2	.	0	0	0	0	0
FLG	2312	ucsc.edu	37	1	152276598	152276598	+	Silent	SNP	G	G	A	rs12742178	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FLG-106	NM_002016	exon3	c.C10764T	p.H3588H	GTGCCCGTGACCG	.	114	53	221	32	G|0.963;A|0.037	0	0	0	0	0
KIRREL	55243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058193	158058193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KIRREL-91	NM_018240	exon8	c.G993T	p.W331C	TGTCTGGGTTGGG	.	207	42	192	1	.	3	3	0	0	0
ATP1A4	480	broad.mit.edu;bcgsc.ca	37	1	160141212	160141212	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ATP1A4-94	NM_144699	exon11	c.C1663T	p.L555L	GGAGGTCTGGGGG	.	148	6	135	0	.	0	0	0	0	0
SLAMF6	114836	broad.mit.edu;bcgsc.ca	37	1	160460476	160460476	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SLAMF6-228	NM_052931	exon5	c.647-1G>T	.	TAACATCTGAAAA	.	140	6	117	0	.	0	0	0	0	0
ITLN1	55600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160850441	160850441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ITLN1-96	NM_017625	exon6	c.C622T	p.P208S	CCACAGGGATCAC	.	168	80	131	0	.	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176564267	176564267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PAPPA2-548	NM_020318	exon3	c.G1527C	p.L509F	GGAATTGATCTCC	.	116	47	107	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	6	0	0	T|0.229;C|0.771	2	0	2	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179851685	179851685	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TOR1AIP1-153	NM_001267578	exon1	c.T48G	p.G16G	ATGGGGTGTGTAC	.	101	18	77	8	.	18	18	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181745248	181745248	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CACNA1E-95	NM_000721	exon38	c.G5151C	p.L1717L	CAACCTGTTTGTG	.	156	5	114	0	.	0	0	0	0	0
SOX13	9580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204093978	204093978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SOX13-514	NM_005686	exon13	c.G1585A	p.V529M	AGCTACGTGATCC	.	210	90	210	0	.	0	0	0	0	0
KCNH1	3756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210971042	210971042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KCNH1-94	NM_172362	exon9	c.G1723C	p.V575L	TGAACACCTTGCG	.	246	23	207	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	56	55	0	0	C|0.643;T|0.357	0	0	0	0	0
TSNAX-DISC1	0	bcgsc.ca	37	1	232098998	232098998	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	.	.	.	.	CCATTGCATTTTT	.	49	7	68	0	.	0	0	0	0	0
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248343508	248343508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR2M2-72	NM_001004688	exon1	c.T221A	p.I74N	TGCTCATCTGCAC	.	256	46	264	1	.	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	42	42	1	0	C|0.007;G|0.002;T|0.991	2	0	2	0	0
ALOX5	240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45878015	45878015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ALOX5-228	NM_000698	exon2	c.G235T	p.D79Y	CTGAATGACGACT	.	217	94	222	2	.	6	6	0	0	0
OGDHL	55753	bcgsc.ca	37	10	50950976	50950976	+	Missense_Mutation	SNP	G	G	A	rs11101224	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OGDHL-69	NM_018245	exon15	c.C1910T	p.T637M	TCCACCGTCCGGT	.	111	5	83	1	G|0.792;A|0.208	32	32	0	0	0
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106214282	106214282	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CCDC147-71	NM_001008723	exon18	c.G2613A	p.T871T	AATGACGTTCTAA	.	158	27	159	0	.	0	0	0	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111642322	111642322	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	XPNPEP1-94	NM_001167604	exon10	c.A909G	p.E303E	CCTGTATTCGGCT	.	89	14	84	2	.	27	20	7	0	0
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1031972	1031972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MUC6-23	NM_005961	exon3	c.C197T	p.T66M	TTGCACGTCCCCG	.	125	86	185	0	.	0	0	0	0	0
CARS	833	ucsc.edu	37	11	3028140	3028140	+	Silent	SNP	G	G	A	rs729662	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CARS-664	NM_001014437	exon19	c.C2118T	p.P706P	AAGCTCGGGCAGG	.	52	6	114	2	G|0.727;A|0.273	36	36	0	0	0
OR51S1	119692	bcgsc.ca	37	11	4870298	4870298	+	Silent	SNP	T	T	G	rs11601065	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR51S1-72	NM_001004758	exon1	c.A141C	p.A47A	TCCCAGTGCAGAG	.	165	7	226	2	T|0.828;G|0.172	0	0	0	0	0
OR52W1	120787	bcgsc.ca	37	11	6221214	6221214	+	Missense_Mutation	SNP	T	T	A	rs11040799	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR52W1-68	NM_001005178	exon1	c.T761A	p.L254Q	TCATTCTGGCCTT	.	60	5	133	0	T|0.402;A|0.598	0	0	0	0	0
CYB5R2	51700	bcgsc.ca	37	11	7694002	7694002	+	Missense_Mutation	SNP	G	G	A	rs61729556	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CYB5R2-90	NM_016229	exon2	c.C55T	p.P19S	GCAGCGGGTACTT	.	178	7	273	1	G|0.968;A|0.032	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu	37	11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	rs3812754		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MICALCL-91	NM_032867	exon3	c.A1411C	p.T471P	CCTCCTACAGCGG	.	5	5	2	0	A|0.649;C|0.351	0	0	0	0	0
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17485036	17485036	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ABCC8-91	NM_000352	exon4	c.G528C	p.V176V	GAGGATCACCAGC	.	101	21	142	0	.	0	0	0	0	0
OR4B1	119765	broad.mit.edu	37	11	48238646	48238646	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR4B1-72	NM_001005470	exon1	c.T285C	p.C95C	AGGCTGTCTGACT	.	75	3	121	0	.	0	0	0	0	0
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944120	55944120	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR5J2-115	NM_001005492	exon1	c.C27T	p.V9V	AGTTGTCACTGAG	.	78	23	146	0	.	0	0	0	0	0
RTN3	10313	bcgsc.ca	37	11	63449125	63449125	+	Missense_Mutation	SNP	C	C	A	rs11551944	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RTN3-91	NM_201428	exon1	c.C17A	p.A6E	CGTCGGCGGCCAC	.	63	5	46	0	C|0.903;A|0.097	42	42	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	9	9	0	0	G|0.005;C|0.995	202	0	202	0	0
ALDH3B2	222	bcgsc.ca	37	11	67432799	67432799	+	Silent	SNP	G	G	A	rs80147122	bycluster;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ALDH3B2-226	NM_001031615	exon7	c.C663T	p.R221R	GGCCACGCGGCTG	.	133	6	183	0	.	0	0	0	0	0
MYO7A	4647	bcgsc.ca	37	11	76868372	76868372	+	Silent	SNP	T	T	C	rs762667	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MYO7A-138	NM_001127179	exon8	c.T783C	p.G261G	GGAGGGTATGAGT	.	91	5	137	1	T|0.516;C|0.484	0	0	0	0	0
OR10G9	219870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123893785	123893785	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	OR10G9-92	NM_001001953	exon1	c.C66T	p.D22D	GCTGGACGCCCCA	.	231	12	370	0	.	0	0	0	0	0
OR8G5	219865	ucsc.edu	37	11	124135619	124135619	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_001005198	exon1	c.T897C	p.S299S	ATCATCTGTCAGC	.	158	25	199	16	.	0	0	0	0	0
CCND2	894	broad.mit.edu	37	12	4409090	4409090	+	Missense_Mutation	SNP	G	G	A	rs142170178	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CCND2-1271	NM_001759	exon5	c.G785A	p.R262H	AGTACCGTCAGGA	.	146	5	117	0	G|0.999;A|0.001	62	59	3	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40715839	40715839	+	Nonsense_Mutation	SNP	C	C	T	rs11564176	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRK2-533	NM_198578	exon36	c.C5173T	p.R1725X	TTAGAACGAGCAC	.	46	6	30	0	C|0.989;T|0.011	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49421629	49421629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MLL2-612	NM_003482	exon47	c.A14600G	p.Y4867C	AGGGTATAGCCAG	.	153	36	150	0	.	4	4	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	311	38	308	27	G|0.998;A|0.002	805	320	485	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	5	5	0	0	A|0.133;G|0.867	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KRT4-96	NM_002272	exon1	c.T240C	p.F80F	AGTGCCAAAGCCT	.	72	24	50	1	A|1.000;|0.000	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KRT4-96	NM_002272	exon1	c.C237T	p.G79G	GCCAAAGCCTCCA	.	69	21	52	1	.	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	80749522	80749522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_173591	exon46	c.C5573G	p.T1858S	CATGCACTGATAG	.	117	8	79	0	.	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124413963	124413963	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DNAH10-95	NM_207437	exon70	c.C12094T	p.Q4032X	GTGGTGCAGGAGA	.	239	101	188	0	.	0	0	0	0	0
NCOR2	9612	bcgsc.ca	37	12	124810065	124810065	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NCOR2-229	NM_006312	exon49	c.A7428C	p.P2476P	TGGGGGTGGGGAA	.	141	29	37	3	.	61	59	1	0	1
RIMBP2	23504	broad.mit.edu	37	12	130919325	130919325	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RIMBP2-142	NM_015347	exon11	c.2156delG	p.G719fs	GAGGCGCCCCTCC	.	63	9	66	0	.	0	0	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	7	7	0	0	C|0.873;T|0.127	5	0	5	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_032849	exon1	c.A175G	p.R59G	GTGGCCAGGCCCG	.	4	4	0	0	A|0.219;G|0.781	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	47	9	31	0	.	4	4	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZNF219-90	NM_001102454	exon3	c.698_703del	p.233_235del	GGGGTGGAGGCTG	.	35	27	1	1	.	0	0	0	0	0
AJUBA	84962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23450590	23450590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_032876	exon1	c.G886A	p.G296R	GGGCTCCGGCTTC	.	96	41	54	0	.	1	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ADCY4-93	NM_001198592	exon5	c.G663A	p.K221K	CTGGTGCTTCTTC	.	73	3	55	0	.	0	0	0	0	0
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48460977	48460977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MYEF2-523	NM_016132	exon2	c.G221A	p.S74N	TTCTTACTTCCTG	.	26	18	73	0	.	1	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75981976	75981976	+	Missense_Mutation	SNP	C	C	T	rs200493777		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CSPG4-229	NM_001897	exon3	c.G1430A	p.R477H	CCATGGCGTGCCC	.	167	5	254	0	C|0.999;T|0.001	4	4	0	0	0
SOLH	6650	hgsc.bcm.edu	37	16	599306	599306	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SOLH-523	NM_005632	exon6	c.G1677T	p.A559A	CCTGGCGGTGCTG	.	61	4	2	0	.	22	22	0	0	0
PRSS21	10942	hgsc.bcm.edu	37	16	2867326	2867326	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PRSS21-92	NM_144957	exon1	c.G57A	p.R19R	ACTCAGGAAGCCG	.	13	9	0	0	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	17	11	0	0	G|0.570;T|0.430	0	0	0	0	0
HS3ST2	9956	bcgsc.ca	37	16	22826339	22826339	+	Silent	SNP	A	A	G	rs208951	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HS3ST2-516	NM_006043	exon1	c.A408G	p.V136V	CCGAGTACACCCG	.	146	5	138	0	A|0.600;G|0.400	0	0	0	0	0
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22826384	22826384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HS3ST2-516	NM_006043	exon1	c.C453G	p.D151E	CTTTGACAGGAAC	.	150	51	125	0	.	2	2	0	0	0
SNX20	124460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50707759	50707759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SNX20-23	NM_182854	exon4	c.C509T	p.A170V	CGGATGGCGTAGA	.	30	6	18	0	.	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	8	8	0	0	G|0.001;A|0.999	1	0	1	0	0
SLC7A6	9057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68330375	68330375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SLC7A6-90	NM_003983	exon9	c.T1228G	p.Y410D	CAGCTCTACCTCC	.	94	33	60	0	.	7	5	2	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181855	81181855	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PKD1L2-92	.	.	.	.	CGACCCGGGGACG	.	96	3	85	0	.	2	2	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	5	5	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	21	16	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	20	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	13	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	16	13	0	0	.	0	0	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	13	12	1	0	G|0.645;A|0.355	28	15	13	0	0
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41008411	41008411	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	AOC3-516	NM_003734	exon4	c.C2136T	p.D712D	CTTTGACGAAGAC	.	108	80	203	0	.	14	14	0	0	0
CDC27	996	bcgsc.ca	37	17	45234303	45234303	+	Missense_Mutation	SNP	G	G	C	rs200611688		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CDC27-291	NM_001114091	exon7	c.C818G	p.A273G	AGAGCTGCTGGTC	.	22	7	43	0	.	4	4	0	0	0
AATK	9625	broad.mit.edu	37	17	79094110	79094110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	AATK-933	NM_001080395	exon11	c.G3626T	p.S1209I	AGCAGGCTGCGCA	.	179	8	68	2	.	6	6	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	9	7	0	0	C|0.850;T|0.150	0	0	0	0	0
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5397119	5397119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	EPB41L3-95	NM_012307	exon18	c.C2779A	p.Q927K	CCTCTTGTCGCTC	.	29	21	53	0	.	22	6	16	0	0
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	8069961	8069961	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTPRM-228	NM_001105244	exon8	c.C1410T	p.S470S	GGAAAGCCAAGAA	.	91	7	146	0	.	19	18	1	0	0
MPPE1	65258	broad.mit.edu	37	18	11885772	11885772	+	Missense_Mutation	SNP	G	G	T	rs73945269	byfrequency;alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MPPE1-90	NM_023075	exon10	c.C911A	p.T304K	CTGTGCGTGTGGC	.	96	3	89	0	G|0.996;A|0.004	35	35	0	0	0
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28934939	28934939	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DSG1-519	NM_001942	exon15	c.T2780A	p.I927N	GAGTAATCCAACC	.	161	102	344	1	.	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319098	31319098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ASXL3-49	NM_030632	exon11	c.C1730A	p.S577Y	GGTCATCTTCTCT	.	39	12	60	0	.	0	0	0	0	0
TSHZ1	10194	bcgsc.ca	37	18	72998268	72998268	+	Silent	SNP	T	T	C	rs3744909	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TSHZ1-90	NM_005786	exon2	c.T771C	p.D257D	GGAGGATGCCCAG	.	159	6	250	3	T|0.676;C|0.324	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752545	76752545	+	Missense_Mutation	SNP	C	C	T	rs191414199		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SALL3-155	NM_171999	exon2	c.C554T	p.A185V	AGGGCGCGCGCGC	.	6	4	0	0	C|0.967;T|0.033	0	0	0	0	0
POLRMT	5442	broad.mit.edu	37	19	622193	622193	+	Missense_Mutation	SNP	C	C	A	rs201211645		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	POLRMT-92	NM_005035	exon9	c.G1807T	p.V603F	CGGGGACAAGCCG	.	46	4	44	0	.	28	28	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	18	12	0	0	C|0.766;T|0.234	5	1	4	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	19	19	0	0	A|0.591;G|0.409	10	0	10	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_021231	exon9	c.C1496T	p.A499V	GGCGCCGCGTCCT	.	4	4	0	0	G|0.535;A|0.465	2	0	2	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9047465	9047465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MUC16-566	NM_024690	exon5	c.C34166T	p.S11389L	AAATCTGAAGTGG	.	176	15	181	0	.	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	29	8	1	0	A|0.873;G|0.127	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	9	9	0	0	G|0.540;T|0.460	0	0	0	0	0
LRP3	4037	ucsc.edu	37	19	33697629	33697629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRP3-92	NM_002333	exon6	c.G1715A	p.S572N	TCTACAGTGCGTC	.	65	4	78	0	.	2	2	0	0	0
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676152	37676152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZNF585B-91	NM_152279	exon5	c.G2287T	p.V763F	GATGAACACTGAA	.	160	61	156	0	.	7	4	3	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	25	8	0	0	T|0.545;C|0.455	0	0	0	0	0
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39899249	39899249	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFP36-227	NM_003407	exon2	c.C909T	p.P303P	CTCTCCCGTCTTC	.	48	21	59	0	.	110	110	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	27	27	0	0	C|0.804;T|0.196	28	1	27	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	30	15	3	0	C|0.254;G|0.746	0	0	0	0	0
ALDH16A1	126133	hgsc.bcm.edu	37	19	49964883	49964883	+	Silent	SNP	C	C	T	rs142557990		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ALDH16A1-91	NM_001145396	exon6	c.C585T	p.T195T	CTGCACCGTGGTG	.	35	15	1	0	C|0.997;T|0.003	6	1	5	0	0
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50666417	50666417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IZUMO2-90	NM_152358	exon1	c.G35T	p.G12V	CCCAAGCCCGAGA	.	117	10	46	0	.	0	0	0	0	0
LILRB4	11006	bcgsc.ca	37	19	55175740	55175740	+	Silent	SNP	C	C	T	rs3745871	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LILRB4-93	NM_006847	exon4	c.C459T	p.F153F	CACTTTCCTTCTG	.	172	6	180	2	C|0.609;N|0.000	6	6	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	5	4	0	0	C|0.719;T|0.281	4	0	4	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	8	8	0	0	A|0.003;G|0.997	0	0	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26540927	26540927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GPR113-94	NM_001145168	exon2	c.G243C	p.Q81H	CATTGTCTGGCCC	.	64	36	97	0	.	0	0	0	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856389	54856389	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SPTBN1-140	NM_003128	exon14	c.G2118A	p.A706A	GATCGCGGAGGAG	.	94	3	146	0	.	6	6	0	0	0
TIA1	7072	broad.mit.edu	37	2	70443366	70443366	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TIA1-90	NM_022173	exon10	c.T738C	p.F246F	ATCTGGAAAGACT	.	78	6	83	1	.	17	17	0	0	0
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77745739	77745739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRTM4-94	NM_024993	exon3	c.A1256T	p.H419L	GAAACATGCTCAT	.	36	8	77	0	.	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	10	10	0	0	A|0.029;G|0.971	2	0	2	0	0
STK36	27148	bcgsc.ca	37	2	219563496	219563496	+	Silent	SNP	T	T	C	rs58753698	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	STK36-1004	NM_015690	exon26	c.T3229C	p.L1077L	CCACTGTTGACCT	.	122	5	184	1	T|0.946;C|0.054	12	12	0	0	0
GAL3ST2	64090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	242742905	242742905	+	Missense_Mutation	SNP	C	C	T	rs143165919		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GAL3ST2-90	NM_022134	exon4	c.C521T	p.P174L	CCTCGCCGCGGAC	.	257	72	308	0	C|1.000;T|0.000	0	0	0	0	0
FAM209B	388799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55108589	55108589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_001013646	exon1	c.G192T	p.L64F	GCTTTTGTTTGCT	.	264	46	251	2	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	4	4	0	0	G|0.826;C|0.174	0	0	0	0	0
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32589228	32589228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RFPL2-91	NM_006605	exon1	c.C34A	p.L12I	GTGAAAGCCTGTT	.	107	61	227	0	.	0	0	0	0	0
APOL2	23780	bcgsc.ca	37	22	36623920	36623920	+	Missense_Mutation	SNP	G	G	A	rs7285167	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	APOL2-90	NM_030882	exon5	c.C544T	p.R182C	AGTTGCGGGCTTG	.	67	4	74	0	G|0.885;A|0.115	24	24	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	21	20	0	0	A|0.354;G|0.646	0	0	0	0	0
ANKRD54	129138	broad.mit.edu	37	22	38228644	38228644	+	Silent	SNP	C	C	T	rs143173080	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ANKRD54-68	NM_138797	exon7	c.G828A	p.Q276Q	GCTCACCTGCTCT	.	50	3	68	1	C|0.998;T|0.002	0	0	0	0	0
SGSM3	27352	ucsc.edu	37	22	40802191	40802191	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SGSM3-494	NM_015705	exon9	c.G924T	p.V308V	CCGGGTGCTGTTC	.	83	12	92	9	.	17	16	1	0	0
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13368936	13368936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NUP210-256	NM_024923	exon32	c.G4288C	p.D1430H	AGTCGTCTCTAGG	.	216	66	219	0	.	0	0	0	0	0
ACVR2B	93	broad.mit.edu	37	3	38519900	38519900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ACVR2B-942	NM_001106	exon5	c.G557T	p.G186V	TGGTGGGCCTGAA	.	68	5	75	2	.	2	2	0	0	0
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45132893	45132893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CDCP1-117	NM_022842	exon7	c.A1765T	p.T589S	AGAAAGTCAGGCA	.	119	44	110	0	.	1	1	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GPX1-68	.	.	.	.	GACTGGGCCGCCG	.	74	37	12	0	.	0	0	0	0	0
STAB1	23166	ucsc.edu	37	3	52546452	52546452	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	STAB1-139	NM_015136	exon27	c.G2979T	p.R993R	CTTCCGGGTAAGG	.	39	4	35	0	.	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	21	14	0	0	T|0.749;G|0.251	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	10	10	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	11	11	0	0	G|0.252;C|0.748	0	0	0	0	0
ADCY5	111	broad.mit.edu	37	3	123166708	123166708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ADCY5-94	NM_183357	exon1	c.C685A	p.L229M	GGTACAGCCGCTC	.	214	16	119	1	.	3	3	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	18	12	1	0	G|0.797;A|0.203	3	1	2	0	0
IL1RAP	3556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190321957	190321957	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	IL1RAP-91	NM_001167929	exon3	c.C105T	p.I35I	GCAAATCCAAGTG	.	168	30	130	0	.	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TNK2-957	NM_001010938	exon13	c.C1953T	p.F651F	CTCACCGAAGTCG	.	20	7	0	0	G|0.936;A|0.064	19	16	3	0	0
ZNF718	255403	bcgsc.ca	37	4	155163	155163	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_001039127	exon4	c.G688T	p.E230X	AAGTGTGAAGAAT	.	42	4	45	0	.	3	3	0	0	0
CRIPAK	285464	ucsc.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	79	10	25	1	C|1.000;|0.000	23	15	8	0	0
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2306391	2306391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZFYVE28-93	NM_020972	exon8	c.G1676T	p.C559F	AGAAGGCAGTTGG	.	125	16	116	0	.	4	4	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	9	9	0	0	G|0.440;A|0.560	0	0	0	0	0
PDGFRA	5156	bcgsc.ca	37	4	55143577	55143577	+	Silent	SNP	G	G	A	rs10028020	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PDGFRA-9497	NM_006206	exon13	c.G1809A	p.A603A	TGGAGCGTTTGGG	.	138	5	150	1	A|0.170;C|0.000;G|0.830	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662309	77662309	+	Silent	SNP	C	C	T	rs344143	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SHROOM3-93	NM_020859	exon5	c.C2983T	p.L995L	GGCGACCTGGCCA	.	21	16	1	0	C|0.604;T|0.396	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DSPP-90	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	520	56	784	8	.	0	0	0	0	0
TMEM155	132332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122681582	122681582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TMEM155-90	NM_152399	exon6	c.C260G	p.P87R	CTCTGTGGGCTTC	.	100	22	121	0	.	0	0	0	0	0
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186535995	186535995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SORBS2-91	NM_001270771	exon20	c.C3173T	p.S1058L	CTCAGTGACAGCT	.	91	10	96	0	.	0	0	0	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65054536	65054536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NLN-90	NM_020726	exon2	c.G184C	p.E62Q	AGAACTGAGGAGC	.	194	65	168	0	.	7	6	1	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559493	140559493	+	Silent	SNP	C	C	T	rs34866056		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PCDHB8-131	NM_019120	exon1	c.C1878T	p.R626R	GGTGCGCACCGCC	.	144	11	7	0	.	97	78	19	0	0
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140590650	140590650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PCDHB12-93	NM_018932	exon1	c.G2171A	p.R724H	TCGGTCGCTGCTC	.	111	19	63	0	.	5	4	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149441082	149441082	+	Silent	SNP	G	G	T	rs200536087		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CSF1R-2640	NM_005211	exon13	c.C1830A	p.V610V	CTTCAGGACAGCA	.	85	3	51	0	G|0.999;T|0.000	37	37	0	0	0
HUS1B	135458	hgsc.bcm.edu	37	6	656555	656555	+	Missense_Mutation	SNP	G	G	T	rs1766848	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HUS1B-227	NM_148959	exon1	c.C390A	p.H130Q	CAGATCGTGCACC	.	34	19	0	0	G|0.938;T|0.062	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313078	1313078	+	Missense_Mutation	SNP	G	G	A	rs78460560		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FOXQ1-226	NM_033260	exon1	c.G139A	p.A47T	GACTGCGCGGCCA	.	5	4	0	0	G|0.763;A|0.237	0	0	0	0	0
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10586905	10586905	+	Missense_Mutation	SNP	G	G	A	rs55795227		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GCNT2-92	NM_145655	exon1	c.G683A	p.R228Q	TTAAGCGAACTAA	.	194	31	169	1	.	0	0	0	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12125518	12125518	+	Missense_Mutation	SNP	G	G	C	rs201245007	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HIVEP1-139	NM_002114	exon4	c.G5490C	p.L1830F	TAATTTGACAAAT	.	120	38	117	0	G|0.999;A|0.000	3	2	1	0	0
RANBP9	10048	bcgsc.ca	37	6	13711279	13711279	+	Silent	SNP	A	A	G	rs6905991	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	RANBP9-414	NM_005493	exon1	c.T459C	p.R153R	GTAGAGACGCTTC	.	127	5	87	0	A|0.575;C|0.000;G|0.424;T|0.000	7	7	0	0	0
NHLRC1	378884	hgsc.bcm.edu	37	6	18122526	18122526	+	Silent	SNP	A	A	G	rs115931931	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NHLRC1-90	NM_198586	exon1	c.T312C	p.H104H	GGCGCGATGGGCG	.	11	11	0	0	A|0.885;G|0.115	2	0	2	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	15	8	0	0	C|0.673;A|0.327	8	4	4	0	0
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44217213	44217213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	HSP90AB1-658	NM_007355	exon3	c.A247G	p.T83A	GAACGTACCCTGA	.	96	8	100	0	.	1776	1367	393	3	13
SMAP1	60682	broad.mit.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SMAP1-90	NM_001044305	exon6	c.506delA	p.E169fs	AAAAGGAAAAAAA	.	129	7	87	0	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	20	19	0	0	T|0.089;G|0.911	0	0	0	0	0
ARHGAP18	93663	ucsc.edu	37	6	129959611	129959611	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ARHGAP18-230	NM_033515	exon3	c.G480A	p.R160R	TTTTTTCCTCAAG	.	159	1	92	0	.	15	13	2	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	4	4	0	0	T|0.000;G|1.000	9	0	9	0	0
VNN3	55350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133049936	133049936	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	VNN3-90	.	.	.	.	TGTTGTATTGGTA	.	208	22	150	0	.	0	0	0	0	0
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	159652989	159652989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FNDC1-138	NM_032532	exon11	c.C1445A	p.P482H	CTTCTCCCAGAGC	.	153	11	94	0	.	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu;bcgsc.ca	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	77	22	12	0	T|0.654;G|0.346	2	1	1	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TNRC18-46	NM_001080495	exon5	c.C1938T	p.G646G	GCCGCCGCCCGCT	.	56	34	2	0	G|0.797;A|0.203	6	4	2	0	0
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6029443	6029443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PMS2-1083	NM_000535	exon10	c.C1132A	p.L378M	CATCCAGCAGTGG	.	93	21	133	1	.	4	2	2	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	26	11	0	0	G|0.456;C|0.544	4	2	2	0	0
ZNF853	54753	hgsc.bcm.edu	37	7	6662086	6662086	+	Silent	SNP	G	G	C	rs9770042	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_017560	exon3	c.G1464C	p.G488G	CTGCGGGGAGTGC	.	20	7	0	0	G|0.869;C|0.131	1	1	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	14	13	0	0	C|0.329;G|0.671	24	0	24	0	0
NRCAM	4897	bcgsc.ca	37	7	107872816	107872816	+	Silent	SNP	G	G	A	rs2072546	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	NRCAM-156	NM_001037132	exon4	c.C381T	p.N127N	GCGTTCGTTCCTT	.	171	6	145	0	G|0.834;A|0.166	3	3	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PODXL-136	NM_001018111	exon1	c.T64C	p.S22P	GCGACGACGGCAG	.	33	7	1	0	.	2	2	0	0	0
KIAA1549	57670	broad.mit.edu;bcgsc.ca	37	7	138602801	138602801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KIAA1549-369	NM_020910	exon2	c.C1571G	p.A524G	CCGTGGGCAGGGG	.	103	5	113	0	.	3	3	0	0	0
KLRG2	346689	broad.mit.edu	37	7	139138349	139138349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KLRG2-90	NM_198508	exon5	c.C1214A	p.A405D	CCCTTGGCACAGA	.	60	4	41	0	.	0	0	0	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	55	36	1	0	G|0.870;A|0.130	6	5	1	0	0
LRRC61	65999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034045	150034045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LRRC61-90	NM_023942	exon2	c.C95T	p.S32F	TGGAGTCCATCCT	.	93	16	106	0	.	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750467	8750467	+	Silent	SNP	A	A	G	rs1062988		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	MFHAS1-90	NM_004225	exon1	c.T102C	p.L34L	GGCGGTAAGCGTG	.	11	5	1	0	A|0.857;G|0.143	0	0	0	0	0
XKR6	286046	broad.mit.edu	37	8	10755519	10755519	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	XKR6-92	NM_173683	exon3	c.T1869A	p.I623I	ATATCGAATGCCT	.	172	5	148	3	.	0	0	0	0	0
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25364323	25364323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CDCA2-90	NM_152562	exon15	c.G2141T	p.C714F	TTTCTTGTGCTTC	.	22	7	22	0	.	0	0	0	0	0
C8orf34	116328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69552682	69552682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	C8orf34-153	NM_052958	exon8	c.C1177T	p.R393C	CAAGGCCGTCCTA	.	80	25	72	0	.	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	4	4	0	0	C|0.434;G|0.566	3	0	3	0	0
TRIB1	10221	hgsc.bcm.edu	37	8	126443348	126443348	+	Silent	SNP	C	C	T	rs2385113	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TRIB1-358	NM_025195	exon1	c.C204T	p.S68S	CTGCAGCCCGCAG	.	5	5	0	0	C|0.640;T|0.360	0	0	0	0	0
ST3GAL1	6482	ucsc.edu;bcgsc.ca	37	8	134474162	134474162	+	Missense_Mutation	SNP	T	T	C	rs146292003	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ST3GAL1-90	NM_173344	exon9	c.A805G	p.T269A	TGCCGGTAGATGG	.	154	54	195	4	T|1.000;G|0.000	7	7	0	0	0
JRK	8629	broad.mit.edu;bcgsc.ca	37	8	143746396	143746396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	.	NM_003724	exon2	c.A1082C	p.D361A	ATGGCATCGTTCA	.	152	5	110	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	10	0	0	A|0.118;G|0.882	2	0	2	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	26	26	5	0	G|0.246;A|0.754	21	0	21	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	17	17	0	0	C|0.976;G|0.024	58	0	58	0	0
CNTNAP3	79937	hgsc.bcm.edu	37	9	39132974	39132974	+	Silent	SNP	G	G	T	rs149597063	by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	CNTNAP3-91	NM_033655	exon13	c.C2035A	p.R679R	CCAGCCGCTGCTC	.	6	5	0	0	G|0.961;T|0.039	2	2	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88967902	88967902	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ZCCHC6-92	NM_024617	exon2	c.T213A	p.A71A	GGAAACAGCACAT	.	136	57	153	0	.	6	4	2	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	4	4	0	0	A|0.235;G|0.765	4	0	4	0	0
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136338637	136338637	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	SLC2A6-90	NM_017585	exon8	c.C1122T	p.G374G	TTCCAGGCCCGCA	.	143	67	159	0	.	1	1	0	0	0
LHX3	8022	hgsc.bcm.edu	37	9	139094805	139094805	+	Silent	SNP	C	C	T	rs2274116	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	LHX3-91	NM_014564	exon1	c.G81A	p.A27A	CAGGTCCGCCCTC	.	4	4	0	0	C|0.842;T|0.158	0	0	0	0	0
DCAF8L2	347442	bcgsc.ca	37	X	27766776	27766776	+	Silent	SNP	G	G	A	rs45553337	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	DCAF8L2-42	NM_001136533	exon1	c.G1764A	p.T588T	CGTGACGCAGAGA	.	241	9	228	2	G|0.816;A|0.184	0	0	0	0	0
GLUD2	2747	hgsc.bcm.edu	37	X	120181641	120181641	+	Missense_Mutation	SNP	G	G	A	rs191769566		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	GLUD2-131	NM_012084	exon1	c.G103A	p.G35R	GGCCGCGGACAGC	.	27	27	0	0	G|0.932;A|0.068	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGCAGC	p.P81delinsQQQQP	TGCGGTGGCTGCT	.	71	24	61	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	35	0	1	0	.	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	16	10	0	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	6	0	1	0	T|0.470;C|0.530	0	0	0	0	0
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12893459	12893460	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	ARHGAP44-90	NM_014859	exon21	c.A2429C	p.E810S	ACTCGGAGGAGGA	.	69	0	136	0	.	0	0	0	0	0
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132545983	132545984	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	.	FSTL4-91	NM_015082	exon14	c.G1615T	p.G539Y	CCACACCTATGGA	.	150	0	113	0	.	0	0	0	0	0