Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABCB10 0 genome.wustl.edu 37 1 229683401 229683401 + Missense_Mutation SNP G G C TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 1 229683401 229683401 G C SNP ABCB10 ENST00000344517 human ensembl 69_37n -1 known missense c.766 p.L256V 0.817 pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1 pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1 - no_errors ABCB10 HGNC ENSG00000135776 132 0 0.00 119 19 13.77 - - - AHNAK 0 genome.wustl.edu 37 11 62295540 62295540 + Missense_Mutation SNP T T C TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 11 62295540 62295540 T C SNP AHNAK ENST00000378024 human ensembl 69_37n -1 known missense c.6349 p.I2117V 1.000 NULL superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors AHNAK HGNC ENSG00000124942 197 0 0.00 287 55 16.08 - - - CARD9 0 genome.wustl.edu 37 9 139266359 139266359 + Missense_Mutation SNP T T C TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 9 139266359 139266359 T C SNP CARD9 ENST00000371732 human ensembl 69_37n -1 known missense c.172 p.K58E 1.000 pfam_CARD,superfamily_DEATH-like,pfscan_CARD pfam_CARD,superfamily_DEATH-like,pfscan_CARD - no_errors CARD9 HGNC ENSG00000187796 30 0 0.00 46 6 11.54 - - - CMYA5 0 genome.wustl.edu 37 5 79032395 79032395 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 5 79032395 79032395 G A SNP CMYA5 ENST00000446378 human ensembl 69_37n +1 known missense c.7807 p.A2603T 0.007 NULL pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3 - no_errors CMYA5 HGNC ENSG00000164309 120 0 0.00 85 14 14.14 - - - CPT1B 0 genome.wustl.edu 37 22 51008742 51008742 + Missense_Mutation SNP C C T TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 22 51008742 51008742 C T SNP CPT1B ENST00000312108 human ensembl 69_37n -1 known missense c.2122 p.A708T 0.801 pfam_Carn_acyl_trans pfam_Carn_acyl_trans - no_errors CPT1B HGNC ENSG00000205560 66 0 0.00 36 14 28.00 - - - EIF2C2 0 genome.wustl.edu 37 8 141561427 141561427 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 8 141561427 141561427 G A SNP EIF2C2 ENST00000220592 human ensembl 69_37n -1 known missense c.1378 p.R460C 1.000 NULL pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi - no_errors EIF2C2 HGNC ENSG00000123908 37 0 0.00 40 7 14.89 - - - FAM179B 0 genome.wustl.edu 37 14 45431733 45431733 + Nonsense_Mutation SNP C C T TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 14 45431733 45431733 C T SNP FAM179B ENST00000361577 human ensembl 69_37n +1 known nonsense c.109 p.R37* 0.185 NULL superfamily_ARM-type_fold - no_errors FAM179B HGNC ENSG00000198718 48 0 0.00 33 9 21.43 - - - FAM20C 0 genome.wustl.edu 37 7 299785 299785 + Missense_Mutation SNP G G C TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 7 299785 299785 G C SNP FAM20C ENST00000313766 human ensembl 69_37n +1 known missense c.1594 p.D532H 1.000 pfam_DUF1193 pfam_DUF1193 - no_errors FAM20C HGNC ENSG00000177706 13 0 0.00 22 8 26.67 - - - GATA3 0 genome.wustl.edu 37 10 8111433 8111434 + Splice_Site DEL CA CA - TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 10 8111433 8111434 CA - DEL GATA3 ENST00000379328 human ensembl 69_37n +1 known splice_site_del c.925-3_925-2 e4-2 1.000:1.000 - - - no_errors GATA3 HGNC ENSG00000107485 94 0 0 72 39 35.14 - - - GNE 0 genome.wustl.edu 37 9 36217480 36217480 + Missense_Mutation SNP C C T TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 9 36217480 36217480 C T SNP GNE ENST00000396594 human ensembl 69_37n -1 known missense c.2144 p.R715H 1.000 NULL pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase - no_errors GNE HGNC ENSG00000159921 118 0 0.00 111 22 16.54 - - - GOLGB1 0 genome.wustl.edu 37 3 121415242 121415242 + Missense_Mutation SNP C C A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 3 121415242 121415242 C A SNP GOLGB1 ENST00000340645 human ensembl 69_37n -1 known missense c.4113 p.Q1371H 0.961 NULL superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo - no_errors GOLGB1 HGNC ENSG00000173230 166 0 0.00 151 34 18.28 - - - HS2ST1 0 genome.wustl.edu 37 1 87549897 87549897 + Missense_Mutation SNP A A G TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 1 87549897 87549897 A G SNP HS2ST1 ENST00000370550 human ensembl 69_37n +1 known missense c.384 p.I128M 1.000 pfam_Sulfotransferase pfam_Sulfotransferase - no_errors HS2ST1 HGNC ENSG00000153936 190 1 0.52 119 19 13.77 - - - LRBA 0 genome.wustl.edu 37 4 151223818 151223818 + Missense_Mutation SNP T T C TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 4 151223818 151223818 T C SNP LRBA ENST00000357115 human ensembl 69_37n -1 known missense c.8009 p.Y2670C 1.000 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom - no_errors LRBA HGNC ENSG00000198589 191 0 0.00 92 18 16.36 - - - PCDHA12 0 genome.wustl.edu 37 5 140256806 140256806 + Silent SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 5 140256806 140256806 G A SNP PCDHA12 ENST00000398631 human ensembl 69_37n +1 known silent c.1749 p.R583 0.000 superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA12 HGNC ENSG00000251664 78 0 0.00 114 28 19.72 - - - RNA5-8SP6 0 genome.wustl.edu 37 Y 10037843 10037843 + RNA SNP C C T TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 Y 10037843 10037843 C T SNP RNA5-8SP6 ENST00000515896 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors RNA5-8SP6 HGNC ENSG00000251705 15 0 0.00 25 7 21.88 - - - ROBO1 0 genome.wustl.edu 37 3 78719385 78719385 + Missense_Mutation SNP C C G TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 3 78719385 78719385 C G SNP ROBO1 ENST00000464233 human ensembl 69_37n -1 known missense c.1409 p.G470A 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors ROBO1 HGNC ENSG00000169855 46 0 0.00 59 12 16.90 - - - SNTA1 0 genome.wustl.edu 37 20 31996318 31996318 + Missense_Mutation SNP C C A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 20 31996318 31996318 C A SNP SNTA1 ENST00000217381 human ensembl 69_37n -1 known missense c.1513 p.A505S 1.000 NULL pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology - no_errors SNTA1 HGNC ENSG00000101400 109 0 0.00 84 19 18.45 - - - SYT16 0 genome.wustl.edu 37 14 62536500 62536500 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 14 62536500 62536500 G A SNP SYT16 ENST00000446982 human ensembl 69_37n +1 known missense c.703 p.G235R 0.023 NULL NULL - no_errors SYT16 HGNC ENSG00000139973 133 0 0.00 117 19 13.97 - - - SYT5 0 genome.wustl.edu 37 19 55690340 55690340 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 19 55690340 55690340 G A SNP SYT5 ENST00000354308 human ensembl 69_37n -1 known missense c.70 p.H24Y 0.568 NULL pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom - no_errors SYT5 HGNC ENSG00000129990 43 0 0.00 34 6 15.00 - - - TMEM132D 0 genome.wustl.edu 37 12 129569107 129569107 + Silent SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 12 129569107 129569107 G A SNP TMEM132D ENST00000422113 human ensembl 69_37n -1 known silent c.1584 p.I528 0.004 NULL NULL - no_errors TMEM132D HGNC ENSG00000151952 79 0 0.00 73 15 17.05 - - - TTK 0 genome.wustl.edu 37 6 80746264 80746264 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 6 80746264 80746264 G A SNP TTK ENST00000369798 human ensembl 69_37n +1 known missense c.1997 p.G666E 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors TTK HGNC ENSG00000112742 337 0 0.00 178 33 15.64 - - - TUBA1C 0 genome.wustl.edu 37 12 49666122 49666122 + Missense_Mutation SNP G G T TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 12 49666122 49666122 G T SNP TUBA1C ENST00000301072 human ensembl 69_37n +1 known missense c.462 p.M154I 1.000 pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin - no_errors TUBA1C HGNC ENSG00000167553 206 1 0.48 139 31 18.24 - - - VWA3A 0 genome.wustl.edu 37 16 22143005 22143005 + Missense_Mutation SNP G G A TCGA-A2-A0CV-01A-31D-A10Y-09 TCGA-A2-A0CV-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 7d4e8176-424e-41d9-ba1c-48feff2d2350 16 22143005 22143005 G A SNP VWA3A ENST00000299840 human ensembl 69_37n +1 known missense c.655 p.A219T 0.030 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region VWA3A HGNC ENSG00000175267 55 0 0.00 64 14 17.95 - - -