Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABCC11 0 genome.wustl.edu 37 16 48204014 48204014 + Splice_Site SNP A A C TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 16 48204014 48204014 A C SNP ABCC11 ENST00000356608 human ensembl 69_37n -1 known splice_site c.3891+2 e27+2 1.000 - - - no_errors ABCC11 HGNC ENSG00000121270 79 0 0.00 36 6 14.29 - - - ARHGAP21 0 genome.wustl.edu 37 10 24923969 24923969 + Missense_Mutation SNP C C A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 10 24923969 24923969 C A SNP ARHGAP21 ENST00000396432 human ensembl 69_37n -1 known missense c.332 p.G111V 1.000 pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom - no_errors ARHGAP21 HGNC ENSG00000107863 127 0 0.00 200 26 11.50 - - - EAF1 0 genome.wustl.edu 37 3 15469355 15469355 + Silent SNP G G A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 3 15469355 15469355 G A SNP EAF1 ENST00000396842 human ensembl 69_37n +1 known silent c.69 p.E23 1.000 pfam_Tscrpt_elong_fac_Eaf_N pfam_Tscrpt_elong_fac_Eaf_N - no_errors EAF1 HGNC ENSG00000144597 35 0 0.00 51 6 10.53 - - - ENSG00000211459 0 genome.wustl.edu 37 MT 981 981 + RNA SNP C C A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b MT 981 981 C A SNP ENSG00000211459 ENST00000389680 human ensembl 69_37n +1 known rna NULL NULL NULL - - - no_errors J01415.24 Clone_based_ensembl_gene ENSG00000211459 16 0 0.00 42 8 16.00 - - - ENSG00000244758 0 genome.wustl.edu 37 7 19834 19834 + RNA SNP C C G TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 7 19834 19834 C G SNP ENSG00000244758 ENST00000480075 human ensembl 69_37n -1 known rna NULL NULL 0.002 - - - no_errors AC093627.6 Clone_based_vega_gene ENSG00000244758 48 0 0.00 31 6 16.22 - - - FANCE 0 genome.wustl.edu 37 6 35423973 35423973 + Missense_Mutation SNP G G A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 6 35423973 35423973 G A SNP FANCE ENST00000229769 human ensembl 69_37n +1 known missense c.698 p.R233K 0.000 NULL pfam_Fanconi_anaemia_gr_E_prot_C - no_errors FANCE HGNC ENSG00000112039 114 0 0.00 54 10 15.62 - - - PEX11B 0 genome.wustl.edu 37 1 145522575 145522575 + Missense_Mutation SNP A A G TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 1 145522575 145522575 A G SNP PEX11B ENST00000369306 human ensembl 69_37n +1 known missense c.436 p.M146V 1.000 pfam_PEX11 pfam_PEX11 - no_errors PEX11B HGNC ENSG00000131779 145 0 0.00 80 12 13.04 - - - PRAMEF7 0 genome.wustl.edu 37 1 12980232 12980232 + Silent SNP G G A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 1 12980232 12980232 G A SNP PRAMEF7 ENST00000330881 human ensembl 69_37n +1 known silent c.1424 p.*475 0.000 NULL NULL - no_errors PRAMEF7 HGNC ENSG00000204510 91 0 0.00 32 4 11.11 - - - RNASEH2A 0 genome.wustl.edu 37 19 12917877 12917877 + Silent SNP G G A TCGA-A2-A0ST-01A-12D-A099-09 TCGA-A2-A0ST-10A-01D-A099-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx dd669f44-f64d-4afc-a5ac-5f7769d1db43 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b 19 12917877 12917877 G A SNP RNASEH2A ENST00000221486 human ensembl 69_37n +1 known silent c.183 p.E61 1.000 pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA - no_errors RNASEH2A HGNC ENSG00000104889 110 0 0.00 62 10 13.89 - - -