Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANGPT1 0 genome.wustl.edu 37 8 108297075 108297075 + Missense_Mutation SNP C C A TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 8 108297075 108297075 C A SNP ANGPT1 ENST00000517746 human ensembl 69_37n -1 known missense c.1040 p.G347V 1.000 pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C - no_errors ANGPT1 HGNC ENSG00000154188 102 0 0.00 80 34 29.57 - - - ANKRD32 0 genome.wustl.edu 37 5 94027917 94027917 + Missense_Mutation SNP C C T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 5 94027917 94027917 C T SNP ANKRD32 ENST00000265140 human ensembl 69_37n +1 known missense c.2651 p.S884L 1.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD32 HGNC ENSG00000133302 79 0 0.00 71 38 34.86 - - - C4orf29 0 genome.wustl.edu 37 4 128951784 128951784 + Missense_Mutation SNP G G C TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 4 128951784 128951784 G C SNP C4orf29 ENST00000398965 human ensembl 69_37n +1 known missense c.1198 p.G400R 1.000 pfam_DUF2048 pfam_DUF2048 - no_errors C4orf29 HGNC ENSG00000164074 99 0 0.00 90 12 11.76 - - - CKAP2L 0 genome.wustl.edu 37 2 113514535 113514535 + Missense_Mutation SNP G G T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 2 113514535 113514535 G T SNP CKAP2L ENST00000302450 human ensembl 69_37n -1 known missense c.413 p.P138H 0.017 NULL NULL - no_errors CKAP2L HGNC ENSG00000169607 174 0 0.00 128 76 37.25 - - - DIAPH1 0 genome.wustl.edu 37 5 140903779 140903787 + In_Frame_Del DEL CACCTGTCT CACCTGTCT - TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 CACCTGTCT CACCTGTCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 5 140903779 140903787 CACCTGTCT - DEL DIAPH1 ENST00000253811 human ensembl 69_37n -1 known in_frame_del c.3595_3587 p.ETG1196in_frame_del 1.000:0.994:1.000:1.000:0.164:1.000:1.000:1.000:1.000 smart_Actin-bd_FH2/DRF_autoreg pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg - no_errors DIAPH1 HGNC ENSG00000131504 64 0 0.00 60 18 23.08 - - - FAAH 0 genome.wustl.edu 37 1 46872015 46872015 + Missense_Mutation SNP T T C TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 1 46872015 46872015 T C SNP FAAH ENST00000243167 human ensembl 69_37n +1 known missense c.926 p.V309A 1.000 pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun - no_errors FAAH HGNC ENSG00000117480 36 0 0.00 47 7 12.96 - - - FGF13 0 genome.wustl.edu 37 X 137793117 137793117 + Missense_Mutation SNP G G T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f X 137793117 137793117 G T SNP FGF13 ENST00000315930 human ensembl 69_37n -1 known missense c.49 p.R17S 1.000 NULL pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd - no_errors FGF13 HGNC ENSG00000129682 94 0 0.00 109 60 35.50 - - - GREM1 0 genome.wustl.edu 37 15 33023223 33023223 + Missense_Mutation SNP G G C TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 15 33023223 33023223 G C SNP GREM1 ENST00000300177 human ensembl 69_37n +1 known missense c.332 p.R111P 1.000 pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor - no_errors GREM1 HGNC ENSG00000166923 23 0 0.00 43 11 20.37 - - - MATN2 0 genome.wustl.edu 37 8 98900392 98900392 + Missense_Mutation SNP G G A TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 8 98900392 98900392 G A SNP MATN2 ENST00000254898 human ensembl 69_37n +1 known missense c.64 p.E22K 0.387 NULL pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A - no_errors MATN2 HGNC ENSG00000132561 29 0 0.00 28 12 30.00 - - - MYO18B 0 genome.wustl.edu 37 22 26291174 26291174 + Missense_Mutation SNP T T A TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 22 26291174 26291174 T A SNP MYO18B ENST00000335473 human ensembl 69_37n +1 known missense c.4595 p.L1532H 0.993 NULL pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYO18B HGNC ENSG00000133454 37 0 0.00 30 27 47.37 - - - MYOM3 0 genome.wustl.edu 37 1 24409111 24409111 + Silent SNP G G A TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 1 24409111 24409111 G A SNP MYOM3 ENST00000330966 human ensembl 69_37n -1 known silent c.2067 p.T689 0.020 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors MYOM3 HGNC ENSG00000142661 25 0 0.00 39 13 25.00 - - - NCOR1 0 genome.wustl.edu 37 17 15984026 15984027 + Frame_Shift_Ins INS - - AGGC TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 17 15984026 15984027 - AGGC INS NCOR1 ENST00000268712 human ensembl 69_37n -1 known frame_shift_ins c.3193_3192 p.Y1064fs 0.999:0.529 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR1 HGNC ENSG00000141027 152 0 0.00 68 48 41.38 - - - NKAP 0 genome.wustl.edu 37 X 119077497 119077497 + Silent SNP C C T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f X 119077497 119077497 C T SNP NKAP ENST00000371410 human ensembl 69_37n -1 known silent c.72 p.S24 0.001 NULL pfam_DUF926 - no_errors NKAP HGNC ENSG00000101882 24 0 0.00 23 13 36.11 - - - OR4F6 0 genome.wustl.edu 37 15 102346617 102346617 + Missense_Mutation SNP G G T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 15 102346617 102346617 G T SNP OR4F6 ENST00000328882 human ensembl 69_37n +1 known missense c.695 p.G232V 0.002 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR4F6 HGNC ENSG00000184140 255 0 0.00 181 97 34.89 - - - PIK3CA 0 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 3 178936091 178936091 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1633 p.E545K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 134 0 0.00 87 40 31.25 - - - PPARG 0 genome.wustl.edu 37 3 12447485 12447485 + Missense_Mutation SNP C C G TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 3 12447485 12447485 C G SNP PPARG ENST00000287820 human ensembl 69_37n +1 known missense c.724 p.L242V 1.000 superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt - no_errors PPARG HGNC ENSG00000132170 70 0 0.00 63 28 30.77 - - - TNRC6B 0 genome.wustl.edu 37 22 40661511 40661511 + Missense_Mutation SNP G G T TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 22 40661511 40661511 G T SNP TNRC6B ENST00000454349 human ensembl 69_37n +1 known missense c.1277 p.G426V 1.000 NULL pfam_Argonaute_hook_dom,superfamily_UBA-like - no_errors TNRC6B HGNC ENSG00000100354 77 0 0.00 73 28 27.72 - - - ZNF90 0 genome.wustl.edu 37 19 20228851 20228855 + Frame_Shift_Del DEL ATAAG ATAAG - TCGA-A2-A0YC-01A-11D-A117-09 TCGA-A2-A0YC-10A-01D-A10G-09 ATAAG ATAAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cccf7dc-7c53-409f-a6b1-f86e0f07250b 57b5183f-1ef3-4f14-981e-2ecf416c387f 19 20228851 20228855 ATAAG - DEL ZNF90 ENST00000418063 human ensembl 69_37n +1 known frame_shift_del c.488_492 p.I165fs 0.010:0.012:0.000:0.000:0.002 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF90 HGNC ENSG00000213988 112 0 0.00 91 27 22.69 - - -