Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BRCA2 0 genome.wustl.edu 37 13 32954172 32954172 + Missense_Mutation SNP A A C TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 13 32954172 32954172 A C SNP BRCA2 ENST00000380152 human ensembl 69_37n +1 known missense c.9146 p.Y3049S 0.998 superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2 pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat - no_errors BRCA2 HGNC ENSG00000139618 69 0 0.00 61 19 23.75 - - - CROCCP2 0 genome.wustl.edu 37 1 16950687 16950687 + RNA SNP G G T TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 1 16950687 16950687 G T SNP CROCCP2 ENST00000421700 human ensembl 69_37n -1 known rna NULL NULL 0.003 - - - no_errors CROCCP2 HGNC ENSG00000215908 9 0 0.00 11 4 26.67 - - - KLK5 0 genome.wustl.edu 37 19 51452257 51452257 + Silent SNP G G A TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 19 51452257 51452257 G A SNP KLK5 ENST00000336334 human ensembl 69_37n -1 known silent c.450 p.H150 0.980 pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A - no_errors KLK5 HGNC ENSG00000167754 38 0 0.00 53 6 10.17 - - - KRTAP4-9 0 genome.wustl.edu 37 17 39261693 39261693 + Missense_Mutation SNP A A T TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 17 39261693 39261693 A T SNP KRTAP4-9 ENST00000391415 human ensembl 69_37n +1 known missense c.53 p.D18V 0.587 pfam_Keratin-assoc pfam_Keratin-assoc - no_errors KRTAP4-9 HGNC ENSG00000212722 24 0 0.00 22 7 23.33 - - - PER3 0 genome.wustl.edu 37 1 7890053 7890053 + Missense_Mutation SNP G G A TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 1 7890053 7890053 G A SNP PER3 ENST00000361923 human ensembl 69_37n +1 known missense c.3019 p.A1007T 0.080 pfam_Period_circadian-like_C pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS - no_errors PER3 HGNC ENSG00000049246 16 0 0.00 21 8 26.67 - - - PER3 0 genome.wustl.edu 37 1 7890055 7890055 + Silent SNP T T A TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 1 7890055 7890055 T A SNP PER3 ENST00000361923 human ensembl 69_37n +1 known silent c.3021 p.A1007 0.063 pfam_Period_circadian-like_C pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS - no_errors PER3 HGNC ENSG00000049246 18 0 0.00 25 7 21.88 - - - SDHAP2 0 genome.wustl.edu 37 3 195400728 195400728 + RNA SNP A A G TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 3 195400728 195400728 A G SNP SDHAP2 ENST00000429897 human ensembl 69_37n +1 known rna NULL NULL 0.999 - - - no_errors SDHAP2 HGNC ENSG00000215837 22 0 0.00 21 5 19.23 - - - SHROOM4 0 genome.wustl.edu 37 X 50350782 50350782 + Silent SNP C C T TCGA-A2-A25F-01A-11D-A167-09 TCGA-A2-A25F-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1ed40576-4f1c-4cf6-8eea-e816c5d73d90 26fd695a-be03-4a4c-95c2-937216977eb1 X 50350782 50350782 C T SNP SHROOM4 ENST00000289292 human ensembl 69_37n -1 known silent c.3360 p.Q1120 0.943 NULL pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SHROOM4 HGNC ENSG00000158352 21 0 0.00 18 11 37.93 - - -