Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AP1G2 0 genome.wustl.edu 37 14 24032653 24032654 + Frame_Shift_Ins INS - - C TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 14 24032653 24032654 - C INS AP1G2 ENST00000308724 human ensembl 69_37n -1 known frame_shift_ins c.1346_1345 p.A449fs 1.000:0.996 pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app - no_errors AP1G2 HGNC ENSG00000213983 44 0 0.00 53 6 10.17 - - - COX6C 0 genome.wustl.edu 37 8 100899792 100899792 + Missense_Mutation SNP C C A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 8 100899792 100899792 C A SNP COX6C ENST00000297564 human ensembl 69_37n -1 known missense c.169 p.D57Y 1.000 pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c - no_errors COX6C HGNC ENSG00000164919 95 0 0.00 168 19 10.16 - - - DLC1 0 genome.wustl.edu 37 8 12957977 12957977 + Silent SNP G G A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 8 12957977 12957977 G A SNP DLC1 ENST00000276297 human ensembl 69_37n -1 known silent c.1869 p.S623 0.998 NULL pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom - no_errors DLC1 HGNC ENSG00000164741 69 0 0.00 47 11 18.97 - - - FCRL1 0 genome.wustl.edu 37 1 157773658 157773658 + Missense_Mutation SNP C C T TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 1 157773658 157773658 C T SNP FCRL1 ENST00000368176 human ensembl 69_37n -1 known missense c.296 p.R99K 0.000 smart_Ig_sub,pfscan_Ig-like pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors FCRL1 HGNC ENSG00000163534 168 0 0.00 166 63 27.51 - - - FNDC3A 0 genome.wustl.edu 37 13 49712942 49712945 + Splice_Site DEL GTAA GTAA - TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 GTAA GTAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 13 49712942 49712945 GTAA - DEL FNDC3A ENST00000492622 human ensembl 69_37n +1 known splice_site_del c.819+1_819+1 e6+1 1.000:1.000:1.000:1.000 - - - no_errors FNDC3A HGNC ENSG00000102531 97 0 0.00 48 9 15.79 - - - IL12RB1 0 genome.wustl.edu 37 19 18186597 18186597 + Missense_Mutation SNP G G A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 19 18186597 18186597 G A SNP IL12RB1 ENST00000430026 human ensembl 69_37n -1 known missense c.662 p.S221F 0.627 superfamily_Fibronectin_type3 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 - no_errors IL12RB1 HGNC ENSG00000096996 33 0 0.00 28 11 28.21 - - - MAN2A1 0 genome.wustl.edu 37 5 109091135 109091135 + Silent SNP T T C TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 5 109091135 109091135 T C SNP MAN2A1 ENST00000261483 human ensembl 69_37n +1 known silent c.813 p.H271 1.000 pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom - no_errors MAN2A1 HGNC ENSG00000112893 275 0 0.00 125 35 21.88 - - - PDS5B 0 genome.wustl.edu 37 13 33233398 33233398 + Missense_Mutation SNP A A T TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 13 33233398 33233398 A T SNP PDS5B ENST00000315596 human ensembl 69_37n +1 known missense c.605 p.N202I 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors PDS5B HGNC ENSG00000083642 222 0 0.00 164 53 24.42 - - - PLEKHS1 0 genome.wustl.edu 37 10 115540376 115540376 + Missense_Mutation SNP A A G TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 10 115540376 115540376 A G SNP PLEKHS1 ENST00000369312 human ensembl 69_37n +1 known missense c.937 p.I313V 0.994 NULL NULL - no_errors PLEKHS1 HGNC ENSG00000148735 133 0 0.00 140 24 14.63 - - - PLXNA3 0 genome.wustl.edu 37 X 153688564 153688565 + Frame_Shift_Ins INS - - G TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e X 153688564 153688565 - G INS PLXNA3 ENST00000369682 human ensembl 69_37n +1 known frame_shift_ins c.41_42 p.A17fs 0.001:0.006 pfscan_Semaphorin/CD100_Ag pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag - no_errors PLXNA3 HGNC ENSG00000130827 16 0 0.00 6 3 33.33 - - - POLE2 0 genome.wustl.edu 37 14 50122403 50122403 + Missense_Mutation SNP C C T TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 14 50122403 50122403 C T SNP POLE2 ENST00000216367 human ensembl 69_37n -1 known missense c.914 p.R305H 0.996 pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu - no_errors POLE2 HGNC ENSG00000100479 455 0 0.00 281 49 14.85 - - - SERPINE1 0 genome.wustl.edu 37 7 100776989 100776989 + Silent SNP G G A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 7 100776989 100776989 G A SNP SERPINE1 ENST00000223095 human ensembl 69_37n +1 known silent c.714 p.T238 0.706 pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPINE1 HGNC ENSG00000106366 143 0 0.00 232 28 10.77 - - - STAP1 0 genome.wustl.edu 37 4 68449419 68449419 + Missense_Mutation SNP G G C TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 4 68449419 68449419 G C SNP STAP1 ENST00000265404 human ensembl 69_37n +1 known missense c.658 p.D220H 1.000 pfam_SH2,smart_SH2,pfscan_SH2 pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2 - no_errors STAP1 HGNC ENSG00000035720 59 0 0.00 20 8 28.57 - - - SVIL 0 genome.wustl.edu 37 10 29813441 29813441 + Missense_Mutation SNP C C T TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 10 29813441 29813441 C T SNP SVIL ENST00000355867 human ensembl 69_37n -1 known missense c.2546 p.R849H 1.000 NULL pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin - no_errors SVIL HGNC ENSG00000197321 147 0 0.00 166 41 19.81 - - - TET3 0 genome.wustl.edu 37 2 74275539 74275539 + Splice_Site SNP G G A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 2 74275539 74275539 G A SNP TET3 ENST00000409262 human ensembl 69_37n +1 known splice_site c.2089+1 e1+1 1.000 - - - no_errors TET3 HGNC ENSG00000187605 39 0 0.00 40 6 13.04 - - - TEX13B 0 genome.wustl.edu 37 X 107224730 107224730 + Silent SNP G G A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e X 107224730 107224730 G A SNP TEX13B ENST00000302917 human ensembl 69_37n -1 known silent c.519 p.A173 0.000 NULL NULL - no_errors TEX13B HGNC ENSG00000170925 128 0 0.00 125 28 18.18 - - - TP53 0 genome.wustl.edu 37 17 7578403 7578403 + Missense_Mutation SNP C C A TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 17 7578403 7578403 C A SNP TP53 ENST00000269305 human ensembl 69_37n -1 known missense c.527 p.C176F 1.000 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 82 0 0.00 72 36 33.33 - - - VRTN 0 genome.wustl.edu 37 14 74824804 74824804 + Missense_Mutation SNP C C T TCGA-A8-A08X-01A-21W-A019-09 TCGA-A8-A08X-10A-01W-A021-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 263fb74b-c2f8-4ad7-8b3e-0e02749d167e 14 74824804 74824804 C T SNP VRTN ENST00000256362 human ensembl 69_37n +1 known missense c.1318 p.R440W 1.000 NULL pfam_Transposase_8 - no_errors VRTN HGNC ENSG00000133980 62 0 0.00 42 16 27.59 - - -