Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All A2MP1 0 genome.wustl.edu 37 12 9413853 9413853 + RNA SNP T T C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 12 9413853 9413853 T C SNP A2MP1 ENST00000544183 human ensembl 69_37n -1 known rna NULL NULL 0.001 - - - no_errors A2MP1 HGNC ENSG00000256069 24 0 0.00 30 5 14.29 - - - AKR1CL1 0 genome.wustl.edu 37 10 5199934 5199934 + Missense_Mutation SNP G G C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 10 5199934 5199934 G C SNP AKR1CL1 ENST00000473890 human ensembl 69_37n -1 novel missense c.232 p.R78G 0.000 pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr - no_errors AKR1CL1 HGNC ENSG00000196326 28 0 0.00 60 9 13.04 - - - ANP32AP1 0 genome.wustl.edu 37 15 35529406 35529406 + RNA SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 15 35529406 35529406 C T SNP ANP32AP1 ENST00000560832 human ensembl 69_37n +1 known rna NULL NULL 0.008 - - - no_errors ANP32AP1 HGNC ENSG00000259516 9 0 0.00 43 8 15.69 - - - ASTN2 0 genome.wustl.edu 37 9 119770383 119770383 + Missense_Mutation SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 9 119770383 119770383 C T SNP ASTN2 ENST00000313400 human ensembl 69_37n -1 known missense c.1579 p.D527N 1.000 NULL pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF - no_errors ASTN2 HGNC ENSG00000148219 22 0 0.00 50 13 20.63 - - - CEP152 0 genome.wustl.edu 37 15 49085545 49085545 + Silent SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 15 49085545 49085545 G A SNP CEP152 ENST00000380950 human ensembl 69_37n -1 known silent c.805 p.L269 1.000 NULL NULL - no_errors CEP152 HGNC ENSG00000103995 16 0 0.00 56 16 22.22 - - - DCUN1D4 0 genome.wustl.edu 37 4 52780048 52780048 + RNA SNP G G C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 4 52780048 52780048 G C SNP DCUN1D4 ENST00000508257 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors DCUN1D4 HGNC ENSG00000109184 24 0 0.00 38 6 13.33 - - - DENND2D 0 genome.wustl.edu 37 1 111730159 111730159 + RNA SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 111730159 111730159 G A SNP DENND2D ENST00000468692 human ensembl 69_37n -1 known rna NULL NULL 0.001 - - - no_errors DENND2D HGNC ENSG00000162777 35 0 0.00 100 15 13.04 - - - DENND2D 0 genome.wustl.edu 37 1 111730160 111730160 + RNA SNP C C A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 111730160 111730160 C A SNP DENND2D ENST00000468692 human ensembl 69_37n -1 known rna NULL NULL 0.016 - - - no_errors DENND2D HGNC ENSG00000162777 35 0 0.00 100 14 12.28 - - - EGFLAM 0 genome.wustl.edu 37 5 38370546 38370546 + Missense_Mutation SNP G G T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 5 38370546 38370546 G T SNP EGFLAM ENST00000354891 human ensembl 69_37n +1 known missense c.694 p.D232Y 0.003 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G - no_errors EGFLAM HGNC ENSG00000164318 18 0 0.00 35 10 22.22 - - - FAM89A 0 genome.wustl.edu 37 1 231161773 231161773 + RNA SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 231161773 231161773 C T SNP FAM89A ENST00000494111 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors FAM89A HGNC ENSG00000182118 9 0 0.00 18 18 50.00 - - - FLG 0 genome.wustl.edu 37 1 152280782 152280782 + Missense_Mutation SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 152280782 152280782 A G SNP FLG ENST00000368799 human ensembl 69_37n -1 known missense c.6580 p.Y2194H 0.000 NULL pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin - no_errors FLG HGNC ENSG00000143631 83 0 0.00 156 24 13.26 - - - GPC2 0 genome.wustl.edu 37 7 99767587 99767587 + RNA SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 7 99767587 99767587 A G SNP GPC2 ENST00000471050 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors GPC2 HGNC ENSG00000213420 16 0 0.00 27 11 28.95 - - - HERC2P4 0 genome.wustl.edu 37 16 32192670 32192670 + RNA SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 16 32192670 32192670 C T SNP HERC2P4 ENST00000568097 human ensembl 69_37n -1 known rna NULL NULL 0.939 - - - no_errors HERC2P4 HGNC ENSG00000230267 46 0 0.00 91 17 15.74 - - - HOXA5 0 genome.wustl.edu 37 7 27181431 27181431 + RNA SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 7 27181431 27181431 C T SNP HOXA5 ENST00000520854 human ensembl 69_37n -1 putative rna NULL NULL 1.000 - - - no_errors HOXA5 HGNC ENSG00000106004 19 0 0.00 28 12 30.00 - - - LHX9 0 genome.wustl.edu 37 1 197898292 197898292 + Missense_Mutation SNP C C G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 197898292 197898292 C G SNP LHX9 ENST00000367387 human ensembl 69_37n +1 known missense c.1097 p.T366S 1.000 NULL pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain - no_errors LHX9 HGNC ENSG00000143355 17 0 0.00 32 10 23.81 - - - LRRC63 0 genome.wustl.edu 37 13 46801970 46801970 + Missense_Mutation SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 13 46801970 46801970 A G SNP LRRC63 ENST00000446175 human ensembl 69_37n +1 known missense c.409 p.M137V 0.000 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC63 HGNC ENSG00000173988 13 0 0.00 25 5 16.67 - - - MAP3K1 0 genome.wustl.edu 37 5 56161269 56161271 + In_Frame_Del DEL TTA TTA - TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 TTA TTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 5 56161269 56161271 TTA - DEL MAP3K1 ENST00000399503 human ensembl 69_37n +1 novel in_frame_del c.1138_1140 p.L380in_frame_del 0.988:0.999:0.997 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom - no_errors MAP3K1 HGNC ENSG00000095015 23 0 0.00 51 10 16.13 - - - MGC34034 0 genome.wustl.edu 37 6 134142606 134142606 + RNA SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 6 134142606 134142606 A G SNP MGC34034 ENST00000456347 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors RP4-662A9.2 Clone_based_vega_gene ENSG00000223586 18 0 0.00 22 5 18.52 - - - MTRNR2L3 0 genome.wustl.edu 37 20 55934083 55934083 + Missense_Mutation SNP T T C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 20 55934083 55934083 T C SNP MTRNR2L3 ENST00000543500 human ensembl 69_37n -1 known missense c.13 p.R5G 1.000 NULL NULL - no_errors MTRNR2L3 HGNC ENSG00000256222 22 0 0.00 30 5 14.29 - - - MUC4 0 genome.wustl.edu 37 3 195511390 195511390 + Missense_Mutation SNP T T G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 3 195511390 195511390 T G SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.7061 p.H2354P 0.001 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 48 0 0.00 76 11 12.64 - - - MUC4 0 genome.wustl.edu 37 3 195513779 195513779 + Missense_Mutation SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 3 195513779 195513779 C T SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.4672 p.A1558T 0.004 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 48 0 0.00 47 6 11.11 - - - NPAS2 0 genome.wustl.edu 37 2 101437561 101437561 + Missense_Mutation SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 2 101437561 101437561 G A SNP NPAS2 ENST00000542504 human ensembl 69_37n +1 known missense c.73 p.E25K 0.000 NULL pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS - no_errors NPAS2 HGNC ENSG00000170485 31 0 0.00 54 7 11.29 - - - NTN3 0 genome.wustl.edu 37 16 2522060 2522060 + Missense_Mutation SNP G G C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 16 2522060 2522060 G C SNP NTN3 ENST00000293973 human ensembl 69_37n +1 known missense c.358 p.V120L 1.000 pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N pfam_EGF_laminin,pfam_Laminin_N,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain - no_errors NTN3 HGNC ENSG00000162068 24 0 0.00 40 7 14.58 - - - NUP155 0 genome.wustl.edu 37 5 37350364 37350364 + Missense_Mutation SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 5 37350364 37350364 C T SNP NUP155 ENST00000231498 human ensembl 69_37n -1 known missense c.727 p.E243K 1.000 pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom - no_errors NUP155 HGNC ENSG00000113569 16 0 0.00 87 39 30.71 - - - ODZ4 0 genome.wustl.edu 37 11 78381280 78381280 + Missense_Mutation SNP G G T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 11 78381280 78381280 G T SNP ODZ4 ENST00000278550 human ensembl 69_37n -1 known missense c.6110 p.T2037K 0.976 NULL pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core - no_errors ODZ4 HGNC ENSG00000149256 28 0 0.00 47 11 18.97 - - - PLA2G6 0 genome.wustl.edu 37 22 38543453 38543453 + RNA SNP T T C TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 22 38543453 38543453 T C SNP PLA2G6 ENST00000420435 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors PLA2G6 HGNC ENSG00000184381 28 0 0.00 63 9 12.50 - - - RAET1K 0 genome.wustl.edu 37 6 150326267 150326267 + RNA SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 6 150326267 150326267 A G SNP RAET1K ENST00000533735 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors RAET1K HGNC ENSG00000218358 38 0 0.00 36 4 10.00 - - - RBMXL3 0 genome.wustl.edu 37 X 114427149 114427149 + Missense_Mutation SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 X 114427149 114427149 A G SNP RBMXL3 ENST00000424776 human ensembl 69_37n +1 known missense c.3145 p.R1049G 0.987 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBMXL3 HGNC ENSG00000175718 16 0 0.00 9 11 55.00 - - - RRP12 0 genome.wustl.edu 37 10 99118293 99118293 + Splice_Site SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 10 99118293 99118293 C T SNP RRP12 ENST00000370992 human ensembl 69_37n -1 known splice_site c.3791+1 e33+1 1.000 - - - no_errors RRP12 HGNC ENSG00000052749 11 0 0.00 19 5 20.83 - - - SLC43A3 0 genome.wustl.edu 37 11 57177569 57177569 + Silent SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 11 57177569 57177569 G A SNP SLC43A3 ENST00000352187 human ensembl 69_37n -1 known silent c.1086 p.L362 0.953 pfam_MFS,superfamily_MFS_dom_general_subst_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt - no_errors SLC43A3 HGNC ENSG00000134802 13 0 0.00 14 6 30.00 - - - SOCS2 0 genome.wustl.edu 37 12 93968720 93968720 + Missense_Mutation SNP G G T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 12 93968720 93968720 G T SNP SOCS2 ENST00000340600 human ensembl 69_37n +1 known missense c.362 p.S121I 1.000 pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2 pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,prints_SH2,pfscan_SOCS_C,pfscan_SH2 - no_errors SOCS2 HGNC ENSG00000120833 9 0 0.00 21 5 19.23 - - - SPIN2A 0 genome.wustl.edu 37 X 57162385 57162385 + Missense_Mutation SNP A A G TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 X 57162385 57162385 A G SNP SPIN2A ENST00000374906 human ensembl 69_37n -1 known missense c.646 p.Y216H 1.000 pfam_Spin_Ssty pfam_Spin_Ssty - no_errors SPIN2A HGNC ENSG00000147059 30 0 0.00 51 11 17.74 - - - TNS3 0 genome.wustl.edu 37 7 47481602 47481602 + Missense_Mutation SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 7 47481602 47481602 G A SNP TNS3 ENST00000457718 human ensembl 69_37n -1 putative missense c.286 p.R96W 0.001 NULL pfam_Tensin_phosphatase_C2-dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Tyr_Pase_cat,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_stop_codon:bad_bp_length_for_coding_region TNS3 HGNC ENSG00000136205 8 0 0.00 16 15 48.39 - - - TPTE2P1 0 genome.wustl.edu 37 13 25541467 25541467 + RNA SNP C C T TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 13 25541467 25541467 C T SNP TPTE2P1 ENST00000381871 human ensembl 69_37n -1 known rna NULL NULL 0.009 - - - no_errors TPTE2P1 HGNC ENSG00000253771 19 0 0.00 43 8 15.69 - - - TRIM62 0 genome.wustl.edu 37 1 33623922 33623922 + Frame_Shift_Del DEL G G - TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 1 33623922 33623922 G - DEL TRIM62 ENST00000291416 human ensembl 69_37n -1 known frame_shift_del c.809 p.P270fs 0.999 NULL pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM62 HGNC ENSG00000116525 44 0 0.00 50 8 13.79 - - - ZNF710 0 genome.wustl.edu 37 15 90611206 90611206 + Silent SNP G G A TCGA-AC-A2FE-01A-11D-A19Y-09 TCGA-AC-A2FE-11B-22D-A19Y-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f97dcfdf-eed2-4844-8547-162917143704 a2826b46-da0f-4e0d-9f06-bfae025386a6 15 90611206 90611206 G A SNP ZNF710 ENST00000268154 human ensembl 69_37n +1 known silent c.837 p.Q279 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF710 HGNC ENSG00000140548 20 0 0.00 34 8 19.05 - - -