Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AFF1 0 genome.wustl.edu 37 4 88029432 88029432 + Missense_Mutation SNP G G A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 4 88029432 88029432 G A SNP AFF1 ENST00000395146 human ensembl 69_37n +1 known missense c.1498 p.E500K 1.000 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF1 HGNC ENSG00000172493 23 0 0.00 24 4 14.29 - - - AGAP4 0 genome.wustl.edu 37 10 46342649 46342649 + Silent SNP T T C TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 10 46342649 46342649 T C SNP AGAP4 ENST00000448048 human ensembl 69_37n -1 known silent c.147 p.V49 0.177 NULL pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP - no_errors AGAP4 HGNC ENSG00000188234 12 0 0.00 10 9 47.37 - - - C1QTNF5 0 genome.wustl.edu 37 11 119210295 119210295 + Missense_Mutation SNP A A G TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 11 119210295 119210295 A G SNP C1QTNF5 ENST00000445041 human ensembl 69_37n -1 known missense c.478 p.Y160H 1.000 pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q - no_errors C1QTNF5 HGNC ENSG00000223953 114 0 0.00 111 22 16.54 - - - CDH1 0 genome.wustl.edu 37 16 68862200 68862201 + Frame_Shift_Ins INS - - G TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 16 68862200 68862201 - G INS CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_ins c.2288_2289 p.D764fs 1.000:0.883 pfam_Cadherin_cytoplasmic-dom pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 76 0 0.00 88 14 13.73 - - - EP400 0 genome.wustl.edu 37 12 132547141 132547141 + Silent SNP G G A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 12 132547141 132547141 G A SNP EP400 ENST00000333577 human ensembl 69_37n +1 known silent c.8337 p.Q2779 0.737 NULL pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors EP400 HGNC ENSG00000183495 42 0 0.00 38 5 11.63 - - - ERBB2 0 genome.wustl.edu 37 17 37880220 37880220 + Missense_Mutation SNP T T C TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 17 37880220 37880220 T C SNP ERBB2 ENST00000269571 human ensembl 69_37n +1 known missense c.2264 p.L755S 1.000 pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors ERBB2 HGNC ENSG00000141736 26 0 0.00 42 7 14.29 - - - EVPLL 0 genome.wustl.edu 37 17 18292454 18292454 + RNA SNP C C G TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 17 18292454 18292454 C G SNP EVPLL ENST00000583003 human ensembl 69_37n +1 putative rna NULL NULL 0.006 - - - no_errors EVPLL HGNC ENSG00000214860 9 0 0.00 6 4 40.00 - - - EXOC4 0 genome.wustl.edu 37 7 132937919 132937919 + Missense_Mutation SNP C C T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 7 132937919 132937919 C T SNP EXOC4 ENST00000253861 human ensembl 69_37n +1 known missense c.62 p.S21L 1.000 NULL pfam_Sec8_exocyst - no_errors EXOC4 HGNC ENSG00000131558 24 0 0.00 25 6 19.35 - - - IL32 0 genome.wustl.edu 37 16 3131810 3131810 + Silent SNP T T C TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 16 3131810 3131810 T C SNP IL32 ENST00000525377 human ensembl 69_37n +1 putative silent c.516 p.V172 0.000 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region IL32 HGNC ENSG00000008517 25 0 0.00 22 7 24.14 - - - LARP1B 0 genome.wustl.edu 37 4 129143606 129143606 + RNA SNP C C T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 4 129143606 129143606 C T SNP LARP1B ENST00000503725 human ensembl 69_37n +1 known rna NULL NULL 0.003 - - - no_errors LARP1B HGNC ENSG00000138709 50 0 0.00 70 10 12.50 - - - LILRB5 0 genome.wustl.edu 37 19 54759985 54759985 + Missense_Mutation SNP C C A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 19 54759985 54759985 C A SNP LILRB5 ENST00000450632 human ensembl 69_37n -1 known missense c.549 p.R183S 0.001 smart_Ig_sub smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors LILRB5 HGNC ENSG00000105609 58 0 0.00 63 7 10.00 - - - MUC16 0 genome.wustl.edu 37 19 9058918 9058918 + Missense_Mutation SNP C C T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 19 9058918 9058918 C T SNP MUC16 ENST00000397910 human ensembl 69_37n -1 known missense c.28528 p.E9510K 0.000 NULL pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC16 HGNC ENSG00000181143 25 0 0.00 47 9 16.07 - - - NAP1L4 0 genome.wustl.edu 37 11 2970465 2970465 + RNA SNP G G T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 11 2970465 2970465 G T SNP NAP1L4 ENST00000469089 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors NAP1L4 HGNC ENSG00000205531 35 0 0.00 35 4 10.26 - - - OGFR 0 genome.wustl.edu 37 20 61444600 61444600 + Missense_Mutation SNP C C A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 20 61444600 61444600 C A SNP OGFR ENST00000290291 human ensembl 69_37n +1 known missense c.1633 p.R545S 0.000 pfam_OGF_rcpt_rpt pfam_OGF_rcpt,pfam_OGF_rcpt_rpt - no_errors OGFR HGNC ENSG00000060491 28 0 0.00 26 5 16.13 - - - PLEKHH2 0 genome.wustl.edu 37 2 43927380 43927380 + Missense_Mutation SNP C C A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 2 43927380 43927380 C A SNP PLEKHH2 ENST00000282406 human ensembl 69_37n +1 known missense c.1283 p.T428K 0.003 NULL pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology - no_errors PLEKHH2 HGNC ENSG00000152527 44 0 0.00 44 6 12.00 - - - RGS22 0 genome.wustl.edu 37 8 101117734 101117734 + RNA SNP A A G TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 8 101117734 101117734 A G SNP RGS22 ENST00000522064 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors RGS22 HGNC ENSG00000132554 28 0 0.00 34 4 10.53 - - - RPP30 0 genome.wustl.edu 37 10 92655664 92655664 + Missense_Mutation SNP G G T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 10 92655664 92655664 G T SNP RPP30 ENST00000413330 human ensembl 69_37n +1 known missense c.607 p.V203L 0.959 pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like - no_errors RPP30 HGNC ENSG00000148688 45 0 0.00 57 7 10.94 - - - UBA6 0 genome.wustl.edu 37 4 68500227 68500227 + Missense_Mutation SNP G G T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 4 68500227 68500227 G T SNP UBA6 ENST00000322244 human ensembl 69_37n -1 known missense c.1852 p.P618T 1.000 pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1 pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1 - no_errors UBA6 HGNC ENSG00000033178 41 0 0.00 35 4 10.26 - - - XKR5 0 genome.wustl.edu 37 8 6686791 6686791 + RNA SNP C C T TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 8 6686791 6686791 C T SNP XKR5 ENST00000405979 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors XKR5 HGNC ENSG00000186530 38 0 0.00 33 4 10.81 - - - ZNF652 0 genome.wustl.edu 37 17 47375975 47375975 + Missense_Mutation SNP G G A TCGA-AC-A3YI-01A-21D-A23C-09 TCGA-AC-A3YI-10A-01D-A23C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52e2b434-5394-4a59-a62f-0e6de07c0539 dd822976-3f35-4194-8c2a-ddaf2408f4a3 17 47375975 47375975 G A SNP ZNF652 ENST00000362063 human ensembl 69_37n -1 known missense c.1621 p.R541W 0.915 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF652 HGNC ENSG00000198740 22 0 0.00 13 4 23.53 - - -