Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANKRD16 0 genome.wustl.edu 37 10 5930026 5930026 + Missense_Mutation SNP G G A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 10 5930026 5930026 G A SNP ANKRD16 ENST00000380092 human ensembl 69_37n -1 known missense c.319 p.P107S 1.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD16 HGNC ENSG00000134461 33 0 0.00 24 14 36.84 - - - BARX2 0 genome.wustl.edu 37 11 129306679 129306679 + Missense_Mutation SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 11 129306679 129306679 C T SNP BARX2 ENST00000281437 human ensembl 69_37n +1 known missense c.221 p.S74L 1.000 NULL pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa - no_errors BARX2 HGNC ENSG00000043039 14 0 0.00 9 6 40.00 - - - CEP120 0 genome.wustl.edu 37 5 122685675 122685675 + Nonsense_Mutation SNP G G A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 5 122685675 122685675 G A SNP CEP120 ENST00000306467 human ensembl 69_37n -1 known nonsense c.2689 p.R897* 0.990 NULL pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB - no_errors CEP120 HGNC ENSG00000168944 251 0 0.00 194 76 28.15 - - - CYP26B1 0 genome.wustl.edu 37 2 72361955 72361955 + Missense_Mutation SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 2 72361955 72361955 C T SNP CYP26B1 ENST00000001146 human ensembl 69_37n -1 known missense c.796 p.A266T 1.000 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450 - no_errors CYP26B1 HGNC ENSG00000003137 37 0 0.00 29 14 32.56 - - - DHX15 0 genome.wustl.edu 37 4 24542562 24542562 + Missense_Mutation SNP A A T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 4 24542562 24542562 A T SNP DHX15 ENST00000336812 human ensembl 69_37n -1 known missense c.1495 p.Y499N 1.000 pfscan_Helicase_C pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors DHX15 HGNC ENSG00000109606 147 0 0.00 133 16 10.74 - - - FASTKD3 0 genome.wustl.edu 37 5 7867647 7867647 + Missense_Mutation SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 5 7867647 7867647 C T SNP FASTKD3 ENST00000264669 human ensembl 69_37n -1 known missense c.550 p.A184T 0.993 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors FASTKD3 HGNC ENSG00000124279 66 0 0.00 46 8 14.81 - - - FASTKD5 0 genome.wustl.edu 37 20 3127664 3127664 + Missense_Mutation SNP A A C TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 20 3127664 3127664 A C SNP FASTKD5 ENST00000380266 human ensembl 69_37n -1 known missense c.2053 p.C685G 0.000 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP - no_errors FASTKD5 HGNC ENSG00000215251 44 0 0.00 20 17 45.95 - - - FGD5 0 genome.wustl.edu 37 3 14861440 14861440 + Missense_Mutation SNP G G A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 3 14861440 14861440 G A SNP FGD5 ENST00000285046 human ensembl 69_37n +1 known missense c.862 p.G288R 0.027 NULL pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain - no_errors FGD5 HGNC ENSG00000154783 23 0 0.00 13 7 35.00 - - - GMDS 0 genome.wustl.edu 37 6 2124961 2124961 + Missense_Mutation SNP C C G TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 6 2124961 2124961 C G SNP GMDS ENST00000380815 human ensembl 69_37n -1 known missense c.107 p.G36A 1.000 pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase - no_errors GMDS HGNC ENSG00000112699 67 0 0.00 55 20 26.67 - - - HACE1 0 genome.wustl.edu 37 6 105219210 105219210 + Missense_Mutation SNP T T A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 6 105219210 105219210 T A SNP HACE1 ENST00000262903 human ensembl 69_37n -1 known missense c.2069 p.N690I 1.000 pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt - no_errors HACE1 HGNC ENSG00000085382 169 0 0.00 110 35 24.14 - - - HEATR7B2 0 genome.wustl.edu 37 5 41052602 41052602 + Missense_Mutation SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 5 41052602 41052602 C T SNP HEATR7B2 ENST00000399564 human ensembl 69_37n -1 known missense c.1195 p.V399I 0.928 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors HEATR7B2 HGNC ENSG00000171495 106 0 0.00 78 32 29.09 - - - IL17RD 0 genome.wustl.edu 37 3 57139978 57139978 + Silent SNP G G A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 3 57139978 57139978 G A SNP IL17RD ENST00000296318 human ensembl 69_37n -1 known silent c.654 p.F218 0.941 NULL pfam_SEFIR,superfamily_TIR_dom - no_errors IL17RD HGNC ENSG00000144730 79 0 0.00 50 18 26.47 - - - INADL 0 genome.wustl.edu 37 1 62274159 62274160 + Frame_Shift_Del DEL AC AC - TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 AC AC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 1 62274159 62274160 AC - DEL INADL ENST00000371158 human ensembl 69_37n +1 known frame_shift_del c.1640_1641 p.Q549fs 0.996:0.507 superfamily_PDZ pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ - no_errors INADL HGNC ENSG00000132849 358 0 0.00 280 108 27.20 - - - ITFG1 0 genome.wustl.edu 37 16 47252799 47252799 + Missense_Mutation SNP C C A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 16 47252799 47252799 C A SNP ITFG1 ENST00000320640 human ensembl 69_37n -1 known missense c.1433 p.G478V 0.998 NULL NULL - no_errors ITFG1 HGNC ENSG00000129636 316 0 0.00 185 90 32.61 - - - LARP1B 0 genome.wustl.edu 37 4 129043387 129043387 + Missense_Mutation SNP G G C TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 4 129043387 129043387 G C SNP LARP1B ENST00000507377 human ensembl 69_37n +1 known missense c.1473 p.L491F 0.001 NULL pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region LARP1B HGNC ENSG00000138709 65 0 0.00 46 13 22.03 - - - MLEC 0 genome.wustl.edu 37 12 121132627 121132627 + Missense_Mutation SNP G G T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 12 121132627 121132627 G T SNP MLEC ENST00000228506 human ensembl 69_37n +1 known missense c.415 p.V139L 1.000 pfam_Malectin pfam_Malectin - no_errors MLEC HGNC ENSG00000110917 175 1 0.57 99 44 30.77 - - - MLL3 0 genome.wustl.edu 37 7 151945474 151945474 + Nonsense_Mutation SNP G G C TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 7 151945474 151945474 G C SNP MLL3 ENST00000355193 human ensembl 69_37n -1 known nonsense c.2045 p.S682* 0.000 NULL pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING - no_errors MLL3 HGNC ENSG00000055609 171 0 0.00 113 51 31.10 - - - NCAM2 0 genome.wustl.edu 37 21 22782691 22782691 + Frame_Shift_Del DEL A A - TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 21 22782691 22782691 A - DEL NCAM2 ENST00000400546 human ensembl 69_37n +1 known frame_shift_del c.1293 p.I432fs 0.938 pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like,prints_Neural_cell_adh - no_errors NCAM2 HGNC ENSG00000154654 133 0 0.00 119 36 22.93 - - - NEK5 0 genome.wustl.edu 37 13 52661583 52661583 + Missense_Mutation SNP C C A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 13 52661583 52661583 C A SNP NEK5 ENST00000355568 human ensembl 69_37n -1 known missense c.1283 p.R428L 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors NEK5 HGNC ENSG00000197168 220 0 0.00 58 53 47.75 - - - NFE2L3 0 genome.wustl.edu 37 7 26224284 26224284 + Silent SNP T T C TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 7 26224284 26224284 T C SNP NFE2L3 ENST00000056233 human ensembl 69_37n +1 known silent c.966 p.C322 0.004 NULL pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP - no_errors NFE2L3 HGNC ENSG00000050344 113 0 0.00 58 10 14.49 - - - ODZ2 0 genome.wustl.edu 37 5 167545418 167545418 + Silent SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 5 167545418 167545418 C T SNP ODZ2 ENST00000518659 human ensembl 69_37n +1 known silent c.1935 p.C645 1.000 pfam_EGF_extracell,smart_EGF-like,pfscan_EG-like_dom pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core - no_errors ODZ2 HGNC ENSG00000145934 16 0 0.00 15 4 21.05 - - - OPRM1 0 genome.wustl.edu 37 6 154412132 154412132 + Missense_Mutation SNP G G T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 6 154412132 154412132 G T SNP OPRM1 ENST00000434900 human ensembl 69_37n +1 known missense c.968 p.W323L 1.000 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt - no_errors OPRM1 HGNC ENSG00000112038 224 0 0.00 141 61 30.20 - - - OR2B3 0 genome.wustl.edu 37 6 29055016 29055016 + Nonsense_Mutation SNP C C A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 6 29055016 29055016 C A SNP OR2B3 ENST00000377173 human ensembl 69_37n -1 known nonsense c.10 p.E4* 0.329 NULL pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR2B3 HGNC ENSG00000204703 86 0 0.00 62 22 26.19 - - - PCDHGA11 0 genome.wustl.edu 37 5 140801090 140801090 + Missense_Mutation SNP C C T TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 5 140801090 140801090 C T SNP PCDHGA11 ENST00000398587 human ensembl 69_37n +1 known missense c.296 p.T99M 0.000 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHGA11 HGNC ENSG00000253873 11 0 0.00 10 4 28.57 - - - PSMD1 0 genome.wustl.edu 37 2 231927025 231927025 + Frame_Shift_Del DEL G G - TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 2 231927025 231927025 G - DEL PSMD1 ENST00000308696 human ensembl 69_37n +1 known frame_shift_del c.124 p.V42fs 1.000 superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2 pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2 - no_errors PSMD1 HGNC ENSG00000173692 202 0 0.00 148 20 11.76 - - - RAB3GAP2 0 genome.wustl.edu 37 1 220340879 220340879 + Missense_Mutation SNP A A G TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 1 220340879 220340879 A G SNP RAB3GAP2 ENST00000358951 human ensembl 69_37n -1 known missense c.2945 p.V982A 0.019 NULL superfamily_WD40_repeat_dom - no_errors RAB3GAP2 HGNC ENSG00000118873 246 0 0.00 167 73 30.42 - - - RAD54L 0 genome.wustl.edu 37 1 46743834 46743834 + Missense_Mutation SNP C C A TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 1 46743834 46743834 C A SNP RAD54L ENST00000371975 human ensembl 69_37n +1 known missense c.2124 p.H708Q 0.996 NULL pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors RAD54L HGNC ENSG00000085999 15 0 0.00 16 13 44.83 - - - SLC5A7 0 genome.wustl.edu 37 2 108604635 108604635 + Silent SNP G G C TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 2 108604635 108604635 G C SNP SLC5A7 ENST00000264047 human ensembl 69_37n +1 known silent c.24 p.L8 1.000 pfscan_Na/solute_symporter pfam_Na/solute_symporter,pfscan_Na/solute_symporter - no_errors SLC5A7 HGNC ENSG00000115665 103 0 0.00 87 28 23.93 - - - UHRF1 0 genome.wustl.edu 37 19 4956762 4956762 + RNA SNP A A G TCGA-AN-A0XV-01A-11D-A10G-09 TCGA-AN-A0XV-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e ad602351-e61a-4469-97b0-fedfa3320fdf 19 4956762 4956762 A G SNP UHRF1 ENST00000262952 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors UHRF1 HGNC ENSG00000034063 46 0 0.00 46 21 31.34 - - -