Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All APC 0 genome.wustl.edu 37 5 112177283 112177283 + Missense_Mutation SNP G G A TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 5 112177283 112177283 G A SNP APC ENST00000257430 human ensembl 69_37n +1 known missense c.5992 p.E1998K 1.000 NULL pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo - no_errors APC HGNC ENSG00000134982 238 0 0.00 202 27 11.79 - - - ARHGAP26 0 genome.wustl.edu 37 5 142150475 142150475 + Missense_Mutation SNP T T C TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 5 142150475 142150475 T C SNP ARHGAP26 ENST00000274498 human ensembl 69_37n +1 known missense c.149 p.L50P 1.000 pfam_IRSp53/MIM_homology_IMD pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom - no_errors ARHGAP26 HGNC ENSG00000145819 38 0 0.00 26 4 12.90 - - - CARD16 0 genome.wustl.edu 37 11 104915136 104915136 + Missense_Mutation SNP G G A TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 11 104915136 104915136 G A SNP CARD16 ENST00000375706 human ensembl 69_37n -1 known missense c.257 p.T86M 0.000 pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD - no_errors CARD16 HGNC ENSG00000204397 320 0 0.00 327 42 11.35 - - - DMD 0 genome.wustl.edu 37 X 31525503 31525503 + Frame_Shift_Del DEL A A - TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e X 31525503 31525503 A - DEL DMD ENST00000357033 human ensembl 69_37n -1 known frame_shift_del c.8285 p.I2762fs 1.000 pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ - no_errors DMD HGNC ENSG00000198947 667 0 0.00 470 77 13.70 - - - HS6ST1 0 genome.wustl.edu 37 2 129025860 129025860 + Missense_Mutation SNP C C T TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 2 129025860 129025860 C T SNP HS6ST1 ENST00000259241 human ensembl 69_37n -1 known missense c.1112 p.R371H 1.000 NULL pfam_Sulfotransferase - no_errors HS6ST1 HGNC ENSG00000136720 24 0 0.00 29 5 14.71 - - - KDM4A 0 genome.wustl.edu 37 1 44137307 44137307 + Missense_Mutation SNP C C T TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 1 44137307 44137307 C T SNP KDM4A ENST00000372396 human ensembl 69_37n +1 known missense c.1495 p.L499F 0.950 NULL pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom - no_errors KDM4A HGNC ENSG00000066135 268 0 0.00 216 24 10.00 - - - MAGIX 0 genome.wustl.edu 37 X 49021218 49021218 + Silent SNP A A T TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e X 49021218 49021218 A T SNP MAGIX ENST00000412696 human ensembl 69_37n +1 known silent c.297 p.T99 0.000 superfamily_PDZ pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors MAGIX HGNC ENSG00000017621 93 0 0.00 107 16 12.80 - - - MIR486 0 genome.wustl.edu 37 8 41517976 41517976 + RNA SNP G G T TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 8 41517976 41517976 G T SNP MIR486 ENST00000408108 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors MIR486 HGNC ENSG00000221035 19 0 0.00 10 4 28.57 - - - PDCD6IP 0 genome.wustl.edu 37 3 33855109 33855109 + Missense_Mutation SNP C C T TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 3 33855109 33855109 C T SNP PDCD6IP ENST00000457054 human ensembl 69_37n +1 known missense c.323 p.S108F 1.000 pfam_BRO1_dom,pfscan_BRO1_dom pfam_BRO1_dom,pfscan_BRO1_dom - no_errors PDCD6IP HGNC ENSG00000170248 496 0 0.00 241 28 10.41 - - - PHACTR3 0 genome.wustl.edu 37 20 58322833 58322833 + Missense_Mutation SNP G G A TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 20 58322833 58322833 G A SNP PHACTR3 ENST00000371015 human ensembl 69_37n +1 known missense c.301 p.G101S 0.037 smart_RPEL_repeat,pfscan_RPEL_repeat pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat - no_errors PHACTR3 HGNC ENSG00000087495 255 0 0.00 269 31 10.30 - - - PRKD2 0 genome.wustl.edu 37 19 47204110 47204110 + Missense_Mutation SNP T T C TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 19 47204110 47204110 T C SNP PRKD2 ENST00000291281 human ensembl 69_37n -1 known missense c.1067 p.E356G 0.854 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom - no_errors PRKD2 HGNC ENSG00000105287 52 0 0.00 57 14 19.72 - - - RGPD3 0 genome.wustl.edu 37 2 107041128 107041128 + Silent SNP G G A TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 2 107041128 107041128 G A SNP RGPD3 ENST00000304514 human ensembl 69_37n -1 known silent c.3295 p.L1099 1.000 pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom - no_errors RGPD3 HGNC ENSG00000153165 279 0 0.00 177 30 14.49 - - - SLC1A6 0 genome.wustl.edu 37 19 15063812 15063812 + Missense_Mutation SNP A A G TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 19 15063812 15063812 A G SNP SLC1A6 ENST00000221742 human ensembl 69_37n -1 known missense c.1427 p.M476T 1.000 pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter - no_errors SLC1A6 HGNC ENSG00000105143 61 0 0.00 69 13 15.85 - - - SYNE2 0 genome.wustl.edu 37 14 64557671 64557671 + Missense_Mutation SNP A A G TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 14 64557671 64557671 A G SNP SYNE2 ENST00000358025 human ensembl 69_37n +1 known missense c.11881 p.M3961V 0.003 NULL pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE2 HGNC ENSG00000054654 161 0 0.00 80 11 12.09 - - - ZNF565 0 genome.wustl.edu 37 19 36673496 36673496 + Missense_Mutation SNP G G A TCGA-AR-A1AX-01A-11D-A12Q-09 TCGA-AR-A1AX-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 9bb2ccce-9687-4194-b8c5-207e5f18bc1e 19 36673496 36673496 G A SNP ZNF565 ENST00000304116 human ensembl 69_37n -1 known missense c.1372 p.R458C 0.007 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF565 HGNC ENSG00000196357 249 0 0.00 263 33 11.15 - - -