Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CDK10 0 genome.wustl.edu 37 16 89758243 89758243 + Missense_Mutation SNP A A G TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 16 89758243 89758243 A G SNP CDK10 ENST00000353379 human ensembl 69_37n +1 known missense c.365 p.Q122R 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors CDK10 HGNC ENSG00000185324 52 0 0.00 42 6 12.50 - - - CX3CL1 0 genome.wustl.edu 37 16 57413659 57413659 + Missense_Mutation SNP G G A TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 16 57413659 57413659 G A SNP CX3CL1 ENST00000006053 human ensembl 69_37n +1 known missense c.184 p.A62T 0.797 pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1 pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_fractalkine_CX3CL1 - no_errors CX3CL1 HGNC ENSG00000006210 33 0 0.00 39 5 11.36 - - - DDR2 0 genome.wustl.edu 37 1 162731140 162731140 + Missense_Mutation SNP G G A TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 1 162731140 162731140 G A SNP DDR2 ENST00000367921 human ensembl 69_37n +1 known missense c.995 p.R332Q 1.000 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors DDR2 HGNC ENSG00000162733 53 0 0.00 55 9 14.06 - - - GATA3 0 genome.wustl.edu 37 10 8115888 8115889 + Frame_Shift_Ins INS - - C TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 10 8115888 8115889 - C INS GATA3 ENST00000379328 human ensembl 69_37n +1 known frame_shift_ins c.1237_1238 p.S414fs 1.000:1.000 pirsf_TF_GATA-1/2/3 pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA - no_errors GATA3 HGNC ENSG00000107485 42 0 0.00 45 8 15.09 - - - GIGYF2 0 genome.wustl.edu 37 2 233655500 233655500 + Nonsense_Mutation SNP C C T TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 2 233655500 233655500 C T SNP GIGYF2 ENST00000373566 human ensembl 69_37n +1 known nonsense c.871 p.R291* 1.000 NULL pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF - no_errors GIGYF2 HGNC ENSG00000204120 69 0 0.00 72 10 12.20 - - - MYH2 0 genome.wustl.edu 37 17 10428881 10428881 + Missense_Mutation SNP G G A TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 17 10428881 10428881 G A SNP MYH2 ENST00000245503 human ensembl 69_37n -1 known missense c.4424 p.A1475V 1.000 pfam_Myosin_tail pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH2 HGNC ENSG00000125414 56 0 0.00 55 10 15.38 - - - RNA5-8SP6 0 genome.wustl.edu 37 Y 10037856 10037856 + RNA SNP G G A TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 Y 10037856 10037856 G A SNP RNA5-8SP6 ENST00000515896 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors RNA5-8SP6 HGNC ENSG00000251705 12 0 0.00 11 5 31.25 - - - SDK1 0 genome.wustl.edu 37 7 4272965 4272965 + Missense_Mutation SNP G G A TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 7 4272965 4272965 G A SNP SDK1 ENST00000404826 human ensembl 69_37n +1 known missense c.5906 p.R1969Q 0.825 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors SDK1 HGNC ENSG00000146555 17 0 0.00 28 7 20.00 - - - TMF1 0 genome.wustl.edu 37 3 69072340 69072340 + Silent SNP T T C TCGA-AR-A252-01A-11D-A167-09 TCGA-AR-A252-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx e800d9b3-32a1-48eb-840b-9a3bec9d1f6e 6f509e3d-b8f5-45de-8915-56c7759e3951 3 69072340 69072340 T C SNP TMF1 ENST00000543976 human ensembl 69_37n -1 known silent c.3279 p.Q1093 0.616 NULL pfam_TMF_TATA-bd,pfam_TMF_DNA-bd - no_errors TMF1 HGNC ENSG00000144747 112 0 0.00 69 9 11.39 - - -