Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ABRA 0 genome.wustl.edu 37 8 107782189 107782189 + Missense_Mutation SNP C C A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 8 107782189 107782189 C A SNP ABRA ENST00000311955 human ensembl 69_37n -1 known missense c.230 p.S77I 0.000 NULL NULL - no_errors ABRA HGNC ENSG00000174429 136 0 0.00 340 70 17.03 - - - ADAMTS12 0 genome.wustl.edu 37 5 33576497 33576497 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 5 33576497 33576497 G A SNP ADAMTS12 ENST00000504830 human ensembl 69_37n -1 known missense c.3634 p.P1212S 0.000 NULL pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS12 HGNC ENSG00000151388 268 1 0.37 268 32 10.67 - - - ADAMTSL1 0 genome.wustl.edu 37 9 18776871 18776871 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 9 18776871 18776871 G A SNP ADAMTSL1 ENST00000380548 human ensembl 69_37n +1 novel missense c.2644 p.V882M 0.171 pfscan_Ig-like pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTSL1 HGNC ENSG00000178031 16 0 0.00 10 13 56.52 - - - APOL5 0 genome.wustl.edu 37 22 36116635 36116635 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 22 36116635 36116635 G A SNP APOL5 ENST00000249044 human ensembl 69_37n +1 known missense c.76 p.E26K 0.000 NULL pfam_ApoL - no_errors APOL5 HGNC ENSG00000128313 98 0 0.00 145 46 24.08 - - - DBC1 0 genome.wustl.edu 37 9 121930047 121930047 + Missense_Mutation SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 9 121930047 121930047 C T SNP DBC1 ENST00000265922 human ensembl 69_37n -1 known missense c.1601 p.R534H 1.000 NULL pfam_MACPF,smart_MACPF - no_errors DBC1 HGNC ENSG00000078725 111 0 0.00 68 55 44.72 - - - DNAI2 0 genome.wustl.edu 37 17 72283239 72283239 + Splice_Site DEL T T - TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 17 72283239 72283239 T - DEL DNAI2 ENST00000311014 human ensembl 69_37n +1 known splice_site_del c.467+2 e3+2 1.000 - - - no_errors DNAI2 HGNC ENSG00000171595 60 0 0.00 121 465 75.61 - - - ENSG00000226232 0 genome.wustl.edu 37 16 70010517 70010519 + In_Frame_Del DEL TGT TGT - TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 TGT TGT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 16 70010517 70010519 TGT - DEL ENSG00000226232 ENST00000532298 human ensembl 69_37n -1 novel in_frame_del c.761_759 p.Q253in_frame_del 0.600:0.610:0.620 pfam_NPIP pfam_NPIP - no_errors RP11-419C5.2 Clone_based_vega_gene ENSG00000226232 11 0 0.00 8 5 38.46 - - - GJD3 0 genome.wustl.edu 37 17 38519722 38519722 + Nonsense_Mutation SNP C C A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 17 38519722 38519722 C A SNP GJD3 ENST00000337376 human ensembl 69_37n -1 known nonsense c.346 p.G116* 0.000 NULL pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin - no_errors GJD3 HGNC ENSG00000183153 11 0 0.00 3 5 62.50 - - - GPR1 0 genome.wustl.edu 37 2 207041836 207041836 + Missense_Mutation SNP A A C TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 2 207041836 207041836 A C SNP GPR1 ENST00000407325 human ensembl 69_37n -1 known missense c.136 p.C46G 0.011 prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_GPR1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_ATII_rcpt - no_errors GPR1 HGNC ENSG00000183671 119 0 0.00 177 46 20.63 - - - GUCY2D 0 genome.wustl.edu 37 17 7910008 7910008 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 17 7910008 7910008 G A SNP GUCY2D ENST00000254854 human ensembl 69_37n +1 known missense c.1354 p.D452N 0.981 NULL pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Haem_no_assoc-bd,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_cat_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors GUCY2D HGNC ENSG00000132518 31 0 0.00 22 4 15.38 - - - HECTD4 0 genome.wustl.edu 37 12 112600859 112600860 + Frame_Shift_Ins INS - - G TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 12 112600859 112600860 - G INS HECTD4 ENST00000377560 human ensembl 69_37n -1 known frame_shift_ins c.12591_12590 p.D4198fs 0.555:1.000 pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT - no_errors HECTD4 HGNC ENSG00000173064 33 0 0.00 33 4 10.81 - - - IL1RN 0 genome.wustl.edu 37 2 113888708 113888708 + Missense_Mutation SNP G G T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 2 113888708 113888708 G T SNP IL1RN ENST00000259206 human ensembl 69_37n +1 known missense c.301 p.G101C 0.976 pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_IL_rcpt_IL1RA,prints_Interleukin_1 pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_IL_rcpt_IL1RA,prints_Interleukin_1 - no_errors IL1RN HGNC ENSG00000136689 82 0 0.00 106 52 32.91 - - - KIF2A 0 genome.wustl.edu 37 5 61668293 61668293 + Missense_Mutation SNP G G C TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 5 61668293 61668293 G C SNP KIF2A ENST00000407818 human ensembl 69_37n +1 known missense c.1675 p.D559H 1.000 smart_Kinesin_motor_dom pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF2A HGNC ENSG00000068796 217 0 0.00 123 108 46.75 - - - LCT 0 genome.wustl.edu 37 2 136564944 136564945 + Frame_Shift_Ins INS - - A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 2 136564944 136564945 - A INS LCT ENST00000264162 human ensembl 69_37n -1 known frame_shift_ins c.3927_3926 p.L1310fs 0.983:0.976 pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 - no_errors LCT HGNC ENSG00000115850 51 0 0.00 72 30 29.41 - - - LRRC43 0 genome.wustl.edu 37 12 122685345 122685346 + Frame_Shift_Ins INS - - C TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 12 122685345 122685346 - C INS LRRC43 ENST00000339777 human ensembl 69_37n +1 known frame_shift_ins c.1673_1674 p.I561fs 1.000:0.997 NULL NULL - no_errors LRRC43 HGNC ENSG00000158113 30 0 0.00 26 3 10.34 - - - LTF 0 genome.wustl.edu 37 3 46492156 46492156 + Silent SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 3 46492156 46492156 C T SNP LTF ENST00000231751 human ensembl 69_37n -1 known silent c.711 p.L237 0.989 pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60 - no_errors LTF HGNC ENSG00000012223 85 0 0.00 61 10 14.08 - - - MUC4 0 genome.wustl.edu 37 3 195497194 195497194 + Missense_Mutation SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 3 195497194 195497194 C T SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.13291 p.E4431K 0.989 smart_Nidogen_extracell_dom pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 36 0 0.00 78 24 23.30 - - - MUC4 0 genome.wustl.edu 37 3 195510725 195510725 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 3 195510725 195510725 G A SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.7726 p.P2576S 0.025 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 29 0 0.00 31 5 13.89 - - - MYO5B 0 genome.wustl.edu 37 18 47352891 47352891 + Missense_Mutation SNP A A C TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 18 47352891 47352891 A C SNP MYO5B ENST00000285039 human ensembl 69_37n -1 known missense c.5497 p.S1833A 1.000 NULL pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYO5B HGNC ENSG00000167306 234 0 0.00 203 78 27.76 - - - NLK 0 genome.wustl.edu 37 17 26495615 26495615 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 17 26495615 26495615 G A SNP NLK ENST00000407008 human ensembl 69_37n +1 known missense c.979 p.V327M 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors NLK HGNC ENSG00000087095 117 0 0.00 78 36 31.58 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 75 0 0.00 115 31 21.23 - - - PRAMEF13 0 genome.wustl.edu 37 1 13448451 13448451 + Missense_Mutation SNP C C G TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 1 13448451 13448451 C G SNP PRAMEF13 ENST00000376132 human ensembl 69_37n -1 known missense c.1024 p.A342P 0.001 NULL NULL - no_errors PRAMEF13 HGNC ENSG00000204495 150 0 0.00 136 40 22.73 - - - PRICKLE1 0 genome.wustl.edu 37 12 42853698 42853698 + Silent SNP A A T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 12 42853698 42853698 A T SNP PRICKLE1 ENST00000345127 human ensembl 69_37n -1 known silent c.2409 p.S803 0.043 NULL pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM - no_errors PRICKLE1 HGNC ENSG00000139174 385 0 0.00 372 187 33.45 - - - RIC8A 0 genome.wustl.edu 37 11 212869 212869 + Missense_Mutation SNP A A G TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 11 212869 212869 A G SNP RIC8A ENST00000325207 human ensembl 69_37n +1 known missense c.1261 p.N421D 1.000 pfam_Gua_nucleotide_exch_fac_Ric8,prints_Synembryn pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn - no_errors RIC8A HGNC ENSG00000177963 40 0 0.00 14 13 48.15 - - - ROR1 0 genome.wustl.edu 37 1 64643348 64643348 + Missense_Mutation SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 1 64643348 64643348 G A SNP ROR1 ENST00000371079 human ensembl 69_37n +1 known missense c.1624 p.V542I 1.000 pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors ROR1 HGNC ENSG00000185483 108 0 0.00 99 52 34.44 - - - RTTN 0 genome.wustl.edu 37 18 67863738 67863738 + Silent SNP G G A TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 18 67863738 67863738 G A SNP RTTN ENST00000255674 human ensembl 69_37n -1 known silent c.840 p.H280 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors RTTN HGNC ENSG00000176225 127 0 0.00 138 44 24.18 - - - SKIV2L 0 genome.wustl.edu 37 6 31937382 31937383 + Frame_Shift_Ins INS - - G TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 6 31937382 31937383 - G INS SKIV2L ENST00000375394 human ensembl 69_37n +1 known frame_shift_ins c.3631_3632 p.A1213fs 1.000:1.000 pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1 pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors SKIV2L HGNC ENSG00000204351 19 0 0.00 16 3 15.79 - - - TBC1D2B 0 genome.wustl.edu 37 15 78316850 78316850 + Missense_Mutation SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 15 78316850 78316850 C T SNP TBC1D2B ENST00000300584 human ensembl 69_37n -1 known missense c.1118 p.R373Q 0.992 NULL pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D2B HGNC ENSG00000167202 91 0 0.00 110 16 12.70 - - - TP53 0 genome.wustl.edu 37 17 7577018 7577018 + Splice_Site SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 17 7577018 7577018 C T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known splice_site c.919+1 e7+1 0.976 - - - no_errors TP53 HGNC ENSG00000141510 347 0 0.00 170 143 45.69 - - - VPS39 0 genome.wustl.edu 37 15 42458983 42458983 + Silent SNP C C T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 15 42458983 42458983 C T SNP VPS39 ENST00000348544 human ensembl 69_37n -1 known silent c.1539 p.G513 1.000 pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron - no_errors VPS39 HGNC ENSG00000166887 122 0 0.00 112 56 33.14 - - - ZNF3 0 genome.wustl.edu 37 7 99673193 99673193 + Missense_Mutation SNP G G C TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 7 99673193 99673193 G C SNP ZNF3 ENST00000299667 human ensembl 69_37n -1 known missense c.116 p.A39G 1.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF3 HGNC ENSG00000166526 341 0 0.00 300 123 29.08 - - - ZNF439 0 genome.wustl.edu 37 19 11979022 11979022 + Nonsense_Mutation SNP A A T TCGA-B6-A0IE-01A-11W-A050-09 TCGA-B6-A0IE-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 4cb39f50-5031-4b08-baa3-1a366ada6514 513424ac-0f6a-498a-b610-34f825d7dc63 19 11979022 11979022 A T SNP ZNF439 ENST00000304030 human ensembl 69_37n +1 known nonsense c.1138 p.K380* 1.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF439 HGNC ENSG00000171291 125 0 0.00 104 51 32.90 - - -