Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANKH 0 genome.wustl.edu 37 5 14716838 14716838 + Missense_Mutation SNP A A T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 5 14716838 14716838 A T SNP ANKH ENST00000284268 human ensembl 69_37n -1 known missense c.1118 p.I373N 1.000 NULL pfam_ANKH - no_errors ANKH HGNC ENSG00000154122 80 0 0.00 82 16 16.00 - - - ATAD5 0 genome.wustl.edu 37 17 29220890 29220890 + Silent SNP T T C TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 17 29220890 29220890 T C SNP ATAD5 ENST00000321990 human ensembl 69_37n +1 known silent c.5019 p.G1673 1.000 NULL pfam_ATPase_AAA_core,smart_AAA+_ATPase - no_errors ATAD5 HGNC ENSG00000176208 292 0 0.00 187 42 18.34 - - - C2CD4C 0 genome.wustl.edu 37 19 408200 408200 + Silent SNP G G C TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 19 408200 408200 G C SNP C2CD4C ENST00000332235 human ensembl 69_37n -1 known silent c.162 p.P54 0.916 NULL pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting - no_errors C2CD4C HGNC ENSG00000183186 10 0 0.00 31 15 31.91 - - - CAPN11 0 genome.wustl.edu 37 6 44150736 44150736 + Missense_Mutation SNP G G T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 6 44150736 44150736 G T SNP CAPN11 ENST00000398776 human ensembl 69_37n +1 known missense c.1997 p.R666L 0.995 smart_EF_hand_Ca-bd,pfscan_EF_HAND_2 pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease - no_errors CAPN11 HGNC ENSG00000137225 47 0 0.00 120 23 15.97 - - - CCR2 0 genome.wustl.edu 37 3 46399915 46399915 + Silent SNP C C T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 3 46399915 46399915 C T SNP CCR2 ENST00000292301 human ensembl 69_37n +1 known silent c.897 p.C299 1.000 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2 - no_errors CCR2 HGNC ENSG00000121807 82 0 0.00 93 35 27.34 - - - CD1D 0 genome.wustl.edu 37 1 158150918 158150918 + Silent SNP C C T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 1 158150918 158150918 C T SNP CD1D ENST00000368171 human ensembl 69_37n +1 known silent c.27 p.L9 0.003 NULL pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like - no_errors CD1D HGNC ENSG00000158473 8 0 0.00 42 14 25.00 - - - CHAF1A 0 genome.wustl.edu 37 19 4428843 4428843 + Silent SNP C C T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 19 4428843 4428843 C T SNP CHAF1A ENST00000301280 human ensembl 69_37n +1 known silent c.1560 p.S520 0.103 NULL pfam_CAF1A,pfam_CAF-1_p150 - no_errors CHAF1A HGNC ENSG00000167670 18 0 0.00 23 13 36.11 - - - EEF1A1 0 genome.wustl.edu 37 6 74228163 74228163 + Missense_Mutation SNP C C G TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 6 74228163 74228163 C G SNP EEF1A1 ENST00000309268 human ensembl 69_37n -1 known missense c.943 p.V315L 1.000 pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc - no_errors EEF1A1 HGNC ENSG00000156508 39 0 0.00 68 8 10.53 - - - FAM157B 0 genome.wustl.edu 37 9 141107536 141107537 + RNA INS - - GCA TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 9 141107536 141107537 - GCA INS FAM157B ENST00000446912 human ensembl 69_37n +1 known rna NULL NULL 0.033:0.036 - - - no_errors FAM157B HGNC ENSG00000233013 28 0 0.00 68 8 10.53 - - - FAM91A1 0 genome.wustl.edu 37 8 124796718 124796718 + Missense_Mutation SNP C C T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 8 124796718 124796718 C T SNP FAM91A1 ENST00000334705 human ensembl 69_37n +1 known missense c.712 p.L238F 1.000 NULL NULL - no_errors FAM91A1 HGNC ENSG00000176853 298 0 0.00 83 45 35.16 - - - FCGBP 0 genome.wustl.edu 37 19 40392719 40392719 + Silent SNP G G A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 19 40392719 40392719 G A SNP FCGBP ENST00000221347 human ensembl 69_37n -1 known silent c.7785 p.N2595 0.999 pfam_VWF_type-D,smart_VWF_type-D pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out - no_errors FCGBP HGNC ENSG00000090920 8 0 0.00 40 19 32.20 - - - FSTL5 0 genome.wustl.edu 37 4 162577518 162577518 + Missense_Mutation SNP T T C TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 4 162577518 162577518 T C SNP FSTL5 ENST00000306100 human ensembl 69_37n -1 known missense c.856 p.N286D 0.978 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like - no_errors FSTL5 HGNC ENSG00000168843 174 0 0.00 77 21 21.43 - - - GATA3 0 genome.wustl.edu 37 10 8111433 8111434 + Splice_Site DEL CA CA - TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 10 8111433 8111434 CA - DEL GATA3 ENST00000379328 human ensembl 69_37n +1 known splice_site_del c.925-3_925-2 e4-2 1.000:1.000 - - - no_errors GATA3 HGNC ENSG00000107485 42 0 0 88 20 18.52 - - - IKBKE 0 genome.wustl.edu 37 1 206648210 206648210 + Silent SNP C C T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 1 206648210 206648210 C T SNP IKBKE ENST00000367120 human ensembl 69_37n +1 known silent c.231 p.G77 0.995 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors IKBKE HGNC ENSG00000143466 26 0 0.00 118 35 22.73 - - - KCTD10 0 genome.wustl.edu 37 12 109895450 109895450 + Missense_Mutation SNP T T G TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 12 109895450 109895450 T G SNP KCTD10 ENST00000228495 human ensembl 69_37n -1 known missense c.512 p.K171T 1.000 NULL pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like - no_errors KCTD10 HGNC ENSG00000110906 291 1 0.34 353 118 25.05 - - - MCM4 0 genome.wustl.edu 37 8 48882407 48882407 + Silent SNP G G A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 8 48882407 48882407 G A SNP MCM4 ENST00000262105 human ensembl 69_37n +1 known silent c.1224 p.V408 0.995 superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase - no_errors MCM4 HGNC ENSG00000104738 74 0 0.00 152 27 15.00 - - - OR51V1 0 genome.wustl.edu 37 11 5221911 5221911 + Missense_Mutation SNP A A G TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 11 5221911 5221911 A G SNP OR51V1 ENST00000321255 human ensembl 69_37n -1 known missense c.20 p.M7T 0.000 NULL pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR51V1 HGNC ENSG00000176742 55 0 0.00 59 18 23.38 - - - PDE9A 0 genome.wustl.edu 37 21 44106372 44106372 + Missense_Mutation SNP G G A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 21 44106372 44106372 G A SNP PDE9A ENST00000291539 human ensembl 69_37n +1 known missense c.140 p.R47Q 1.000 NULL pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE9A HGNC ENSG00000160191 9 0 0.00 53 21 28.38 - - - RABEPK 0 genome.wustl.edu 37 9 127994885 127994885 + Silent SNP A A G TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 9 127994885 127994885 A G SNP RABEPK ENST00000373538 human ensembl 69_37n +1 known silent c.687 p.K229 0.887 pfam_Kelch_1 pfam_Kelch_2,pfam_Kelch_1 - no_errors RABEPK HGNC ENSG00000136933 23 0 0.00 56 25 30.86 - - - SLFN13 0 genome.wustl.edu 37 17 33768827 33768827 + Silent SNP G G A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 17 33768827 33768827 G A SNP SLFN13 ENST00000285013 human ensembl 69_37n -1 known silent c.1677 p.L559 0.279 NULL pfam_ATPase_AAA-4,pfam_DUF2075 - no_errors SLFN13 HGNC ENSG00000154760 10 0 0.00 7 4 36.36 - - - TANC2 0 genome.wustl.edu 37 17 61489359 61489359 + Nonsense_Mutation SNP G G A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 17 61489359 61489359 G A SNP TANC2 ENST00000583356 human ensembl 69_37n +1 putative nonsense c.3330 p.W1110* 1.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt - pseudogene:no_stop_codon:bad_bp_length_for_coding_region TANC2 HGNC ENSG00000170921 50 0 0.00 84 28 25.00 - - - WDR74 0 genome.wustl.edu 37 11 62603453 62603453 + Nonsense_Mutation SNP T T A TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 11 62603453 62603453 T A SNP WDR74 ENST00000278856 human ensembl 69_37n -1 known nonsense c.349 p.K117* 0.358 superfamily_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat - no_errors WDR74 HGNC ENSG00000133316 76 0 0.00 154 44 22.22 - - - ZDHHC3 0 genome.wustl.edu 37 3 44970893 44970893 + Missense_Mutation SNP G G T TCGA-B6-A0WS-01A-11D-A10Y-09 TCGA-B6-A0WS-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 271d1985-1b15-4828-8261-4415ab048de9 ad236498-9d88-4caf-afd9-4d7f068ceaa3 3 44970893 44970893 G T SNP ZDHHC3 ENST00000296127 human ensembl 69_37n -1 known missense c.730 p.L244I 1.000 NULL pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase - no_errors ZDHHC3 HGNC ENSG00000163812 53 0 0.00 93 25 21.19 - - -