Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AGXT2 0 genome.wustl.edu 37 5 35013131 35013131 + Silent SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 5 35013131 35013131 C T SNP AGXT2 ENST00000231420 human ensembl 69_37n -1 known silent c.1116 p.A372 0.272 pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom - no_errors AGXT2 HGNC ENSG00000113492 22 0 0.00 12 13 52.00 - - - ATP8B2 0 genome.wustl.edu 37 1 154303935 154303935 + Missense_Mutation SNP G G A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 1 154303935 154303935 G A SNP ATP8B2 ENST00000368489 human ensembl 69_37n +1 known missense c.418 p.D140N 1.000 pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP8B2 HGNC ENSG00000143515 27 0 0.00 28 39 58.21 - - - CYP4Z1 0 genome.wustl.edu 37 1 47533338 47533338 + Missense_Mutation SNP A A C TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 1 47533338 47533338 A C SNP CYP4Z1 ENST00000334194 human ensembl 69_37n +1 known missense c.176 p.E59A 0.060 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II - no_errors CYP4Z1 HGNC ENSG00000186160 28 0 0.00 27 19 41.30 - - - FCGR2B 0 genome.wustl.edu 37 1 161641360 161641360 + Silent SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 1 161641360 161641360 C T SNP FCGR2B ENST00000358671 human ensembl 69_37n +1 known silent c.312 p.N104 0.000 smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors FCGR2B HGNC ENSG00000072694 30 0 0.00 37 13 26.00 - - - GATA3 0 genome.wustl.edu 37 10 8115862 8115863 + Frame_Shift_Ins INS - - C TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 10 8115862 8115863 - C INS GATA3 ENST00000379328 human ensembl 69_37n +1 known frame_shift_ins c.1211_1212 p.S405fs 1.000:1.000 pirsf_TF_GATA-1/2/3 pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA - no_errors GATA3 HGNC ENSG00000107485 59 0 0.00 22 5 18.52 - - - GRIK2 0 genome.wustl.edu 37 6 102337557 102337557 + Nonsense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 6 102337557 102337557 C T SNP GRIK2 ENST00000421544 human ensembl 69_37n +1 known nonsense c.1567 p.R523* 1.000 pfam_SBP_bac_3,smart_Iontro_glu_rcpt pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIK2 HGNC ENSG00000164418 36 0 0.00 51 18 26.09 - - - IFT80 0 genome.wustl.edu 37 3 160095282 160095282 + Silent SNP T T A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 3 160095282 160095282 T A SNP IFT80 ENST00000326448 human ensembl 69_37n -1 known silent c.306 p.V102 0.850 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT80 HGNC ENSG00000068885 94 0 0.00 114 60 34.48 - - - KCTD3 0 genome.wustl.edu 37 1 215759936 215759936 + Missense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 1 215759936 215759936 C T SNP KCTD3 ENST00000259154 human ensembl 69_37n +1 known missense c.725 p.P242L 1.000 NULL pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like - no_errors KCTD3 HGNC ENSG00000136636 64 0 0.00 52 43 45.26 - - - KIAA0182 0 genome.wustl.edu 37 16 85701963 85701963 + Frame_Shift_Del DEL G G - TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 16 85701963 85701963 G - DEL KIAA0182 ENST00000253458 human ensembl 69_37n +1 known frame_shift_del c.3348 p.E1117fs 0.370 NULL pfam_DUF3736 - no_errors KIAA0182 HGNC ENSG00000131149 23 0 0.00 14 10 40.00 - - - MAP2K4 0 genome.wustl.edu 37 17 11998898 11998898 + Missense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 17 11998898 11998898 C T SNP MAP2K4 ENST00000415385 human ensembl 69_37n +1 known missense c.433 p.R145W 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors MAP2K4 HGNC ENSG00000065559 118 0 0.00 97 64 39.75 - - - MLL3 0 genome.wustl.edu 37 7 151945601 151945601 + Nonsense_Mutation SNP C C A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 7 151945601 151945601 C A SNP MLL3 ENST00000355193 human ensembl 69_37n -1 known nonsense c.1918 p.E640* 0.108 NULL pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING - no_errors MLL3 HGNC ENSG00000055609 31 0 0.00 49 32 39.51 - - - MUC16 0 genome.wustl.edu 37 19 9005718 9005718 + Missense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 19 9005718 9005718 C T SNP MUC16 ENST00000397910 human ensembl 69_37n -1 known missense c.39688 p.G13230R 0.016 pfam_SEA pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC16 HGNC ENSG00000181143 21 0 0.00 24 14 35.90 - - - RNF217 0 genome.wustl.edu 37 6 125397899 125397899 + Nonsense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 6 125397899 125397899 C T SNP RNF217 ENST00000560949 human ensembl 69_37n +1 known nonsense c.673 p.R225* 1.000 smart_Znf_C6HC pfam_Znf_C6HC,smart_Znf_C6HC - no_errors RNF217 HGNC ENSG00000146373 37 0 0.00 43 36 45.57 - - - SACS 0 genome.wustl.edu 37 13 23909753 23909753 + Missense_Mutation SNP C C A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 13 23909753 23909753 C A SNP SACS ENST00000382292 human ensembl 69_37n -1 known missense c.8262 p.K2754N 0.021 NULL pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup - no_errors SACS HGNC ENSG00000151835 45 0 0.00 69 28 28.87 - - - SLC22A25 0 genome.wustl.edu 37 11 62931501 62931501 + Missense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 11 62931501 62931501 C T SNP SLC22A25 ENST00000306494 human ensembl 69_37n -1 known missense c.1439 p.G480E 0.000 pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC22A25 HGNC ENSG00000196600 40 0 0.00 46 22 32.35 - - - SSR4 0 genome.wustl.edu 37 X 153063795 153063795 + Missense_Mutation SNP C C T TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a X 153063795 153063795 C T SNP SSR4 ENST00000447375 human ensembl 69_37n +1 known missense c.269 p.T90M 0.177 pfam_TRAP-delta pfam_TRAP-delta - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region SSR4 HGNC ENSG00000180879 25 0 0.00 17 20 54.05 - - - VIL1 0 genome.wustl.edu 37 2 219301940 219301940 + Missense_Mutation SNP C C A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 2 219301940 219301940 C A SNP VIL1 ENST00000248444 human ensembl 69_37n +1 known missense c.2065 p.R689S 1.000 pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece - no_errors VIL1 HGNC ENSG00000127831 18 0 0.00 16 7 30.43 - - - WDR3 0 genome.wustl.edu 37 1 118491067 118491067 + Missense_Mutation SNP C C A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 1 118491067 118491067 C A SNP WDR3 ENST00000349139 human ensembl 69_37n +1 known missense c.1462 p.L488M 0.996 pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR3 HGNC ENSG00000065183 37 0 0.00 34 30 46.88 - - - ZNF229 0 genome.wustl.edu 37 19 44933794 44933794 + Nonsense_Mutation SNP G G A TCGA-B6-A0X4-01A-11D-A10G-09 TCGA-B6-A0X4-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx edbe95af-e727-4d0f-a2a4-a3c9f2afa901 082a4db7-4d3f-4e2f-865f-f322b7b8da7a 19 44933794 44933794 G A SNP ZNF229 ENST00000588931 human ensembl 69_37n -1 known nonsense c.1162 p.R388* 0.004 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF229 HGNC ENSG00000167383 37 0 0.00 23 31 57.41 - - -