Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ATP1B1 0 genome.wustl.edu 37 1 169094123 169094124 + Frame_Shift_Ins INS - - T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 1 169094123 169094124 - T INS ATP1B1 ENST00000367815 human ensembl 69_37n +1 known frame_shift_ins c.228_229 p.L76fs 0.995:0.992 pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu - no_errors ATP1B1 HGNC ENSG00000143153 268 0 0.00 308 52 14.44 - - - BRPF3 0 genome.wustl.edu 37 6 36181879 36181879 + Missense_Mutation SNP A A G TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 6 36181879 36181879 A G SNP BRPF3 ENST00000357641 human ensembl 69_37n +1 known missense c.2705 p.N902S 0.986 NULL pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain - no_errors BRPF3 HGNC ENSG00000096070 85 0 0.00 59 24 28.92 - - - BZRAP1 0 genome.wustl.edu 37 17 56386383 56386384 + Frame_Shift_Ins INS - - TT TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 17 56386383 56386384 - TT INS BZRAP1 ENST00000355701 human ensembl 69_37n -1 known frame_shift_ins c.4250_4249 p.S1417fs 0.000:0.001 NULL pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain - no_errors BZRAP1 HGNC ENSG00000005379 19 0 0.00 10 3 23.08 - - - DDX17 0 genome.wustl.edu 37 22 38890089 38890089 + Missense_Mutation SNP G G T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 22 38890089 38890089 G T SNP DDX17 ENST00000396821 human ensembl 69_37n -1 known missense c.1262 p.T421K 1.000 pfscan_Helicase_C pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX17 HGNC ENSG00000100201 361 1 0.28 198 49 19.84 - - - DNAAF1 0 genome.wustl.edu 37 16 84203706 84203706 + Silent SNP G G A TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 16 84203706 84203706 G A SNP DNAAF1 ENST00000378553 human ensembl 69_37n +1 known silent c.1272 p.S424 0.000 NULL NULL - no_errors DNAAF1 HGNC ENSG00000154099 103 0 0.00 48 14 22.58 - - - FZD3 0 genome.wustl.edu 37 8 28385071 28385071 + Missense_Mutation SNP A A G TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 8 28385071 28385071 A G SNP FZD3 ENST00000240093 human ensembl 69_37n +1 known missense c.794 p.N265S 1.000 pfam_Frizzled,pfscan_GPCR_2-like pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like - no_errors FZD3 HGNC ENSG00000104290 173 0 0.00 149 43 22.40 - - - GATA3 0 genome.wustl.edu 37 10 8111433 8111434 + Splice_Site DEL CA CA - TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 10 8111433 8111434 CA - DEL GATA3 ENST00000379328 human ensembl 69_37n +1 known splice_site_del c.925-3_925-2 e4-2 1.000:1.000 - - - no_errors GATA3 HGNC ENSG00000107485 131 0 0 104 32 23.53 - - - NCOR1 0 genome.wustl.edu 37 17 16012217 16012217 + Nonsense_Mutation SNP T T A TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 17 16012217 16012217 T A SNP NCOR1 ENST00000268712 human ensembl 69_37n -1 known nonsense c.2065 p.K689* 1.000 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR1 HGNC ENSG00000141027 273 0 0.00 129 142 52.40 - - - NGEF 0 genome.wustl.edu 37 2 233759485 233759485 + Missense_Mutation SNP C C T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 2 233759485 233759485 C T SNP NGEF ENST00000264051 human ensembl 69_37n -1 known missense c.970 p.V324M 1.000 pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain - no_errors NGEF HGNC ENSG00000066248 46 0 0.00 19 15 44.12 - - - NUP160 0 genome.wustl.edu 37 11 47804690 47804690 + Missense_Mutation SNP C C T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 11 47804690 47804690 C T SNP NUP160 ENST00000378460 human ensembl 69_37n -1 known missense c.4051 p.V1351M 1.000 NULL pfam_Nucleoporin_Nup160 - no_errors NUP160 HGNC ENSG00000030066 516 0 0.00 348 101 22.49 - - - PABPC4L 0 genome.wustl.edu 37 4 135121899 135121899 + Silent SNP C C T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 4 135121899 135121899 C T SNP PABPC4L ENST00000529122 human ensembl 69_37n -1 known silent c.450 p.L150 0.663 tigrfam_PABP_1234 pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234 - no_errors PABPC4L HGNC ENSG00000254535 148 0 0.00 130 59 31.22 - - - PDE11A 0 genome.wustl.edu 37 2 178936669 178936669 + Missense_Mutation SNP G G A TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 2 178936669 178936669 G A SNP PDE11A ENST00000286063 human ensembl 69_37n -1 known missense c.496 p.P166S 1.000 NULL pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase - no_errors PDE11A HGNC ENSG00000128655 82 0 0.00 73 15 17.05 - - - PIK3CA 0 genome.wustl.edu 37 3 178921553 178921553 + Missense_Mutation SNP T T A TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 3 178921553 178921553 T A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1035 p.N345K 1.000 superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 135 0 0.00 125 23 15.54 - - - PPP1R13B 0 genome.wustl.edu 37 14 104206651 104206651 + Missense_Mutation SNP G G A TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 14 104206651 104206651 G A SNP PPP1R13B ENST00000202556 human ensembl 69_37n -1 known missense c.2102 p.A701V 1.000 NULL pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain - no_errors PPP1R13B HGNC ENSG00000088808 57 0 0.00 46 14 23.33 - - - RUNX1 0 genome.wustl.edu 37 21 36252994 36252995 + Frame_Shift_Ins INS - - CC TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 21 36252994 36252995 - CC INS RUNX1 ENST00000300305 human ensembl 69_37n -1 known frame_shift_ins c.368_367 p.D123fs 0.999:1.000 pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt - no_errors RUNX1 HGNC ENSG00000159216 227 0 0.00 165 43 20.67 - - - SP140L 0 genome.wustl.edu 37 2 231265764 231265764 + Missense_Mutation SNP C C T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 2 231265764 231265764 C T SNP SP140L ENST00000415673 human ensembl 69_37n +1 known missense c.1408 p.P470S 0.092 superfamily_Bromodomain,smart_Bromodomain pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain - no_errors SP140L HGNC ENSG00000185404 41 0 0.00 35 11 23.91 - - - TEX15 0 genome.wustl.edu 37 8 30705430 30705430 + Silent SNP C C T TCGA-BH-A0H3-01A-11D-A12Q-09 TCGA-BH-A0H3-11A-12D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 e4874060-606c-419f-b684-64fe20e237e7 8 30705430 30705430 C T SNP TEX15 ENST00000256246 human ensembl 69_37n -1 known silent c.1104 p.G368 0.005 NULL NULL - no_errors TEX15 HGNC ENSG00000133863 490 0 0.00 254 104 29.05 - - -