Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADPGK 0 genome.wustl.edu 37 15 73048722 73048722 + Missense_Mutation SNP T T C TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 15 73048722 73048722 T C SNP ADPGK ENST00000311669 human ensembl 69_37n -1 known missense c.710 p.N237S 1.000 pfam_ADP_PFK/GK pfam_ADP_PFK/GK - no_errors ADPGK HGNC ENSG00000159322 347 0 0.00 170 95 35.85 - - - CDAN1 0 genome.wustl.edu 37 15 43023885 43023886 + Frame_Shift_Ins INS - - C TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 15 43023885 43023886 - C INS CDAN1 ENST00000356231 human ensembl 69_37n -1 known frame_shift_ins c.1672_1671 p.P557fs 1.000:0.026 NULL NULL - no_errors CDAN1 HGNC ENSG00000140326 36 0 0.00 18 2 10.00 - - - CDH3 0 genome.wustl.edu 37 16 68714903 68714903 + Silent SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 16 68714903 68714903 C T SNP CDH3 ENST00000264012 human ensembl 69_37n +1 known silent c.900 p.A300 0.291 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH3 HGNC ENSG00000062038 55 0 0.00 65 14 17.72 - - - CTSB 0 genome.wustl.edu 37 8 11703257 11703257 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 8 11703257 11703257 C T SNP CTSB ENST00000353047 human ensembl 69_37n -1 known missense c.835 p.A279T 1.000 pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C - no_errors CTSB HGNC ENSG00000164733 44 0 0.00 22 16 42.11 - - - EPHA1 0 genome.wustl.edu 37 7 143096020 143096021 + Frame_Shift_Ins INS - - G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 7 143096020 143096021 - G INS EPHA1 ENST00000275815 human ensembl 69_37n -1 known frame_shift_ins c.1010_1009 p.R337fs 0.023:0.149 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom - no_errors EPHA1 HGNC ENSG00000146904 22 0 0.00 9 2 18.18 - - - FAM187B 0 genome.wustl.edu 37 19 35716083 35716084 + Frame_Shift_Ins INS - - G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 19 35716083 35716084 - G INS FAM187B ENST00000324675 human ensembl 69_37n -1 known frame_shift_ins c.755_754 p.L252fs 0.372:0.160 NULL NULL - no_errors FAM187B HGNC ENSG00000177558 9 0 0.00 7 2 22.22 - - - FN3KRP 0 genome.wustl.edu 37 17 80674690 80674691 + Frame_Shift_Ins INS - - G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 17 80674690 80674691 - G INS FN3KRP ENST00000269373 human ensembl 69_37n +1 known frame_shift_ins c.59_60 p.G23fs 0.730:0.064 pfam_Fructo-/Ketosamine-3-kinase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase - no_errors FN3KRP HGNC ENSG00000141560 10 0 0.00 8 2 20.00 - - - GGT3P 0 genome.wustl.edu 37 22 18766253 18766253 + RNA SNP T T C TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 22 18766253 18766253 T C SNP GGT3P ENST00000412448 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors GGT3P HGNC ENSG00000197421 10 0 0.00 3 2 40.00 - - - HECW2 0 genome.wustl.edu 37 2 197081794 197081794 + Missense_Mutation SNP T T C TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 2 197081794 197081794 T C SNP HECW2 ENST00000260983 human ensembl 69_37n -1 known missense c.4432 p.I1478V 1.000 pfam_HECT,smart_HECT,pfscan_HECT pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP - no_errors HECW2 HGNC ENSG00000138411 286 0 0.00 104 70 40.23 - - - HIST1H3G 0 genome.wustl.edu 37 6 26271388 26271388 + Silent SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 6 26271388 26271388 G A SNP HIST1H3G ENST00000305910 human ensembl 69_37n -1 known silent c.225 p.I75 1.000 pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3 pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3 - no_errors HIST1H3G HGNC ENSG00000256018 65 0 0.00 59 26 30.59 - - - IQCG 0 genome.wustl.edu 37 3 197670853 197670853 + Silent SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 3 197670853 197670853 G A SNP IQCG ENST00000265239 human ensembl 69_37n -1 known silent c.78 p.G26 0.000 NULL pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS - no_errors IQCG HGNC ENSG00000114473 46 0 0.00 24 14 35.00 - - - KIAA0922 0 genome.wustl.edu 37 4 154556719 154556719 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 4 154556719 154556719 C T SNP KIAA0922 ENST00000409959 human ensembl 69_37n +1 known missense c.4553 p.S1518F 0.839 NULL pfam_DUF3651_TMEM131 - no_errors KIAA0922 HGNC ENSG00000121210 70 0 0.00 80 18 18.37 - - - KIF21B 0 genome.wustl.edu 37 1 200958025 200958025 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 1 200958025 200958025 C T SNP KIF21B ENST00000422435 human ensembl 69_37n -1 known missense c.3167 p.R1056Q 1.000 superfamily_Prefoldin pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom - no_errors KIF21B HGNC ENSG00000116852 37 0 0.00 35 7 16.67 - - - MLL3 0 genome.wustl.edu 37 7 151859396 151859396 + Frame_Shift_Del DEL C C - TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 7 151859396 151859396 C - DEL MLL3 ENST00000355193 human ensembl 69_37n -1 known frame_shift_del c.11266 p.A3756fs 0.001 NULL pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING - no_errors MLL3 HGNC ENSG00000055609 105 0 0.00 60 10 13.70 - - - MXRA5 0 genome.wustl.edu 37 X 3238811 3238811 + Missense_Mutation SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf X 3238811 3238811 G A SNP MXRA5 ENST00000217939 human ensembl 69_37n -1 known missense c.4915 p.P1639S 0.006 NULL pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors MXRA5 HGNC ENSG00000101825 144 0 0.00 135 68 33.50 - - - MYB 0 genome.wustl.edu 37 6 135511376 135511377 + Frame_Shift_Ins INS - - CA TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 6 135511376 135511377 - CA INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.418_419 p.E141fs 1.000:1.000 superfamily_Homeodomain-like,pfscan_Myb-like_dom pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 144 0 0.00 97 37 27.61 - - - OSBPL10 0 genome.wustl.edu 37 3 31725367 31725367 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 3 31725367 31725367 C T SNP OSBPL10 ENST00000429492 human ensembl 69_37n -1 putative missense c.791 p.R264K 0.991 pfam_Oxysterol-bd pfam_Oxysterol-bd - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region OSBPL10 HGNC ENSG00000144645 161 0 0.00 132 16 10.74 - - - PIWIL3 0 genome.wustl.edu 37 22 25158460 25158460 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 22 25158460 25158460 C T SNP PIWIL3 ENST00000332271 human ensembl 69_37n -1 known missense c.7 p.G3S 0.736 NULL pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi - no_errors PIWIL3 HGNC ENSG00000184571 110 0 0.00 83 15 15.31 - - - RABL6 0 genome.wustl.edu 37 9 139718076 139718076 + Frame_Shift_Del DEL A A - TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 9 139718076 139718076 A - DEL RABL6 ENST00000371663 human ensembl 69_37n +1 known frame_shift_del c.230 p.E77fs 1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase - no_errors RABL6 HGNC ENSG00000196642 32 0 0.00 27 30 52.63 - - - RABL6 0 genome.wustl.edu 37 9 139718080 139718081 + Frame_Shift_Ins INS - - A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 9 139718080 139718081 - A INS RABL6 ENST00000371663 human ensembl 69_37n +1 known frame_shift_ins c.234_235 p.Q78fs 1.000:1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase - no_errors RABL6 HGNC ENSG00000196642 32 0 0.00 26 29 52.73 - - - RABL6 0 genome.wustl.edu 37 9 139718081 139718082 + Frame_Shift_Ins INS - - G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 9 139718081 139718082 - G INS RABL6 ENST00000371663 human ensembl 69_37n +1 known frame_shift_ins c.235_236 p.Q79fs 1.000:1.000 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase - no_errors RABL6 HGNC ENSG00000196642 32 0 0.00 24 29 54.72 - - - RDH11 0 genome.wustl.edu 37 14 68157923 68157923 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 14 68157923 68157923 C T SNP RDH11 ENST00000381346 human ensembl 69_37n -1 known missense c.388 p.V130M 1.000 pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR - no_errors RDH11 HGNC ENSG00000072042 81 0 0.00 144 32 18.18 - - - SDK2 0 genome.wustl.edu 37 17 71394281 71394282 + Frame_Shift_Ins INS - - G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 17 71394281 71394282 - G INS SDK2 ENST00000392650 human ensembl 69_37n -1 known frame_shift_ins c.3247_3246 p.S1082fs 1.000:1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors SDK2 HGNC ENSG00000069188 44 0 0.00 32 4 11.11 - - - SFTA3 0 genome.wustl.edu 37 14 36946266 36946266 + Silent SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 14 36946266 36946266 G A SNP SFTA3 ENST00000518002 human ensembl 69_37n -1 known silent c.171 p.V57 0.002 NULL NULL - no_errors SFTA3 HGNC ENSG00000229415 187 0 0.00 84 45 34.88 - - - SHCBP1 0 genome.wustl.edu 37 16 46617506 46617506 + Missense_Mutation SNP T T G TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 16 46617506 46617506 T G SNP SHCBP1 ENST00000303383 human ensembl 69_37n -1 known missense c.1615 p.N539H 1.000 superfamily_Pectin_lyase_fold/virulence,smart_PbH1 superfamily_Pectin_lyase_fold/virulence,smart_PbH1 - no_errors SHCBP1 HGNC ENSG00000171241 192 1 0.52 46 28 37.84 - - - SNRNP40 0 genome.wustl.edu 37 1 31769548 31769548 + Silent SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 1 31769548 31769548 G A SNP SNRNP40 ENST00000446633 human ensembl 69_37n -1 known silent c.51 p.V17 0.849 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors SNRNP40 HGNC ENSG00000060688 39 0 0.00 25 13 34.21 - - - TBX3 0 genome.wustl.edu 37 12 115118782 115118782 + Missense_Mutation SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 12 115118782 115118782 G A SNP TBX3 ENST00000257566 human ensembl 69_37n -1 known missense c.559 p.H187Y 1.000 pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box - no_errors TBX3 HGNC ENSG00000135111 91 0 0.00 80 16 16.67 - - - TENC1 0 genome.wustl.edu 37 12 53454755 53454756 + Frame_Shift_Ins INS - - C TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 12 53454755 53454756 - C INS TENC1 ENST00000314276 human ensembl 69_37n +1 known frame_shift_ins c.3095_3096 p.D1035fs 0.719:0.438 NULL pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors TENC1 HGNC ENSG00000111077 16 0 0.00 15 3 16.67 - - - TMEM150A 0 genome.wustl.edu 37 2 85826426 85826426 + Missense_Mutation SNP C C T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 2 85826426 85826426 C T SNP TMEM150A ENST00000334462 human ensembl 69_37n -1 known missense c.589 p.V197I 0.966 pfam_Frag1/DRAM/Sfk1 pfam_Frag1/DRAM/Sfk1 - no_errors TMEM150A HGNC ENSG00000168890 25 0 0.00 20 4 16.67 - - - TRIM14 0 genome.wustl.edu 37 9 100862246 100862246 + Nonsense_Mutation SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 9 100862246 100862246 G A SNP TRIM14 ENST00000475147 human ensembl 69_37n -1 known nonsense c.220 p.Q74* 0.005 NULL pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box - no_errors TRIM14 HGNC ENSG00000106785 57 0 0.00 51 18 26.09 - - - VCL 0 genome.wustl.edu 37 10 75843202 75843202 + Missense_Mutation SNP G G T TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 10 75843202 75843202 G T SNP VCL ENST00000211998 human ensembl 69_37n +1 known missense c.953 p.R318L 1.000 pfam_Vinculin/catenin,superfamily_Vinculin/catenin pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin - no_errors VCL HGNC ENSG00000035403 183 1 0.54 130 64 32.99 - - - WHAMMP2 0 genome.wustl.edu 37 15 29000046 29000046 + RNA DEL A A - TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 15 29000046 29000046 A - DEL WHAMMP2 ENST00000512149 human ensembl 69_37n +1 putative rna NULL NULL 0.836 - - - no_errors WHAMMP2 HGNC ENSG00000248334 75 0 0.00 18 2 10.00 - - - ZFHX3 0 genome.wustl.edu 37 16 72830109 72830109 + Nonsense_Mutation SNP G G A TCGA-BH-A0HQ-01A-11W-A050-09 TCGA-BH-A0HQ-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f03af67f-3119-4ee4-a4b0-227d36f493ba 006ff264-ef7d-4021-a879-77080c0440cf 16 72830109 72830109 G A SNP ZFHX3 ENST00000268489 human ensembl 69_37n -1 known nonsense c.6472 p.R2158* 1.000 pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors ZFHX3 HGNC ENSG00000140836 81 0 0.00 19 37 66.07 - - -