Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AKAP8 0 genome.wustl.edu 37 19 15484018 15484019 + Frame_Shift_Ins INS - - C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 19 15484018 15484019 - C INS AKAP8 ENST00000269701 human ensembl 69_37n -1 known frame_shift_ins c.505_504 p.Q168fs 0.986:0.890 NULL pfam_AKAP95 - no_errors AKAP8 HGNC ENSG00000105127 44 0 0.00 18 4 18.18 - - - ARHGAP26 0 genome.wustl.edu 37 5 142513639 142513639 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 5 142513639 142513639 G A SNP ARHGAP26 ENST00000443674 human ensembl 69_37n +1 novel missense c.662 p.R221H 0.358 NULL pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom - pseudogene:no_stop_codon:bad_bp_length_for_coding_region ARHGAP26 HGNC ENSG00000145819 163 1 0.61 63 16 20.00 - - - ARID1A 0 genome.wustl.edu 37 1 27087880 27087880 + Nonsense_Mutation SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 1 27087880 27087880 C T SNP ARID1A ENST00000324856 human ensembl 69_37n +1 known nonsense c.2167 p.Q723* 1.000 NULL pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID1A HGNC ENSG00000117713 105 0 0.00 22 19 46.34 - - - ATP6V1B1 0 genome.wustl.edu 37 2 71191572 71191573 + Frame_Shift_Ins INS - - C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 2 71191572 71191573 - C INS ATP6V1B1 ENST00000234396 human ensembl 69_37n +1 known frame_shift_ins c.1148_1149 p.I386fs 1.000:0.999 pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_bsu pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu - no_errors ATP6V1B1 HGNC ENSG00000116039 105 0 0.00 38 5 11.63 - - - CAPRIN1 0 genome.wustl.edu 37 11 34093289 34093289 + Missense_Mutation SNP A A G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 11 34093289 34093289 A G SNP CAPRIN1 ENST00000341394 human ensembl 69_37n +1 known missense c.233 p.Y78C 1.000 NULL pfam_Caprin-1_C - no_errors CAPRIN1 HGNC ENSG00000135387 225 0 0.00 142 138 49.11 - - - CCDC3 0 genome.wustl.edu 37 10 12940472 12940472 + Missense_Mutation SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 10 12940472 12940472 C T SNP CCDC3 ENST00000378825 human ensembl 69_37n -1 known missense c.757 p.A253T 0.003 NULL NULL - no_errors CCDC3 HGNC ENSG00000151468 30 0 0.00 2 5 71.43 - - - CEP55 0 genome.wustl.edu 37 10 95287850 95287851 + Frame_Shift_Ins INS - - C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 10 95287850 95287851 - C INS CEP55 ENST00000371485 human ensembl 69_37n +1 known frame_shift_ins c.1335_1336 p.Q445fs 0.000:0.969 NULL pfam_EABR - no_errors CEP55 HGNC ENSG00000138180 257 0 0.00 117 45 27.78 - - - CHKB 0 genome.wustl.edu 37 22 51018484 51018484 + Splice_Site SNP A A G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 22 51018484 51018484 A G SNP CHKB ENST00000471515 human ensembl 69_37n -1 known splice_site c.NULL NULL 1.000 - - - no_errors CHKB HGNC ENSG00000100288 49 0 0.00 13 13 50.00 - - - CNOT8 0 genome.wustl.edu 37 5 154254920 154254920 + Missense_Mutation SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 5 154254920 154254920 C T SNP CNOT8 ENST00000285896 human ensembl 69_37n +1 known missense c.800 p.A267V 1.000 superfamily_RNaseH-like_dom pfam_RNase_CAF1,superfamily_RNaseH-like_dom - no_errors CNOT8 HGNC ENSG00000155508 397 0 0.00 112 107 48.20 - - - CNTN4 0 genome.wustl.edu 37 3 2787338 2787338 + Silent SNP G G C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 3 2787338 2787338 G C SNP CNTN4 ENST00000397461 human ensembl 69_37n +1 known silent c.315 p.S105 0.004 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors CNTN4 HGNC ENSG00000144619 461 0 0.00 82 60 42.25 - - - CRTC2 0 genome.wustl.edu 37 1 153925831 153925831 + Missense_Mutation SNP G G C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 1 153925831 153925831 G C SNP CRTC2 ENST00000368633 human ensembl 69_37n -1 known missense c.518 p.S173C 1.000 NULL NULL - no_errors CRTC2 HGNC ENSG00000160741 304 1 0.33 52 52 50.00 - - - DNAJC22 0 genome.wustl.edu 37 12 49742746 49742746 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 12 49742746 49742746 G A SNP DNAJC22 ENST00000395069 human ensembl 69_37n +1 known missense c.91 p.A31T 1.000 pfam_TM2 pfam_DnaJ_N,pfam_TM2,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ - no_errors DNAJC22 HGNC ENSG00000178401 92 0 0.00 28 5 15.15 - - - EOMES 0 genome.wustl.edu 37 3 27761733 27761733 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 3 27761733 27761733 G A SNP EOMES ENST00000449599 human ensembl 69_37n -1 known missense c.965 p.A322V 0.999 pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box - no_errors EOMES HGNC ENSG00000163508 209 0 0.00 53 47 46.53 - - - FAM179B 0 genome.wustl.edu 37 14 45431981 45431982 + Frame_Shift_Ins INS - - G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 14 45431981 45431982 - G INS FAM179B ENST00000361577 human ensembl 69_37n +1 known frame_shift_ins c.357_358 p.L119fs 0.994:0.995 NULL superfamily_ARM-type_fold - no_errors FAM179B HGNC ENSG00000198718 55 0 0.00 13 2 13.33 - - - FAM63A 0 genome.wustl.edu 37 1 150973769 150973769 + Missense_Mutation SNP T T A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 1 150973769 150973769 T A SNP FAM63A ENST00000361738 human ensembl 69_37n -1 known missense c.677 p.K226M 1.000 pfam_DUF544 pfam_DUF544 - no_errors FAM63A HGNC ENSG00000143409 128 0 0.00 38 21 35.59 - - - FGF23 0 genome.wustl.edu 37 12 4479710 4479710 + Silent SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 12 4479710 4479710 C T SNP FGF23 ENST00000237837 human ensembl 69_37n -1 known silent c.555 p.S185 0.000 NULL pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF - no_errors FGF23 HGNC ENSG00000118972 88 0 0.00 17 12 41.38 - - - FLJ43860 0 genome.wustl.edu 37 8 142458155 142458155 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 8 142458155 142458155 G A SNP FLJ43860 ENST00000430863 human ensembl 69_37n -1 known missense c.2671 p.R891W 0.003 NULL NULL - pseudogene AC100803.1 Clone_based_vega_gene ENSG00000226807 47 0 0.00 8 21 72.41 - - - FOLH1 0 genome.wustl.edu 37 11 49192781 49192781 + Missense_Mutation SNP T T A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 11 49192781 49192781 T A SNP FOLH1 ENST00000256999 human ensembl 69_37n -1 known missense c.1274 p.E425V 1.000 pfam_Peptidase_M28 pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom - no_errors FOLH1 HGNC ENSG00000086205 193 0 0.00 95 51 34.93 - - - GABBR2 0 genome.wustl.edu 37 9 101052989 101052989 + Silent SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 9 101052989 101052989 G A SNP GABBR2 ENST00000259455 human ensembl 69_37n -1 known silent c.2703 p.H901 1.000 NULL pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C - no_errors GABBR2 HGNC ENSG00000136928 181 0 0.00 68 11 13.75 - - - GDF6 0 genome.wustl.edu 37 8 97172770 97172770 + Missense_Mutation SNP T T A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 8 97172770 97172770 T A SNP GDF6 ENST00000287020 human ensembl 69_37n -1 known missense c.151 p.M51L 1.000 NULL pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C - no_errors GDF6 HGNC ENSG00000156466 56 0 0.00 20 4 16.67 - - - GRID1 0 genome.wustl.edu 37 10 87406859 87406860 + RNA INS - - A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 10 87406859 87406860 - A INS GRID1 ENST00000474115 human ensembl 69_37n -1 known rna NULL NULL 0.000:0.000 - - - no_errors GRID1 HGNC ENSG00000182771 45 0 0.00 6 4 40.00 - - - KHK 0 genome.wustl.edu 37 2 27320451 27320451 + Frame_Shift_Del DEL C C - TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 2 27320451 27320451 C - DEL KHK ENST00000260598 human ensembl 69_37n +1 known frame_shift_del c.498 p.R167fs 1.000 pfam_PfkB pfam_PfkB - no_errors KHK HGNC ENSG00000138030 64 0 0.00 16 2 11.11 - - - KRT81 0 genome.wustl.edu 37 12 52681780 52681780 + Nonsense_Mutation SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 12 52681780 52681780 C T SNP KRT81 ENST00000327741 human ensembl 69_37n -1 known nonsense c.888 p.W296* 1.000 pfam_F,superfamily_Prefoldin pfam_F,superfamily_Prefoldin,prints_Keratin_II - no_errors KRT81 HGNC ENSG00000205426 175 0 0.00 72 21 22.58 - - - LRP3 0 genome.wustl.edu 37 19 33695733 33695733 + Frame_Shift_Del DEL G G - TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 19 33695733 33695733 G - DEL LRP3 ENST00000253193 human ensembl 69_37n +1 known frame_shift_del c.450 p.G151fs 1.000 pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt - no_errors LRP3 HGNC ENSG00000130881 62 0 0.00 15 2 11.11 - - - MECOM 0 genome.wustl.edu 37 3 168813030 168813030 + Silent SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 3 168813030 168813030 G A SNP MECOM ENST00000494292 human ensembl 69_37n -1 known silent c.2826 p.C942 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2 - no_errors MECOM HGNC ENSG00000085276 142 0 0.00 106 18 14.52 - - - OR10K2 0 genome.wustl.edu 37 1 158390579 158390579 + Silent SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 1 158390579 158390579 C T SNP OR10K2 ENST00000314902 human ensembl 69_37n -1 known silent c.78 p.L26 0.212 prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR10K2 HGNC ENSG00000180708 267 0 0.00 62 95 60.51 - - - PCDHA6 0 genome.wustl.edu 37 5 140209681 140209681 + Silent SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 5 140209681 140209681 C T SNP PCDHA6 ENST00000529310 human ensembl 69_37n +1 known silent c.2005 p.L669 0.795 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHA6 HGNC ENSG00000081842 51 0 0.00 8 12 60.00 - - - PORCN 0 genome.wustl.edu 37 X 48378800 48378800 + Missense_Mutation SNP A A T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 X 48378800 48378800 A T SNP PORCN ENST00000326194 human ensembl 69_37n +1 known missense c.1322 p.E441V 1.000 NULL pfam_MBOAT_fam - no_errors PORCN HGNC ENSG00000102312 195 0 0.00 72 60 45.45 - - - PTPRD 0 genome.wustl.edu 37 9 8486284 8486284 + Missense_Mutation SNP G G T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 9 8486284 8486284 G T SNP PTPRD ENST00000356435 human ensembl 69_37n -1 known missense c.2533 p.P845T 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt - no_errors PTPRD HGNC ENSG00000153707 87 0 0.00 21 25 54.35 - - - RAD51 0 genome.wustl.edu 37 15 41021711 41021711 + Missense_Mutation SNP T T G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 15 41021711 41021711 T G SNP RAD51 ENST00000382643 human ensembl 69_37n +1 known missense c.656 p.L219R 1.000 pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DNA_recomb/repair_Rad51 pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51 - no_errors RAD51 HGNC ENSG00000051180 65 0 0.00 19 23 54.76 - - - RPS4X 0 genome.wustl.edu 37 X 71493102 71493102 + Missense_Mutation SNP T T G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 X 71493102 71493102 T G SNP RPS4X ENST00000316084 human ensembl 69_37n -1 known missense c.670 p.N224H 1.000 pirsf_Ribosomal_S4e pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd - no_errors RPS4X HGNC ENSG00000198034 239 0 0.00 106 98 48.04 - - - SLC16A13 0 genome.wustl.edu 37 17 6940081 6940081 + Missense_Mutation SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 17 6940081 6940081 C T SNP SLC16A13 ENST00000308027 human ensembl 69_37n +1 known missense c.235 p.P79S 0.996 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC16A13 HGNC ENSG00000174327 82 0 0.00 32 6 15.79 - - - SLC17A7 0 genome.wustl.edu 37 19 49933805 49933806 + Frame_Shift_Ins INS - - G TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 19 49933805 49933806 - G INS SLC17A7 ENST00000221485 human ensembl 69_37n -1 known frame_shift_ins c.1654_1653 p.R551fs 0.558:0.428 NULL pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom - no_errors SLC17A7 HGNC ENSG00000104888 50 0 0.00 20 3 13.04 - - - SLC9A3 0 genome.wustl.edu 37 5 475689 475689 + Frame_Shift_Del DEL G G - TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 5 475689 475689 G - DEL SLC9A3 ENST00000264938 human ensembl 69_37n -1 known frame_shift_del c.2238 p.D747fs 0.015 NULL pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_bac,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger - no_errors SLC9A3 HGNC ENSG00000066230 58 0 0.00 17 2 10.53 - - - TACC1 0 genome.wustl.edu 37 8 38696043 38696043 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 8 38696043 38696043 G A SNP TACC1 ENST00000379931 human ensembl 69_37n +1 known missense c.1931 p.R644Q 0.999 pfam_TACC pfam_TACC - no_errors TACC1 HGNC ENSG00000147526 278 1 0.36 485 95 16.38 - - - TTC9C 0 genome.wustl.edu 37 11 62505789 62505789 + Missense_Mutation SNP A A T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 11 62505789 62505789 A T SNP TTC9C ENST00000316461 human ensembl 69_37n +1 known missense c.451 p.T151S 1.000 NULL pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors TTC9C HGNC ENSG00000162222 135 0 0.00 85 53 38.41 - - - WBSCR28 0 genome.wustl.edu 37 7 73279580 73279580 + Silent SNP C C T TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 7 73279580 73279580 C T SNP WBSCR28 ENST00000320531 human ensembl 69_37n +1 known silent c.330 p.G110 0.007 NULL NULL - no_errors WBSCR28 HGNC ENSG00000175877 79 0 0.00 25 7 21.88 - - - WNT6 0 genome.wustl.edu 37 2 219735910 219735910 + Missense_Mutation SNP G G A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 2 219735910 219735910 G A SNP WNT6 ENST00000233948 human ensembl 69_37n +1 known missense c.242 p.R81H 1.000 pfam_Wnt,smart_Wnt pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6 - no_errors WNT6 HGNC ENSG00000115596 39 0 0.00 10 7 38.89 - - - ZFP36L2 0 genome.wustl.edu 37 2 43452622 43452623 + Frame_Shift_Ins INS - - C TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 2 43452622 43452623 - C INS ZFP36L2 ENST00000282388 human ensembl 69_37n -1 known frame_shift_ins c.321_320 p.G108fs 0.998:1.000 pfam_Tis11B_N pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZFP36L2 HGNC ENSG00000152518 49 0 0.00 1 9 90.00 - - - ZNF135 0 genome.wustl.edu 37 19 58578672 58578673 + Frame_Shift_Ins INS - - A TCGA-BH-A0HW-01A-11W-A050-09 TCGA-BH-A0HW-10A-01W-A055-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 706ec3be-bd65-4f42-b5cc-603f7f62c91a 76e4b953-efcc-401c-916a-e3c7ecbe8de6 19 58578672 58578673 - A INS ZNF135 ENST00000401053 human ensembl 69_37n +1 known frame_shift_ins c.892_893 p.C299fs 0.001:0.007 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF135 HGNC ENSG00000176293 112 0 0.00 55 49 47.12 - - -