Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All C9orf66 0 genome.wustl.edu 37 9 214549 214550 + Frame_Shift_Ins INS - - G TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 9 214549 214550 - G INS C9orf66 ENST00000382387 human ensembl 69_37n -1 known frame_shift_ins c.848_847 p.H283fs 0.000:0.000 NULL NULL - no_errors C9orf66 HGNC ENSG00000183784 18 0 0.00 28 8 22.22 - - - CSMD3 0 genome.wustl.edu 37 8 113299452 113299452 + Missense_Mutation SNP C C T TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 8 113299452 113299452 C T SNP CSMD3 ENST00000297405 human ensembl 69_37n -1 known missense c.9172 p.D3058N 1.000 pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP - no_errors CSMD3 HGNC ENSG00000164796 36 0 0.00 72 27 27.27 - - - DIAPH3 0 genome.wustl.edu 37 13 60435515 60435515 + RNA SNP G G A TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 13 60435515 60435515 G A SNP DIAPH3 ENST00000498416 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors DIAPH3 HGNC ENSG00000139734 58 0 0.00 108 30 21.74 - - - ERBB2 0 genome.wustl.edu 37 17 37880261 37880261 + Missense_Mutation SNP G G T TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 17 37880261 37880261 G T SNP ERBB2 ENST00000269571 human ensembl 69_37n +1 known missense c.2305 p.D769Y 1.000 pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors ERBB2 HGNC ENSG00000141736 37 0 0.00 92 15 14.02 - - - GON4L 0 genome.wustl.edu 37 1 155753682 155753682 + Splice_Site SNP T T G TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 1 155753682 155753682 T G SNP GON4L ENST00000477831 human ensembl 69_37n -1 known splice_site c.NULL NULL 0.000 - - - no_errors GON4L HGNC ENSG00000116580 16 0 0.00 11 25 69.44 - - - MST1 0 genome.wustl.edu 37 3 49723916 49723916 + Splice_Site SNP T T G TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 3 49723916 49723916 T G SNP MST1 ENST00000449682 human ensembl 69_37n -1 known splice_site c.848-2 e8-2 0.527 - - - no_errors MST1 HGNC ENSG00000173531 32 0 0.00 28 5 15.15 - - - MUC1 0 genome.wustl.edu 37 1 155160715 155160715 + Missense_Mutation SNP T T C TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 1 155160715 155160715 T C SNP MUC1 ENST00000425082 human ensembl 69_37n -1 known missense c.1070 p.N357S 0.793 pfam_SEA,smart_SEA,pfscan_SEA pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC1 HGNC ENSG00000185499 32 0 0.00 95 21 17.95 - - - MUC17 0 genome.wustl.edu 37 7 100685739 100685739 + Missense_Mutation SNP G G A TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 7 100685739 100685739 G A SNP MUC17 ENST00000306151 human ensembl 69_37n +1 known missense c.11042 p.G3681D 0.001 NULL pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA - no_errors MUC17 HGNC ENSG00000169876 33 0 0.00 95 26 21.49 - - - PIK3CA 0 genome.wustl.edu 37 3 178916944 178916944 + Missense_Mutation SNP A A G TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 3 178916944 178916944 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.331 p.K111E 1.000 NULL pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 37 0 0.00 42 20 32.26 - - - RHAG 0 genome.wustl.edu 37 6 49582475 49582475 + Silent SNP G G A TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 6 49582475 49582475 G A SNP RHAG ENST00000371175 human ensembl 69_37n -1 known silent c.732 p.Y244 1.000 pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD - no_errors RHAG HGNC ENSG00000112077 54 0 0.00 108 17 13.60 - - - SPHKAP 0 genome.wustl.edu 37 2 228855865 228855865 + Missense_Mutation SNP G G T TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 2 228855865 228855865 G T SNP SPHKAP ENST00000392056 human ensembl 69_37n -1 known missense c.4810 p.P1604T 0.003 pfam_AKAP_110_C pfam_AKAP_110_C - no_errors SPHKAP HGNC ENSG00000153820 48 0 0.00 80 20 20.00 - - - TLN1 0 genome.wustl.edu 37 9 35706350 35706350 + Missense_Mutation SNP G G A TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 9 35706350 35706350 G A SNP TLN1 ENST00000314888 human ensembl 69_37n -1 known missense c.5204 p.A1735V 1.000 superfamily_Vinculin/catenin pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ - no_errors TLN1 HGNC ENSG00000137076 19 0 0.00 48 11 18.64 - - - TP53 0 genome.wustl.edu 37 17 7577541 7577541 + Missense_Mutation SNP T T A TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b 17 7577541 7577541 T A SNP TP53 ENST00000269305 human ensembl 69_37n -1 known missense c.740 p.N247I 1.000 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 41 0 0.00 53 12 18.46 - - - ZBTB33 0 genome.wustl.edu 37 X 119389142 119389142 + Missense_Mutation SNP A A C TCGA-BH-A1FE-01A-11D-A13L-09 TCGA-BH-A1FE-11B-14D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e e4e4b299-d680-4777-bd54-f0fdc60aae0b X 119389142 119389142 A C SNP ZBTB33 ENST00000326624 human ensembl 69_37n +1 known missense c.1872 p.E624D 0.998 NULL pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB33 HGNC ENSG00000177485 35 0 0.00 76 28 26.92 - - -