Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AMT 0 genome.wustl.edu 37 3 49455277 49455277 + Missense_Mutation SNP A A T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 3 49455277 49455277 A T SNP AMT ENST00000273588 human ensembl 69_37n -1 known missense c.1007 p.I336N 1.000 pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT pfam_GCV_T_N,pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT - no_errors AMT HGNC ENSG00000145020 37 0 0.00 35 19 35.19 - - - ANKHD1 0 genome.wustl.edu 37 5 139862242 139862243 + Frame_Shift_Ins INS - - A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 5 139862242 139862243 - A INS ANKHD1 ENST00000297183 human ensembl 69_37n +1 known frame_shift_ins c.1860_1861 p.I620fs 0.993:1.000 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt - no_errors ANKHD1 HGNC ENSG00000131503 326 0 0.00 272 104 27.66 - - - ANKRD34A 0 genome.wustl.edu 37 1 145473655 145473655 + Silent SNP C C T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 1 145473655 145473655 C T SNP ANKRD34A ENST00000323397 human ensembl 69_37n +1 known silent c.327 p.H109 1.000 superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD34A HGNC ENSG00000181039 12 0 0.00 18 17 48.57 - - - CBR1 0 genome.wustl.edu 37 21 37445117 37445117 + Missense_Mutation SNP G G T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 21 37445117 37445117 G T SNP CBR1 ENST00000290349 human ensembl 69_37n +1 known missense c.771 p.L257F 0.992 NULL pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR - no_errors CBR1 HGNC ENSG00000159228 55 0 0.00 47 19 28.79 - - - HOXA1 0 genome.wustl.edu 37 7 27134229 27134229 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 7 27134229 27134229 G A SNP HOXA1 ENST00000343060 human ensembl 69_37n -1 known missense c.838 p.R280C 1.000 pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa - no_errors HOXA1 HGNC ENSG00000105991 150 0 0.00 172 71 29.22 - - - KCNU1 0 genome.wustl.edu 37 8 36662741 36662741 + Missense_Mutation SNP G G C TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 8 36662741 36662741 G C SNP KCNU1 ENST00000399881 human ensembl 69_37n +1 known missense c.406 p.D136H 0.936 NULL pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu - no_errors KCNU1 HGNC ENSG00000215262 417 0 0.00 462 650 58.40 - - - KIAA1279 0 genome.wustl.edu 37 10 70748750 70748750 + Silent SNP T T C TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 10 70748750 70748750 T C SNP KIAA1279 ENST00000361983 human ensembl 69_37n +1 known silent c.162 p.P54 0.000 NULL pfam_KBP - no_errors KIAA1279 HGNC ENSG00000198954 35 0 0.00 24 11 31.43 - - - MORC1 0 genome.wustl.edu 37 3 108819313 108819313 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 3 108819313 108819313 G A SNP MORC1 ENST00000232603 human ensembl 69_37n -1 known missense c.265 p.R89W 0.974 superfamily_ATPase-like_ATP-bd pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW - no_errors MORC1 HGNC ENSG00000114487 316 0 0.00 311 109 25.95 - - - MUC15 0 genome.wustl.edu 37 11 26584710 26584710 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 11 26584710 26584710 G A SNP MUC15 ENST00000436318 human ensembl 69_37n -1 known missense c.878 p.T293M 0.048 NULL NULL - no_errors MUC15 HGNC ENSG00000169550 163 0 0.00 131 53 28.80 - - - PARP15 0 genome.wustl.edu 37 3 122296675 122296675 + Missense_Mutation SNP C C T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 3 122296675 122296675 C T SNP PARP15 ENST00000464300 human ensembl 69_37n +1 known missense c.161 p.S54F 0.002 NULL pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom - no_errors PARP15 HGNC ENSG00000173200 59 0 0.00 21 15 41.67 - - - PBX4 0 genome.wustl.edu 37 19 19681029 19681029 + Missense_Mutation SNP A A G TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 19 19681029 19681029 A G SNP PBX4 ENST00000251203 human ensembl 69_37n -1 known missense c.521 p.I174T 0.990 pfam_PBX pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain - no_errors PBX4 HGNC ENSG00000105717 63 0 0.00 88 25 21.93 - - - PDXDC1 0 genome.wustl.edu 37 16 15128373 15128373 + Frame_Shift_Del DEL G G - TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 16 15128373 15128373 G - DEL PDXDC1 ENST00000396410 human ensembl 69_37n +1 known frame_shift_del c.1965 p.A656fs 0.823 NULL pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom - no_errors PDXDC1 HGNC ENSG00000179889 244 0 0.00 247 89 26.18 - - - PNLIP 0 genome.wustl.edu 37 10 118313248 118313248 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 10 118313248 118313248 G A SNP PNLIP ENST00000369221 human ensembl 69_37n +1 known missense c.469 p.G157S 0.002 pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc - no_errors PNLIP HGNC ENSG00000175535 107 0 0.00 105 32 23.36 - - - RAG2 0 genome.wustl.edu 37 11 36615502 36615502 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 11 36615502 36615502 G A SNP RAG2 ENST00000311485 human ensembl 69_37n -1 known missense c.217 p.R73C 1.000 pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_Znf_FYVE_PHD - no_errors RAG2 HGNC ENSG00000175097 338 0 0.00 357 101 22.00 - - - SH3BP5L 0 genome.wustl.edu 37 1 249107351 249107351 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 1 249107351 249107351 G A SNP SH3BP5L ENST00000366472 human ensembl 69_37n -1 known missense c.548 p.A183V 1.000 pfam_SH3-bd_5 pfam_SH3-bd_5 - no_errors SH3BP5L HGNC ENSG00000175137 60 0 0.00 81 11 11.96 - - - SLC19A1 0 genome.wustl.edu 37 21 46951971 46951971 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 21 46951971 46951971 G A SNP SLC19A1 ENST00000311124 human ensembl 69_37n -1 known missense c.281 p.P94L 1.000 pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier - no_errors SLC19A1 HGNC ENSG00000173638 20 0 0.00 16 5 23.81 - - - SLC47A2 0 genome.wustl.edu 37 17 19607404 19607404 + Missense_Mutation SNP C C T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 17 19607404 19607404 C T SNP SLC47A2 ENST00000325411 human ensembl 69_37n -1 known missense c.1105 p.V369I 0.000 pfam_MATE,tigrfam_MATE pfam_MATE,tigrfam_MATE - no_errors SLC47A2 HGNC ENSG00000180638 28 0 0.00 33 20 37.74 - - - STRN3 0 genome.wustl.edu 37 14 31388247 31388247 + Missense_Mutation SNP G G C TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 14 31388247 31388247 G C SNP STRN3 ENST00000357479 human ensembl 69_37n -1 known missense c.1165 p.P389A 1.000 NULL pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors STRN3 HGNC ENSG00000196792 304 0 0.00 143 122 46.04 - - - TYW3 0 genome.wustl.edu 37 1 75202299 75202299 + Missense_Mutation SNP A A T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 1 75202299 75202299 A T SNP TYW3 ENST00000370867 human ensembl 69_37n +1 known missense c.248 p.D83V 1.000 pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising - no_errors TYW3 HGNC ENSG00000162623 136 0 0.00 87 22 20.18 - - - UEVLD 0 genome.wustl.edu 37 11 18568489 18568489 + Missense_Mutation SNP G G C TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 11 18568489 18568489 G C SNP UEVLD ENST00000396197 human ensembl 69_37n -1 known missense c.824 p.A275G 0.965 pfam_Lactate/malate_DH_N pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH - no_errors UEVLD HGNC ENSG00000151116 207 0 0.00 181 83 31.44 - - - WDR6 0 genome.wustl.edu 37 3 49050454 49050454 + Missense_Mutation SNP G G A TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 3 49050454 49050454 G A SNP WDR6 ENST00000395474 human ensembl 69_37n +1 known missense c.1577 p.C526Y 0.999 superfamily_Quino_amine_DH_bsu,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR6 HGNC ENSG00000178252 82 0 0.00 83 36 30.25 - - - WDR6 0 genome.wustl.edu 37 3 49050455 49050455 + Silent SNP C C T TCGA-E2-A15F-01A-11D-A10Y-09 TCGA-E2-A15F-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33edf937-b09f-49ec-8f4c-e05dee7ece1f 282ccab4-f257-4ee5-832b-6b690291e6bb 3 49050455 49050455 C T SNP WDR6 ENST00000395474 human ensembl 69_37n +1 known silent c.1578 p.C526 0.858 superfamily_Quino_amine_DH_bsu,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR6 HGNC ENSG00000178252 82 0 0.00 84 35 29.41 - - -