Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ATP2B1 0 genome.wustl.edu 37 12 90018057 90018057 + Missense_Mutation SNP A A C TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 12 90018057 90018057 A C SNP ATP2B1 ENST00000261173 human ensembl 69_37n -1 known missense c.1247 p.F416C 1.000 pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP2B1 HGNC ENSG00000070961 122 0 0.00 89 14 13.59 - - - CDH11 0 genome.wustl.edu 37 16 65016151 65016151 + Silent SNP G G A TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 16 65016151 65016151 G A SNP CDH11 ENST00000268603 human ensembl 69_37n -1 known silent c.1053 p.N351 0.962 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH11 HGNC ENSG00000140937 112 0 0.00 108 16 12.90 - - - CHI3L1 0 genome.wustl.edu 37 1 203154335 203154335 + Silent SNP G G C TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 1 203154335 203154335 G C SNP CHI3L1 ENST00000255409 human ensembl 69_37n -1 known silent c.234 p.G78 0.016 pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II - no_errors CHI3L1 HGNC ENSG00000133048 82 0 0.00 89 37 29.37 - - - FAT3 0 genome.wustl.edu 37 11 92533820 92533820 + Missense_Mutation SNP C C G TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 11 92533820 92533820 C G SNP FAT3 ENST00000298047 human ensembl 69_37n +1 known missense c.7641 p.D2547E 0.576 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin - no_errors FAT3 HGNC ENSG00000165323 109 0 0.00 96 35 26.72 - - - HLF 0 genome.wustl.edu 37 17 53345424 53345424 + Missense_Mutation SNP G G A TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 17 53345424 53345424 G A SNP HLF ENST00000226067 human ensembl 69_37n +1 known missense c.428 p.C143Y 1.000 NULL pfam_bZIP_2,smart_bZIP,pfscan_bZIP - no_errors HLF HGNC ENSG00000108924 58 0 0.00 33 52 61.18 - - - MUC20 0 genome.wustl.edu 37 3 195345561 195345561 + Missense_Mutation SNP A A G TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 3 195345561 195345561 A G SNP MUC20 ENST00000381954 human ensembl 69_37n +1 known missense c.34 p.T12A 0.007 NULL NULL - no_errors MUC20 HGNC ENSG00000176945 8 0 0.00 1 4 80.00 - - - NEDD4 0 genome.wustl.edu 37 15 56141078 56141078 + Missense_Mutation SNP G G A TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 15 56141078 56141078 G A SNP NEDD4 ENST00000508342 human ensembl 69_37n -1 known missense c.2611 p.P871S 1.000 pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP - no_errors NEDD4 HGNC ENSG00000069869 327 0 0.00 246 53 17.67 - - - PHIP 0 genome.wustl.edu 37 6 79665349 79665351 + In_Frame_Del DEL TTC TTC - TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 TTC TTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 6 79665349 79665351 TTC - DEL PHIP ENST00000275034 human ensembl 69_37n -1 known in_frame_del c.3833_3831 p.K1278in_frame_del 1.000:1.000:1.000 NULL pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain - no_errors PHIP HGNC ENSG00000146247 171 0 0.00 75 11 12.64 - - - PNLIP 0 genome.wustl.edu 37 10 118318677 118318677 + Silent SNP C C T TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 10 118318677 118318677 C T SNP PNLIP ENST00000369221 human ensembl 69_37n +1 known silent c.942 p.F314 1.000 pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc - no_errors PNLIP HGNC ENSG00000175535 230 0 0.00 131 29 18.12 - - - PTPN13 0 genome.wustl.edu 37 4 87728895 87728895 + Missense_Mutation SNP C C G TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 4 87728895 87728895 C G SNP PTPN13 ENST00000436978 human ensembl 69_37n +1 known missense c.6943 p.Q2315E 1.000 pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt - no_errors PTPN13 HGNC ENSG00000163629 147 0 0.00 120 15 11.11 - - - TRIM74 0 genome.wustl.edu 37 7 72436307 72436307 + Missense_Mutation SNP C C T TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 7 72436307 72436307 C T SNP TRIM74 ENST00000285805 human ensembl 69_37n -1 known missense c.382 p.V128I 1.000 NULL pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM74 HGNC ENSG00000155428 11 0 0.00 9 4 30.77 - - - TRIP12 0 genome.wustl.edu 37 2 230643194 230643194 + Silent SNP G G A TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 2 230643194 230643194 G A SNP TRIP12 ENST00000283943 human ensembl 69_37n -1 known silent c.5094 p.R1698 0.997 pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom - no_errors TRIP12 HGNC ENSG00000153827 220 0 0.00 176 30 14.56 - - - UGGT2 0 genome.wustl.edu 37 13 96555315 96555315 + Splice_Site SNP C C T TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef 13 96555315 96555315 C T SNP UGGT2 ENST00000376747 human ensembl 69_37n -1 known splice_site c.2296-1 e21-1 1.000 - - - no_errors UGGT2 HGNC ENSG00000102595 87 0 0.00 57 19 24.68 - - - ZCCHC12 0 genome.wustl.edu 37 X 117959237 117959237 + Missense_Mutation SNP C C G TCGA-E2-A1B1-01A-21D-A12Q-09 TCGA-E2-A1B1-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a6e77a14-e5e5-452e-a46f-5629ee8228e3 6aec902b-6a2e-4cfa-b294-785057c147ef X 117959237 117959237 C G SNP ZCCHC12 ENST00000310164 human ensembl 69_37n +1 known missense c.30 p.N10K 0.081 NULL superfamily_Znf_CCHC - no_errors ZCCHC12 HGNC ENSG00000174460 84 0 0.00 56 10 15.15 - - -