Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANKRD18A 0 genome.wustl.edu 37 9 38595563 38595563 + Missense_Mutation SNP T T C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 9 38595563 38595563 T C SNP ANKRD18A ENST00000399703 human ensembl 69_37n -1 known missense c.1774 p.R592G 0.580 NULL pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors ANKRD18A HGNC ENSG00000180071 37 0 0.00 48 11 18.64 - - - ARL6IP4 0 genome.wustl.edu 37 12 123466575 123466575 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 12 123466575 123466575 C G SNP ARL6IP4 ENST00000315580 human ensembl 69_37n +1 known missense c.910 p.Q304E 1.000 pfam_Nucl_RNA-splicing_assoc_SR-25 pfam_Nucl_RNA-splicing_assoc_SR-25 - no_errors ARL6IP4 HGNC ENSG00000182196 15 0 0.00 16 5 23.81 - - - C10orf91 0 genome.wustl.edu 37 10 134261527 134261527 + Missense_Mutation SNP G G A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 10 134261527 134261527 G A SNP C10orf91 ENST00000321248 human ensembl 69_37n +1 known missense c.400 p.V134I 0.004 NULL NULL - no_errors C10orf91 HGNC ENSG00000180066 19 0 0.00 17 11 39.29 - - - CNKSR2 0 genome.wustl.edu 37 X 21666975 21666975 + Missense_Mutation SNP G G C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef X 21666975 21666975 G C SNP CNKSR2 ENST00000379510 human ensembl 69_37n +1 known missense c.2719 p.D907H 1.000 NULL pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM - no_errors CNKSR2 HGNC ENSG00000149970 24 0 0.00 13 7 35.00 - - - DLGAP5 0 genome.wustl.edu 37 14 55621420 55621420 + Missense_Mutation SNP T T C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 14 55621420 55621420 T C SNP DLGAP5 ENST00000247191 human ensembl 69_37n -1 known missense c.1978 p.T660A 0.000 NULL pfam_GKAP - no_errors DLGAP5 HGNC ENSG00000126787 126 1 0.79 44 14 24.14 - - - DNAI1 0 genome.wustl.edu 37 9 34500839 34500839 + Splice_Site SNP T T G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 9 34500839 34500839 T G SNP DNAI1 ENST00000242317 human ensembl 69_37n +1 known splice_site c.1019+2 e11+2 1.000 - - - no_errors DNAI1 HGNC ENSG00000122735 26 0 0.00 26 14 35.00 - - - FAM208A 0 genome.wustl.edu 37 3 56675495 56675495 + Missense_Mutation SNP T T C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 3 56675495 56675495 T C SNP FAM208A ENST00000355628 human ensembl 69_37n -1 known missense c.2501 p.E834G 1.000 NULL pfam_DUF3715 - no_errors FAM208A HGNC ENSG00000163946 70 0 0.00 22 10 31.25 - - - HTR5A 0 genome.wustl.edu 37 7 154863345 154863345 + Missense_Mutation SNP G G T TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 7 154863345 154863345 G T SNP HTR5A ENST00000287907 human ensembl 69_37n +1 known missense c.736 p.V246L 0.458 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_5HT5A_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt - no_errors HTR5A HGNC ENSG00000157219 23 0 0.00 18 4 18.18 - - - LRRC14B 0 genome.wustl.edu 37 5 195276 195276 + Silent SNP C C T TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 5 195276 195276 C T SNP LRRC14B ENST00000328278 human ensembl 69_37n +1 novel silent c.1353 p.Y451 0.001 NULL NULL - no_errors LRRC14B HGNC ENSG00000185028 22 0 0.00 23 12 34.29 - - - LRRFIP1 0 genome.wustl.edu 37 2 238643948 238643948 + Missense_Mutation SNP G G A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 2 238643948 238643948 G A SNP LRRFIP1 ENST00000308482 human ensembl 69_37n +1 putative missense c.527 p.R176Q 0.189 NULL pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin - no_errors LRRFIP1 HGNC ENSG00000124831 24 0 0.00 25 9 26.47 - - - METTL10 0 genome.wustl.edu 37 10 126453973 126453973 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 10 126453973 126453973 C G SNP METTL10 ENST00000368836 human ensembl 69_37n -1 known missense c.604 p.E202Q 0.963 NULL pfam_Methyltransf_11,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_(Gua-N-7)_MeTrfase - no_errors METTL10 HGNC ENSG00000203791 58 0 0.00 45 6 11.76 - - - MGAT5B 0 genome.wustl.edu 37 17 74902194 74902194 + Nonsense_Mutation SNP G G A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 17 74902194 74902194 G A SNP MGAT5B ENST00000428789 human ensembl 69_37n +1 known nonsense c.983 p.W328* 1.000 NULL superfamily_PyrdxlP-dep_Trfase_major_dom - no_errors MGAT5B HGNC ENSG00000167889 26 0 0.00 21 11 34.38 - - - MMRN2 0 genome.wustl.edu 37 10 88704043 88704043 + Missense_Mutation SNP T T A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 10 88704043 88704043 T A SNP MMRN2 ENST00000372027 human ensembl 69_37n -1 known missense c.631 p.M211L 0.000 NULL pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain - no_errors MMRN2 HGNC ENSG00000173269 33 0 0.00 13 15 53.57 - - - PLOD2 0 genome.wustl.edu 37 3 145809641 145809641 + Silent SNP C C T TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 3 145809641 145809641 C T SNP PLOD2 ENST00000282903 human ensembl 69_37n -1 known silent c.825 p.Q275 1.000 NULL pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph - no_errors PLOD2 HGNC ENSG00000152952 40 0 0.00 45 7 13.46 - - - RYR1 0 genome.wustl.edu 37 19 38959725 38959725 + Silent SNP C C A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 19 38959725 38959725 C A SNP RYR1 ENST00000359596 human ensembl 69_37n +1 known silent c.3501 p.V1167 1.000 pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif - no_errors RYR1 HGNC ENSG00000196218 34 0 0.00 31 6 16.22 - - - SDHAP2 0 genome.wustl.edu 37 3 195399506 195399506 + RNA SNP G G A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 3 195399506 195399506 G A SNP SDHAP2 ENST00000429897 human ensembl 69_37n +1 known rna NULL NULL 0.994 - - - no_errors SDHAP2 HGNC ENSG00000215837 12 0 0.00 17 7 29.17 - - - SENP6 0 genome.wustl.edu 37 6 76425115 76425115 + Frame_Shift_Del DEL T T - TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 6 76425115 76425115 T - DEL SENP6 ENST00000370014 human ensembl 69_37n +1 known frame_shift_del c.3144 p.F1049fs 1.000 pfam_Peptidase_C48 pfam_Peptidase_C48,pfscan_Peptidase_C48 - no_errors SENP6 HGNC ENSG00000112701 46 0 0.00 8 13 61.90 - - - SKIDA1 0 genome.wustl.edu 37 10 21805480 21805480 + Silent SNP T T C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 10 21805480 21805480 T C SNP SKIDA1 ENST00000449193 human ensembl 69_37n -1 known silent c.1272 p.E424 0.381 NULL pfam_Transform_Ski,superfamily_DNA-bd_dom_put - no_errors SKIDA1 HGNC ENSG00000180592 8 0 0.00 7 5 41.67 - - - SNX17 0 genome.wustl.edu 37 2 27598788 27598788 + Missense_Mutation SNP T T A TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 2 27598788 27598788 T A SNP SNX17 ENST00000233575 human ensembl 69_37n +1 known missense c.1054 p.Y352N 1.000 NULL pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc - no_errors SNX17 HGNC ENSG00000115234 37 0 0.00 35 6 14.63 - - - SPHKAP 0 genome.wustl.edu 37 2 228883047 228883047 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 2 228883047 228883047 C G SNP SPHKAP ENST00000392056 human ensembl 69_37n -1 known missense c.2523 p.E841D 0.000 NULL pfam_AKAP_110_C - no_errors SPHKAP HGNC ENSG00000153820 56 0 0.00 31 9 22.50 - - - SPTB 0 genome.wustl.edu 37 14 65239994 65239994 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 14 65239994 65239994 C G SNP SPTB ENST00000389722 human ensembl 69_37n -1 known missense c.5122 p.E1708Q 1.000 pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology - no_errors SPTB HGNC ENSG00000070182 36 0 0.00 46 7 13.21 - - - SUN5 0 genome.wustl.edu 37 20 31572971 31572971 + Silent SNP C C T TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 20 31572971 31572971 C T SNP SUN5 ENST00000356173 human ensembl 69_37n -1 known silent c.918 p.K306 0.031 pfam_Sad1_UNC_C,superfamily_Galactose-bd-like pfam_Sad1_UNC_C,superfamily_Galactose-bd-like - no_errors SUN5 HGNC ENSG00000167098 28 0 0.00 35 8 18.60 - - - SYNE1 0 genome.wustl.edu 37 6 152749432 152749432 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 6 152749432 152749432 C G SNP SYNE1 ENST00000265368 human ensembl 69_37n -1 known missense c.4884 p.E1628D 0.012 superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 49 0 0.00 18 4 18.18 - - - TRPC6 0 genome.wustl.edu 37 11 101454133 101454133 + Missense_Mutation SNP C C G TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 11 101454133 101454133 C G SNP TRPC6 ENST00000344327 human ensembl 69_37n -1 known missense c.102 p.M34I 1.000 NULL pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel - no_errors TRPC6 HGNC ENSG00000137672 14 0 0.00 14 4 22.22 - - - TRPM1 0 genome.wustl.edu 37 15 31294084 31294084 + Missense_Mutation SNP T T C TCGA-E2-A1LL-01A-11D-A142-09 TCGA-E2-A1LL-11A-21D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 47312f61-5ef4-4f25-9320-8fbb4758790e ed257922-f940-4fb3-9a92-fde82d130aef 15 31294084 31294084 T C SNP TRPM1 ENST00000542188 human ensembl 69_37n -1 known missense c.4870 p.M1624V 0.001 NULL pfam_Ion_trans_dom - no_errors TRPM1 HGNC ENSG00000134160 53 0 0.00 71 24 25.26 - - -