Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ATP11A 0 genome.wustl.edu 37 13 113512220 113512220 + Missense_Mutation SNP C C T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 13 113512220 113512220 C T SNP ATP11A ENST00000375630 human ensembl 69_37n +1 known missense c.2507 p.A836V 1.000 superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP11A HGNC ENSG00000068650 59 0 0.00 78 32 29.09 - - - B2M 0 genome.wustl.edu 37 15 45007801 45007801 + Missense_Mutation SNP A A T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 15 45007801 45007801 A T SNP B2M ENST00000544417 human ensembl 69_37n +1 known missense c.248 p.Y83F 0.989 pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like - no_errors B2M HGNC ENSG00000166710 76 0 0.00 82 20 19.61 - - - C3 0 genome.wustl.edu 37 19 6712375 6712375 + Missense_Mutation SNP G G C TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 19 6712375 6712375 G C SNP C3 ENST00000245907 human ensembl 69_37n -1 known missense c.1162 p.P388A 0.376 NULL pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn - no_errors C3 HGNC ENSG00000125730 36 0 0.00 56 11 16.42 - - - DNAH14 0 genome.wustl.edu 37 1 225230754 225230754 + Frame_Shift_Del DEL A A - TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 1 225230754 225230754 A - DEL DNAH14 ENST00000430092 human ensembl 69_37n +1 known frame_shift_del c.1706 p.E569fs 0.006 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Tautomerase,smart_AAA+_ATPase - no_errors DNAH14 HGNC ENSG00000185842 27 0 0.00 40 5 11.11 - - - EPC1 0 genome.wustl.edu 37 10 32558007 32558007 + Missense_Mutation SNP G G A TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 10 32558007 32558007 G A SNP EPC1 ENST00000263062 human ensembl 69_37n -1 known missense c.2495 p.A832V 1.000 pfam_Enhancer_polycomb_C pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N - no_errors EPC1 HGNC ENSG00000120616 80 0 0.00 121 19 13.57 - - - IDE 0 genome.wustl.edu 37 10 94234712 94234712 + Nonsense_Mutation SNP G G A TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 10 94234712 94234712 G A SNP IDE ENST00000265986 human ensembl 69_37n -1 known nonsense c.2002 p.R668* 1.000 superfamily_Metalloenz_metal-bd pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd - no_errors IDE HGNC ENSG00000119912 45 0 0.00 46 6 11.54 - - - IFI35 0 genome.wustl.edu 37 17 41165618 41165618 + Silent SNP C C T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 17 41165618 41165618 C T SNP IFI35 ENST00000438323 human ensembl 69_37n +1 known silent c.507 p.G169 0.097 pfam_Nmi/IFP35 pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N - no_errors IFI35 HGNC ENSG00000068079 70 0 0.00 95 15 13.64 - - - LRBA 0 genome.wustl.edu 37 4 151935687 151935687 + Silent SNP T T C TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 4 151935687 151935687 T C SNP LRBA ENST00000357115 human ensembl 69_37n -1 known silent c.108 p.K36 0.917 NULL pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom - no_errors LRBA HGNC ENSG00000198589 39 0 0.00 40 6 13.04 - - - LUC7L3 0 genome.wustl.edu 37 17 48818484 48818484 + Frame_Shift_Del DEL C C - TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 17 48818484 48818484 C - DEL LUC7L3 ENST00000240304 human ensembl 69_37n +1 known frame_shift_del c.228 p.F76fs 0.997 pfam_LUC7-rel pfam_LUC7-rel - no_errors LUC7L3 HGNC ENSG00000108848 53 0 0.00 69 22 24.18 - - - MPEG1 0 genome.wustl.edu 37 11 58979086 58979086 + Missense_Mutation SNP G G A TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 11 58979086 58979086 G A SNP MPEG1 ENST00000361050 human ensembl 69_37n -1 known missense c.1253 p.P418L 0.066 NULL pfam_MACPF,smart_MACPF - no_errors MPEG1 HGNC ENSG00000197629 42 0 0.00 42 7 14.29 - - - NIN 0 genome.wustl.edu 37 14 51243678 51243678 + Missense_Mutation SNP C C A TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 14 51243678 51243678 C A SNP NIN ENST00000245441 human ensembl 69_37n -1 known missense c.655 p.V219L 0.001 NULL superfamily_tRNA-bd_arm,pfscan_EF_HAND_2 - no_errors NIN HGNC ENSG00000100503 31 0 0.00 45 11 19.64 - - - ODF2 0 genome.wustl.edu 37 9 131221854 131221854 + Missense_Mutation SNP C C T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 9 131221854 131221854 C T SNP ODF2 ENST00000372796 human ensembl 69_37n +1 known missense c.41 p.S14L 1.000 NULL NULL - no_errors ODF2 HGNC ENSG00000136811 41 0 0.00 57 9 13.64 - - - OR2T33 0 genome.wustl.edu 37 1 248436655 248436655 + Silent SNP C C G TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 1 248436655 248436655 C G SNP OR2T33 ENST00000318021 human ensembl 69_37n -1 known silent c.462 p.G154 0.038 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR2T33 HGNC ENSG00000177212 40 0 0.00 96 16 14.29 - - - PLCB4 0 genome.wustl.edu 37 20 9417764 9417764 + Missense_Mutation SNP C C T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 20 9417764 9417764 C T SNP PLCB4 ENST00000334005 human ensembl 69_37n +1 known missense c.2693 p.T898M 0.996 pirsf_PLC-beta pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y - no_errors PLCB4 HGNC ENSG00000101333 18 0 0.00 43 10 18.87 - - - PLOD3 0 genome.wustl.edu 37 7 100856163 100856163 + Missense_Mutation SNP C C G TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 7 100856163 100856163 C G SNP PLOD3 ENST00000223127 human ensembl 69_37n -1 known missense c.839 p.G280A 0.980 NULL pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph - no_errors PLOD3 HGNC ENSG00000106397 16 0 0.00 17 6 26.09 - - - TP53 0 genome.wustl.edu 37 17 7579344 7579344 + Frame_Shift_Del DEL G G - TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 17 7579344 7579344 G - DEL TP53 ENST00000269305 human ensembl 69_37n -1 known frame_shift_del c.343 p.H115fs 0.938 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 19 0 0.00 21 7 24.14 - - - WNK1 0 genome.wustl.edu 37 12 970297 970297 + Frame_Shift_Del DEL A A - TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 12 970297 970297 A - DEL WNK1 ENST00000530271 human ensembl 69_37n +1 known frame_shift_del c.1739 p.K583fs 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors WNK1 HGNC ENSG00000060237 19 0 0.00 14 4 21.05 - - - ZBTB9 0 genome.wustl.edu 37 6 33423544 33423544 + Missense_Mutation SNP G G A TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 6 33423544 33423544 G A SNP ZBTB9 ENST00000395064 human ensembl 69_37n +1 known missense c.667 p.D223N 0.807 NULL pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB9 HGNC ENSG00000213588 20 0 0.00 25 7 21.88 - - - ZNF717 0 genome.wustl.edu 37 3 75790810 75790811 + Frame_Shift_Ins INS - - T TCGA-E9-A248-01A-11D-A167-09 TCGA-E9-A248-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fee90b4e-f005-4b40-a9af-d1e590b1e8a8 6964baa2-3344-49db-ad80-1e28ae93e53c 3 75790810 75790811 - T INS ZNF717 ENST00000422325 human ensembl 69_37n -1 known frame_shift_ins c.135_134 p.L46fs 0.999:0.997 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF717 HGNC ENSG00000227124 19 0 0.00 31 7 18.42 - - -