Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All C1orf65 0 genome.wustl.edu 37 1 223567541 223567541 + Missense_Mutation SNP G G A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 1 223567541 223567541 G A SNP C1orf65 ENST00000366875 human ensembl 69_37n +1 known missense c.724 p.V242I 0.000 NULL NULL - no_errors C1orf65 HGNC ENSG00000178395 10 0 0.00 23 9 28.12 - - - CCDC50 0 genome.wustl.edu 37 3 191047486 191047486 + Missense_Mutation SNP A A T TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 3 191047486 191047486 A T SNP CCDC50 ENST00000392456 human ensembl 69_37n +1 known missense c.23 p.Q8L 1.000 NULL NULL - no_errors CCDC50 HGNC ENSG00000152492 16 0 0.00 10 6 37.50 - - - CCPG1 0 genome.wustl.edu 37 15 55677882 55677882 + Missense_Mutation SNP T T A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 15 55677882 55677882 T A SNP CCPG1 ENST00000310958 human ensembl 69_37n -1 known missense c.91 p.T31S 0.756 NULL NULL - no_errors CCPG1 HGNC ENSG00000260916 51 0 0.00 41 15 26.79 - - - CTNNAL1 0 genome.wustl.edu 37 9 111734985 111734985 + Missense_Mutation SNP T T A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 9 111734985 111734985 T A SNP CTNNAL1 ENST00000325551 human ensembl 69_37n -1 known missense c.1317 p.K439N 1.000 pfam_Vinculin/catenin,superfamily_Vinculin/catenin pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin - no_errors CTNNAL1 HGNC ENSG00000119326 79 0 0.00 64 28 30.43 - - - DMP1 0 genome.wustl.edu 37 4 88584083 88584083 + Missense_Mutation SNP G G A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 4 88584083 88584083 G A SNP DMP1 ENST00000339673 human ensembl 69_37n +1 known missense c.1153 p.E385K 0.529 pfam_DMP1 pfam_DMP1 - no_errors DMP1 HGNC ENSG00000152592 53 0 0.00 33 10 23.26 - - - DNAH9 0 genome.wustl.edu 37 17 11603195 11603195 + Missense_Mutation SNP G G A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 17 11603195 11603195 G A SNP DNAH9 ENST00000262442 human ensembl 69_37n +1 known missense c.5020 p.G1674R 1.000 pfam_Dynein_heavy_dom-2 pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DNAH9 HGNC ENSG00000007174 40 0 0.00 28 15 34.88 - - - HSPA5 0 genome.wustl.edu 37 9 128001333 128001333 + Frame_Shift_Del DEL C C - TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 9 128001333 128001333 C - DEL HSPA5 ENST00000324460 human ensembl 69_37n -1 known frame_shift_del c.883 p.A295fs 1.000 pfam_Hsp_70_fam,pfam_MreB_Mrl pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam - no_errors HSPA5 HGNC ENSG00000044574 62 0 0.00 50 15 22.39 - - - LCA5 0 genome.wustl.edu 37 6 80222980 80222980 + Missense_Mutation SNP C C A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 6 80222980 80222980 C A SNP LCA5 ENST00000369846 human ensembl 69_37n -1 known missense c.669 p.K223N 1.000 NULL NULL - no_errors LCA5 HGNC ENSG00000135338 100 0 0.00 73 32 30.48 - - - MAMDC4 0 genome.wustl.edu 37 9 139753216 139753216 + Missense_Mutation SNP G G A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 9 139753216 139753216 G A SNP MAMDC4 ENST00000445819 human ensembl 69_37n +1 known missense c.3104 p.R1035Q 0.149 pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom - no_errors MAMDC4 HGNC ENSG00000177943 28 0 0.00 16 6 27.27 - - - MUM1 0 genome.wustl.edu 37 19 1362249 1362249 + Missense_Mutation SNP A A G TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 19 1362249 1362249 A G SNP MUM1 ENST00000344663 human ensembl 69_37n +1 known missense c.1115 p.E372G 0.039 NULL pfam_PWWP - no_errors MUM1 HGNC ENSG00000160953 39 0 0.00 21 8 27.59 - - - MYO16 0 genome.wustl.edu 37 13 109704802 109704802 + Missense_Mutation SNP G G T TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 13 109704802 109704802 G T SNP MYO16 ENST00000356711 human ensembl 69_37n +1 known missense c.2961 p.K987N 0.997 pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYO16 HGNC ENSG00000041515 62 0 0.00 43 10 18.87 - - - NDUFB9 0 genome.wustl.edu 37 8 125555378 125555378 + Missense_Mutation SNP A A G TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 8 125555378 125555378 A G SNP NDUFB9 ENST00000276689 human ensembl 69_37n +1 known missense c.152 p.H51R 1.000 pfam_Complex1_LYR pfam_Complex1_LYR - no_errors NDUFB9 HGNC ENSG00000147684 57 0 0.00 42 17 28.81 - - - OR5V1 0 genome.wustl.edu 37 6 29323445 29323445 + Nonsense_Mutation SNP G G T TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 6 29323445 29323445 G T SNP OR5V1 ENST00000377151 human ensembl 69_37n -1 known nonsense c.528 p.Y176* 0.559 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR5V1 HGNC ENSG00000243729 23 0 0.00 24 9 27.27 - - - PCDHGA5 0 genome.wustl.edu 37 5 140744030 140744030 + Missense_Mutation SNP G G A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 5 140744030 140744030 G A SNP PCDHGA5 ENST00000518069 human ensembl 69_37n +1 known missense c.133 p.V45I 1.000 pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA5 HGNC ENSG00000253485 40 0 0.00 20 14 41.18 - - - PLXNB3 0 genome.wustl.edu 37 X 153043072 153043072 + Missense_Mutation SNP C C A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 X 153043072 153043072 C A SNP PLXNB3 ENST00000538966 human ensembl 69_37n +1 known missense c.5259 p.D1753E 1.000 pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag - no_errors PLXNB3 HGNC ENSG00000198753 64 0 0.00 28 12 30.00 - - - SLC2A12 0 genome.wustl.edu 37 6 134323224 134323225 + Frame_Shift_Ins INS - - A TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 6 134323224 134323225 - A INS SLC2A12 ENST00000275230 human ensembl 69_37n -1 known frame_shift_ins c.1611_1610 p.M537fs 1.000:1.000 pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt - no_errors SLC2A12 HGNC ENSG00000146411 80 0 0.00 51 25 32.89 - - - SLIT2 0 genome.wustl.edu 37 4 20541090 20541090 + Missense_Mutation SNP G G T TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 4 20541090 20541090 G T SNP SLIT2 ENST00000504154 human ensembl 69_37n +1 known missense c.1859 p.C620F 1.000 smart_Leu-rich_rpt_typical-subtyp pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors SLIT2 HGNC ENSG00000145147 148 0 0.00 80 29 26.61 - - - UBE2D3 0 genome.wustl.edu 37 4 103730974 103730974 + Missense_Mutation SNP A A C TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 4 103730974 103730974 A C SNP UBE2D3 ENST00000357194 human ensembl 69_37n -1 known missense c.69 p.C23W 1.000 pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2 pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2 - no_errors UBE2D3 HGNC ENSG00000109332 75 0 0.00 51 30 37.04 - - - WNK1 0 genome.wustl.edu 37 12 970297 970297 + Frame_Shift_Del DEL A A - TCGA-E9-A24A-01A-11D-A167-09 TCGA-E9-A24A-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d11d3770-a4f4-4d15-94f4-149cca27d391 0702eb13-b159-471d-b602-092f1f173a80 12 970297 970297 A - DEL WNK1 ENST00000530271 human ensembl 69_37n +1 known frame_shift_del c.1739 p.K583fs 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors WNK1 HGNC ENSG00000060237 33 0 0.00 22 4 15.38 - - -