Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All C2orf42 0 genome.wustl.edu 37 2 70377626 70377626 + Silent SNP T T C TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 2 70377626 70377626 T C SNP C2orf42 ENST00000264434 human ensembl 69_37n -1 known silent c.1587 p.Q529 0.062 NULL NULL - no_errors C2orf42 HGNC ENSG00000115998 27 0 0.00 16 3 15.79 - - - CACNA1A 0 genome.wustl.edu 37 19 13563741 13563741 + Missense_Mutation SNP G G T TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 19 13563741 13563741 G T SNP CACNA1A ENST00000360228 human ensembl 69_37n -1 known missense c.488 p.S163Y 1.000 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su - no_errors CACNA1A HGNC ENSG00000141837 51 0 0.00 48 7 12.73 - - - CCDC170 0 genome.wustl.edu 37 6 151857489 151857489 + Missense_Mutation SNP C C T TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 6 151857489 151857489 C T SNP CCDC170 ENST00000367290 human ensembl 69_37n +1 known missense c.94 p.R32W 0.794 NULL superfamily_Prefoldin,superfamily_Smac_DIABLO-like - no_errors CCDC170 HGNC ENSG00000120262 29 0 0.00 44 8 15.38 - - - CEACAMP10 0 genome.wustl.edu 37 19 43719516 43719517 + RNA INS - - C TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 19 43719516 43719517 - C INS CEACAMP10 ENST00000489959 human ensembl 69_37n -1 known rna NULL NULL 0.001:0.002 - - - no_errors CEACAMP10 HGNC ENSG00000241104 13 0 0.00 6 5 45.45 - - - DNAJC13 0 genome.wustl.edu 37 3 132192020 132192020 + Missense_Mutation SNP A A G TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 3 132192020 132192020 A G SNP DNAJC13 ENST00000260818 human ensembl 69_37n +1 known missense c.2240 p.K747R 1.000 superfamily_ARM-type_fold pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N - no_errors DNAJC13 HGNC ENSG00000138246 70 0 0.00 58 10 14.49 - - - FAM75A7 0 genome.wustl.edu 37 9 65506508 65506508 + Missense_Mutation SNP G G T TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 9 65506508 65506508 G T SNP FAM75A7 ENST00000355045 human ensembl 69_37n -1 known missense c.1052 p.T351K 0.000 NULL NULL - no_errors FAM75A7 HGNC ENSG00000234734 74 0 0.00 81 15 15.62 - - - FBXO2 0 genome.wustl.edu 37 1 11708829 11708829 + Silent SNP G G A TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 1 11708829 11708829 G A SNP FBXO2 ENST00000354287 human ensembl 69_37n -1 known silent c.813 p.H271 0.999 pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom - no_errors FBXO2 HGNC ENSG00000116661 118 1 0.84 91 13 12.50 - - - GLT6D1 0 genome.wustl.edu 37 9 138517918 138517918 + Missense_Mutation SNP C C T TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 9 138517918 138517918 C T SNP GLT6D1 ENST00000371763 human ensembl 69_37n -1 known missense c.254 p.G85D 0.000 pfam_Glyco_trans_6 pfam_Glyco_trans_6 - no_errors GLT6D1 HGNC ENSG00000204007 63 0 0.00 69 10 12.66 - - - HTT 0 genome.wustl.edu 37 4 3156030 3156030 + Missense_Mutation SNP C C G TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 4 3156030 3156030 C G SNP HTT ENST00000355072 human ensembl 69_37n +1 known missense c.3509 p.P1170R 1.000 NULL pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin - no_errors HTT HGNC ENSG00000197386 21 0 0.00 32 6 15.79 - - - IFT122 0 genome.wustl.edu 37 3 129225273 129225274 + Frame_Shift_Del DEL AG AG - TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 3 129225273 129225274 AG - DEL IFT122 ENST00000296266 human ensembl 69_37n +1 known frame_shift_del c.2825_2826 p.E944fs 1.000:0.995 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT122 HGNC ENSG00000163913 79 0 0.00 101 15 12.93 - - - LRRC66 0 genome.wustl.edu 37 4 52883636 52883636 + Missense_Mutation SNP A A C TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 4 52883636 52883636 A C SNP LRRC66 ENST00000343457 human ensembl 69_37n -1 known missense c.144 p.F48L 0.037 NULL pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp - no_errors LRRC66 HGNC ENSG00000188993 16 0 0.00 27 6 18.18 - - - NELL1 0 genome.wustl.edu 37 11 21305884 21305884 + RNA SNP A A G TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 11 21305884 21305884 A G SNP NELL1 ENST00000529218 human ensembl 69_37n +1 known rna NULL NULL 0.202 - - - no_errors NELL1 HGNC ENSG00000165973 50 0 0.00 60 12 16.67 - - - PKLR 0 genome.wustl.edu 37 1 155265263 155265263 + Missense_Mutation SNP T T G TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 1 155265263 155265263 T G SNP PKLR ENST00000342741 human ensembl 69_37n -1 known missense c.472 p.K158Q 1.000 pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,prints_Pyr_Knase,tigrfam_Pyr_Knase pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase - no_errors PKLR HGNC ENSG00000143627 81 0 0.00 70 20 22.22 - - - PPIF 0 genome.wustl.edu 37 10 81113525 81113527 + In_Frame_Del DEL TAG TAG - TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 TAG TAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 10 81113525 81113527 TAG - DEL PPIF ENST00000225174 human ensembl 69_37n +1 known in_frame_del c.551_553 p.IE184in_frame_delK 1.000:0.902:1.000 pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom - no_errors PPIF HGNC ENSG00000108179 41 0 0.00 25 3 10.71 - - - SAFB2 0 genome.wustl.edu 37 19 5621373 5621373 + Missense_Mutation SNP A A G TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 19 5621373 5621373 A G SNP SAFB2 ENST00000252542 human ensembl 69_37n -1 known missense c.221 p.I74T 0.579 NULL pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom - no_errors SAFB2 HGNC ENSG00000130254 41 0 0.00 53 9 14.52 - - - TNS1 0 genome.wustl.edu 37 2 218712887 218712889 + In_Frame_Del DEL GCT GCT - TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 GCT GCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 2 218712887 218712889 GCT - DEL TNS1 ENST00000171887 human ensembl 69_37n -1 known in_frame_del c.1978_1976 p.Q659in_frame_del 1.000:1.000:0.994 NULL pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom - no_errors TNS1 HGNC ENSG00000079308 32 0 0.00 27 4 12.90 - - - XRN2 0 genome.wustl.edu 37 20 21314341 21314341 + Splice_Site SNP G G A TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 20 21314341 21314341 G A SNP XRN2 ENST00000377191 human ensembl 69_37n +1 known splice_site c.934-1 e11-1 1.000 - - - no_errors XRN2 HGNC ENSG00000088930 49 0 0.00 70 14 16.67 - - - ZBTB41 0 genome.wustl.edu 37 1 197144179 197144179 + Missense_Mutation SNP T T C TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 1 197144179 197144179 T C SNP ZBTB41 ENST00000367405 human ensembl 69_37n -1 known missense c.1946 p.H649R 1.000 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2 - no_errors ZBTB41 HGNC ENSG00000177888 45 0 0.00 58 8 12.12 - - - ZNF687 0 genome.wustl.edu 37 1 151259169 151259169 + Silent SNP C C T TCGA-E9-A5FK-01A-11D-A27P-09 TCGA-E9-A5FK-10A-01D-A27P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d5fb5ae8-cfb8-406c-a960-0507b27db129 3cd5ee75-fb7f-4adf-af2b-08064e99a220 1 151259169 151259169 C T SNP ZNF687 ENST00000324048 human ensembl 69_37n +1 known silent c.402 p.L134 0.548 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF687 HGNC ENSG00000143373 49 0 0.00 42 5 10.64 - - -