Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ASB10 0 genome.wustl.edu 37 7 150884267 150884268 + Frame_Shift_Del DEL AG AG - TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 7 150884267 150884268 AG - DEL ASB10 ENST00000422024 human ensembl 69_37n -1 known frame_shift_del c.86_85 p.L29fs 0.003:0.000 NULL pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C - no_errors ASB10 HGNC ENSG00000146926 12 0 0.00 10 3 23.08 - - - CDK5RAP2 0 genome.wustl.edu 37 9 123223027 123223027 + Splice_Site DEL T T - TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 9 123223027 123223027 T - DEL CDK5RAP2 ENST00000480112 human ensembl 69_37n -1 known splice_site_del c.2104-2 e19-2 0.979 - - - no_errors CDK5RAP2 HGNC ENSG00000136861 27 0 0.00 22 4 15.38 - - - DLG3 0 genome.wustl.edu 37 X 69722031 69722031 + Nonsense_Mutation SNP C C G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 X 69722031 69722031 C G SNP DLG3 ENST00000194900 human ensembl 69_37n +1 known nonsense c.2462 p.S821* 1.000 pfam_Guanylate_kin,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin pfam_Guanylate_kin,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin - no_errors DLG3 HGNC ENSG00000082458 94 0 0.00 54 9 14.29 - - - FAM186A 0 genome.wustl.edu 37 12 50747334 50747334 + Missense_Mutation SNP G G T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 12 50747334 50747334 G T SNP FAM186A ENST00000327337 human ensembl 69_37n -1 known missense c.3281 p.A1094D 0.000 NULL NULL - no_errors FAM186A HGNC ENSG00000185958 125 0 0.00 57 23 28.75 - - - FAM186A 0 genome.wustl.edu 37 12 50747335 50747335 + Missense_Mutation SNP C C T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 12 50747335 50747335 C T SNP FAM186A ENST00000327337 human ensembl 69_37n -1 known missense c.3280 p.A1094T 0.000 NULL NULL - no_errors FAM186A HGNC ENSG00000185958 125 0 0.00 57 21 26.92 - - - FAM22G 0 genome.wustl.edu 37 9 99699543 99699543 + Missense_Mutation SNP C C T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 9 99699543 99699543 C T SNP FAM22G ENST00000372322 human ensembl 69_37n +1 known missense c.1180 p.H394Y 0.000 NULL NULL - no_errors FAM22G HGNC ENSG00000188152 62 0 0.00 31 4 11.43 - - - GNPTAB 0 genome.wustl.edu 37 12 102151069 102151069 + Missense_Mutation SNP C C T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 12 102151069 102151069 C T SNP GNPTAB ENST00000299314 human ensembl 69_37n -1 known missense c.3355 p.E1119K 1.000 NULL pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_HAND_2,pfscan_Notch_dom - no_errors GNPTAB HGNC ENSG00000111670 87 0 0.00 40 5 11.11 - - - KPNA3 0 genome.wustl.edu 37 13 50296658 50296658 + Nonsense_Mutation SNP G G A TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 13 50296658 50296658 G A SNP KPNA3 ENST00000261667 human ensembl 69_37n -1 known nonsense c.511 p.Q171* 1.000 pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB - no_errors KPNA3 HGNC ENSG00000102753 34 0 0.00 32 6 15.79 - - - KRTAP4-7 0 genome.wustl.edu 37 17 39240627 39240627 + Missense_Mutation SNP T T C TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 17 39240627 39240627 T C SNP KRTAP4-7 ENST00000391417 human ensembl 69_37n +1 known missense c.169 p.S57P 0.032 pfam_Keratin-assoc pfam_Keratin-assoc - no_errors KRTAP4-7 HGNC ENSG00000240871 67 0 0.00 30 4 11.76 - - - MIR142 0 genome.wustl.edu 37 17 56408664 56408664 + RNA SNP G G T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 17 56408664 56408664 G T SNP MIR142 ENST00000384835 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors MIR142 HGNC ENSG00000207567 44 0 0.00 19 8 29.63 - - - MYO7B 0 genome.wustl.edu 37 2 128394164 128394164 + Missense_Mutation SNP C C G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 2 128394164 128394164 C G SNP MYO7B ENST00000389524 human ensembl 69_37n +1 known missense c.6093 p.I2031M 1.000 pfscan_FERM_domain pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom - no_errors MYO7B HGNC ENSG00000169994 57 0 0.00 34 4 10.53 - - - PGAM2 0 genome.wustl.edu 37 7 44104972 44104972 + Missense_Mutation SNP C C G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 7 44104972 44104972 C G SNP PGAM2 ENST00000297283 human ensembl 69_37n -1 known missense c.157 p.D53H 1.000 pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1 pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1 - no_errors PGAM2 HGNC ENSG00000164708 59 0 0.00 34 6 15.00 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 43 0 0.00 15 7 31.82 - - - PRX 0 genome.wustl.edu 37 19 40900968 40900968 + Frame_Shift_Del DEL G G - TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 19 40900968 40900968 G - DEL PRX ENST00000324001 human ensembl 69_37n -1 known frame_shift_del c.3291 p.E1098fs 0.105 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors PRX HGNC ENSG00000105227 26 0 0.00 16 2 11.11 - - - RAD51B 0 genome.wustl.edu 37 14 68292285 68292285 + Missense_Mutation SNP G G T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 14 68292285 68292285 G T SNP RAD51B ENST00000487270 human ensembl 69_37n +1 known missense c.189 p.K63N 0.966 superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,pfam_DNA_recomb/repair_RecA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd - no_errors RAD51B HGNC ENSG00000182185 76 0 0.00 45 9 16.67 - - - SERPINI2 0 genome.wustl.edu 37 3 167183403 167183403 + Silent SNP C C G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 3 167183403 167183403 C G SNP SERPINI2 ENST00000264677 human ensembl 69_37n -1 known silent c.537 p.L179 1.000 pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPINI2 HGNC ENSG00000114204 78 0 0.00 38 12 24.00 - - - SLIT2 0 genome.wustl.edu 37 4 20555534 20555534 + Missense_Mutation SNP G G C TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 4 20555534 20555534 G C SNP SLIT2 ENST00000504154 human ensembl 69_37n +1 known missense c.2668 p.G890R 1.000 pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G - no_errors SLIT2 HGNC ENSG00000145147 72 0 0.00 33 11 25.00 - - - TBX20 0 genome.wustl.edu 37 7 35244129 35244129 + Missense_Mutation SNP C C T TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 7 35244129 35244129 C T SNP TBX20 ENST00000408931 human ensembl 69_37n -1 known missense c.956 p.G319E 1.000 NULL pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box - no_errors TBX20 HGNC ENSG00000164532 51 0 0.00 36 4 10.00 - - - TOB1 0 genome.wustl.edu 37 17 48940939 48940939 + Missense_Mutation SNP G G A TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 17 48940939 48940939 G A SNP TOB1 ENST00000268957 human ensembl 69_37n -1 known missense c.440 p.S147L 1.000 NULL pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn - no_errors TOB1 HGNC ENSG00000141232 58 0 0.00 37 5 11.90 - - - TTI1 0 genome.wustl.edu 37 20 36641777 36641777 + Silent SNP G G A TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 20 36641777 36641777 G A SNP TTI1 ENST00000373447 human ensembl 69_37n -1 known silent c.442 p.L148 1.000 superfamily_ARM-type_fold,pirsf_UCP005250 superfamily_ARM-type_fold,pirsf_UCP005250 - no_errors TTI1 HGNC ENSG00000101407 34 0 0.00 23 5 17.86 - - - ULK1 0 genome.wustl.edu 37 12 132403858 132403858 + Frame_Shift_Del DEL G G - TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 12 132403858 132403858 G - DEL ULK1 ENST00000321867 human ensembl 69_37n +1 known frame_shift_del c.2613 p.G873fs 0.001 pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors ULK1 HGNC ENSG00000177169 10 0 0.00 4 2 33.33 - - - ZNF701 0 genome.wustl.edu 37 19 53079273 53079273 + Silent SNP G G A TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 19 53079273 53079273 G A SNP ZNF701 ENST00000301093 human ensembl 69_37n +1 known silent c.339 p.L113 0.988 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF701 HGNC ENSG00000167562 56 0 0.00 32 4 11.11 - - - ZZEF1 0 genome.wustl.edu 37 17 3975955 3975955 + Missense_Mutation SNP C C G TCGA-EW-A1IX-01A-12D-A142-09 TCGA-EW-A1IX-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 01ea194f-dc06-4e15-9b9e-1c73668040e0 034e0751-b08d-4f11-8c52-a7e4f1267f47 17 3975955 3975955 C G SNP ZZEF1 ENST00000381638 human ensembl 69_37n -1 known missense c.3781 p.E1261Q 1.000 NULL pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB,smart_EF_hand_Ca-bd,smart_Znf_ZZ,pfscan_EF_HAND_2,pfscan_Znf_ZZ - no_errors ZZEF1 HGNC ENSG00000074755 70 0 0.00 35 4 10.26 - - -