Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AR 0 genome.wustl.edu 37 X 66943562 66943562 + Missense_Mutation SNP T T A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 X 66943562 66943562 T A SNP AR ENST00000374690 human ensembl 69_37n +1 known missense c.2642 p.L881Q 1.000 pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt - no_errors AR HGNC ENSG00000169083 39 0 0.00 35 8 18.60 - - - ATP11C 0 genome.wustl.edu 37 X 138897073 138897073 + Silent SNP A A G TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 X 138897073 138897073 A G SNP ATP11C ENST00000327569 human ensembl 69_37n -1 known silent c.399 p.N133 0.998 pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP11C HGNC ENSG00000101974 94 0 0.00 41 24 36.92 - - - C17orf99 0 genome.wustl.edu 37 17 76157073 76157073 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 17 76157073 76157073 G A SNP C17orf99 ENST00000586999 human ensembl 69_37n +1 novel missense c.295 p.G99R 0.293 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region C17orf99 HGNC ENSG00000187997 46 0 0.00 34 29 46.03 - - - CACNA1C 0 genome.wustl.edu 37 12 2797847 2797847 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 12 2797847 2797847 G A SNP CACNA1C ENST00000399634 human ensembl 69_37n +1 known missense c.6232 p.A2078T 0.193 NULL pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su - no_errors CACNA1C HGNC ENSG00000151067 64 0 0.00 46 17 26.56 - - - CARD14 0 genome.wustl.edu 37 17 78157880 78157880 + Missense_Mutation SNP T T A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 17 78157880 78157880 T A SNP CARD14 ENST00000344227 human ensembl 69_37n +1 known missense c.518 p.L173Q 0.991 NULL pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin - no_errors CARD14 HGNC ENSG00000141527 37 0 0.00 41 34 45.33 - - - CCDC60 0 genome.wustl.edu 37 12 119968836 119968836 + Silent SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 12 119968836 119968836 C T SNP CCDC60 ENST00000327554 human ensembl 69_37n +1 known silent c.1519 p.L507 0.972 NULL NULL - no_errors CCDC60 HGNC ENSG00000183273 46 0 0.00 47 13 21.67 - - - CD93 0 genome.wustl.edu 37 20 23066315 23066315 + Missense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 20 23066315 23066315 C T SNP CD93 ENST00000246006 human ensembl 69_37n -1 known missense c.515 p.G172E 0.001 superfamily_C-type_lectin_fold,smart_C-type_lectin,pirsf_CD93/CD141 pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin - no_errors CD93 HGNC ENSG00000125810 48 0 0.00 24 11 31.43 - - - CDH1 0 genome.wustl.edu 37 16 68855914 68855915 + Frame_Shift_Ins INS - - G TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 16 68855914 68855915 - G INS CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_ins c.1722_1723 p.A574fs 0.004:0.998 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 53 0 0.00 23 18 43.90 - - - CHEK2 0 genome.wustl.edu 37 22 29130481 29130481 + Missense_Mutation SNP C C G TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 22 29130481 29130481 C G SNP CHEK2 ENST00000382580 human ensembl 69_37n -1 known missense c.229 p.D77H 1.000 superfamily_SMAD_FHA_domain pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom - no_errors CHEK2 HGNC ENSG00000183765 40 0 0.00 18 12 40.00 - - - CYP4X1 0 genome.wustl.edu 37 1 47497137 47497137 + Missense_Mutation SNP T T A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 1 47497137 47497137 T A SNP CYP4X1 ENST00000371901 human ensembl 69_37n +1 known missense c.349 p.S117T 0.006 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II - no_errors CYP4X1 HGNC ENSG00000186377 54 0 0.00 48 7 12.73 - - - DBH 0 genome.wustl.edu 37 9 136509403 136509403 + Missense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 9 136509403 136509403 C T SNP DBH ENST00000393056 human ensembl 69_37n +1 known missense c.985 p.R329C 1.000 pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase - no_errors DBH HGNC ENSG00000123454 40 0 0.00 24 9 27.27 - - - DPYD 0 genome.wustl.edu 37 1 98144721 98144721 + Missense_Mutation SNP G G T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 1 98144721 98144721 G T SNP DPYD ENST00000370192 human ensembl 69_37n -1 known missense c.780 p.S260R 1.000 pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH - no_errors DPYD HGNC ENSG00000188641 102 0 0.00 36 4 10.00 - - - DST 0 genome.wustl.edu 37 6 56484354 56484354 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 6 56484354 56484354 G A SNP DST ENST00000370765 human ensembl 69_37n -1 known missense c.4478 p.A1493V 0.062 NULL pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat - no_errors DST HGNC ENSG00000151914 99 0 0.00 37 18 32.73 - - - FLOT2 0 genome.wustl.edu 37 17 27207860 27207860 + Silent SNP G G C TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 17 27207860 27207860 G C SNP FLOT2 ENST00000394908 human ensembl 69_37n -1 known silent c.1119 p.A373 0.153 NULL pfam_Band_7,smart_Band_7 - no_errors FLOT2 HGNC ENSG00000132589 64 0 0.00 70 55 44.00 - - - FREM2 0 genome.wustl.edu 37 13 39448667 39448667 + Frame_Shift_Del DEL C C - TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 13 39448667 39448667 C - DEL FREM2 ENST00000280481 human ensembl 69_37n +1 known frame_shift_del c.8225 p.V2743fs 0.997 NULL pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta - no_errors FREM2 HGNC ENSG00000150893 62 0 0.00 17 2 10.53 - - - GATA3 0 genome.wustl.edu 37 10 8111433 8111434 + Splice_Site DEL CA CA - TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 10 8111433 8111434 CA - DEL GATA3 ENST00000379328 human ensembl 69_37n +1 known splice_site_del c.925-3_925-2 e4-2 1.000:1.000 - - - no_errors GATA3 HGNC ENSG00000107485 64 0 0 59 10 14.49 - - - GFM1 0 genome.wustl.edu 37 3 158364565 158364565 + Missense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 3 158364565 158364565 C T SNP GFM1 ENST00000486715 human ensembl 69_37n +1 known missense c.401 p.A134V 1.000 pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom - no_errors GFM1 HGNC ENSG00000168827 71 0 0.00 52 11 17.46 - - - GRIA4 0 genome.wustl.edu 37 11 105769081 105769081 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 11 105769081 105769081 G A SNP GRIA4 ENST00000282499 human ensembl 69_37n +1 known missense c.813 p.M271I 1.000 pfam_ANF_lig-bd_rcpt pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt - no_errors GRIA4 HGNC ENSG00000152578 130 0 0.00 49 10 16.95 - - - HN1 0 genome.wustl.edu 37 17 73132263 73132263 + Nonsense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 17 73132263 73132263 C T SNP HN1 ENST00000356033 human ensembl 69_37n -1 known nonsense c.380 p.W127* 0.976 NULL NULL - no_errors HN1 HGNC ENSG00000189159 47 0 0.00 46 7 13.21 - - - MLXIPL 0 genome.wustl.edu 37 7 73021500 73021501 + Frame_Shift_Del DEL TG TG - TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 7 73021500 73021501 TG - DEL MLXIPL ENST00000456640 human ensembl 69_37n -1 putative frame_shift_del c.425_424 p.Q142fs 0.001:0.040 NULL NULL - no_start_codon:no_stop_codon:bad_bp_length_for_coding_region MLXIPL HGNC ENSG00000009950 22 0 0.00 28 6 17.14 - - - NBPF1 0 genome.wustl.edu 37 1 16889985 16889985 + RNA SNP T T C TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 1 16889985 16889985 T C SNP NBPF1 ENST00000392963 human ensembl 69_37n -1 known rna NULL NULL 0.040 - - - no_errors NBPF1 HGNC ENSG00000219481 18 0 0.00 17 5 22.73 - - - NEFM 0 genome.wustl.edu 37 8 24771948 24771948 + Silent SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 8 24771948 24771948 G A SNP NEFM ENST00000221166 human ensembl 69_37n +1 known silent c.642 p.S214 0.996 pfam_F,prints_Keratin_I pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I - no_errors NEFM HGNC ENSG00000104722 20 0 0.00 25 19 43.18 - - - PAPLN 0 genome.wustl.edu 37 14 73720553 73720553 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 14 73720553 73720553 G A SNP PAPLN ENST00000427855 human ensembl 69_37n +1 known missense c.1186 p.G396S 0.188 pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like - no_errors PAPLN HGNC ENSG00000100767 68 0 0.00 46 10 17.86 - - - PKD2L2 0 genome.wustl.edu 37 5 137230184 137230184 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 5 137230184 137230184 G A SNP PKD2L2 ENST00000508883 human ensembl 69_37n +1 known missense c.410 p.R137H 0.986 pfam_PKD1_2_channel,prints_PKD_2 pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2 - no_errors PKD2L2 HGNC ENSG00000078795 69 0 0.00 53 9 14.52 - - - PLCXD2 0 genome.wustl.edu 37 3 111432830 111432830 + Missense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 3 111432830 111432830 C T SNP PLCXD2 ENST00000477665 human ensembl 69_37n +1 known missense c.721 p.R241C 0.150 superfamily_PLC-like_Pdiesterase_TIM-brl pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom - no_errors PLCXD2 HGNC ENSG00000240891 42 0 0.00 27 7 20.59 - - - RIN3 0 genome.wustl.edu 37 14 93118714 93118714 + Silent SNP C C A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 14 93118714 93118714 C A SNP RIN3 ENST00000216487 human ensembl 69_37n +1 known silent c.1320 p.A440 0.000 NULL pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9 - no_errors RIN3 HGNC ENSG00000100599 37 0 0.00 19 4 17.39 - - - ROR2 0 genome.wustl.edu 37 9 94495597 94495597 + Silent SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 9 94495597 94495597 C T SNP ROR2 ENST00000375708 human ensembl 69_37n -1 known silent c.744 p.P248 0.668 pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors ROR2 HGNC ENSG00000169071 59 0 0.00 57 35 38.04 - - - SCAF8 0 genome.wustl.edu 37 6 155153526 155153526 + Missense_Mutation SNP G G A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 6 155153526 155153526 G A SNP SCAF8 ENST00000367186 human ensembl 69_37n +1 known missense c.3011 p.R1004K 1.000 NULL pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD,smart_RRM_dom,pfscan_RRM_dom - no_errors SCAF8 HGNC ENSG00000213079 24 0 0.00 17 10 35.71 - - - SDHAP2 0 genome.wustl.edu 37 3 195393030 195393030 + RNA SNP A A G TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 3 195393030 195393030 A G SNP SDHAP2 ENST00000429897 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors SDHAP2 HGNC ENSG00000215837 61 0 0.00 39 6 13.33 - - - SLC7A5P1 0 genome.wustl.edu 37 16 21458336 21458337 + RNA INS - - A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 16 21458336 21458337 - A INS SLC7A5P1 ENST00000520823 human ensembl 69_37n -1 known rna NULL NULL 0.847:0.918 - - - no_errors SLC7A5P1 HGNC ENSG00000180747 42 0 0.00 7 3 30.00 - - - STRBP 0 genome.wustl.edu 37 9 125909224 125909224 + Silent SNP T T A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 9 125909224 125909224 T A SNP STRBP ENST00000348403 human ensembl 69_37n -1 known silent c.1248 p.P416 0.996 pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd - no_errors STRBP HGNC ENSG00000165209 110 0 0.00 76 9 10.59 - - - USP8 0 genome.wustl.edu 37 15 50784950 50784950 + Missense_Mutation SNP C C T TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 15 50784950 50784950 C T SNP USP8 ENST00000307179 human ensembl 69_37n +1 known missense c.2287 p.R763W 1.000 NULL pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19 - no_errors USP8 HGNC ENSG00000138592 27 0 0.00 30 9 23.08 - - - USP8 0 genome.wustl.edu 37 15 50784955 50784955 + Missense_Mutation SNP C C A TCGA-OL-A66K-01A-11D-A29N-09 TCGA-OL-A66K-10A-01D-A29N-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6fc9000d-e958-4d57-aeef-fe948dfbd927 fa188ef9-cd0b-4db0-bd54-6a544ecef685 15 50784955 50784955 C A SNP USP8 ENST00000307179 human ensembl 69_37n +1 known missense c.2292 p.N764K 1.000 NULL pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19 - no_errors USP8 HGNC ENSG00000138592 26 0 0.00 24 13 35.14 - - -