Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204022462	204022462	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001114132	exon35	c.5540delT	p.L1847fs	GCTTTTGGAAGTA	.	88	26	48	0	.	.
NAIP	4671	hgsc.bcm.edu	37	5	70299665	70299666	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004536	exon6	c.688_689insT	p.K230_K231delinsX	ATTTCTTACTCCG	.	520	41	465	0	.	.
CTCF	10664	hgsc.bcm.edu	37	16	67650656	67650657	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006565	exon5	c.961_962insCT	p.P321fs	ACTCGTCCTCACA	.	48	13	64	0	.	.
SMA4	6606	hgsc.bcm.edu	37	5	69424242	69424243	+	RNA	INS	-	-	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	ATTTCTTACTCCG	.	503	36	509	0	.	.
MLXIPL	51085	hgsc.bcm.edu	37	7	73030462	73030463	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_032953	exon2	c.339_340insA	p.K113fs	GAGCAGCTTGAGG	.	53	15	41	0	.	.
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37098604	37098604	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006078	exon1	c.A18C	p.R6R	AACACCTCGATCA	.	71	5	84	0	.	.
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu	37	5	140347642	140347642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PCDHAC2,caecum,carcinoma,0,1	PCDHAC2	NM_031883	exon1	c.C1291T	p.R431W	CGAGAGCGGGTGG	.	23	3	22	0	.	0
CSMD3	114788	hgsc.bcm.edu	37	8	113349922	113349922	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CSMD3_ENST00000343508,caecum,carcinoma,+1,7	CSMD3_ENST00000343508	NM_198123	exon43	c.C6691A	p.R2231R	CATTTCGAAACGG	.	55	3	118	0	.	+1
ULK4	54986	hgsc.bcm.edu	37	3	41860985	41860985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.,10	.	NM_017886	exon19	c.A1778G	p.K593R	GGGTTCTTTTTTT	.	32	3	59	1	.	150
SNX31	169166	hgsc.bcm.edu;bcgsc.ca	37	8	101596346	101596346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_152628	exon12	c.C1163T	p.T388I	ATTTCTGTATTCT	.	72	4	75	0	.	.
RTF1	23168	hgsc.bcm.edu	37	15	41749983	41749983	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_015138	exon4	c.G571T	p.E191X	GATGAGGAAGACA	.	76	4	86	0	.	.
SELPLG	6404	hgsc.bcm.edu;bcgsc.ca	37	12	109017495	109017495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001206609	exon2	c.G637A	p.A213T	TGGCTGCTGGTGC	.	67	4	88	0	.	.
RTN4IP1	84816	hgsc.bcm.edu	37	6	107076815	107076815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	RTN4IP1,neck,malignant_melanoma,0,1	RTN4IP1	NM_032730	exon1	c.C82A	p.P28T	CTGAAGGCTTTTG	.	44	2	44	0	.	0
C17orf78	284099	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	35746204	35746204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_173625	exon6	c.G657T	p.K219N	CAGGAAGCTGTGC	.	29	4	33	0	.	.
NOL9	79707	hgsc.bcm.edu	37	1	6593398	6593398	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	NOL9,NS,carcinoma,0,1	NOL9	NM_024654	exon7	c.G1179A	p.V393V	GCTGAACACATAT	.	41	2	43	0	.	0
RLTPR	146206	hgsc.bcm.edu	37	16	67681421	67681421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001013838	exon11	c.C787T	p.R263X	TTTGTCCGACGAC	.	80	4	79	0	.	.
LRP4	4038	hgsc.bcm.edu;bcgsc.ca	37	11	46897416	46897416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002334	exon26	c.C3638A	p.P1213H	CCATTGGGCCATC	.	48	4	62	0	.	.
PRKX	5613	hgsc.bcm.edu;bcgsc.ca	37	X	3573313	3573313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005044	exon3	c.C476T	p.A159V	TCGATGGCACAGA	.	56	4	67	0	.	.
MLK7-AS1	339751	hgsc.bcm.edu	37	2	174123303	174123303	+	RNA	SNP	G	G	A	rs201302619		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	GAAAAAGGAAAAA	.	62	7	42	0	.	.
CYTB	0	hgsc.bcm.edu	37	MT	15744	15744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	ENST00000361789	exon1	c.T998C	p.L333P	ACCTCCTCATTCT	.	22	11	7	0	.	.
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134632323	134632323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_033138	exon8	c.G1597A	p.G533S	GAAGCCGGCAAAA	.	68	8	100	0	.	.
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158605703	158605703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_003126	exon38	c.G5432A	p.R1811Q	ACTCACCGGGCCT	.	33	13	37	0	.	.
LRRC1	55227	hgsc.bcm.edu	37	6	53764614	53764614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	LRRC1,NS,carcinoma,0,4	LRRC1	NM_018214	exon8	c.G712T	p.E238X	CCTGAAGAAATCA	.	109	4	136	0	.	0
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70964698	70964698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001851	exon24	c.C1633T	p.R545C	CATCACGGCCATC	.	72	17	78	0	.	.
OR10H4	126541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16060302	16060302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001004465	exon1	c.C485T	p.T162M	TGACAACGATAGT	.	37	10	68	0	.	.
PDGFD	80310	hgsc.bcm.edu	37	11	103870948	103870948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PDGFD_ENST00000393158,NS,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon2	c.G160A	p.E54K	TGGTCTCATCTCT	.	45	2	82	0	.	0
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205027755	205027755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005076	exon5	c.G451T	p.V151L	TGGGGGGTGATGT	.	32	13	46	0	.	.
BRCA1	672	hgsc.bcm.edu	37	17	41219699	41219699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	BRCA1,NS,carcinoma,0,1	BRCA1	NM_007300	exon17	c.A5063C	p.K1688T	GCAAACTTGTACA	.	42	2	47	0	.	0
KAT6A	7994	hgsc.bcm.edu	37	8	41806877	41806877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MYST3,NS,carcinoma,0,1	MYST3	NM_001099412	exon11	c.C1603A	p.P535T	ATTTGGGCAGCCT	.	77	3	57	0	.	0
CD6	923	hgsc.bcm.edu	37	11	60780933	60780933	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CD6_ENST00000313421,caecum,carcinoma,0,2	CD6_ENST00000313421	NM_006725	exon7	c.C1189A	p.R397R	GAATCTCGGGAGC	.	45	2	40	0	.	0
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38128387	38128387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_178171	exon6	c.C661A	p.P221T	GATATTCCACATA	.	42	12	58	0	.	.
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu	37	5	56557038	56557038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001127236	exon10	c.A1213G	p.S405G	GAAGACAGTGAAA	.	94	4	87	0	.	.
CRB1	23418	hgsc.bcm.edu	37	1	197313409	197313409	+	Splice_Site	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001257965	exon5	c.446-2A>G	.	TTTAAAAGGTGTA	.	90	4	106	0	.	.
EFNA5	1946	hgsc.bcm.edu	37	5	106762982	106762982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001962	exon2	c.C354A	p.F118L	GAGCTGGAATTTT	.	67	3	80	0	.	.
KIF9	64147	hgsc.bcm.edu	37	3	47284677	47284677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KIF9,colon,carcinoma,0,1	KIF9	NM_182902	exon16	c.G1573A	p.V525I	TGGAAACGTAATC	.	29	2	54	0	.	0
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	16462176	16462176	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004431	exon6	c.A1402T	p.K468X	CGTACTTCCACAC	.	45	9	75	0	.	.
SLAIN2	57606	hgsc.bcm.edu;bcgsc.ca	37	4	48385777	48385777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020846	exon6	c.C1336A	p.R446S	ATACCTCGTATGC	.	59	4	60	0	.	.
FBXO42	54455	hgsc.bcm.edu	37	1	16632409	16632409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	FBXO42,NS,carcinoma,0,1	FBXO42	NM_018994	exon3	c.G256A	p.A86T	GATGGGCTACACC	.	20	2	26	0	.	0
RNU6-28	100873756	hgsc.bcm.edu	37	15	43748037	43748037	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	ACTTTCCATTCCA	.	51	4	80	0	.	.
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44221323	44221323	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_007355	exon12	c.A2163G	p.E721E	CATGGAAGAAGTC	.	43	4	73	0	.	.
ALDH3A1	218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	19645434	19645434	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001135168	exon4	c.G572C	p.G191A	CCCACCCCCGTGC	.	14	6	16	0	.	.
HPS5	11234	hgsc.bcm.edu	37	11	18313248	18313248	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HPS5,NS,carcinoma,0,1	HPS5	NM_181507	exon16	c.C2181T	p.C727C	AATGGCGCATGGA	.	37	2	54	0	.	0
TSSC4	10078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2424013	2424013	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005706	exon2	c.C150T	p.S50S	ACTGTCCCCGATG	.	54	19	76	0	.	.
ND2	0	hgsc.bcm.edu	37	MT	5196	5196	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	ENST00000361453	exon1	c.T727C	p.L243L	ACACCCTTAATTC	.	39	19	13	0	.	.
DOK3	79930	hgsc.bcm.edu	37	5	176930174	176930174	+	Missense_Mutation	SNP	G	G	A	rs79945738	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	DOK3_ENST00000312943,colon,carcinoma,0,5	DOK3_ENST00000312943	NM_001144875	exon6	c.C865T	p.L289F	AGCAGAGGAGGGA	.	28	3	28	0	.	0
ATXN1L	342371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71884890	71884890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001137675	exon3	c.C1247A	p.A416D	TTGTAGCCAATGG	.	49	12	57	0	.	.
SMPD3	55512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68395639	68395639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_018667	exon8	c.G1733A	p.R578H	TCCCTGCGGCCCT	.	66	4	67	0	.	.
PEX16	9409	hgsc.bcm.edu	37	11	45939028	45939028	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004813	exon2	c.G129A	p.S43S	CTCGTGCGAATCG	.	68	3	93	0	.	.
CD96	10225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111261150	111261150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005816	exon1	c.G55T	p.V19F	CATTTTGTCAAGG	.	49	4	53	0	.	.
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	95416118	95416118	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	NR2C1,NS,carcinoma,0,1	NR2C1	NM_003297	exon14	c.G1699T	p.E567X	ACAATTCTTCAGT	.	51	7	89	0	.	0
ZNF43	7594	hgsc.bcm.edu	37	19	21991811	21991811	+	Missense_Mutation	SNP	G	G	T	rs149679417		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ZNF43,NS,carcinoma,0,2	ZNF43	NM_001256653	exon4	c.C1055A	p.T352K	TCACATGTGTAGG	.	43	3	51	1	.	0
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu	37	20	37191223	37191223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020336	exon24	c.G3580T	p.E1194X	TTCCTAGAATTTT	.	67	4	106	0	.	.
FLJ13224	0	hgsc.bcm.edu	37	12	31477808	31477808	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	CCCGCACGGGCGG	.	93	4	111	0	.	.
SLA	6503	hgsc.bcm.edu;bcgsc.ca	37	8	134062164	134062164	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_006748	exon3	c.G351A	p.V117V	TCTGGCCACACAT	.	76	4	64	0	.	.
CRKL	1399	hgsc.bcm.edu	37	22	21304043	21304043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CRKL,NS,carcinoma,0,1	CRKL	NM_005207	exon3	c.G822T	p.Q274H	TGGCCAGTGGGAA	.	52	3	85	0	.	0
TSC2	7249	hgsc.bcm.edu	37	16	2100432	2100432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TSC2_ENST00000219476,rectum,carcinoma,0,2	TSC2_ENST00000219476	NM_001114382	exon3	c.G170A	p.R57H	ACAATCGCATCCG	.	46	2	58	0	.	0
HS3ST4	9951	hgsc.bcm.edu	37	16	26147016	26147016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HS3ST4,NS,carcinoma,0,1	HS3ST4	NM_006040	exon2	c.G818A	p.R273H	CCAAGCGCATTCA	.	35	2	58	0	.	0
FOXP2	93986	hgsc.bcm.edu	37	7	114329937	114329937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	FOXP2,colon,carcinoma,0,1	FOXP2	NM_148898	exon18	c.G2179A	p.D727N	GAAGACGACAGAG	.	48	2	48	0	.	0
PDE1B	5153	hgsc.bcm.edu	37	12	54964077	54964077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PDE1B,NS,carcinoma,0,1	PDE1B	NM_000924	exon6	c.A530T	p.D177V	CAGATGACCATGC	.	11	2	13	0	.	0
GREB1L	80000	hgsc.bcm.edu	37	18	18981119	18981119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001142966	exon6	c.G541T	p.G181X	TTTTCTGGAAATT	.	66	4	76	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195515030	195515030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.G3421A	p.D1141N	AAGTGTCGGTGAC	.	52	3	96	0	.	0
AGO3	192669	hgsc.bcm.edu	37	1	36501846	36501846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	EIF2C3,NS,carcinoma,0,1	EIF2C3	NM_024852	exon14	c.G1820T	p.G607V	GTGATGGAAAGAA	.	42	2	77	0	.	0
HLA-B	3106	hgsc.bcm.edu	37	6	31323974	31323974	+	Missense_Mutation	SNP	C	C	T	rs41545114	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005514	exon3	c.G589A	p.E197K	CGTTCTCCAGGTA	.	37	7	37	0	0.001	.
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35824927	35824927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_005095	exon3	c.A487C	p.K163Q	AACAGCAAAGAGA	.	82	28	118	0	.	.
ZMAT1	84460	hgsc.bcm.edu	37	X	101153157	101153157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001011657	exon4	c.C265A	p.Q89K	GCATTTGAAAATA	.	99	4	99	0	.	.
ZBED6	100381270	hgsc.bcm.edu;bcgsc.ca	37	1	203766905	203766905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001174108	exon1	c.T255A	p.F85L	AAAGTTTAGTAAG	.	30	10	41	0	.	.
HIST1H4I	8294	hgsc.bcm.edu	37	6	27107240	27107240	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HIST1H4I_ENST00000354348,NS,lymphoid_neoplasm,0,2	HIST1H4I_ENST00000354348	NM_003495	exon1	c.C153A	p.I51I	CCTCATCTATGAG	.	37	2	60	0	.	0
CCT6P3	643180	hgsc.bcm.edu;ucsc.edu	37	7	64529883	64529883	+	RNA	SNP	C	C	T	rs55866961	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TTTCAGCTGGTTG	.	22	6	20	0	.	.
EXOC4	60412	hgsc.bcm.edu	37	7	133580353	133580353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	EXOC4,colon,carcinoma,+1,1	EXOC4	NM_021807	exon12	c.G1736T	p.S579I	TCCAGAGCACAAT	.	42	2	49	0	.	+1
MIRLET7BHG	400931	hgsc.bcm.edu	37	22	46494461	46494461	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	AATGTTGATGAAA	.	43	7	43	0	.	.
ENTPD1	953	hgsc.bcm.edu	37	10	97599460	97599460	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ENTPD1,NS,carcinoma,0,1	ENTPD1	NM_001164178	exon3	c.C193T	p.L65L	ATTGTGCTGGATG	.	50	2	66	0	.	0
SOGA2	23255	hgsc.bcm.edu	37	18	8718506	8718506	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CCDC165,NS,malignant_melanoma,0,1	CCDC165	NM_015210	exon3	c.C58A	p.R20R	GAACTTCGGCGAG	.	32	2	58	0	.	0
SETD8	387893	hgsc.bcm.edu	37	12	123879692	123879692	+	Missense_Mutation	SNP	C	C	A	rs371558123	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020382	exon4	c.C388A	p.Q130K	CCAAACCAAAAAT	.	79	4	126	0	.	.
TMC1	117531	hgsc.bcm.edu	37	9	75387387	75387387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TMC1,NS,carcinoma,0,1	TMC1	NM_138691	exon13	c.G800A	p.G267E	CAATTGGATGGAT	.	47	2	71	0	.	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	133816130	133816130	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_016018	exon7	c.C574T	p.R192X	AAACCTCGAACCA	.	50	11	58	0	.	.
MLL3	58508	hgsc.bcm.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	88	5	109	2	.	0
ROS1	6098	hgsc.bcm.edu	37	6	117715380	117715380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ROS1_ENST00000368508,caecum,carcinoma,+1,1	ROS1_ENST00000368508	NM_002944	exon10	c.C1109A	p.S370Y	ATAGAAGAAATTA	.	48	2	67	0	.	+1
C3orf52	79669	hgsc.bcm.edu	37	3	111835806	111835806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	C3orf52_ENST00000431717,NS,carcinoma,0,1	C3orf52_ENST00000431717	NM_001171747	exon4	c.C714A	p.F238L	TTGTTTCGTTTTG	.	17	2	33	0	.	0
NLRP8	126205	hgsc.bcm.edu	37	19	56477640	56477640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_176811	exon5	c.C2275T	p.Q759X	GGGAACCAGCATC	.	88	4	87	0	.	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237777618	237777618	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001035	exon37	c.G5190A	p.T1730T	CATGACGGAGGAG	.	30	8	37	0	.	.
SH3BP5L	80851	hgsc.bcm.edu	37	1	249119038	249119038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	SH3BP5L,NS,carcinoma,0,1	SH3BP5L	NM_030645	exon2	c.G97A	p.A33T	CTTCTGCGACTGG	.	34	2	41	0	.	0
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	49	20	51	0	.	0
CASKIN1	57524	hgsc.bcm.edu	37	16	2239059	2239059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CASKIN1_ENST00000382453,NS,carcinoma,0,2	CASKIN1_ENST00000382453	NM_020764	exon6	c.G586A	p.A196T	TAGCTGCGAGGTG	.	44	2	68	0	.	0
F5	2153	hgsc.bcm.edu	37	1	169500257	169500257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	F5,NS,carcinoma,0,1	F5	NM_000130	exon15	c.C4975A	p.R1659S	TAAAACGAACCTA	.	47	2	43	0	.	0
ADAM28	10863	hgsc.bcm.edu	37	8	24199122	24199122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ADAM28,NS,carcinoma,0,1	ADAM28	NM_014265	exon16	c.G1682T	p.C561F	CCATGTGTGGGAA	.	31	2	71	0	.	0
SDHA	6389	hgsc.bcm.edu	37	5	228322	228322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004168	exon6	c.A644G	p.Y215C	CCAGCTATTTTGT	.	91	4	115	0	.	.
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201286846	201286846	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001005337	exon5	c.C993T	p.I331I	TGGGATCCGCGAG	.	45	5	45	0	.	.
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140048015	140048015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_017706	exon3	c.C308T	p.S103F	CTGTCTCCAAGGA	.	44	8	60	0	.	.
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	18924875	18924875	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000292	exon24	c.C2655T	p.I885I	AATGCTGATGTCC	.	80	7	94	0	.	.
F9	2158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138642998	138642998	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000133	exon7	c.A822G	p.K274K	TGTTAAAATTACA	.	136	15	163	0	.	.
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	17164817	17164817	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001081	exon6	c.T570C	p.C190C	ATTAACACATGTG	.	12	4	16	0	.	.
RGS7	6000	hgsc.bcm.edu	37	1	240979680	240979680	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002924	exon11	c.C720T	p.H240H	AGGACTGTGACTT	.	100	4	115	0	.	.
GPRASP1	9737	hgsc.bcm.edu;bcgsc.ca	37	X	101910213	101910213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001099411	exon3	c.A1372G	p.R458G	AGACCAAGGACTG	.	65	4	81	0	.	.
MYBPC3	4607	hgsc.bcm.edu;bcgsc.ca	37	11	47360898	47360898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000256	exon21	c.G2125A	p.D709N	ACTCATCGCTGTC	.	50	4	66	0	.	.
GREB1	9687	hgsc.bcm.edu	37	2	11720942	11720942	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	GREB1_ENST00000381486,caecum,carcinoma,0,3	GREB1_ENST00000381486	NM_148903	exon7	c.G885T	p.P295P	CCTGCCGCGACCA	.	53	3	56	0	.	0
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42294007	42294007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_014233	exon3	c.G124T	p.D42Y	AGCTGTCATTGGA	.	47	12	61	0	.	.
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171535854	171535854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_015172	exon22	c.C6424A	p.P2142T	GAGAAACCAAGCC	.	63	15	83	0	.	.
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33795931	33795931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	RYR3,NS,carcinoma,0,1	RYR3	NM_001243996	exon3	c.G271A	p.G91S	AATGGCGGCGAAG	.	57	13	88	0	.	0
NUP205	23165	hgsc.bcm.edu;bcgsc.ca	37	7	135286256	135286256	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_015135	exon17	c.2512+1G>T	.	TTCCTGGTATATG	.	54	4	68	0	.	.
POLE	5426	hgsc.bcm.edu	37	12	133244235	133244235	+	Splice_Site	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	POLE,NS,carcinoma,0,1	POLE	NM_006231	exon21	c.2174-1G>T	.	AGTAATCTAAGCA	.	23	3	40	0	.	0
KIAA0430	9665	hgsc.bcm.edu	37	16	15706433	15706433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KIAA0430,NS,carcinoma,0,1	KIAA0430	NM_014647	exon17	c.C3455T	p.A1152V	GGCACTGCTTCTA	.	48	2	60	0	.	0
KCMF1	56888	hgsc.bcm.edu	37	2	85280314	85280314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	KCMF1_ENST00000409785,NS,carcinoma,0,1	KCMF1_ENST00000409785	NM_020122	exon7	c.G928T	p.E310X	TCCATGGAAAGCG	.	41	2	59	0	.	0
PSG6	5675	hgsc.bcm.edu	37	19	43421937	43421937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001031850	exon1	c.C8T	p.P3L	GAGAGGGGTCCCA	.	75	4	122	0	.	.
MED13L	23389	hgsc.bcm.edu	37	12	116422008	116422008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MED13L,NS,carcinoma,0,1	MED13L	NM_015335	exon20	c.C4508T	p.A1503V	ACTTGCGCATAAA	.	39	2	74	1	.	0
GABRP	2568	hgsc.bcm.edu	37	5	170222402	170222402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	GABRP,trunk,malignant_melanoma,0,1	GABRP	NM_014211	exon5	c.C431A	p.S144Y	TCTTCTCCAATGG	.	31	2	38	0	.	0
PMS2P3	5387	hgsc.bcm.edu	37	7	75155143	75155143	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TCTCAAGAAAAAA	.	28	4	39	0	.	.
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35370532	35370532	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001080418	exon1	c.G453C	p.G151G	CGCTGGCCCGGGC	.	13	4	17	0	.	.
CHD4	1108	hgsc.bcm.edu	37	12	6680126	6680126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	CHD4_ENST00000357008,bladder,carcinoma,0,3	CHD4_ENST00000357008	NM_001273	exon39	c.G5630A	p.R1877Q	GGAATTCGGGCAA	.	30	2	43	0	.	0
ZNF385D	79750	hgsc.bcm.edu	37	3	21462759	21462759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_024697	exon8	c.G1135T	p.A379S	CAGGAGCTGGCCG	.	51	4	98	0	.	.
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97217620	97217620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_212481	exon7	c.C1355T	p.A452V	AGGGTGCTGCCCA	.	16	4	20	0	.	.
PCSK9	255738	hgsc.bcm.edu	37	1	55529044	55529044	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_174936	exon12	c.G1866T	p.V622V	GCAGGTGACCGTG	.	83	4	117	0	.	.
PRPS1	5631	hgsc.bcm.edu	37	X	106885652	106885652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002764	exon4	c.G462T	p.W154C	AAAGTGGATAAGG	.	90	5	95	0	.	.
ND4	0	hgsc.bcm.edu	37	MT	11192	11192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	ENST00000361381	exon1	c.G433A	p.A145T	CTGAACGCAGGCA	.	20	5	6	0	.	.
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48608557	48608557	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_000094	exon93	c.C7141G	p.P2381A	CAGGAGGCCCAGG	.	28	8	46	0	.	.
SLC35F5	80255	hgsc.bcm.edu	37	2	114500277	114500277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	SLC35F5,colon,carcinoma,+2,12	SLC35F5	NM_025181	exon7	c.T742G	p.C248G	CAAAGCAAAAAAA	.	69	3	52	0	.	+2
HSPA2	3306	hgsc.bcm.edu	37	14	65008064	65008064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	HSPA2,NS,carcinoma,0,1	HSPA2	NM_021979	exon1	c.C497T	p.T166M	CCATCACGGGGCT	.	29	2	52	1	.	0
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75650880	75650880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020932	exon1	c.A2557T	p.R853W	CATGCCAGGGAGT	.	38	10	64	0	.	.
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170103393	170103393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_004525	exon21	c.G3012T	p.M1004I	CAGCCTCATTCCA	.	32	7	39	0	.	.
CASP8AP2	9994	hgsc.bcm.edu	37	6	90575684	90575684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001137667	exon8	c.C2675A	p.P892Q	TTTTACCAAATTC	.	77	4	66	0	.	.
FERD3L	222894	hgsc.bcm.edu	37	7	19184746	19184746	+	Silent	SNP	C	C	T	rs199985178		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.,2	.	NM_152898	exon1	c.G240A	p.E80E	GCGCTCCTCTTCC	.	13	2	14	0	.	63
TRIM39	56658	hgsc.bcm.edu	37	6	30297399	30297399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TRIM39_ENST00000376656,colon,carcinoma,+1,1	TRIM39_ENST00000376656	NM_172016	exon3	c.G305T	p.R102L	AGATCCGGGATGA	.	30	3	36	1	.	+1
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40344493	40344493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_001142623	exon5	c.G655T	p.E219X	CTAGCTCTTCACC	.	36	10	51	0	.	.
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72024647	72024647	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_144982	exon17	c.C3558T	p.C1186C	AAAACGGCAGAAA	.	39	4	47	0	.	.
HMCN1	83872	hgsc.bcm.edu	37	1	186064631	186064631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_031935	exon68	c.G10551T	p.K3517N	CAGCAAGCACTTT	.	70	3	76	0	.	.
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu	37	17	40823452	40823452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PLEKHH3,colon,carcinoma,0,1	PLEKHH3	NM_024927	exon8	c.C1201T	p.R401W	CCTGCCGTTGGCT	.	52	3	90	0	.	0
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111636540	111636540	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002912	exon27	c.A8396C	p.K2799T	CCAATCTTAAAAG	.	60	10	69	0	.	.
RBBP8NL	140893	hgsc.bcm.edu	37	20	60985985	60985985	+	Silent	SNP	G	G	A	rs151053015		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	C20orf151,lower_third,carcinoma,0,1	C20orf151	NM_080833	exon14	c.C1944T	p.D648D	CTCGGCGTCCCTT	.	48	2	80	0	0.000	0
PGBD1	84547	hgsc.bcm.edu	37	6	28251740	28251740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PGBD1,right_lower_lobe,carcinoma,0,1	PGBD1	NM_001184743	exon2	c.C150A	p.F50L	GCACTTCTGCTAC	.	13	2	27	0	.	0
C4orf29	80167	hgsc.bcm.edu	37	4	128904141	128904141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	C4orf29_ENST00000398965,NS,carcinoma,0,2	C4orf29_ENST00000398965	NM_001039717	exon2	c.C31T	p.R11W	CTATACCGGAGAC	.	42	2	57	1	.	0
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	154863304	154863304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_024012	exon1	c.G695T	p.G232V	GCGTGGGCTCCAG	.	29	12	54	0	.	.
PCTP	58488	hgsc.bcm.edu	37	17	53852193	53852193	+	Silent	SNP	G	G	T	rs371579881	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	PCTP,NS,malignant_melanoma,+1,1	PCTP	NM_021213	exon5	c.G552T	p.P184P	AATTCCGTCCTGG	.	66	4	78	0	.	+1
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127610310	127610310	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	FBN2_ENST00000508053,NS,carcinoma,0,6	FBN2_ENST00000508053	NM_001999	exon60	c.T7660G	p.F2554V	AGGTAAACCCCCC	.	54	7	77	0	.	0
TUFT1	7286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151553512	151553512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_020127	exon12	c.C1103T	p.P368L	AGAACCCGGGCAG	.	34	14	44	0	.	.
TSC22D2	9819	hgsc.bcm.edu	37	3	150176395	150176395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	TSC22D2,NS,malignant_melanoma,0,1	TSC22D2	NM_014779	exon4	c.C2315A	p.P772Q	AACCTCCACAGCA	.	36	2	40	0	.	0
PFDN1	5201	hgsc.bcm.edu	37	5	139680104	139680104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_002622	exon2	c.C97A	p.Q33K	CAATCTGTATGTC	.	56	4	70	0	.	.
NXF5	55998	hgsc.bcm.edu	37	X	101096287	101096287	+	Missense_Mutation	SNP	G	G	A	rs199849270	bycluster	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_032946	exon7	c.C337T	p.R113W	TGTACCGTTTGTT	.	161	18	215	0	.	.
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ZC3H11A,NS,carcinoma,0,4	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	AGCTATCAGAAAT	.	218	4	251	1	.	71
KCNK4	50801	broad.mit.edu	37	11	64060511	64060511	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	KCNK4	NM_033310	exon2	c.G21A	p.L7L	GCTCCTGGCCCTG	.	68	5	77	0	.	22
.	0	broad.mit.edu	37	14	19857017	19857017	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TATACTCTCAGCA	.	67	16	84	0	.	.
EMC4	51234	broad.mit.edu	37	15	34520740	34520740	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	NM_016454	exon4	c.C466T	p.L156L	ATGGGACTGTTAC	.	40	3	100	0	.	.
ABCC6	368	broad.mit.edu	37	16	16315466	16315466	+	Silent	SNP	G	G	T	rs71390963	alternate_allele	TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ABCC6	NM_001079528	exon2	c.C259A	p.R87R	TCCCCCGAACATT	.	91	3	107	0	CAC|0.500;GAA|0.500	110
SLC6A10P	0	broad.mit.edu	37	16	32895150	32895164	+	RNA	DEL	CCACTGACTCGGGCC	CCACTGACTCGGGCC	-	rs113443782		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	GGGTGGCCACTGA	.	51	2	63	0	CCACTGACTCGGGCC|0.500;-|0.500	.
ZNF18	7566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11896084	11896084	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ZNF18	NM_144680	exon4	c.C63T	p.S21S	GAACTGGGAGTCC	.	31	4	63	1	.	42
LOC100128675	0	broad.mit.edu	37	19	35566856	35566856	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	AACCCACAGGGGC	.	26	4	47	0	.	.
RUVBL2	10856	broad.mit.edu;bcgsc.ca	37	19	49518928	49518928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	RUVBL2	NM_006666	exon14	c.C1351A	p.L451I	GCCTTCCTCTTCA	.	18	3	28	0	.	31
SLC1A6	6511	broad.mit.edu;bcgsc.ca	37	19	15063766	15063766	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	SLC1A6	NM_005071	exon8	c.G1473A	p.T491T	GATGAGCGTGATG	.	7	3	28	0	.	111
MAP4K3	8491	broad.mit.edu	37	2	39564669	39564669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	MAP4K3	NM_001270425	exon5	c.C364A	p.Q122K	TTACCTGCAGTGT	.	70	3	88	0	.	109
EFCAB6	64800	broad.mit.edu	37	22	43985975	43985975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	EFCAB6	NM_022785	exon24	c.A3011G	p.E1004G	GTCAGCTCCCCTT	.	52	3	65	0	.	177
LOC96610	0	broad.mit.edu	37	22	22663052	22663052	+	RNA	SNP	T	T	C	rs4043415		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TTGGGGTTCCTGT	.	256	6	226	0	.	.
UROC1	131669	broad.mit.edu	37	3	126208213	126208213	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	UROC1	NM_001165974	exon18	c.G1794A	p.P598P	GACCACCGGCGCC	.	13	3	27	0	.	150
GTF2H2B	0	broad.mit.edu	37	5	69719461	69719461	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	CTTTCCTTTTTTT	.	21	2	23	0	.	.
LARP1	23367	broad.mit.edu	37	5	154190824	154190824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	LARP1	NM_015315	exon17	c.T2630C	p.L877P	AGTGCCTTTTTCG	.	55	3	56	0	.	187
DNAH8	1769	broad.mit.edu	37	6	38890868	38890868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	DNAH8	NM_001206927	exon72	c.A10697G	p.K3566R	GGAAAAAGATGCA	.	66	3	77	1	.	1239
.	0	broad.mit.edu	37	6	72084709	72084712	+	RNA	DEL	ATAA	ATAA	-	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	AAATATATAAATA	.	9	3	16	0	.	.
KCP	375616	broad.mit.edu	37	7	128546870	128546874	+	RNA	DEL	AAAGT	AAAGT	-	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	KCP	.	.	.	.	CCATTAAAAGTCA	.	35	6	31	0	.	16
.	0	broad.mit.edu	37	7	124985954	124985954	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TTGTGCTTTGGGA	.	6	2	7	0	.	.
ADCY8	114	broad.mit.edu	37	8	131812682	131812682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ADCY8,NS,carcinoma,+1,1	ADCY8	NM_001115	exon15	c.A3050G	p.D1017G	TCGAAGTCAGCAA	.	89	3	92	0	.	291
C9orf50	375759	broad.mit.edu	37	9	132377802	132377802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	C9orf50	NM_199350	exon4	c.C841A	p.Q281K	TGTCCTGCAGGGT	.	48	3	69	0	.	25
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	MLLT3,NS,carcinoma,0,8	MLLT3	NM_004529	exon5	c.C465T	p.S155S	GCTACTGCTGCTG	.	87	5	106	1	.	125
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	X	138899055	138899055	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ATP11C	NM_001010986	exon4	c.T294C	p.L98L	AAAGAAAAGTGGA	.	190	6	232	0	.	319
BRWD3	254065	broad.mit.edu;bcgsc.ca	37	X	79946606	79946606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	BRWD3	NM_153252	exon31	c.C3548A	p.A1183D	GGATAAGCAACTA	.	138	7	225	2	.	251
FN1	2335	ucsc.edu;bcgsc.ca	37	2	216271210	216271210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	FN1	NM_212476	exon19	c.C2737A	p.L913M	ACTGCAGGTCCCT	.	27	4	34	0	.	521
OR13H1	347468	ucsc.edu	37	X	130678378	130678378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	OR13H1	NM_001004486	exon1	c.G331T	p.E111X	ACAGCAGAGTGCC	.	35	4	38	0	.	41
PLEKHM2	23207	bcgsc.ca	37	1	16056369	16056369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PLEKHM2	NM_015164	exon14	c.C2153T	p.A718V	CGGATGCCACCAT	.	23	3	53	0	.	94
RAD54L	8438	bcgsc.ca	37	1	46733249	46733249	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	RAD54L	NM_003579	exon9	c.G1010T	p.S337I	ATTTCAGCTTGGT	.	54	5	54	0	.	64
.	0	bcgsc.ca	37	2	229216901	229216901	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	GAGCTGGCAGCCA	.	26	10	42	0	.	.
FILIP1L	11259	bcgsc.ca	37	3	99568935	99568935	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	FILIP1L	NM_182909	exon5	c.C1585A	p.Q529K	TATTTTGCTCCAC	.	21	3	34	0	.	154
.	0	bcgsc.ca	37	4	135967761	135967761	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	ATTGCCGTTCTGG	.	26	6	72	0	.	.
STOX2	56977	bcgsc.ca	37	4	184931278	184931278	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	STOX2	NM_020225	exon3	c.G1287T	p.V429V	AAACGTGCTCGAG	.	19	3	52	0	.	142
DHX16	8449	bcgsc.ca	37	6	30638651	30638651	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	DHX16	NM_003587	exon3	c.G525A	p.L175L	CTCCTCCAGGTCC	.	22	3	27	0	.	119
.	0	bcgsc.ca	37	6	122001472	122001472	+	RNA	SNP	C	T	T	rs200498403		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TTTTTTCTTTTTT	.	42	4	78	1	.	.
.	0	bcgsc.ca	37	6	138028222	138028222	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	GAACATGTGAAGT	.	26	4	41	0	.	.
PAXIP1	22976	bcgsc.ca	37	7	154753289	154753289	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PAXIP1	NM_007349	exon11	c.G2197A	p.A733T	ATTTGGCACCTGC	.	66	4	60	0	.	150
PHYHD1	254295	bcgsc.ca	37	9	131704026	131704026	+	Silent	SNP	C	T	T	rs141466531		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	PHYHD1	NM_174933	exon12	c.C888T	p.P296P	CCCTCCCGGGTGA	.	15	3	30	0	C|1.000;T|0.000	29
ATG2A	23130	bcgsc.ca	37	11	64676552	64676552	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ATG2A	NM_015104	exon16	c.C2275A	p.L759M	GCTCCAGTTCCTC	.	51	5	84	0	.	133
MRPL48	51642	bcgsc.ca	37	11	73536794	73536794	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	MRPL48	NM_016055	exon4	c.C154T	p.P52S	ACAAAGCCCACCC	.	61	4	63	0	.	16
.	0	bcgsc.ca	37	12	75057793	75057793	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	AGGAAGCTGCTTC	.	14	3	20	0	.	.
.	0	bcgsc.ca	37	14	19443807	19443807	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	CTCACCATCTTGA	.	19	5	24	0	.	.
.	0	bcgsc.ca	37	14	22932181	22932181	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	GACTTTGAAGTGA	.	54	4	42	0	.	.
ZNF821	55565	bcgsc.ca	37	16	71894006	71894006	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	ZNF821	NM_001201553	exon7	c.A1154G	p.Q385R	GGCAGCTGGAAGA	.	17	3	31	0	.	25
SPATA20	64847	bcgsc.ca	37	17	48625960	48625960	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	SPATA20	NM_022827	exon4	c.C342A	p.N114K	GGAAAACAAGCCG	.	55	4	74	0	.	59
LPHN1	22859	bcgsc.ca	37	19	14267774	14267774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	LPHN1	NM_001008701	exon16	c.G2944A	p.A982T	TGGCAGCCGCGAT	.	46	4	63	0	.	107
ZNF546	339327	bcgsc.ca	37	19	40520472	40520472	+	Missense_Mutation	SNP	G	A	A	rs199852460		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	ZNF546,NS,carcinoma,0,2	ZNF546	NM_178544	exon7	c.G1295A	p.R432H	GACATCGTAGAAT	.	43	4	51	0	.	93
.	642460	bcgsc.ca	37	21	14768303	14768303	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2G-01A-11D-A417-09	TCGA-W5-AA2G-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47619547-f613-400f-9d49-51447acdff69	41c0feef-88a9-4742-9c2b-15c3851dba8d	.	.	.	.	.	.	TTGCCATTTGTTG	.	43	6	56	0	.	.