Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq MAGEA1 4100 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 152482527 152482527 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004988 exon3 c.485delC p.A162fs GGTCTGCTTCCTT . 71 24 63 0 . . CLIP4 79745 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 29366790 29366792 + In_Frame_Del DEL TGT TGT - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 TGT TGT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_024692 exon7 c.863_865del p.288_289del GGATCGTGTTGTT . 61 16 35 0 . . IBSP 3381 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 88732730 88732732 + In_Frame_Del DEL GGA GGA - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 GGA GGA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da IBSP,NS,carcinoma,0,1 IBSP NM_004967 exon7 c.621_623del p.207_208del GTCACTGGAGCCA . 54 18 39 0 . 0 LINC00304 283860 hgsc.bcm.edu 37 16 89226805 89226873 + RNA DEL CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GAAGACCCCCCGC . 139 0 95 0 . . MAGEA1 4100 hgsc.bcm.edu 37 X 152482527 152482528 + Frame_Shift_Del DEL CT CT - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 CT CT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004988 exon3 c.484_485del p.162_162del GGTCTGCTTCCTT . 71 0 63 0 . . tRNA-Cys 0 hgsc.bcm.edu 37 MT 5801 5801 + RNA SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTGCAATTCAATA . 654 593 173 0 . . DOCK9 23348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99554100 99554100 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001130049 exon13 c.G1438A p.E480K CTTTTTCAATTCT . 68 8 50 0 . . PUM1 9698 hgsc.bcm.edu 37 1 31465481 31465481 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da PUM1,NS,carcinoma,0,1 PUM1 NM_014676 exon7 c.C914A p.S305Y TTAGCAGAGTTCT . 31 2 28 0 . 0 FAM169A 26049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 74091907 74091907 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da FAM169A,NS,carcinoma,0,1 FAM169A NM_015566 exon11 c.C1208A p.A403E GGCCGTGCATCTC . 36 15 30 0 . 0 MIR548N 100302152 hgsc.bcm.edu 37 2 179367333 179367333 + RNA SNP T T A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTTTTTTAAGGGG . 93 4 54 0 . . HLA-H 3136 hgsc.bcm.edu 37 6 29855595 29855595 + RNA SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ENSG00000196306,brain,glioma,0,1 ENSG00000196306 . . . . CTGACCCAGACCT . 55 6 35 1 . 0 LRRCC1 85444 hgsc.bcm.edu 37 8 86038933 86038933 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_033402 exon9 c.G1282T p.E428X CTTGTTGAACAGC . 85 3 46 0 . . TLR1 7096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 38798332 38798332 + Missense_Mutation SNP G G C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da TLR1,NS,carcinoma,0,1 TLR1 NM_003263 exon4 c.C2121G p.C707W ATAATGGCACCAT . 99 34 56 0 . 0 HEATR2 54919 hgsc.bcm.edu 37 7 814755 814755 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da HEATR2,NS,carcinoma,0,1 HEATR2 NM_017802 exon11 c.C2195A p.S732X AAACCTCGGGCGG . 46 4 28 0 . 0 LRP1B 53353 hgsc.bcm.edu 37 2 141812690 141812690 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da LRP1B,NS,carcinoma,0,1 LRP1B NM_018557 exon10 c.G1547A p.C516Y CTTTTGCATGACC . 41 2 35 0 . 0 WDFY3 23001 hgsc.bcm.edu 37 4 85716106 85716106 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_014991 exon20 c.C3194A p.P1065H TTATGAGGGGCCA . 86 4 59 0 . . SLC18A2 6571 hgsc.bcm.edu 37 10 119003781 119003781 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SLC18A2,NS,haematopoietic_neoplasm,0,1 SLC18A2 NM_003054 exon3 c.G421T p.V141F GCCACCGTCCAGC . 37 2 20 0 . 0 WDR26 80232 hgsc.bcm.edu 37 1 224599141 224599141 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_025160 exon7 c.G1146A p.W382X AACTTGCCATATG . 79 3 62 0 . . ABCA8 10351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 66878815 66878815 + Silent SNP T T G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_007168 exon28 c.A3633C p.P1211P TCCTTCTGGTTCT . 59 6 38 0 . . WDR33 55339 hgsc.bcm.edu;broad.mit.edu 37 2 128522166 128522166 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da WDR33_ENST00000409658,NS,carcinoma,0,1 WDR33_ENST00000409658 NM_001006622 exon6 c.G862A p.A288T AAAATGCGGCAGA . 44 3 30 0 . 0 GAL3ST2 64090 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 242741335 242741335 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_022134 exon3 c.G259A p.G87S CCCGCCGGCTCAC . 48 9 17 0 . . SLC12A6 9990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 34628712 34628712 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_133647 exon1 c.G170A p.S57N GGCTCACTCCGGC . 77 29 32 0 . . MYH10 4628 hgsc.bcm.edu 37 17 8408136 8408136 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da MYH10,NS,carcinoma,0,1 MYH10 NM_001256012 exon28 c.G3475A p.E1159K CGGATTCAAAGTC . 30 2 29 0 . 0 IQGAP2 10788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 75969392 75969392 + Missense_Mutation SNP A A T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_006633 exon25 c.A3187T p.I1063F TCTATCATTTCTT . 60 20 44 0 . . USP48 84196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 22063114 22063114 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001032730 exon9 c.G996A p.G332G GTAGGACCCACCT . 40 17 49 0 . . TGM1 7051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24729730 24729730 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_000359 exon4 c.C683A p.S228X GCGTCTGATTGTG . 23 16 33 0 . . NCOR1 9611 hgsc.bcm.edu 37 17 15971432 15971432 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001190440 exon31 c.C4565A p.T1522K GAAATTGTAACTG . 84 4 54 0 . . GLRA3 8001 hgsc.bcm.edu 37 4 175580272 175580272 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da GLRA3,colon,carcinoma,0,1 GLRA3 NM_001042543 exon8 c.C1004T p.A335V ACAGCTGCATACT . 38 2 34 0 . 0 UBTF 7343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 42293340 42293340 + Silent SNP T T G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_014233 exon4 c.A252C p.T84T TGTCAATGTACGG . 57 7 31 0 . . GGTLC1 92086 hgsc.bcm.edu 37 20 23967157 23967157 + Missense_Mutation SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da GGTLC1,NS,carcinoma,0,12 GGTLC1 NM_178311 exon2 c.T92C p.M31T TCCGGCATGTAGA . 132 6 81 2 . 0 FAM127A 8933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 134166535 134166535 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001078171 exon1 c.C122A p.P41Q GACTCCCGGAGTT . 101 28 87 0 . . NELFCD 51497 hgsc.bcm.edu;ucsc.edu 37 20 57568731 57568731 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_198976 exon13 c.G1547T p.G516V GTCGAGGTTATGT . 39 4 24 0 . . MAST4 375449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 66391445 66391445 + Missense_Mutation SNP C C G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001164664 exon7 c.C854G p.S285W GCTGGTCGTTGGC . 75 33 44 0 . . SLC25A32 81034 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 104413805 104413805 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_030780 exon6 c.C751A p.R251S GAAGACGAGCTCT . 93 4 38 0 . . SCAI 286205 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 127762184 127762184 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_173690 exon14 c.C1299A p.H433Q TTCCTTGTGGGAC . 81 4 52 0 . . DDR1 780 hgsc.bcm.edu 37 6 30858814 30858814 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001202523 exon5 c.C536T p.A179V TGGTTGCCCGACT . 62 4 39 0 . . HSPG2 3339 hgsc.bcm.edu 37 1 22214554 22214554 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da HSPG2,NS,malignant_melanoma,0,2 HSPG2 NM_005529 exon7 c.C580T p.Q194X GGAACTGGGGCAC . 30 2 29 0 . 0 MUC4 4585 hgsc.bcm.edu 37 3 195511212 195511212 + Missense_Mutation SNP G G C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da MUC4_ENST00000463781,NS,carcinoma,0,2 MUC4_ENST00000463781 NM_018406 exon2 c.C7239G p.H2413Q GGTGGCGTGACCT . 169 7 125 0 . 0 RIMS1 22999 hgsc.bcm.edu 37 6 72892048 72892048 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da RIMS1,colon,carcinoma,0,1 RIMS1 NM_014989 exon6 c.C874T p.R292C CGGAAACGCGTGC . 38 2 35 0 . 0 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 198710997 198710997 + Splice_Site SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_080921 exon21 c.1921-1G>T . TGACTAGAAAAAA . 30 13 16 0 . . PAPPA2 60676 hgsc.bcm.edu 37 1 176759060 176759060 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_020318 exon18 c.G4831T p.G1611C ACCAATGGCTTCA . 88 4 59 0 . . RIOK2 55781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 96503500 96503500 + Silent SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001159749 exon8 c.G1068T p.R356R ACAGTTCCGTTCA . 35 17 31 0 . . LRP12 29967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 105510177 105510177 + Silent SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_013437 exon5 c.C603T p.A201A TTCTTTGGCACAG . 97 23 46 0 . . SH2D3A 10045 hgsc.bcm.edu 37 19 6755188 6755188 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SH2D3A,NS,carcinoma,0,1 SH2D3A NM_005490 exon5 c.A635G p.K212R GGGGGCTTCGTTG . 79 3 60 0 . 0 BLK 640 hgsc.bcm.edu 37 8 11415529 11415529 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da BLK,NS,carcinoma,+2,1 BLK NM_001715 exon10 c.G1011T p.L337L AAGGCTGATTGAC . 22 2 16 0 . +2 AHNAK 79026 hgsc.bcm.edu 37 11 62300279 62300279 + Missense_Mutation SNP T T A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da AHNAK,NS,carcinoma,0,1 AHNAK NM_001620 exon5 c.A1610T p.K537I GAGCCTTTAAGTG . 26 2 12 0 . 0 ZNF157 7712 hgsc.bcm.edu 37 X 47272743 47272743 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_003446 exon4 c.G1271T p.S424I TCTTCAGTATGAA . 79 4 43 0 . . NTRK3 4916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 88678415 88678415 + Missense_Mutation SNP C C G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001243101 exon10 c.G1121C p.G374A TAGTTGCCATTGT . 103 34 43 0 . . BCL3 602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45262071 45262071 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_005178 exon8 c.G1150T p.E384X TCCCCCGAGAGCA . 20 8 14 0 . . PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144991673 144991673 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da PLEC_ENST00000436759,NS,carcinoma,0,3 PLEC_ENST00000436759 NM_201380 exon32 c.G12727T p.E4243X AACGCTCCATCAG . 60 13 29 0 . 0 CDH26 60437 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 58564141 58564141 + Silent SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_177980 exon9 c.T1206C p.I402I CTTCATTGTCAAT . 100 34 60 0 . . CHADL 150356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41633412 41633412 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_138481 exon3 c.A1664G p.N555S ATGCGGTTTCCAC . 103 34 65 0 . . HNRNPM 4670 hgsc.bcm.edu 37 19 8528546 8528546 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da HNRNPM,caecum,carcinoma,0,1 HNRNPM NM_031203 exon5 c.C414T p.S138S TCTGAGCGGAAGA . 50 2 33 0 . 0 HRH3 11255 hgsc.bcm.edu;broad.mit.edu 37 20 60791534 60791534 + Missense_Mutation SNP G G A rs374571202 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_007232 exon3 c.C866T p.A289V AGGGTCGCCTCCC . 16 7 14 0 . . RALGAPA1 253959 hgsc.bcm.edu 37 14 36123575 36123575 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_194301 exon29 c.C4087A p.Q1363K TTACTTGAATAAT . 48 4 22 0 . . CSRP3 8048 hgsc.bcm.edu 37 11 19206570 19206570 + Missense_Mutation SNP C C T rs377066670 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da CSRP3,NS,malignant_melanoma,0,1 CSRP3 NM_003476 exon6 c.G437A p.R146H GCACAGCGGAAAC . 68 3 44 1 . 0 C1orf94 84970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 34663014 34663014 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001134734 exon2 c.G509A p.S170N CAGGCAGTAATGA . 29 13 23 0 . . RNU6-76 100873777 hgsc.bcm.edu 37 16 33546482 33546482 + RNA SNP G G C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TACACTGTAGAAA . 52 16 29 0 . . ZNF527 84503 hgsc.bcm.edu 37 19 37879856 37879856 + Missense_Mutation SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da .,1 . NM_032453 exon5 c.A905G p.Y302C AACCATATGCATG . 40 3 30 1 . 78 CFTR 1080 hgsc.bcm.edu 37 7 117232262 117232262 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da CFTR,NS,carcinoma,0,1 CFTR NM_000492 exon14 c.G2041T p.E681X TGGACAGAAACAA . 40 2 25 0 . 0 GRM3 2913 hgsc.bcm.edu 37 7 86394780 86394780 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da GRM3,NS,carcinoma,-2,1 GRM3 NM_000840 exon2 c.G319T p.E107X GCATTGGAGCAAT . 43 2 31 0 . -2 KTI12 112970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 52498812 52498812 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_138417 exon1 c.C622A p.L208I CCAGGAGTTCGGG . 88 27 63 0 . . SRPX2 27286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 99921900 99921900 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_014467 exon8 c.C931A p.Q311K AGCCGCCAGTGGT . 60 27 44 0 . . RAB44 401258 hgsc.bcm.edu 37 6 36690143 36690143 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001257357 exon9 c.C2232T p.G744G AAGGGGCTCTCCT . 34 10 17 0 . . GRM5 2915 hgsc.bcm.edu;bcgsc.ca 37 11 88323785 88323785 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_000842 exon7 c.C1674A p.P558P ATCAGTGGGCCAA . 51 4 35 0 . . PPFIBP1 8496 hgsc.bcm.edu 37 12 27832995 27832995 + Splice_Site SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001198915 exon18 c.1454+1G>T . TAACAGGTAAGAA . 87 4 62 0 . . CPVL 54504 hgsc.bcm.edu 37 7 29111505 29111505 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_019029 exon9 c.G748A p.A250T ATTCTGCATAGCC . 98 3 55 0 . . DNAJA3 9093 hgsc.bcm.edu 37 16 4484495 4484495 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001135110 exon2 c.G322T p.E108X CAGAAAGAGATCA . 62 4 48 0 . . EPHA7 2045 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 94068073 94068073 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004440 exon4 c.C889T p.P297S GAGTTGGACAACG . 21 9 27 0 . . RYR1 6261 hgsc.bcm.edu 37 19 39062862 39062862 + Silent SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da RYR1,NS,carcinoma,0,2 RYR1 NM_000540 exon95 c.G13950A p.L4650L CCTCCTGCATACA . 39 2 32 0 . 0 TMEM59 9528 hgsc.bcm.edu 37 1 54512947 54512947 + Silent SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004872 exon2 c.T288C p.C96C AGATTCACATTCC . 69 4 49 0 . . UBR1 197131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 43281074 43281074 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_174916 exon35 c.G3940T p.D1314Y GAGGATCCCTTTC . 78 36 45 0 . . ROR2 4920 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 94487167 94487167 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004560 exon9 c.G1609A p.V537I GGCAGACGACGTT . 9 7 19 0 . . RAB11B 9230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8467101 8467101 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004218 exon3 c.G368A p.G123D TGGTGGGCAACAA . 25 13 11 0 . . POLA1 5422 hgsc.bcm.edu 37 X 24741359 24741359 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_016937 exon11 c.C1157T p.T386M AGCGAACGCTTTA . 91 4 51 0 . . TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 78498091 78498091 + Silent SNP G G A rs376356209 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001098816 exon16 c.C2217T p.C739C CCCTACGCACACG . 34 12 33 0 . . PDE4A 5141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10568639 10568639 + Missense_Mutation SNP C C T rs200742358 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001111307 exon8 c.C962T p.P321L CCCAGCCGCCCCC . 59 22 37 0 . . SCG5 6447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 32988766 32988766 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001144757 exon6 c.A595T p.K199X GCAAAGAAGTCTG . 43 20 39 0 . . APP 351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 27277339 27277339 + Missense_Mutation SNP G G C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_000484 exon15 c.C1960G p.P654A TACCTGGTCGAGT . 25 13 32 0 . . SUPT20H 55578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 37595675 37595675 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_017569 exon21 c.C1729T p.P577S CTGCAGGAGTTAT . 22 15 31 0 . . FAM47C 442444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 37028705 37028705 + Missense_Mutation SNP A A T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001013736 exon1 c.A2222T p.E741V GCCCAGAGCCTCC . 219 14 149 0 . . GUCY1A3 2982 hgsc.bcm.edu 37 4 156632290 156632290 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da GUCY1A3,scalp,carcinoma,0,1 GUCY1A3 NM_001130687 exon6 c.G973T p.E325X TACTTTGAAATTC . 50 2 42 0 . 0 NBPF22P 285622 hgsc.bcm.edu 37 5 85580175 85580175 + RNA SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CAGAGTGTGAAGA . 58 19 36 0 . . IRX1 79192 hgsc.bcm.edu 37 5 3599509 3599509 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da .,1 . NM_024337 exon2 c.C447T p.H149H CGAGCACCGCAAG . 39 2 44 0 . 106 MYH15 22989 hgsc.bcm.edu;bcgsc.ca 37 3 108174599 108174599 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_014981 exon21 c.G2306A p.R769Q CCAAATCGGTACT . 55 4 48 0 . . LDLRAD1 388633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 54474764 54474764 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001010978 exon6 c.G509T p.C170F GAAGGACAGCGCC . 14 4 13 0 . . SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 198266713 198266713 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SF3B1,right_upper_lobe,carcinoma,0,5 SF3B1 NM_012433 exon15 c.G2219A p.G740E ACCTTTCCTCTGT . 101 31 53 0 . 0 OC90 729330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 133044207 133044207 + Silent SNP G G T rs199706785 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001080399 exon12 c.C952A p.R318R GGCACCGGGATGT . 35 11 21 0 . . PTPRF 5792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 44085499 44085499 + Missense_Mutation SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_002840 exon29 c.A5081G p.Y1694C CTGACTACATCAA . 27 10 20 0 . . PREX2 80243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 69129946 69129946 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da PREX2,NS,carcinoma,0,1 PREX2 NM_024870 exon38 c.G4700A p.R1567Q TGATGCGGAAGCA . 19 8 29 0 . 0 KRTAP1-4 728255 hgsc.bcm.edu;bcgsc.ca 37 17 39186078 39186078 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001257305 exon1 c.C253A p.P85T AGGATGGGGGTGT . 139 7 67 0 . . WDPCP 51057 hgsc.bcm.edu;bcgsc.ca 37 2 63609210 63609210 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_015910 exon11 c.G1455A p.Q485Q GCCCAGCTGTCCT . 66 4 38 0 . . KIAA0922 23240 hgsc.bcm.edu 37 4 154525248 154525248 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da KIAA0922_ENST00000409959,NS,carcinoma,0,2 KIAA0922_ENST00000409959 NM_001131007 exon25 c.G3084T p.E1028D GCGTGAGAACTGG . 46 2 38 0 . 0 ATP6V1G2-DDX39B 100532737 hgsc.bcm.edu 37 6 31498987 31498987 + RNA SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GAGAAAGGAAATT . 40 20 32 0 . . GUCY2F 2986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 108641914 108641914 + Silent SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001522 exon11 c.G2139T p.T713T AGGGGCCGTCCAC . 56 8 51 0 . . SRPR 6734 hgsc.bcm.edu 37 11 126135636 126135636 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SRPR,NS,carcinoma,0,1 SRPR NM_003139 exon9 c.C1134A p.F378L ACTGCTGAACGTC . 31 2 18 0 . 0 HOXB6 3216 hgsc.bcm.edu 37 17 46673137 46673137 + RNA SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . ATTATTGTTGTTG . 36 4 21 0 . . THPO 7066 hgsc.bcm.edu 37 3 184090419 184090419 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da THPO,colon,carcinoma,0,1 THPO NM_000460 exon6 c.C944A p.T315N ACAGGGGTGGGCA . 27 2 19 0 . 0 ZCWPW1 55063 hgsc.bcm.edu;bcgsc.ca 37 7 100000187 100000187 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_017984 exon16 c.C1423T p.P475S GAATGGGCAAAAT . 57 4 30 0 . . VGLL4 9686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 11744451 11744451 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_014667 exon2 c.G58A p.E20K GTTTTTCGTCATC . 105 70 92 0 . . SPNS1 83985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 28993745 28993745 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001142448 exon9 c.G1034A p.R345H TCAGCCGCCGGCT . 31 9 27 0 . . OR2J3 442186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 29080455 29080455 + Missense_Mutation SNP T T G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001005216 exon1 c.T788G p.L263R TGTATCTCCAGCC . 27 12 25 0 . . C1orf170 84808 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 916538 916538 + RNA SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GCCTCGGGGCTCC . 34 6 30 0 . . GLRA2 2742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 14748367 14748367 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001118885 exon10 c.C1119T p.S373S TTTTAGCGGTTAT . 89 29 75 0 . . GMPR 2766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 16290801 16290801 + Missense_Mutation SNP T T A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_006877 exon8 c.T806A p.M269K ACGGGATGAGCTC . 45 16 34 0 . . MIRLET7BHG 400931 hgsc.bcm.edu;broad.mit.edu 37 22 46501415 46501415 + RNA SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GCCGGGCACCCAG . 51 5 31 0 . . ND5 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 12736 12736 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . ENST00000361567 exon1 c.G400A p.A134T GTTACCGCTAACA . 14 13 41 0 . . HDAC4 9759 hgsc.bcm.edu;bcgsc.ca 37 2 240048352 240048352 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_006037 exon12 c.G1318A p.A440T ACTGTGCGTGGAG . 66 4 52 0 . . TOP2A 7153 hgsc.bcm.edu 37 17 38560515 38560515 + Silent SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001067 exon19 c.A2172G p.P724P CTGACCTGGTTTC . 93 4 66 0 . . ATP13A5 344905 hgsc.bcm.edu;bcgsc.ca 37 3 193081945 193081945 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_198505 exon2 c.G188A p.C63Y GGGATGCAGTTGG . 57 4 31 0 . . DLGAP2 9228 hgsc.bcm.edu 37 8 1626409 1626409 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_004745 exon9 c.T2078C p.V693A ACAGCGTCACGGC . 77 4 41 0 . . ADAM20 8748 hgsc.bcm.edu 37 14 70990328 70990328 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ADAM20,NS,carcinoma,0,1 ADAM20 NM_003814 exon2 c.C1297A p.Q433K AATATTGGGCATA . 47 2 65 0 . 0 PCDHA11 56138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140250727 140250727 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_018902 exon1 c.G2039A p.R680Q CTTCCCGGACTTT . 114 27 38 0 . . SNTG2 54221 hgsc.bcm.edu 37 2 1168797 1168797 + Silent SNP C C T rs374240224 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SNTG2,NS,neuroblastoma,0,1 SNTG2 NM_018968 exon8 c.C519T p.S173S ATCCAGCGACCAC . 86 4 54 0 . 0 PLOD2 5352 hgsc.bcm.edu 37 3 145788922 145788922 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_182943 exon19 c.C2028A p.Y676X AGGGGAGTATTTT . 109 5 78 0 . . ZSCAN2 54993 hgsc.bcm.edu 37 15 85164298 85164298 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ZSCAN2,NS,lymphoid_neoplasm,0,1 ZSCAN2 NM_181877 exon3 c.C872T p.A291V GGAGTGCCAACCT . 47 2 30 0 . 0 ZNF449 203523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 134494603 134494603 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_152695 exon5 c.C1159T p.R387X AAAAAGCGATTCA . 75 32 28 0 . . MYO5C 55930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 52517156 52517156 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_018728 exon28 c.C3388T p.H1130Y TTAAATGTTCCAG . 123 44 49 0 . . NXF4 55999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 101822176 101822176 + RNA SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CAAGAACTCTCTC . 27 12 11 0 . . CHL1 10752 hgsc.bcm.edu 37 3 383704 383704 + Silent SNP T T G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da CHL1,NS,carcinoma,0,1 CHL1 NM_001253388 exon5 c.T618G p.A206A CTTTGCTGCATTT . 39 2 29 0 . 0 UBE4B 10277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 10205034 10205034 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001105562 exon18 c.G2400A p.W800X CCAATGGAAAGAT . 51 33 55 0 . . VPS13A 23230 hgsc.bcm.edu 37 9 79890501 79890501 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001018038 exon25 c.G2600T p.R867I GAACCAGAAAGTT . 95 4 93 0 . . CLCN4 1183 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 10176631 10176631 + Splice_Site SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001830 exon9 c.1389+1G>A . ATGAAGGTAAGTG . 49 7 61 0 . . SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 45807033 45807033 + Silent SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_018079 exon7 c.C1053T p.Y351Y CCTAATGTACGAT . 76 42 41 0 . . EEFSEC 60678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 128060585 128060585 + Silent SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_021937 exon5 c.G1296A p.R432R CTCCAGGCTAGAT . 25 7 22 0 . . PSMD6-AS2 100507062 hgsc.bcm.edu 37 3 63996509 63996509 + RNA SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GACCTACTTTTAA . 96 2 76 0 . . SCLY 51540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238990809 238990809 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_016510 exon6 c.G760A p.E254K GATGTGGAGGACC . 28 10 11 0 . . HPS5 11234 hgsc.bcm.edu 37 11 18339303 18339303 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da HPS5,NS,carcinoma,0,1 HPS5 NM_181507 exon2 c.C103A p.L35I CCTTTAGACGACT . 58 3 43 0 . 0 CDC37L1 55664 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 4685133 4685133 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_017913 exon2 c.C389T p.A130V CGGATGCCATTAG . 59 5 72 0 . . MAATS1 89876 hgsc.bcm.edu 37 3 119466657 119466657 + Splice_Site SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_033364 exon16 c.2052-1G>T . TTTTTAGCCGAAC . 65 4 50 0 . . CCDC129 223075 hgsc.bcm.edu 37 7 31617535 31617535 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da LOC223075,NS,carcinoma,0,2 LOC223075 NM_001257968 exon8 c.G735T p.L245L TCTGCTGAGTGAT . 53 3 28 0 . 0 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 65300622 65300622 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001142800 exon26 c.C5138T p.P1713L TCAGTGGGTCCCA . 68 25 38 0 . . PATL1 219988 hgsc.bcm.edu 37 11 59418265 59418265 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_152716 exon13 c.C1546A p.R516R TGTCTCGAACTTG . 91 4 76 0 . . ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu 37 5 139781730 139781730 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ANKHD1-EIF4EBP3,NS,carcinoma,0,2 ANKHD1-EIF4EBP3 NM_017978 exon1 c.G178A p.G60S AGCAGCGGCGGCG . 33 3 14 0 . 0 SRA1 10011 hgsc.bcm.edu 37 5 139931630 139931630 + Silent SNP A A T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da .,1 . NM_001035235 exon3 c.T327A p.A109A CATCACAGCCTCA . 97 3 23 0 . 24 USP28 57646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113674003 113674003 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_020886 exon23 c.G2739T p.K913N TTGGTACCTTAGA . 67 36 87 0 . . SRPR 6734 hgsc.bcm.edu 37 11 126134929 126134929 + Missense_Mutation SNP G G T rs142997401 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SRPR,NS,carcinoma,0,1 SRPR NM_003139 exon11 c.C1450A p.R484S TGGTGCGGCCACC . 44 2 46 0 . 0 CDK12 51755 hgsc.bcm.edu 37 17 37665977 37665977 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_016507 exon7 c.G2629T p.D877Y CTAGCAGATTTTG . 89 4 52 0 . . MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 140995729 140995729 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_005462 exon4 c.C2539A p.P847T AGTTCCCCTGAGA . 71 22 43 0 . . GPR87 53836 hgsc.bcm.edu 37 3 151012036 151012036 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_023915 exon3 c.C998A p.T333N CTCCTGGTTCTGA . 85 4 54 0 . . ACSBG2 81616 hgsc.bcm.edu 37 19 6187825 6187825 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ACSBG2,NS,carcinoma,0,1 ACSBG2 NM_030924 exon13 c.G1896T p.E632D CTTGGAGAAGGAC . 39 2 30 0 . 0 PSMB10 5699 hgsc.bcm.edu 37 16 67968568 67968568 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da PSMB10,NS,carcinoma,0,2 PSMB10 NM_002801 exon8 c.C717A p.G239G GTAGCGGCCAGAC . 42 2 43 0 . 0 GGT8P 645367 hgsc.bcm.edu 37 2 91963899 91963899 + RNA SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GCCCTGCTGGGGA . 68 4 29 0 . . MAP9 79884 hgsc.bcm.edu 37 4 156281387 156281387 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da MAP9,NS,carcinoma,0,1 MAP9 NM_001039580 exon7 c.C983A p.T328K TCAACTGTTCTGT . 75 3 67 0 . 0 TRMT12 55039 hgsc.bcm.edu;bcgsc.ca 37 8 125464268 125464268 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_017956 exon1 c.C1100T p.T367I AAATTACCACCAA . 80 4 57 0 . . GYG2 8908 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 2799129 2799129 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_003918 exon12 c.G1381A p.E461K TCCATCGAAGAGA . 44 18 23 0 . . UNC79 57578 hgsc.bcm.edu;bcgsc.ca 37 14 94084687 94084687 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_020818 exon29 c.C3843T p.S1281S ATACAGCGAAAAA . 63 4 81 0 . . BCAN 63827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156622711 156622711 + Missense_Mutation SNP C C G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_198427 exon8 c.C1969G p.L657V ACTGCCCTCTCTA . 29 11 21 0 . . ERLEC1 27248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 54035592 54035592 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ERLEC1,NS,carcinoma,0,1 ERLEC1 NM_015701 exon9 c.C1036T p.R346C TGCTTTCGTGGGG . 93 20 64 0 . 0 ZDHHC6 64429 hgsc.bcm.edu 37 10 114200370 114200370 + Silent SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_022494 exon5 c.T603C p.A201A AAATGCAGCTAAT . 82 2 68 0 . . CCDC57 284001 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 80151670 80151670 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_198082 exon6 c.G813A p.Q271Q GGTTAGCTGCACA . 76 4 38 0 . . SCLY 51540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238990770 238990770 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_016510 exon6 c.G721A p.D241N CACACGGATGCTG . 35 12 11 0 . . RPL36A-HNRNPH2 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100646777 100646777 + Nonsense_Mutation SNP T T G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001199973 exon3 c.T252G p.Y84X TGGCTATGGTGGG . 106 27 58 0 . . CLCN5 1184 hgsc.bcm.edu 37 X 49840560 49840560 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001127898 exon7 c.G526T p.E176X AACTCTGAGCATG . 97 4 46 0 . . ELF4 2000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 129201166 129201166 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001421 exon9 c.G1522T p.G508X CTGGTCCAGCCCC . 66 19 29 0 . . LRRC52 440699 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 165513519 165513519 + RNA SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GGGTGGTTGTGGC . 107 18 67 0 . . CCDC88C 440193 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 14 91883098 91883098 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001080414 exon2 c.C145A p.Q49K TAATTTGGTTCAA . 38 4 34 0 . . APAF1 317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 99106135 99106135 + Silent SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_181861 exon21 c.T2880C p.T960T TCTGACTGAAGCT . 27 18 31 0 . . EP400 57634 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 132530051 132530051 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_015409 exon38 c.G6972T p.E2324D AGCTGAGCCTGGT . 26 4 23 0 . . SPHK2 56848 hgsc.bcm.edu 37 19 49132111 49132111 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da SPHK2,caecum,carcinoma,0,1 SPHK2 NM_020126 exon7 c.G1046T p.R349L GCGAGCGCTTCAG . 47 2 45 0 . 0 GXYLT1 283464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 42512815 42512815 + Missense_Mutation SNP C C G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_173601 exon3 c.G473C p.S158T TTAAAGCTATGAT . 100 40 60 0 . . COL6A6 131873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 130287118 130287118 + Missense_Mutation SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001102608 exon5 c.C2071A p.Q691K ATAGACCAAATGG . 72 28 41 0 . . BMPR2 659 hgsc.bcm.edu 37 2 203383553 203383553 + Silent SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001204 exon6 c.C630T p.G210G GATTGGCCGAGGT . 95 4 54 0 . . FZD1 8321 hgsc.bcm.edu 37 7 90894459 90894459 + Silent SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da .,4 . NM_003505 exon1 c.A264G p.Q88Q GCAGCAACCGCCG . 20 4 7 0 . 64 PXDNL 137902 hgsc.bcm.edu 37 8 52361599 52361599 + Missense_Mutation SNP G G T rs377262954 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da PXDNL_ENST00000356297,NS,carcinoma,0,1 PXDNL_ENST00000356297 NM_144651 exon11 c.C1329A p.D443E GTTGCCGTCAGCT . 35 3 23 0 . 0 AMBRA1 55626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 46529852 46529852 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001267782 exon11 c.A2237G p.Q746R GAGCGCTGGCGAA . 49 18 37 0 . . ZFP92 139735 hgsc.bcm.edu;broad.mit.edu 37 X 152686855 152686855 + Silent SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001136273 exon4 c.C1020A p.R340R CCGGCGCGTGCAC . 20 5 6 0 . . GLG1 2734 hgsc.bcm.edu 37 16 74496020 74496020 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da .,1 . NM_001145667 exon22 c.C3008A p.P1003H AGCTGAGGATCCA . 45 2 38 0 . 106 MAP1B 4131 hgsc.bcm.edu 37 5 71491850 71491850 + Nonsense_Mutation SNP G G T rs139604402 bycluster;alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_005909 exon5 c.G2668T p.E890X CCTGCCGAGTCCC . 42 3 34 0 . . SPATA31E1 286234 hgsc.bcm.edu 37 9 90502147 90502147 + Silent SNP C C A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da C9orf79,NS,carcinoma,0,3 C9orf79 NM_178828 exon4 c.C2745A p.T915T CCCGACCGTGAGT . 37 2 55 0 . 0 . 0 broad.mit.edu 37 11 119489814 119489814 + RNA DEL T T - rs138713709 bycluster;alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . AGTTACTTTTTTT . 6 2 5 0 . . PRB2 653247 broad.mit.edu 37 12 11546320 11546322 + In_Frame_Del DEL TTG TTG - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . PRB2 NM_006248 exon3 c.690_692del p.230_231del TGGGACTTGTTGT . 141 7 84 0 . 168 KIF7 374654 broad.mit.edu 37 15 90196148 90196148 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . KIF7 NM_198525 exon2 c.C14A p.A5D CTCTGAGCCTCCA . 18 3 12 0 . 130 LOC283683 0 broad.mit.edu 37 15 23100429 23100430 + RNA DEL GG GG - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GTACGTGGGTGTG . 9 3 5 0 . . . 0 broad.mit.edu 37 16 74342857 74342857 + RNA DEL A A - rs371445246 alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TGTCTCAAAAAAA . 4 1 4 0 . . SMG1 23049 broad.mit.edu 37 16 18882689 18882689 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SMG1 NM_015092 exon16 c.A2299G p.N767D TACTGTTGGCTAA . 301 7 183 0 . 401 TTC25 83538 broad.mit.edu 37 17 40100452 40100452 + RNA DEL A A - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . TTC25 . . . . CGTCTCAAAAAAA . 8 2 6 0 . 37 HNRNPUL1 11100 broad.mit.edu 37 19 41798301 41798301 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . HNRNPUL1 NM_007040 exon8 c.G1151T p.G384V ACTTCGGACAGAG . 42 3 34 0 . 73 ZNF826P 0 broad.mit.edu 37 19 20594818 20594818 + RNA DEL T T - rs200861949 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . ZNF826P . . . . GAAGCCTTTTTTT . 7 2 4 0 . 5 . 0 broad.mit.edu 37 2 65894933 65894933 + RNA DEL A A - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . AGGTTTAAAAAAA . 12 3 8 0 . . ERBB4 2066 broad.mit.edu 37 2 212530115 212530115 + Missense_Mutation SNP T T A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . ERBB4 NM_001042599 exon15 c.A1804T p.S602C TGAAACTGTTTGC . 102 5 87 1 . 480 . 0 broad.mit.edu;bcgsc.ca 37 2 89309651 89309651 + RNA SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GGTTTTTGCTGAT . 183 64 95 0 . . SPTBN1 0 broad.mit.edu 37 2 54877117 54877117 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SPTBN1 NM_003128 exon26 c.G5568T p.L1856L GGCTCTGGGCACA . 36 3 26 0 . 378 FAM182B 0 broad.mit.edu 37 20 25755510 25755510 + Missense_Mutation SNP C C T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . FAM182B . . . . CCATCGCGGCCAC . 148 9 118 1 . 6 MUC4 4585 broad.mit.edu 37 3 195505763 195505763 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da MUC4_ENST00000463781,NS,carcinoma,0,4 MUC4 NM_018406 exon2 c.C12688T p.L4230F AGGAAAGGCTGGT . 91 5 76 0 . 1505 MUC4 4585 broad.mit.edu 37 3 195515290 195515290 + Missense_Mutation SNP C C G rs78535324 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da MUC4_ENST00000463781,NS,carcinoma,0,4 MUC4 NM_018406 exon2 c.G3161C p.S1054T GGGGTGCTGTCAC . 107 9 66 2 . 1505 LOC101243545 0 broad.mit.edu 37 3 161146937 161146937 + RNA SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTGTTGGCAACAT . 57 7 32 0 . . LOC550113 0 broad.mit.edu 37 4 68918905 68918905 + RNA DEL T T - rs34085122 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TCTTAATTTTTTT . 18 8 8 0 T|0.750;-|0.250 . . 0 broad.mit.edu 37 5 179078735 179078735 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CTCCCCTGGCTCC . 102 5 51 1 . . FAT2 2196 broad.mit.edu;ucsc.edu 37 5 150948137 150948137 + Missense_Mutation SNP A A G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . FAT2 NM_001447 exon1 c.T356C p.I119T GCTTGGATGATGA . 40 11 21 5 . 465 . 0 broad.mit.edu 37 5 34189325 34189325 + RNA DEL T T - rs372858629 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTTTTCTTTTTTT . 8 3 6 0 . . HLA-A 3105 broad.mit.edu;bcgsc.ca 37 6 29910607 29910607 + Silent SNP G G C rs72555397 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da HLA-A,NS,carcinoma,0,5 HLA-A NM_001242758 exon2 c.G147C p.V49V CGCCGTGGGCTAC . 74 11 54 1 . 89 KIAA1009 22832 broad.mit.edu 37 6 84894963 84894963 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . KIAA1009 NM_014895 exon13 c.C1605A p.D535E TATAATGTCCTCT . 61 3 94 0 . 119 SOBP 55084 broad.mit.edu;ucsc.edu 37 6 107827478 107827478 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SOBP NM_018013 exon3 c.G268T p.D90Y CCCGAGGACAGTG . 50 5 53 1 . 53 NBN 4683 broad.mit.edu 37 8 90983510 90983510 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . NBN NM_002485 exon6 c.C593A p.P198Q AGAGGTGGGTAAA . 222 4 112 0 . 86 PHYHIP 9796 broad.mit.edu 37 8 22079030 22079030 + Missense_Mutation SNP G G T rs199574600 bycluster;alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . PHYHIP NM_014759 exon5 c.C829A p.R277S CGTGGCGGAAGAC . 26 3 17 0 . 24 SLC39A4 55630 broad.mit.edu 37 8 145640396 145640396 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SLC39A4 NM_130849 exon4 c.C766A p.L256I TGATGAGGGGCAC . 64 4 26 0 . 54 SLC7A2 6542 broad.mit.edu 37 8 17415880 17415880 + Silent SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SLC7A2 NM_001164771 exon8 c.G1392T p.L464L CTCTCTGGTGGCA . 50 4 23 0 . 157 CELP 0 broad.mit.edu 37 9 135962591 135962593 + RNA DEL TGT TGT - novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TGCCCCTGTGTCC . 8 3 7 0 . . COX2 4513 broad.mit.edu;bcgsc.ca 37 MT 7929 7929 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . ENST00000361739 exon1 c.G344A p.G115E ACGGCGGACTAAT . 1157 30 268 0 . . BCOR 54880 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 39933623 39933623 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . BCOR NM_001123385 exon4 c.C976A p.P326T CCCCCGGCAGGCC . 45 5 32 0 . 351 PGD 5226 ucsc.edu;bcgsc.ca 37 1 10478978 10478978 + Missense_Mutation SNP G G A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . PGD NM_002631 exon11 c.G1205A p.C402Y AAAACTGCCAGGT . 38 4 41 0 . 39 IL22RA1 58985 ucsc.edu 37 1 24460734 24460734 + Missense_Mutation SNP G G T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . IL22RA1 NM_021258 exon4 c.C498A p.H166Q CTCTAAGTGGTAG . 43 4 49 0 . 62 CFHR1 3078 ucsc.edu 37 1 196797357 196797357 + Silent SNP A A G rs76835795 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da CFHR1,NS,carcinoma,0,1 CFHR1 NM_002113 exon4 c.A588G p.T196T CTGGACAGAACCA . 63 13 25 1 A|0.500;G|0.500 47 . 30816 ucsc.edu 37 7 92098628 92098628 + Silent SNP C C A rs200174854 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CATGTCCCCATTT . 66 15 23 2 . . LMO2 4005 ucsc.edu 37 11 33881017 33881017 + Missense_Mutation SNP T T C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da LMO2,NS,carcinoma,-1,2 LMO2 NM_005574 exon6 c.A569G p.K190R GCGCATTTGAAAC . 42 4 33 0 . 21 WDTC1 23038 bcgsc.ca 37 1 27609889 27609889 + Missense_Mutation SNP G T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da WDTC1,NS,carcinoma,+2,1 WDTC1 NM_015023 exon5 c.G240T p.K80N CCACAAGAAGCTG . 15 3 27 0 . 69 . 0 bcgsc.ca 37 1 146019699 146019699 + RNA SNP T C C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TCAGGCTTGGGTT . 144 18 99 0 . . BIRC6 57448 bcgsc.ca 37 2 32631613 32631613 + Missense_Mutation SNP G T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . BIRC6 NM_016252 exon9 c.G1465T p.D489Y AGATCAGATTCTG . 101 4 51 0 . 838 SNX25 83891 bcgsc.ca 37 4 186185626 186185626 + Missense_Mutation SNP G A A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SNX25 NM_031953 exon4 c.G274A p.A92T TTGCACGCATGCT . 121 5 45 0 . 100 ELOVL7 79993 bcgsc.ca 37 5 60067809 60067809 + Missense_Mutation SNP C T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ELOVL7,NS,lymphoid_neoplasm,0,1 ELOVL7 NM_001104558 exon3 c.G176A p.R59H GGCTTGCGATTTT . 58 4 42 0 . 24 . 0 bcgsc.ca 37 5 110284092 110284092 + RNA SNP A G G rs367881369 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTCCTCATGGTTG . 53 10 32 0 . . . 0 bcgsc.ca 37 5 110284097 110284097 + RNA SNP T C C rs370268370 TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CATGGTTGGCTAA . 52 10 33 1 . . . 653175 bcgsc.ca 37 7 53255583 53255583 + RNA SNP G T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CTTTGTGGGCTTC . 97 31 67 0 . . ZAN 7455 bcgsc.ca 37 7 100349919 100349919 + Missense_Mutation SNP T C C rs200193075 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da ZAN,trunk,malignant_melanoma,0,1 ZAN . . . . GAAAAATCCACCA . 182 24 133 9 T|0.996;C|0.004 658 PRSS1 5644 bcgsc.ca 37 7 142458938 142458938 + Missense_Mutation SNP T A A rs374770738 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . PRSS1 . . . . AAAATTTTCAGGA . 55 6 38 0 . 68 . 401525 bcgsc.ca 37 9 68370776 68370776 + RNA SNP G A A rs112484539 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CCCTGGGCACCAG . 98 25 74 3 G|0.500;A|0.500 . . 401525 bcgsc.ca 37 9 68370821 68370821 + RNA SNP C T T rs113256212 bycluster TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . GGCGGTCCAAAGT . 129 24 102 2 C|0.500;T|0.500 . . 286310 bcgsc.ca 37 9 136102181 136102181 + RNA SNP C T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CCGGCTCGTCAGT . 118 66 160 0 . . MARCH8 220972 bcgsc.ca 37 10 46028613 46028613 + Missense_Mutation SNP G A A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . MARCH8 NM_001002266 exon2 c.C47T p.A16V GAGATGGCATCCT . 58 4 45 0 . 29 MUC2 4583 bcgsc.ca 37 11 1093134 1093134 + Silent SNP C A A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . MUC2 NM_002457 exon30 c.C4953A p.T1651T CCCAACCACGACA . 339 34 174 10 . 614 CD163L1 283316 bcgsc.ca 37 12 7519849 7519849 + Missense_Mutation SNP T C C novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . CD163L1 NM_174941 exon18 c.A4262G p.H1421R GTCCCATGTGGGT . 42 4 31 0 . 238 SLC17A8 246213 bcgsc.ca 37 12 100774620 100774620 + Missense_Mutation SNP G T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . SLC17A8 NM_001145288 exon2 c.G243T p.M81I TATCATGAGTGGG . 45 4 49 0 . 89 . 121727 bcgsc.ca 37 13 90644559 90644559 + RNA SNP C A A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TCCTGGCAGCCTA . 15 3 28 0 . . . 246720 bcgsc.ca 37 14 81712881 81712881 + RNA SNP T A A novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . CGCATTTTTGATC . 44 28 42 0 . . ZNF676 163223 bcgsc.ca 37 19 22363737 22363737 + Missense_Mutation SNP C G G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . ZNF676 NM_001001411 exon3 c.G782C p.G261A CTAAATCCTTTGC . 71 8 58 1 . 146 . 1550 bcgsc.ca 37 19 41532038 41532038 + Missense_Mutation SNP C T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . . . . TTGGTGCGCTCCC . 64 4 45 0 . . BRSK1 84446 bcgsc.ca 37 19 55817627 55817627 + Missense_Mutation SNP G T T novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . BRSK1 NM_032430 exon17 c.G1898T p.S633I TCCCCAGCCTGAG . 54 4 30 0 . 192 MAGEA1 4100 bcgsc.ca 37 X 152482528 152482528 + Missense_Mutation SNP T G G novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . MAGEA1 NM_004988 exon3 c.A483C p.E161D GTCTGCTTCCTTC . 69 24 65 0 . 57 KCNN3 3782 hgsc.bcm.edu 37 1 154842252 154842253 + Missense_Mutation DNP AG AG CT novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 AG AG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001204087 exon1 c.C188A p.P63Q TGCGGAGGCTGAG . 44 6 27 0 . . THOC5 8563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29913065 29913066 + Missense_Mutation DNP GC GC TA novel TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 GC GC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . NM_001002878 exon18 c.G1633T p.A545Y CCCCAGCCAGTCC . 71 10 37 0 . . UHRF1 29128 hgsc.bcm.edu 37 19 4954681 4954681 + Silent SNP G G C rs80224821 bycluster;alternate_allele TCGA-W5-AA2U-01A-11D-A417-09 TCGA-W5-AA2U-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0792d270-49b3-4526-9045-86541d7cb765 b017d225-02d9-4581-be93-d2341687c3da . . . p.A672A . . CAGGGCGGGTCCC . 42 5 30 0 . .