Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	10290721	10290724	+	Frame_Shift_Del	DEL	ATAT	ATAT	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	ATAT	ATAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_138809	exon2	c.152_155del	p.51_52del	AGCCAAATATATC	.	60	16	37	0	.	.
APC	324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112175530	112175530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,1	.	NM_001127510	exon17	c.4238delT	p.M1413fs	TGGAATGGTAAGT	.	29	18	35	0	.	4158
STK11	6794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1207097	1207098	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STK11,right_upper_lobe,carcinoma,0,2	STK11	NM_000455	exon1	c.184_185del	p.62_62del	ACGGCAAGGTGAA	.	39	19	50	0	.	0
PSMD2	5708	hgsc.bcm.edu	37	3	184023829	184023846	+	Frame_Shift_Del	DEL	ATCTGTCCTGTAGGGAAG	ATCTGTCCTGTAGGGAAG	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	ATCTGTCCTGTAGGGAAG	ATCTGTCCTGTAGGGAAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002808	exon14	c.1703_1706del	p.568_569del	CCTTGAATCTGTC	.	45	6	51	0	.	.
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240908	39240908	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	KRTAP4-7,NS,carcinoma,0,2	KRTAP4-7	NM_033061	exon1	c.T450C	p.C150C	GTGCTGTGCCTCC	.	76	5	58	1	.	0
HMCN1	83872	hgsc.bcm.edu;bcgsc.ca	37	1	186088384	186088384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_031935	exon78	c.G11910T	p.R3970S	CGCTAGGAATGCG	.	78	4	61	0	.	.
DCP1B	196513	hgsc.bcm.edu	37	12	2062323	2062323	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	35	3	41	0	.	63
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160035180	160035180	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_033394	exon14	c.G2016A	p.Q672Q	CAGCCAGGACATC	.	34	9	36	0	.	.
AK2	204	hgsc.bcm.edu	37	1	33476435	33476435	+	Splice_Site	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_013411	exon8	c.695-1G>T	.	ACTAGGCTGAAAT	.	70	8	74	0	.	.
ZNF280D	54816	hgsc.bcm.edu	37	15	56959057	56959057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017661	exon15	c.C1673T	p.A558V	GATTTTGCAGGAT	.	46	2	44	0	.	.
PER2	8864	hgsc.bcm.edu	37	2	239166978	239166978	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_022817	exon16	c.C1839A	p.V613V	CGCTGGGACGTTT	.	50	4	36	0	.	.
NCOA3	8202	hgsc.bcm.edu	37	20	46279833	46279833	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	31	2	31	1	.	0
UBOX5	22888	hgsc.bcm.edu	37	20	3102954	3102954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	UBOX5,right_upper_lobe,carcinoma,0,1	UBOX5	NM_014948	exon3	c.G331A	p.D111N	CCTTGTCTGGGAC	.	46	2	29	0	.	0
TRO	7216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	54950954	54950954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016157	exon4	c.C1307T	p.A436V	GGCCTGCACCACC	.	42	4	27	0	.	.
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38816516	38816516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001206927	exon37	c.A5138T	p.N1713I	TACAGAACCTTTG	.	65	30	63	0	.	.
DENND5A	23258	hgsc.bcm.edu;bcgsc.ca	37	11	9192183	9192183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015213	exon9	c.C2048T	p.A683V	TTGCTGGCTGGCC	.	66	4	53	0	.	.
IVL	3713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152883128	152883128	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	IVL,NS,carcinoma,0,1	IVL	NM_005547	exon2	c.C855G	p.Y285X	GAAGTACCTGGAA	.	65	19	61	0	.	0
DPP3	10072	hgsc.bcm.edu;broad.mit.edu	37	11	66258758	66258758	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_130443	exon7	c.G702A	p.L234L	CAAGCTGAAGAGC	.	80	8	17	0	.	.
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34060664	34060664	+	Missense_Mutation	SNP	C	C	T	rs201796096		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_203446	exon7	c.G920A	p.R307H	CGGACACGATGAG	.	36	24	39	0	0.001	.
ST6GALNAC5	81849	hgsc.bcm.edu	37	1	77334298	77334298	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ST6GALNAC5,rectum,carcinoma,0,1	ST6GALNAC5	NM_030965	exon2	c.G132A	p.Q44Q	GCAGCAGCAACAG	.	31	6	39	2	.	0
NUFIP2	57532	hgsc.bcm.edu;bcgsc.ca	37	17	27614321	27614321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_020772	exon2	c.G691A	p.A231T	CCTTGGCACTATT	.	35	4	36	0	.	.
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35802530	35802530	+	Missense_Mutation	SNP	C	C	T	rs374250772		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_003995	exon11	c.C1741T	p.R581C	CTCACTCGCTTCA	.	15	5	15	0	.	.
FAM208A	23272	hgsc.bcm.edu	37	3	56695042	56695042	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FAM208A,NS,carcinoma,0,1	FAM208A	NM_001112736	exon10	c.T1164C	p.P388P	TTTCTCAGGTCTG	.	38	2	16	0	.	0
ESR2	2100	hgsc.bcm.edu	37	14	64749427	64749427	+	Missense_Mutation	SNP	G	G	T	rs147382781	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ESR2_ENST00000554572,mucosal,malignant_melanoma,0,2	ESR2_ENST00000554572	NM_001214902	exon1	c.C277A	p.R93S	ACTGGCGATGGAC	.	35	2	32	0	.	0
CTNNA2	1496	hgsc.bcm.edu	37	2	80874884	80874884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CTNNA2_ENST00000466387,NS,carcinoma,0,1	CTNNA2_ENST00000466387	NM_004389	exon18	c.G2605T	p.V869L	CCCCTTGTGAAGA	.	49	2	40	0	.	0
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156743095	156743095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_138400	exon1	c.G664C	p.A222P	CTGGGAGCCCTGG	.	48	27	48	0	.	.
OR10G9	219870	hgsc.bcm.edu	37	11	123893737	123893737	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR10G9,NS,carcinoma,0,1	OR10G9	NM_001001953	exon1	c.C18A	p.L6L	CAGCCTCGTGACA	.	40	4	64	1	.	0
GNAO1	2775	hgsc.bcm.edu;bcgsc.ca	37	16	56377816	56377816	+	Missense_Mutation	SNP	C	C	T	rs200947037		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GNAO1_ENST00000262494,lower_third,carcinoma,0,1	GNAO1_ENST00000262494	NM_138736	exon8	c.C1019T	p.T340M	CTGTGACGGACGT	.	15	3	21	0	.	0
LILRA1	11024	hgsc.bcm.edu	37	19	55106239	55106239	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LILRA1,NS,carcinoma,0,3	LILRA1	NM_006863	exon4	c.G180A	p.L60L	CCGTCTGTATAGA	.	36	2	41	0	.	0
LDB3	11155	hgsc.bcm.edu	37	10	88477868	88477868	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LDB3_ENST00000429277,NS,carcinoma,0,2	LDB3_ENST00000429277	NM_001171610	exon11	c.G1839T	p.P613P	TGCCCCGCTGTGT	.	32	2	21	0	.	0
ITGAX	3687	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	31384573	31384573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_000887	exon20	c.G2370T	p.L790F	CAGCTTGAAGTCC	.	30	4	22	0	.	.
C6orf136	221545	hgsc.bcm.edu	37	6	30619191	30619191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	C6orf136_ENST00000293604,NS,carcinoma,0,2	C6orf136_ENST00000293604	NM_001161376	exon4	c.G1255T	p.V419F	CTGCCCGTCCACT	.	24	3	14	0	.	0
NAP1L1	4673	hgsc.bcm.edu	37	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NAP1L1,NS,carcinoma,0,1	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	TCATCTTTTTTCT	.	36	3	16	0	.	0
MIR624	693209	hgsc.bcm.edu	37	14	31483858	31483858	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CACTTAGGTGTAA	.	89	5	86	0	.	.
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659315	43659315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018590	exon5	c.G982T	p.E328X	CATAGTGAGTCTA	.	57	4	46	0	.	.
MYADML2	255275	hgsc.bcm.edu	37	17	79898786	79898786	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001145113	exon3	c.C832T	p.L278L	CCACCAGCTGGCT	.	77	4	80	0	.	.
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47566596	47566596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001080467	exon3	c.C227A	p.A76D	CTAAGGGCAGTCA	.	30	4	57	0	.	.
GK2	2712	hgsc.bcm.edu	37	4	80329033	80329033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GK2,NS,carcinoma,0,1	GK2	NM_033214	exon1	c.C322A	p.L108I	TGTAGAGAGGCTC	.	49	2	79	0	.	0
ANGEL2	90806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	213178743	213178743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_144567	exon5	c.A766G	p.I256V	AGCAAATAGCACA	.	63	6	41	0	.	.
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111674853	111674853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001167604	exon2	c.A37T	p.N13Y	GGTGATTCACCCT	.	42	11	41	0	.	.
MPP5	64398	hgsc.bcm.edu	37	14	67787063	67787063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MPP5,NS,carcinoma,0,1	MPP5	NM_022474	exon12	c.C1486T	p.R496C	GAATTGCGTCAGA	.	33	2	39	0	.	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631064	122631064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SEMA5B_ENST00000451055,right_upper_lobe,carcinoma,0,2	SEMA5B_ENST00000451055	NM_001256347	exon19	c.G3013A	p.G1005R	GCAGCCCGAGACA	.	7	5	7	1	.	0
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2636	2636	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TGAATGGCTCCAC	.	2282	2113	849	1	.	.
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57415343	57415343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016592	exon1	c.G182A	p.R61H	AACAGCGCCGGAG	.	49	25	36	0	.	.
SEMA4F	10505	hgsc.bcm.edu	37	2	74900824	74900824	+	Missense_Mutation	SNP	G	G	A	rs375402877		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SEMA4F,NS,carcinoma,0,1	SEMA4F	NM_004263	exon7	c.G691A	p.V231M	GCAGCCGTGGCCT	.	59	3	41	0	.	0
LCE1B	353132	hgsc.bcm.edu	37	1	152785258	152785258	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LCE1B,NS,carcinoma,0,1	LCE1B	NM_178349	exon1	c.G336A	p.Q112Q	TGGCCAGCACTCT	.	98	4	79	0	.	0
MDN1	23195	hgsc.bcm.edu	37	6	90472214	90472214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014611	exon16	c.C2180A	p.P727H	CGTAAGGGTAGCC	.	46	3	41	0	.	.
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13865904	13865904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001369	exon27	c.A4228T	p.N1410Y	GAAGATTTAGTTG	.	70	33	59	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195507064	195507064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C11387G	p.T3796S	GTGTCGGTGACAG	.	92	5	63	0	.	0
TAS2R30	259293	hgsc.bcm.edu	37	12	11286072	11286072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TAS2R30,NS,carcinoma,0,1	TAS2R30	NM_001097643	exon1	c.C772A	p.Q258K	CAGGTTGCTTTTC	.	112	8	101	2	.	0
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34949681	34949681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015245	exon4	c.C650T	p.T217I	AGCACACCCCTCT	.	35	11	24	0	.	.
ADAM21P1	145241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	70714144	70714144	+	RNA	SNP	A	A	G	rs3751522		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CTTCTTAACCCTC	.	39	6	40	0	.	.
MAST4	375449	hgsc.bcm.edu;broad.mit.edu	37	5	66427645	66427645	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001164664	exon16	c.A1959G	p.G653G	AGGGGGAGACTGT	.	88	4	91	0	.	.
MIR5692A1	100847066	hgsc.bcm.edu;bcgsc.ca	37	11	89591706	89591706	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AGGGGAGTGCATA	.	108	29	126	0	.	.
SMYD4	114826	hgsc.bcm.edu	37	17	1703342	1703342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SMYD4,NS,carcinoma,0,1	SMYD4	NM_052928	exon5	c.C1346T	p.A449V	CACAGTGCAGAAA	.	31	2	39	0	.	0
PTPRH	5794	hgsc.bcm.edu	37	19	55697250	55697250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002842	exon17	c.C2881T	p.R961W	GTTCCCGCACCGT	.	19	4	10	0	.	.
WDR27	253769	hgsc.bcm.edu	37	6	170013745	170013745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	WDR27_ENST00000448612,bladder,carcinoma,0,2	WDR27_ENST00000448612	NM_182552	exon22	c.C2231T	p.S744L	GTAAATGATGAAC	.	37	2	45	0	.	0
MLL4	8085	hgsc.bcm.edu	37	19	36213993	36213993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014727	exon6	c.G2819T	p.G940V	CCACAGGTTCTGG	.	71	4	50	0	.	.
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	71932695	71932695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001172436	exon2	c.T163C	p.W55R	AACCCCACACAGC	.	27	23	18	0	.	.
ADRM1	11047	hgsc.bcm.edu	37	20	60879633	60879633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_175573	exon3	c.G330T	p.Q110H	GATGCAGGTATGG	.	46	2	42	0	.	.
RC3H2	54542	hgsc.bcm.edu	37	9	125613429	125613429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	RC3H2,right_lower_lobe,carcinoma,0,1	RC3H2	NM_001100588	exon20	c.C3311A	p.P1104Q	TGTACTGGATGCC	.	34	2	45	0	.	0
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66625573	66625573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_024036	exon1	c.G358A	p.V120I	GGCCCCGTCAATC	.	119	9	29	0	.	.
RSU1P2	100133308	hgsc.bcm.edu	37	10	45643042	45643042	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CTAGGCCGTATGG	.	42	3	45	0	.	.
BRIX1	55299	hgsc.bcm.edu	37	5	34915888	34915888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018321	exon1	c.G45T	p.Q15H	AGTTCAGGCGAAG	.	85	3	84	0	.	.
OR4K1	79544	hgsc.bcm.edu	37	14	20404579	20404579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR4K1,NS,carcinoma,0,1	OR4K1	NM_001004063	exon1	c.G754T	p.G252W	TTCTTCGGGCCTT	.	47	2	60	0	.	0
MARCO	8685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	119739044	119739044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006770	exon9	c.C826A	p.Q276K	GGAGCCCAGGGGA	.	38	11	61	0	.	.
ELN	2006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73474351	73474351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001081754	exon23	c.C1565A	p.P522H	TGGCTCCCGGCAT	.	80	15	85	0	.	.
RNF138P1	379013	hgsc.bcm.edu	37	5	54825063	54825063	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AAAACTGCATACA	.	75	4	66	0	.	.
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	34238182	34238182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CSMD2,NS,carcinoma,0,1	CSMD2	NM_052896	exon13	c.C1714T	p.P572S	AGCCTGGCTTCTT	.	10	5	7	0	.	0
LINC00467	84791	hgsc.bcm.edu	37	1	211591370	211591370	+	RNA	SNP	G	G	A	rs201196913		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AAAAAAGAAAAAT	.	43	4	26	0	.	.
VPS33B	26276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91544680	91544680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_018668	exon19	c.A1418G	p.D473G	AAGGCATCAGTAA	.	45	23	42	0	.	.
MIR5694	100847064	hgsc.bcm.edu	37	10	122648768	122648768	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TTTGTTGAGATGG	.	20	8	11	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2776	2776	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CCCACAGGTCCTA	.	892	827	354	0	.	.
LPO	4025	hgsc.bcm.edu	37	17	56343531	56343531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006151	exon11	c.G1537T	p.V513L	CCTCTGGTGCGGG	.	40	3	31	0	.	.
OTUD4	54726	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	146065546	146065546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001102653	exon15	c.C1268A	p.P423Q	ACACATGGATTGC	.	41	4	42	0	.	.
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233490614	233490614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_032435	exon4	c.T1168A	p.S390T	CGTCCATCGTTTG	.	61	39	47	0	.	.
CCNL2	81669	hgsc.bcm.edu	37	1	1326205	1326205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_030937	exon6	c.C700T	p.R234W	GGAACCGCACGAA	.	59	4	63	0	.	.
HS3ST5	222537	hgsc.bcm.edu;bcgsc.ca	37	6	114379057	114379057	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_153612	exon2	c.C405A	p.G135G	CTCAATGCCCTTA	.	55	4	47	0	.	.
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	19063525	19063525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017645	exon13	c.C1430A	p.T477K	AGTACTGTAACAC	.	55	5	40	0	.	.
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	58121322	58121322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	AGAP2,colon,carcinoma,0,1	AGAP2	NM_001122772	exon17	c.C2901G	p.I967M	ACACTCGATGCAG	.	416	38	33	0	.	0
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	92470476	92470476	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_004239	exon11	c.A3844T	p.K1282X	AATTTTTGAGTTT	.	37	10	32	0	.	.
CCDC142	84865	hgsc.bcm.edu;bcgsc.ca	37	2	74701921	74701921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_032779	exon9	c.C1984A	p.Q662K	CCTCCTGACAAGC	.	56	4	35	0	.	.
CKLF	51192	hgsc.bcm.edu	37	16	66597060	66597060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CKLF,NS,carcinoma,0,1	CKLF	NM_001040138	exon3	c.G273T	p.M91I	ATTCATGCTCATC	.	45	2	45	0	.	0
CGGBP1	8545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	88104670	88104670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001195308	exon4	c.G457A	p.D153N	ATCCATCAGGAAG	.	60	25	47	0	.	.
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26948452	26948452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014680	exon27	c.G5024T	p.G1675V	GCCTGCCCACTCT	.	31	4	25	0	.	.
ABCA13	154664	hgsc.bcm.edu	37	7	48318055	48318055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_152701	exon18	c.G7264T	p.E2422X	TCAACAGAGATGG	.	72	3	35	0	.	.
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228444441	228444441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001271223	exon16	c.G4675A	p.A1559T	GAGGTGGCTCAGG	.	36	4	31	0	.	.
WISP3	8838	hgsc.bcm.edu	37	6	112389433	112389433	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.,1	.	NM_198239	exon4	c.G669A	p.W223X	TATTTGGAAAAAA	.	91	4	92	0	.	33
KIAA1033	23325	hgsc.bcm.edu	37	12	105558483	105558483	+	Missense_Mutation	SNP	C	C	T	rs199807811	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_015275	exon32	c.C3419T	p.A1140V	AGACTGCGGCTGA	.	37	4	44	0	0.001	.
SARDH	1757	hgsc.bcm.edu;bcgsc.ca	37	9	136550380	136550380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_007101	exon17	c.G2098A	p.A700T	GGTCTGCGTCCAG	.	80	5	58	0	.	.
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	69881563	69881563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MYPN,NS,carcinoma,0,1	MYPN	NM_032578	exon2	c.G368A	p.R123Q	ACCCTCGAAGTCC	.	96	25	88	0	.	0
BCL6	604	hgsc.bcm.edu	37	3	187439688	187439688	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AATCGAGCCTTTA	.	84	3	51	0	.	.
AADAC	13	hgsc.bcm.edu	37	3	151545576	151545576	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	AADAC,NS,carcinoma,0,1	AADAC	NM_001086	exon5	c.G816T	p.V272V	ACCTGTGGAATCA	.	43	2	28	0	.	0
ZSCAN16	80345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28094609	28094609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_025231	exon3	c.C436A	p.P146T	TTGGCCCCCTTGG	.	49	22	43	0	.	.
AK3	50808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	4740952	4740952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_016282	exon1	c.A136G	p.M46V	GCAGCATGTTGTC	.	56	33	56	0	.	.
KRT7	3855	hgsc.bcm.edu	37	12	52629096	52629096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005556	exon2	c.G482A	p.R161H	GGGGCCGCCTGGA	.	89	4	18	0	.	.
TUBB2A	7280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3155891	3155891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001069	exon3	c.G245A	p.G82D	ATCTGGCCGAAGG	.	36	6	26	0	.	.
NACA	4666	hgsc.bcm.edu	37	12	57113583	57113583	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	NACA_ENST00000550952,NS,carcinoma,0,2	NACA_ENST00000550952	NM_001113203	exon3	c.C1731A	p.S577S	AGAAGAGGATGTA	.	43	2	41	0	.	0
PDGFD	80310	hgsc.bcm.edu	37	11	103814350	103814350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	PDGFD_ENST00000393158,colon,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon5	c.C602T	p.T201M	GGATCCGTTACTG	.	43	2	40	0	.	0
SPHAR	10638	hgsc.bcm.edu	37	1	229440935	229440935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_006542	exon1	c.C54A	p.C18X	GTTTTGCTTTTTT	.	67	3	33	0	.	.
EIF4ENIF1	56478	hgsc.bcm.edu	37	22	31859005	31859005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	EIF4ENIF1,colon,carcinoma,0,1	EIF4ENIF1	NM_019843	exon6	c.G700A	p.E234K	TCAGTTCGATGGT	.	49	2	30	0	.	0
KPNA7	402569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	98775657	98775657	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001145715	exon9	c.G1350A	p.L450L	AAGACACAGGTTT	.	32	17	18	0	.	.
HTT	3064	hgsc.bcm.edu	37	4	3076659	3076659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002111	exon1	c.A107C	p.Q36P	AGCAGCAGCAACA	.	8	7	6	0	.	.
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	112352927	112352927	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005445	exon18	c.G1909T	p.E637X	AGCATGGAAGTTT	.	59	20	47	0	.	.
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99568867	99568867	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FILIP1L_ENST00000354552,NS,carcinoma,0,2	FILIP1L_ENST00000354552	NM_182909	exon5	c.C1653G	p.T551T	TACATCGGTTTTG	.	33	12	17	0	.	0
FUK	197258	hgsc.bcm.edu	37	16	70497537	70497537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FUK_ENST00000428974,NS,carcinoma,0,3	FUK_ENST00000428974	NM_145059	exon3	c.C94T	p.R32W	GAAGTGCGGCAGA	.	41	2	30	0	.	0
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136305517	136305517	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_139027	exon16	c.T1839G	p.P613P	CTCCCCTAACACC	.	25	9	30	0	.	.
EIF5B	9669	hgsc.bcm.edu	37	2	100007024	100007024	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	EIF5B,NS,carcinoma,0,1	EIF5B	NM_015904	exon17	c.G2604C	p.G868G	CCCGGGGATGGGC	.	43	2	39	0	.	0
POLB	5423	hgsc.bcm.edu;bcgsc.ca	37	8	42202490	42202490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_002690	exon3	c.G139T	p.A47S	GTTATAGCAAAAT	.	58	4	50	0	.	.
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84337954	84337954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_133636	exon17	c.C3128T	p.P1043L	ACTTCAGGATTTG	.	42	30	64	0	.	.
TTN	7273	hgsc.bcm.edu	37	2	179611465	179611465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TTN_ENST00000360870,NS,carcinoma,0,1	TTN_ENST00000360870	NM_133379	exon46	c.C15662A	p.S5221Y	AGTAAAGATTTAT	.	50	4	49	0	.	0
SLC13A5	284111	hgsc.bcm.edu	37	17	6599187	6599187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	SLC13A5,NS,carcinoma,0,1	SLC13A5	NM_001143838	exon7	c.G913A	p.E305K	GGTACTCCTCCTG	.	29	3	15	0	.	0
OR52E8	390079	hgsc.bcm.edu	37	11	5878458	5878458	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	42	2	33	1	.	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210703977	210703977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	UNC80_ENST00000439458,caecum,carcinoma,0,1	UNC80_ENST00000439458	NM_032504	exon19	c.C3073T	p.R1025W	TTGGGGCGGAAAG	.	32	16	31	0	.	0
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	18631142	18631142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001204144	exon7	c.C536T	p.A179V	CAGGGGCAGTGGC	.	24	8	21	0	.	.
OR52I1	390037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4615690	4615690	+	Missense_Mutation	SNP	C	C	A	rs202168611	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	OR52I1,NS,carcinoma,0,1	OR52I1	NM_001005169	exon1	c.C422A	p.T141K	TTCTCACGCCTCA	.	25	8	32	0	.	0
FARSB	10056	hgsc.bcm.edu	37	2	223497945	223497945	+	Missense_Mutation	SNP	C	C	T	rs139596776	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FARSB,caecum,carcinoma,0,1	FARSB	NM_005687	exon7	c.G688A	p.V230I	AAAGGACGACACC	.	55	3	41	0	0.000	0
C17orf78	284099	hgsc.bcm.edu;bcgsc.ca	37	17	35746210	35746210	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_173625	exon6	c.C663T	p.C221C	GCTGTGCCAATGC	.	31	4	31	0	.	.
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	127724776	127724776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_014390	exon19	c.G2111A	p.G704D	TGGCAGGCACCCA	.	17	6	14	0	.	.
MS4A10	341116	hgsc.bcm.edu	37	11	60561564	60561564	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MS4A10,NS,carcinoma,0,1	MS4A10	NM_206893	exon5	c.C480T	p.Y160Y	AATGTACCCCAAC	.	47	2	35	0	.	0
PTPRK	5796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	128304395	128304395	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001135648	exon24	c.C3397T	p.Q1133X	CTGTCTGGACCAT	.	48	20	31	0	.	.
NPHP3-ACAD11	0	hgsc.bcm.edu	37	3	132415510	132415510	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TTGCAGGGTGAGA	.	50	4	41	0	.	.
CYP2G1P	22952	hgsc.bcm.edu	37	19	41404594	41404594	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TCATAGAACCATA	.	28	16	21	0	.	.
LLGL2	3993	hgsc.bcm.edu	37	17	73569305	73569305	+	Missense_Mutation	SNP	C	C	T	rs372867184		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LLGL2_ENST00000167462,colon,carcinoma,0,2	LLGL2_ENST00000167462	NM_004524	exon20	c.C2671T	p.R891C	TGCATCCGCCGGG	.	37	2	36	0	.	0
STIP1	10963	hgsc.bcm.edu	37	11	63965024	63965024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STIP1,rectum,carcinoma,0,1	STIP1	NM_006819	exon7	c.G859T	p.E287X	GCCATTGAAGTGG	.	24	2	23	0	.	0
COL12A1	1303	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	75853032	75853032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_004370	exon26	c.C4763T	p.P1588L	GGCACAGGTTCCC	.	42	4	39	0	.	.
BPIFA2	140683	hgsc.bcm.edu	37	20	31761957	31761957	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_080574	exon4	c.G375T	p.L125L	TAACCTGAGCTTC	.	50	4	32	0	.	.
ZACN	353174	hgsc.bcm.edu	37	17	74077646	74077646	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	ZACN,caecum,carcinoma,0,1	ZACN	NM_180990	exon7	c.G690A	p.A230A	CACGGCGCTCAAG	.	16	2	20	0	.	0
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	77745440	77745440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_024993	exon3	c.T1555C	p.X519R	TGGTTCATACCTC	.	76	13	56	0	.	.
CHGB	1114	hgsc.bcm.edu	37	20	5903817	5903817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CHGB,NS,carcinoma,0,1	CHGB	NM_001819	exon4	c.G1027T	p.E343X	TATGGAGAAGAAA	.	34	2	24	0	.	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74300266	74300266	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_013390	exon24	c.A3999G	p.S1333S	AGTCCATGATGGT	.	38	12	47	0	.	.
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	19890524	19890524	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_145117	exon4	c.C492A	p.I164I	AAACATCCAGGGG	.	21	7	16	0	.	.
NMT1	4836	hgsc.bcm.edu;ucsc.edu	37	17	43182337	43182337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_021079	exon11	c.G1443T	p.W481C	CAATTGGAAATGC	.	36	4	22	0	.	.
CGGBP1	8545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	88104763	88104763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CGGBP1_ENST00000462901,bladder,carcinoma,0,2	CGGBP1_ENST00000462901	NM_001195308	exon4	c.G364A	p.D122N	GGTGATCAGCCTT	.	83	49	39	0	.	0
FAM129A	116496	hgsc.bcm.edu	37	1	184868427	184868427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_052966	exon2	c.C71T	p.A24V	TTGATGGCAGCCT	.	95	4	61	0	.	.
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	8	61734399	61734399	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_017780	exon10	c.C2748T	p.S916S	AGACAGCACGTGG	.	49	4	49	0	.	.
P4HA2	8974	hgsc.bcm.edu	37	5	131531134	131531134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	P4HA2,NS,carcinoma,0,1	P4HA2	NM_004199	exon13	c.G1411T	p.D471Y	CCAGATCAGGGAA	.	39	2	39	0	.	0
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	57474462	57474462	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001005404	exon5	c.G271T	p.E91X	TCCTAGGAACATG	.	29	14	33	0	.	.
GYS2	2998	hgsc.bcm.edu	37	12	21711151	21711151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	GYS2,NS,carcinoma,0,2	GYS2	NM_021957	exon11	c.C1405A	p.R469S	CTGTGCGGTTGTT	.	47	2	39	0	.	0
HLF	3131	hgsc.bcm.edu	37	17	53392723	53392723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	HLF_ENST00000226067,colon,carcinoma,+1,1	HLF_ENST00000226067	NM_002126	exon3	c.G587T	p.R196L	ACCCTCGCAAACG	.	46	2	29	1	.	+1
TTN	7273	hgsc.bcm.edu	37	2	179434990	179434990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001267550	exon326	c.C75869A	p.P25290H	TCAAGAGGTTCAC	.	40	4	61	0	.	.
CCDC42B	387885	hgsc.bcm.edu	37	12	113593196	113593196	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001144872	exon6	c.C822T	p.I274I	GGACATCGAGGAC	.	51	3	68	0	.	.
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5239928	5239928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_139056	exon16	c.T2413A	p.W805R	GTGGACTGGCCCG	.	32	7	35	0	.	.
FAT4	79633	hgsc.bcm.edu	37	4	126336935	126336935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FAT4,NS,NS,0,1	FAT4	NM_024582	exon5	c.G6817T	p.G2273W	AATTTAGGGACAC	.	34	2	36	0	.	0
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73927158	73927158	+	Splice_Site	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_005685	exon3	c.124-2A>G	.	TCCCACAGTGCTC	.	33	15	36	0	.	.
TMEM55A	55529	hgsc.bcm.edu	37	8	92033557	92033557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	TMEM55A,colon,carcinoma,0,1	TMEM55A	NM_018710	exon2	c.G182A	p.C61Y	GATTGGCACACAC	.	43	2	40	0	.	0
LMBR1	64327	hgsc.bcm.edu	37	7	156480753	156480753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	LMBR1,NS,carcinoma,0,1	LMBR1	NM_022458	exon16	c.C1358T	p.A453V	CGAACTGCAGAGG	.	70	3	89	0	.	0
C7orf71	285941	hgsc.bcm.edu	37	7	26685944	26685944	+	Missense_Mutation	SNP	G	G	T	rs375873814	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	C7orf71_ENST00000409974,colon,carcinoma,0,2	C7orf71_ENST00000409974	NM_001145531	exon4	c.G295T	p.G99C	ACTCTCGGCCTCA	.	41	2	42	0	.	0
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78882199	78882199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_000745	exon5	c.G466T	p.G156C	TACAATGGCACTG	.	42	4	36	0	.	.
STK3	6788	hgsc.bcm.edu	37	8	99786981	99786981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	STK3,NS,carcinoma,0,1	STK3	NM_001256312	exon4	c.G177T	p.E59D	AAGCTTCTCTAAT	.	40	2	23	0	.	0
FMN2	56776	broad.mit.edu	37	1	240255531	240255531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	FMN2	NM_020066	exon1	c.G122A	p.G41D	GCGGGGGCAAGAA	.	27	3	18	0	.	451
PLOD1	5351	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12017915	12017915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PLOD1	NM_000302	exon8	c.T758C	p.L253P	ACTACCTGGGCAA	.	46	15	46	1	.	75
.	0	broad.mit.edu	37	1	149258520	149258521	+	RNA	DEL	TG	TG	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	GTTGTATGTGTGT	.	185	6	111	1	.	.
.	0	broad.mit.edu	37	1	143195473	143195473	+	RNA	DEL	A	A	-	rs201120234	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AAAAGCAAAAAAA	.	114	20	41	8	.	.
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145116152	145116152	+	RNA	SNP	C	C	T	rs74909635	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TTATTTCGTTTTT	.	32	4	25	0	.	.
FAM35A	54537	broad.mit.edu	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	FAM35A,NS,carcinoma,0,3	FAM35A	NM_019054	exon3	c.C719A	p.T240K	CTGATACAGAATT	.	200	4	195	1	.	48
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CTCGCAATGCAAG	.	25	3	46	1	A|1.000;|0.000	.
AGAP2	116986	broad.mit.edu	37	12	58131300	58131302	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	AGAP2	NM_001122772	exon1	c.728_730del	p.243_244del	CTCCCCCGGCGGC	.	377	5	34	0	.	167
.	0	broad.mit.edu	37	14	19969451	19969451	+	RNA	SNP	C	C	T	rs74425684		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AATAGACATATTT	.	42	8	13	0	C|0.250;T|0.750	.
.	0	broad.mit.edu	37	15	72617486	72617486	+	RNA	DEL	T	T	-	rs374358826		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TCTTTCTTTTCTT	.	10	4	5	0	.	.
.	0	broad.mit.edu	37	16	32077601	32077601	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CTCCAGGGACAAC	.	118	5	113	0	.	.
POLR3E	55718	broad.mit.edu	37	16	22337151	22337151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	POLR3E,rectum,carcinoma,+1,1	POLR3E	NM_001258033	exon18	c.C1418T	p.A473V	ACCACGCGTTGCT	.	50	5	46	0	.	62
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TTCCACAAGTCTC	.	87	3	75	1	.	.
TBC1D3P1-DHX40P1	0	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	rs376360537		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	GTAAAGCTGTTTA	.	70	7	46	0	.	.
KEAP1	9817	broad.mit.edu;bcgsc.ca	37	19	10602675	10602680	+	In_Frame_Del	DEL	CAGGTA	CAGGTA	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	KEAP1	NM_012289	exon3	c.898_903del	p.300_301del	CTTGACCAGGTAG	.	18	6	35	0	.	182
LOC541471	0	broad.mit.edu	37	2	112252464	112252464	+	RNA	SNP	G	G	A	rs1128295	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TCACCAGGGAGAG	.	84	4	67	1	G|0.500;A|0.500	.
PRPF40A	55660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	153514468	153514468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PRPF40A	NM_017892	exon25	c.G2635T	p.D879Y	TTCTGTCTTTTTC	.	106	40	93	1	.	149
RANBP2	5903	broad.mit.edu	37	2	109367844	109367844	+	Missense_Mutation	SNP	T	T	G	rs2693126		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	RANBP2_ENST00000283195,NS,carcinoma,0,6	RANBP2	NM_006267	exon10	c.T1398G	p.H466Q	GCCCCATGAAACC	.	347	4	342	0	.	488
.	0	broad.mit.edu	37	20	29589311	29589312	+	RNA	DEL	TG	TG	-	rs34016542		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	GCATCCTGTAAGT	.	6	2	10	0	.	.
GPR149	344758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154055683	154055683	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	GPR149	NM_001038705	exon4	c.G2001A	p.G667G	TGTTTCCCCTAGG	.	82	17	64	0	.	134
HEG1	57493	broad.mit.edu	37	3	124738300	124738300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	HEG1	NM_020733	exon5	c.C1394A	p.T465K	GCAGATGTTGTGC	.	31	3	27	0	.	109
SDHAP2	0	broad.mit.edu	37	3	195392705	195392705	+	RNA	DEL	C	C	-	rs59802848	bycluster	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	GTGTCACCAACAT	.	14	6	9	1	.	.
MUC4	4585	broad.mit.edu	37	3	195509879	195509879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.T8572C	p.S2858P	CTGTGGACACTGA	.	103	9	100	1	.	1505
.	0	broad.mit.edu	37	3	114998900	114998900	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AAATTTAAAAAAA	.	10	3	8	0	.	.
SMARCA5	8467	broad.mit.edu	37	4	144451680	144451680	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	SMARCA5	NM_003601	exon9	c.1158+1G>T	.	CATATGGTAAGTA	.	74	3	86	0	.	73
MTRR	4552	broad.mit.edu	37	5	7885967	7885967	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	MTRR	NM_024010	exon7	c.G1138T	p.G380X	AAGAAAGGTAACA	.	62	4	43	0	.	74
.	0	broad.mit.edu	37	5	34179621	34179621	+	RNA	DEL	G	G	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AAGAAAGAAAAGA	.	8	2	4	0	.	.
STAG3L1	0	broad.mit.edu	37	7	74991539	74991539	+	RNA	DEL	C	C	-	rs375690101		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	STAG3L1	.	.	.	.	CATGTTCTTTTTT	.	30	2	14	0	.	2
TMUB1	83590	broad.mit.edu	37	7	150778815	150778815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TMUB1	NM_031434	exon3	c.C562T	p.P188S	GGCCGGGCTCGGA	.	21	9	18	0	.	7
MLLT3	4300	broad.mit.edu;bcgsc.ca	37	9	20414379	20414379	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	MLLT3,NS,carcinoma,0,8	MLLT3	NM_004529	exon5	c.C465T	p.S155S	GCTACTGCTGCTG	.	105	6	81	0	.	125
PTCH1	5727	broad.mit.edu	37	9	98229635	98229635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PTCH1	NM_000264	exon15	c.C2323A	p.L775M	GGTCCAGCCCGTC	.	40	3	48	0	.	1850
MAGEE1	57692	broad.mit.edu	37	X	75648348	75648350	+	In_Frame_Del	DEL	CGC	CGC	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	MAGEE1	NM_020932	exon1	c.25_27del	p.9_9del	AATTCGCGCCGCC	.	74	7	40	0	.	236
NXF4	0	broad.mit.edu	37	X	101822612	101822612	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	NXF4	.	.	.	.	TTCCTATTTTTGC	.	6	2	5	0	.	14
PHKA1	5255	broad.mit.edu	37	X	71839078	71839078	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PHKA1	NM_002637	exon20	c.C2215T	p.R739X	CCTGTCGGGGATG	.	122	8	82	0	.	129
PTCH2	8643	ucsc.edu;bcgsc.ca	37	1	45295102	45295102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PTCH2	NM_001166292	exon9	c.C1187T	p.A396V	ACACGGGCAGCAC	.	32	4	28	0	.	96
NUP210L	91181	ucsc.edu	37	1	153967582	153967582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	NUP210L	NM_207308	exon38	c.G5461A	p.V1821M	CCAGCACTGCAAA	.	38	4	24	0	.	181
HTR1F	3355	ucsc.edu;bcgsc.ca	37	3	88040342	88040342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	HTR1F	NM_000866	exon2	c.G443T	p.W148L	TAGTTTGGATTAT	.	22	4	27	0	.	66
CATSPER1	117144	ucsc.edu;bcgsc.ca	37	11	65792768	65792768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	CATSPER1	NM_053054	exon1	c.C1083A	p.H361Q	CATGCTGTGAGCC	.	42	4	38	0	.	101
LIMA1	51474	ucsc.edu;bcgsc.ca	37	12	50625494	50625494	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	LIMA1	NM_001113546	exon4	c.120-1G>A	.	TGGTACCTTCAGA	.	34	4	32	0	.	67
.	0	ucsc.edu;bcgsc.ca	37	15	42764468	42764468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AATATGCATTTTC	.	39	4	40	0	.	.
CSPG4	1464	ucsc.edu	37	15	75981976	75981976	+	Missense_Mutation	SNP	C	C	T	rs200493777		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	CSPG4,NS,carcinoma,0,2	CSPG4	NM_001897	exon3	c.G1430A	p.R477H	CCATGGCGTGCCC	.	90	14	58	3	C|0.999;T|0.001	175
FDXR	2232	ucsc.edu	37	17	72860068	72860068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	FDXR	NM_001258012	exon10	c.C1253A	p.S418Y	AGCTTGGAGTCAA	.	35	4	20	0	.	68
BAIAP2	10458	ucsc.edu;bcgsc.ca	37	17	79090074	79090074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	BAIAP2	NM_017451	exon15	c.A1628G	p.D543G	ACGGGGATGGGAG	.	42	4	34	0	.	74
ZNF362	149076	bcgsc.ca	37	1	33741758	33741758	+	Silent	SNP	C	A	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	ZNF362	NM_152493	exon3	c.C96A	p.P32P	CATGCCCAGCCAG	.	18	3	32	0	.	31
LPIN1	23175	bcgsc.ca	37	2	11913797	11913797	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	LPIN1	NM_001261428	exon6	c.C795T	p.N265N	GGAAAACCTCTCC	.	53	4	46	0	.	99
PAX8	7849	bcgsc.ca	37	2	113993051	113993051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PAX8	NM_003466	exon9	c.G1007A	p.G336D	CCGGAGCCGACTT	.	49	4	42	0	.	42
POTEJ	653781	bcgsc.ca	37	2	131415051	131415051	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	POTEJ	.	.	.	.	GCTGCCCGATGGC	.	62	17	48	0	.	38
SEPSECS	51091	bcgsc.ca	37	4	25157778	25157778	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	SEPSECS	NM_016955	exon4	c.C428T	p.A143V	CCAGTTGCCATAG	.	50	4	99	0	.	55
.	0	bcgsc.ca	37	5	34192532	34192532	+	RNA	SNP	C	G	G	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TCACGGCCTTCCC	.	610	26	570	0	.	.
PAXIP1	22976	bcgsc.ca	37	7	154785435	154785435	+	Splice_Site	SNP	C	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	PAXIP1	NM_007349	exon4	c.260+1G>A	.	AGGATACGGCAGA	.	59	5	54	0	.	150
TEK	7010	bcgsc.ca	37	9	27212798	27212798	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TEK	NM_000459	exon17	c.C2780T	p.A927V	CATTTGCCATTGC	.	17	3	27	0	.	250
TAOK3	51347	bcgsc.ca	37	12	118619240	118619240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	TAOK3	NM_016281	exon15	c.C1502T	p.A501V	TTGTTGGCATGCG	.	20	3	49	0	.	151
AQR	9716	bcgsc.ca	37	15	35185921	35185921	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	AQR	NM_014691	exon23	c.C2514A	p.S838S	GATGTTGGATATG	.	78	4	72	0	.	139
VWA9	81556	bcgsc.ca	37	15	65877170	65877170	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	VWA9	NM_001207058	exon10	c.C1123A	p.P375T	TTTTGGGCTGCAG	.	75	5	72	1	.	15
CSPG4	1464	bcgsc.ca	37	15	75968449	75968449	+	Silent	SNP	G	T	T	rs367613285	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	CSPG4	NM_001897	exon10	c.C6411A	p.P2137P	ACCTGCGGGGCCG	.	45	4	41	0	.	175
.	0	bcgsc.ca	37	15	102299919	102299919	+	RNA	SNP	C	G	G	rs660113	alternate_allele	TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	AGGCGTCGGCAGA	.	127	12	103	1	.	.
TMEM256	254863	bcgsc.ca	37	17	7307394	7307394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_152766	exon1	c.C10A	p.P4T	CAGCTGGCCCGGC	.	69	4	76	1	.	.
.	390766	bcgsc.ca	37	17	16587076	16587076	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	TGAAAGCGCAGAG	.	59	4	65	0	.	.
DOT1L	84444	bcgsc.ca	37	19	2189743	2189743	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	DOT1L	NM_032482	exon4	c.G213T	p.M71I	GAGCATGCAGAGG	.	14	3	26	0	.	205
EIF4G1	1981	hgsc.bcm.edu	37	3	184039769	184039770	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	NM_001194946	exon11	c.A1419G	p.G473E	AGAAGGAGAAGCA	.	60	7	39	0	.	.
DPY19L2P2	0	broad.mit.edu	37	7	102825946	102825947	+	RNA	DNP	CA	CA	TG	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	CA	CA						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	.	.	.	CTTGACACTTGCC	.	44	5	44	0	.	.
FOLR3	2352	hgsc.bcm.edu	37	11	71850156	71850156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2X-01A-11D-A417-09	TCGA-W5-AA2X-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	afef815a-3e3b-497a-acf5-e9713ec6617f	ba2e4258-c494-4727-b7c4-7d24a61ce6ce	.	.	.	p.S149Y	.	.	CTGTCTCTGAGTG	.	110	4	64	0	.	.