Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq UBE3A 7337 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 25599825 25599825 + Frame_Shift_Del DEL A A - novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_000462 exon11 c.2140delG p.V714fs ATTGACAAATTCC . 70 17 115 0 . . UBA5 79876 hgsc.bcm.edu 37 3 132395425 132395426 + RNA INS - - A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TGAAATTAAAAAA . 24 11 15 0 . . TTC3 7267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 38460547 38460547 + Missense_Mutation SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001001894 exon4 c.A239G p.D80G TGCAAGATTATTG . 32 10 27 0 . . PPCS 79717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 42925444 42925444 + Missense_Mutation SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_024664 exon3 c.G783C p.E261D CCTTGAGTCACGA . 92 16 90 0 . . TPTE2P5 100616668 hgsc.bcm.edu 37 13 41438382 41438382 + RNA SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . ATAGCTAGAAAAA . 46 6 53 0 . . DLG2 1740 hgsc.bcm.edu 37 11 84865696 84865696 + Splice_Site SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 DLG2_ENST00000376104,NS,carcinoma,0,1 DLG2_ENST00000376104 NM_001142699 exon6 c.187-1G>T . TGTAAGCTAAAAT . 19 2 20 0 . 0 ZNF609 23060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 64968453 64968453 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_015042 exon4 c.C3400A p.Q1134K TACCGACAGGTAA . 35 12 45 0 . . SAA3P 6290 hgsc.bcm.edu 37 11 18134705 18134705 + RNA SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 SAA3P,NS,carcinoma,0,1 SAA3P . . . . TCACTTCTGTAGC . 39 2 54 0 . 0 NOL9 79707 hgsc.bcm.edu 37 1 6609749 6609749 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 NOL9,NS,carcinoma,0,2 NOL9 NM_024654 exon3 c.G626A p.R209H GACCAACGCCTGT . 30 2 38 0 . 0 TDG 6996 hgsc.bcm.edu 37 12 104374675 104374675 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_003211 exon4 c.G413A p.G138D AGATTGGCATAAA . 79 4 98 0 . . MTM1 4534 hgsc.bcm.edu 37 X 149814336 149814336 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_000252 exon9 c.G859A p.A287T GCAGTGGCCAACA . 45 3 49 0 . . MIR548F1 100302192 hgsc.bcm.edu 37 1 186357525 186357525 + RNA SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . CTCATCTTTTTTT . 47 4 45 0 . . COL8A2 1296 hgsc.bcm.edu;bcgsc.ca 37 1 36565684 36565684 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_005202 exon1 c.C160A p.P54T AGGGCGGTCCCAC . 49 4 54 0 . . SERPINB13 5275 hgsc.bcm.edu 37 18 61260205 61260205 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 SERPINB13,NS,carcinoma,0,1 SERPINB13 NM_012397 exon5 c.G472T p.E158X ACAAATGGTAGAG . 40 2 49 0 . 0 YOD1 55432 hgsc.bcm.edu;bcgsc.ca 37 1 207223000 207223000 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_018566 exon2 c.G412T p.A138S TAGAAGCACCACG . 94 5 81 0 . . PSG5 5673 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 43674291 43674291 + Splice_Site SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_002781 exon6 c.965-1G>A . AAGGAGCTGTCAT . 62 5 60 0 . . CFI 3426 hgsc.bcm.edu 37 4 110663684 110663684 + Silent SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CFI,colon,NS,0,1 CFI NM_000204 exon12 c.C1497T p.Y499Y ATTTCCGTAAAAC . 34 2 63 0 . 0 VPS52 6293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33236870 33236870 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_022553 exon6 c.C469T p.R157X GAAGTCGAATGTT . 39 13 39 0 . . HS3ST4 9951 hgsc.bcm.edu 37 16 26147094 26147094 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 HS3ST4_ENST00000331351,NS,carcinoma,0,4 HS3ST4_ENST00000331351 NM_006040 exon2 c.C896T p.T299M ACTACACGCAGAC . 28 2 26 0 . 0 MIR548N 100302152 hgsc.bcm.edu 37 2 179372484 179372484 + RNA SNP C C G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TTAAGGCTTTACA . 53 16 68 0 . . PTH2 113091 hgsc.bcm.edu;broad.mit.edu 37 19 49926533 49926533 + Missense_Mutation SNP G G C rs200733272 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PTH2,NS,carcinoma,0,9 PTH2 NM_178449 exon1 c.C64G p.L22V CCACCAGCAGCAG . 66 5 71 1 . 0 PSMF1 9491 hgsc.bcm.edu 37 20 1108090 1108090 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PSMF1,caecum,carcinoma,0,1 PSMF1 NM_006814 exon3 c.G304A p.A102T CAAGTGGCAGACT . 46 2 46 0 . 0 TTBK1 84630 hgsc.bcm.edu 37 6 43222295 43222295 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TTBK1,NS,carcinoma,0,1 TTBK1 NM_032538 exon6 c.C482T p.A161V ACTTTGCCATGGG . 24 2 49 0 . 0 ZNF99 7652 hgsc.bcm.edu 37 19 22940945 22940945 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ZNF99,right_upper_lobe,carcinoma,0,2 ZNF99 NM_001080409 exon4 c.G1766T p.G589V TTCTCCCCAGTAT . 54 3 55 0 . 0 CSGALNACT2 55454 hgsc.bcm.edu 37 10 43659419 43659419 + Missense_Mutation SNP G G T rs79064394 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CSGALNACT2,NS,carcinoma,0,5 CSGALNACT2 NM_018590 exon5 c.G1086T p.L362F GGTCTTGATGTTT . 78 4 57 0 . 0 ZNF99 7652 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 22940952 22940952 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001080409 exon4 c.C1759A p.H587N CAGTATGAATTGC . 53 5 52 0 . . CLEC14A 161198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 38724339 38724339 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_175060 exon1 c.G889A p.G297R TCCCCCCAAGGGT . 12 6 27 0 . . FASTKD3 79072 hgsc.bcm.edu 37 5 7867809 7867809 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FASTKD3,bladder,carcinoma,0,1 FASTKD3 NM_024091 exon2 c.G388A p.A130T CTGCTGCCATAGT . 16 2 37 0 . 0 FAM71B 153745 hgsc.bcm.edu 37 5 156590510 156590510 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FAM71B,colon,carcinoma,0,1 FAM71B NM_130899 exon2 c.G766T p.G256W CAGCCCCTGGAGT . 29 2 24 0 . 0 PSTPIP2 9050 hgsc.bcm.edu 37 18 43578790 43578790 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PSTPIP2,NS,carcinoma,0,1 PSTPIP2 NM_024430 exon8 c.G532A p.A178T AAGTTGCCAGTTT . 55 3 67 0 . 0 MGAM 8972 hgsc.bcm.edu 37 7 141719015 141719015 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 MGAM_ENST00000549489,colon,carcinoma,0,3 MGAM_ENST00000549489 NM_004668 exon4 c.G344T p.R115L ACCAACGTGGCTG . 41 2 38 0 . 0 TPR 7175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186312595 186312595 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_003292 exon27 c.C3613T p.R1205X TTTCTCGTCGTAT . 81 35 105 0 . . CLSTN2 64084 hgsc.bcm.edu 37 3 140178551 140178551 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CLSTN2,NS,carcinoma,0,1 CLSTN2 NM_022131 exon7 c.G1162T p.G388C AAACACGGCCCCA . 38 2 48 0 . 0 COLGALT2 23127 hgsc.bcm.edu 37 1 183908097 183908097 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 GLT25D2,colon,carcinoma,0,2 GLT25D2 NM_015101 exon12 c.C1679T p.T560M TAGTGCGTAGGGT . 26 2 35 0 . 0 ALS2CR12 130540 hgsc.bcm.edu 37 2 202216087 202216087 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ALS2CR12,NS,carcinoma,0,1 ALS2CR12 NM_001127391 exon2 c.C41A p.P14H TTCCAGGGGTCCC . 46 3 32 0 . 0 MIR3162 100422880 hgsc.bcm.edu;ucsc.edu 37 11 59362619 59362619 + RNA SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TACTCCCTAAAAA . 99 13 78 0 . . OGDH 4967 hgsc.bcm.edu 37 7 44737336 44737336 + Silent SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 OGDH,colon,carcinoma,0,1 OGDH NM_002541 exon17 c.G2313A p.R771R GGTGCGGCAGAAT . 18 2 23 0 . 0 DCP1B 196513 hgsc.bcm.edu 37 12 2062357 2062357 + Missense_Mutation SNP A A T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 DCP1B,NS,haematopoietic_neoplasm,0,1 DCP1B NM_152640 exon7 c.T749A p.L250H TGGTGGAGAGTCT . 44 4 38 2 . 0 GPHN 10243 hgsc.bcm.edu 37 14 67635650 67635650 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 GPHN_ENST00000478722,colon,carcinoma,0,1 GPHN_ENST00000478722 NM_020806 exon21 c.G1976T p.G659V TTTCAGGGAATCC . 30 3 28 0 . 0 GALNTL6 442117 hgsc.bcm.edu 37 4 173804049 173804049 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 GALNTL6,NS,carcinoma,0,1 GALNTL6 NM_001034845 exon8 c.C1032T p.I344I TGAAATCTCTTTT . 38 2 66 0 . 0 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52661362 52661362 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_018313 exon14 c.A1468T p.R490X CGTCTCTCCTGGC . 47 23 51 0 . . TRPT1 83707 hgsc.bcm.edu 37 11 63991664 63991664 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TRPT1,NS,carcinoma,0,1 TRPT1 NM_001160389 exon7 c.G584A p.R195H GCAGAGCGGAAGA . 16 2 6 0 . 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 134071413 134071413 + Missense_Mutation SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_032961 exon1 c.G118C p.D40H GCTGAAGATCTGG . 32 6 79 0 . . FIBIN 387758 hgsc.bcm.edu 37 11 27016617 27016617 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FIBIN,NS,carcinoma,0,1 FIBIN NM_203371 exon1 c.G544T p.G182W TCTGTGGGGCTCA . 26 3 29 0 . 0 ZNF493 284443 hgsc.bcm.edu 37 19 21606712 21606712 + Silent SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ZNF493_ENST00000392288,bladder,carcinoma,0,4 ZNF493_ENST00000392288 NM_001076678 exon4 c.T1251C p.S417S GGAGTCTTCACAC . 33 2 47 1 . 0 RBM20 282996 hgsc.bcm.edu;bcgsc.ca 37 10 112579834 112579834 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001134363 exon10 c.G2555T p.G852V AGGCTGGAAAAGA . 52 4 48 0 . . TMEM150A 129303 hgsc.bcm.edu 37 2 85826690 85826690 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TMEM150A,NS,carcinoma,0,1 TMEM150A NM_001031738 exon7 c.C532A p.R178R CACTTCGCAGATA . 35 2 30 0 . 0 ZNF738 148203 hgsc.bcm.edu;ucsc.edu 37 19 21565705 21565705 + RNA SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . GCCACAGCCGGGC . 55 21 99 0 . . UGT1A9 54600 hgsc.bcm.edu 37 2 234581157 234581157 + Missense_Mutation SNP A A C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 UGT1A9,NS,carcinoma,0,2 UGT1A9 NM_021027 exon1 c.A577C p.I193L CCCAGAATTCTCT . 67 3 74 1 . 0 NPM3 10360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 103542240 103542240 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_006993 exon3 c.C319T p.P107S CCATGGGTTGGCA . 12 7 22 0 . . WBSCR22 114049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 73098119 73098119 + Missense_Mutation SNP G G C rs148529785 bycluster;alternate_allele TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001202560 exon2 c.G71C p.R24P AAGCCCGGAAATA . 85 24 86 0 . . ADAM30 11085 hgsc.bcm.edu;broad.mit.edu 37 1 120438863 120438863 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ADAM30,NS,carcinoma,0,1 ADAM30 NM_021794 exon1 c.C97A p.H33N CAGGGTGAAAAAT . 21 4 35 0 . 0 EHD3 30845 hgsc.bcm.edu 37 2 31457587 31457587 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 EHD3,NS,carcinoma,0,1 EHD3 NM_014600 exon1 c.C100T p.L34L AAGCTGCTGCCCT . 75 3 76 0 . 0 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 104897649 104897649 + Silent SNP T T G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001100117 exon4 c.T822G p.A274A TTATGCTGATAGG . 30 8 40 0 . . OR5AN1 390195 hgsc.bcm.edu 37 11 59132147 59132147 + Silent SNP C C G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 OR5AN1,NS,carcinoma,0,1 OR5AN1 NM_001004729 exon1 c.C216G p.V72V AGATGTCTGCTAT . 35 2 34 0 . 0 ND4L 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 10725 10725 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . ENST00000361335 exon1 c.G256A p.G86S ACATATGGCCTAG . 13 11 14 0 . . TRIM33 51592 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 114952824 114952824 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_033020 exon12 c.C2176A p.L726I GAGAAAGGGCAGA . 49 4 66 0 . . GSDMA 284110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38128427 38128427 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_178171 exon6 c.G701A p.G234E CTCCTGGAGGTAA . 40 8 43 0 . . XPOT 11260 hgsc.bcm.edu 37 12 64824051 64824051 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 XPOT,NS,carcinoma,0,1 XPOT NM_007235 exon17 c.G1960T p.A654S AACCATGCTGTTG . 47 2 59 0 . 0 FYTTD1 84248 hgsc.bcm.edu 37 3 197500335 197500335 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FYTTD1,NS,carcinoma,0,1 FYTTD1 NM_032288 exon5 c.C559T p.R187C GATACTCGTCAGG . 76 4 97 1 . 0 ANO6 196527 hgsc.bcm.edu 37 12 45803228 45803228 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001204803 exon17 c.C2032T p.P678S CTGCAGCCTATGG . 80 4 108 0 . . TUBA3C 7278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 19751499 19751499 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_006001 exon4 c.C624A p.A208A ATAGATGGCTTCA . 45 8 58 0 . . PRDM4 11108 hgsc.bcm.edu 37 12 108145794 108145794 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PRDM4,NS,carcinoma,0,1 PRDM4 NM_012406 exon5 c.C524A p.A175D CTTTGGGCACCAT . 50 2 56 0 . 0 CCDC138 165055 hgsc.bcm.edu 37 2 109405307 109405307 + Splice_Site SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CCDC138,NS,carcinoma,0,1 CCDC138 NM_144978 exon3 c.152-1G>T . TTGACAGGTGATT . 27 2 50 0 . 0 IQGAP1 8826 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 15 90972899 90972899 + Splice_Site SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_003870 exon4 c.390+1G>T . CCTAAGGTAACTT . 41 4 34 0 . . WIPF2 147179 hgsc.bcm.edu 37 17 38421061 38421061 + Silent SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_133264 exon5 c.G633A p.P211P GCCACCGACGCCT . 45 4 60 0 . . POMGNT1 55624 hgsc.bcm.edu 37 1 46662489 46662489 + Missense_Mutation SNP G G T rs144959783 alternate_allele TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 POMGNT1_ENST00000371992,caecum,carcinoma,0,2 POMGNT1_ENST00000371992 NM_017739 exon4 c.C268A p.R90S CTCTGCGCCGTGG . 19 3 20 0 . 0 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 106959842 106959842 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_014978 exon15 c.G2095A p.E699K ACCAAGGAGGACT . 39 11 54 0 . . ZNF609 23060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 64968457 64968457 + Splice_Site SNP T T G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_015042 exon4 c.3402+2T>G . GACAGGTAACTGT . 36 12 44 0 . . TAP1 6890 hgsc.bcm.edu 37 6 32815404 32815404 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TAP1,rectum,carcinoma,0,1 TAP1 NM_000593 exon9 c.G1969T p.E657X TATTTTCTTGAAG . 17 2 21 0 . 0 SLCO5A1 81796 hgsc.bcm.edu 37 8 70744391 70744391 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 SLCO5A1,middle_lobe,carcinoma,0,1 SLCO5A1 NM_030958 exon2 c.G518A p.C173Y TCAAAGCAGCTGA . 41 2 63 0 . 0 SEC63 11231 hgsc.bcm.edu 37 6 108214751 108214751 + Missense_Mutation SNP T T C rs79703886 TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 SEC63,NS,carcinoma,0,2 SEC63 NM_007214 exon16 c.A1609G p.T537A CAGGTGTAGGTTT . 47 3 83 0 . 0 MPHOSPH8 54737 hgsc.bcm.edu 37 13 20233249 20233249 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 MPHOSPH8,NS,carcinoma,0,1 MPHOSPH8 NM_017520 exon6 c.C1691T p.A564V CAGATGCAATTCC . 47 2 92 0 . 0 NLRP3 114548 hgsc.bcm.edu 37 1 247588563 247588563 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 NLRP3,NS,carcinoma,0,1 NLRP3 NM_183395 exon3 c.G1818T p.L606L CAGGCTGGAGCTG . 27 2 35 0 . 0 FSIP2 401024 hgsc.bcm.edu;bcgsc.ca 37 2 186666462 186666462 + Missense_Mutation SNP A A T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_173651 exon17 c.A12696T p.L4232F ATTTTTAGAAGAT . 31 12 53 0 . . GLG1 2734 hgsc.bcm.edu;bcgsc.ca 37 16 74526937 74526937 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001145667 exon7 c.G1152A p.R384R ATTGCACCGGTAT . 51 4 63 0 . . OBSCN 84033 hgsc.bcm.edu 37 1 228480450 228480450 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 OBSCN_ENST00000570156,colon,carcinoma,0,4 OBSCN_ENST00000570156 NM_001271223 exon45 c.C12117T p.C4039C CGTGTGCGGGCAG . 43 2 36 0 . 0 ZNF480 147657 hgsc.bcm.edu 37 19 52825571 52825571 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ZNF480_ENST00000468240,NS,carcinoma,0,2 ZNF480_ENST00000468240 NM_144684 exon5 c.G1068T p.A356A GATTGCGCTCCTT . 41 2 39 0 . 0 OR2T33 391195 hgsc.bcm.edu 37 1 248436878 248436878 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 OR2T33,bladder,carcinoma,0,1 OR2T33 NM_001004695 exon1 c.C239T p.A80V TCAGCCGCCATTT . 90 4 86 0 . 0 LRRC4 64101 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 127669004 127669004 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_022143 exon2 c.C1690A p.R564R CAGTCCGGGCGGC . 34 4 28 0 . . MYH1 4619 hgsc.bcm.edu 37 17 10398547 10398547 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 MYH1,NS,carcinoma,0,1 MYH1 NM_005963 exon36 c.C5257T p.R1753C CATTGCGGGCTTC . 47 2 74 0 . 0 TLE2 7089 hgsc.bcm.edu 37 19 3011031 3011031 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TLE2,colon,carcinoma,0,1 TLE2 NM_001144761 exon13 c.C1043T p.T348M CTGTCCGTGGAAG . 42 2 59 0 . 0 PHLPP1 23239 hgsc.bcm.edu 37 18 60562374 60562374 + Missense_Mutation SNP G G A rs376292612 TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PHLPP1_ENST00000262719,NS,carcinoma,0,6 PHLPP1_ENST00000262719 NM_194449 exon5 c.G2197A p.V733I GCAGCCGTTGGAG . 40 2 58 0 . 0 FLG2 388698 hgsc.bcm.edu 37 1 152323970 152323970 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FLG2,NS,carcinoma,0,1 FLG2 NM_001014342 exon3 c.G6292A p.A2098T TTCCAGCTGTCCT . 57 3 68 0 . 0 APC 324 hgsc.bcm.edu 37 5 112155042 112155042 + Splice_Site SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 APC,colon,carcinoma,0,1 APC NM_001127511 exon8 c.1258+1G>T . ATCCAAGTATGTT . 34 2 33 0 . 0 DNM2 1785 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 10941703 10941703 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001005361 exon21 c.G2593A p.E865K CCAGCCGAGCCAT . 27 8 28 0 . . VHL 7428 hgsc.bcm.edu 37 3 10191635 10191635 + Silent SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 VHL,NS,carcinoma,-2,1 VHL NM_000551 exon3 c.C628A p.R210R CATCAACGGATGG . 23 2 26 0 . -2 DCP1B 196513 hgsc.bcm.edu 37 12 2062353 2062353 + Missense_Mutation SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 DCP1B,rectum,carcinoma,0,1 DCP1B NM_152640 exon7 c.C753G p.H251Q CTGCTGGTGGAGA . 41 3 35 2 . 0 BPHL 670 hgsc.bcm.edu;bcgsc.ca 37 6 3127475 3127475 + Splice_Site SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_004332 exon3 c.212-1G>T . TTTTTAGGAAGTG . 48 4 35 0 . . C3orf67 200844 hgsc.bcm.edu 37 3 58870322 58870322 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 C3orf67,NS,carcinoma,0,1 C3orf67 NM_198463 exon7 c.C289A p.R97S TTTGGCGAAGTTT . 44 2 64 0 . 0 DNASE1L2 1775 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 2287818 2287818 + Silent SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001374 exon6 c.G642C p.A214A GCGGGCGCAGGAC . 19 4 32 0 . . CLRN3 119467 hgsc.bcm.edu 37 10 129676685 129676685 + Splice_Site SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CLRN3,NS,carcinoma,0,2 CLRN3 NM_152311 exon4 c.410-1G>A . AGGATGCTGAAAG . 46 3 39 0 . 0 CTNNA3 29119 hgsc.bcm.edu 37 10 69281681 69281681 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_013266 exon5 c.C498A p.N166K AGATTTGTTGGCA . 45 3 57 0 . . HUWE1 10075 hgsc.bcm.edu 37 X 53570921 53570921 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_031407 exon73 c.G11260T p.G3754C CTAAACCGGAGGA . 73 3 68 0 . . PHLDB1 23187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 118499246 118499246 + Silent SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001144758 exon6 c.G1707T p.V569V GCGGGTGCCTGTC . 50 13 73 0 . . ZNF135 7694 hgsc.bcm.edu 37 19 58578438 58578438 + Missense_Mutation SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2 ZNF135_ENST00000401053 NM_007134 exon4 c.A658G p.R220G GGAAAAAGGGAGA . 54 3 79 0 . 0 MLL2 8085 hgsc.bcm.edu 37 12 49420526 49420526 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 MLL2_ENST00000301067,colon,carcinoma,0,2 MLL2_ENST00000301067 NM_003482 exon48 c.G15223A p.G5075R GTGCCCCGCCCTG . 15 2 25 0 . 0 RBFA 79863 hgsc.bcm.edu 37 18 77805954 77805954 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 RBFA,colon,carcinoma,0,1 RBFA NM_024805 exon7 c.G831T p.K277N GAAAAAGGGAAGG . 19 2 23 0 . 0 F7 2155 hgsc.bcm.edu 37 13 113770013 113770013 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 F7,NS,carcinoma,0,1 F7 NM_000131 exon6 c.G470T p.G157V ACGGCGGCTGTGA . 21 2 34 0 . 0 ENOSF1 55556 hgsc.bcm.edu 37 18 674365 674365 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_202758 exon15 c.G1293T p.K431N GTGTTTCTTTACA . 62 3 54 0 . . CCDC80 151887 hgsc.bcm.edu 37 3 112357186 112357186 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CCDC80,NS,carcinoma,0,1 CCDC80 NM_199511 exon2 c.G1567T p.E523X GCAGCTCGTCCTC . 37 2 32 0 . 0 ZPBP2 124626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38028702 38028702 + Missense_Mutation SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_199321 exon5 c.G586C p.E196Q ATTCCAGAACATG . 43 6 34 0 . . WDR33 55339 hgsc.bcm.edu 37 2 128520647 128520647 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 WDR33,NS,carcinoma,0,1 WDR33 NM_001006623 exon7 c.G713A p.R238K AGAATTCTTTCCT . 45 2 56 0 . 0 ETS1 2113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 128354828 128354828 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 ETS1_ENST00000392668,NS,carcinoma,0,2 ETS1_ENST00000392668 NM_001143820 exon7 c.C752T p.S251L ATGACCGAGGGGT . 25 9 36 0 . 0 SNX31 169166 hgsc.bcm.edu 37 8 101601166 101601166 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 SNX31,NS,carcinoma,0,1 SNX31 NM_152628 exon11 c.C1020A p.N340K GTTCTGGTTGAGA . 40 2 63 0 . 0 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 55537426 55537426 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_006269 exon4 c.C984T p.D328D TCAAGACGGCACT . 39 5 51 0 . . FAM98B 283742 hgsc.bcm.edu 37 15 38776827 38776827 + Silent SNP T T A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 FAM98B_ENST00000397609,NS,carcinoma,0,1 FAM98B_ENST00000397609 NM_173611 exon8 c.T1269A p.G423G TGGTGGTGGTGGT . 10 2 9 0 . 0 NUP210L 91181 hgsc.bcm.edu 37 1 153965494 153965494 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_207308 exon39 c.C5563A p.P1855T TACCTGGCTGTGG . 59 4 84 0 . . OR6C2 341416 hgsc.bcm.edu 37 12 55846882 55846882 + Silent SNP G G T rs142733366 alternate_allele TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 OR6C2,shoulder,malignant_melanoma,0,1 OR6C2 NM_054105 exon1 c.G885T p.V295V GCAAGTGAAACAA . 35 2 25 0 . 0 NCOA4 8031 hgsc.bcm.edu;bcgsc.ca 37 10 51580885 51580885 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_001145261 exon5 c.G336T p.L112F GTTATTGGGCCAG . 77 4 69 0 . . VANGL1 81839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 116206776 116206776 + Silent SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_138959 exon4 c.C699A p.I233I CTTCATCCATTAC . 31 9 29 0 . . PPARD 5467 hgsc.bcm.edu 37 6 35392430 35392430 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PPARD,caecum,carcinoma,0,1 PPARD NM_001171818 exon8 c.C952A p.R318S TTCCTGCGCAGCC . 18 2 27 0 . 0 EIF4ENIF1 56478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 31854517 31854517 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . NM_019843 exon7 c.G907T p.G303X AGTCTCCTGGGGA . 112 13 119 0 . . PSD 5662 hgsc.bcm.edu 37 10 104173619 104173619 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 PSD_ENST00000020673,NS,carcinoma,0,2 PSD_ENST00000020673 NM_001270965 exon6 c.C1460T p.A487V GCCTCTGCCTCCT . 31 2 30 0 . 0 TRPC7 57113 hgsc.bcm.edu 37 5 135561813 135561813 + Missense_Mutation SNP C C A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 TRPC7,NS,carcinoma,0,2 TRPC7 NM_020389 exon9 c.G2171T p.R724I TTGATTCTCATTA . 47 2 33 0 . 0 DCP1B 196513 hgsc.bcm.edu 37 12 2062323 2062323 + Silent SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 .,4 . NM_152640 exon7 c.A783G p.Q261Q CTTCTCTTGCTGC . 27 2 27 1 . 63 OBSCN 84033 broad.mit.edu 37 1 228433225 228433225 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . OBSCN NM_001271223 exon13 c.C3869T p.T1290M AGGTGACGTGGTA . 47 3 75 0 . 2142 RAB3GAP2 25782 broad.mit.edu 37 1 220379290 220379290 + Missense_Mutation SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . RAB3GAP2 NM_012414 exon8 c.T671C p.L224P TGAAAAAGGCTAA . 93 4 77 0 . 120 HNRNPKP3 0 broad.mit.edu 37 11 43283606 43283606 + RNA DEL A A - rs201499316 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . AAATGTAAAAAAA . 6 1 5 0 . . TPTE2P6 0 broad.mit.edu 37 13 25155131 25155131 + RNA SNP G G C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TCCTCCGCAAGAT . 6 2 14 0 . . TPTE2P6 0 broad.mit.edu 37 13 25160768 25160768 + RNA SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . ATACCTTGAAGAA . 9 5 18 0 . . . 0 broad.mit.edu 37 14 20098927 20098927 + RNA DEL A A - rs373530853 TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TGGGAGAAAAAAA . 79 3 86 5 . . LOC283922 0 broad.mit.edu 37 16 74372644 74372644 + RNA SNP A A G rs2549260 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . CTTGTCAGGGGGA . 72 3 92 1 . . GPR179 440435 broad.mit.edu 37 17 36491145 36491145 + Silent SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . GPR179 NM_001004334 exon7 c.G1416A p.Q472Q AAACAGCTGCAGC . 5 2 12 0 . 170 PLEKHH3 79990 broad.mit.edu 37 17 40823370 40823370 + Splice_Site SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . PLEKHH3 NM_024927 exon8 c.A1283G p.E428G CTCACCTCCCCCG . 81 13 88 12 . 49 MOCOS 55034 broad.mit.edu 37 18 33767560 33767560 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . MOCOS NM_017947 exon1 c.G58A p.D20N TCCCGGGACCCGA . 31 8 31 0 . 84 CEACAM20 125931 broad.mit.edu 37 19 45017502 45017503 + RNA DEL GC GC - rs372255103 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . CEACAM20 . . . . GGTTTTGCTTTTT . 7 3 5 0 . 31 TUBA3D 113457 broad.mit.edu 37 2 132236997 132236997 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . TUBA3D NM_080386 exon3 c.G343T p.V115F GAGATTGTTGACC . 59 3 80 0 . 60 PLCG1 5335 broad.mit.edu 37 20 39793975 39793975 + Missense_Mutation SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . PLCG1 NM_182811 exon14 c.G1477A p.G493S AAGAATGGCATCC . 29 3 18 0 . 111 BAGE 85319 broad.mit.edu 37 21 11096543 11096544 + RNA DEL AG AG - rs55694987 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TGAGACAGAGTCT . 6 3 7 0 . . KRTAP10-6 386674 broad.mit.edu 37 21 46011400 46011400 + Silent SNP G G A rs371252868 TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 KRTAP10-6,NS,carcinoma,0,4 KRTAP10-6 NM_198688 exon1 c.C966T p.S322S ACCACAGGAGGGG . 38 3 43 0 . 57 BCHE 590 broad.mit.edu;bcgsc.ca 37 3 165547680 165547680 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . BCHE NM_000055 exon2 c.1142delG p.G381fs TTTAAACCTTCCT . 50 7 89 0 . 136 EGFEM1P 0 broad.mit.edu 37 3 168546588 168546590 + RNA DEL AAA AAA - rs11296821 bycluster;alternate_allele TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TTTGTTAAAAAAA . 7 2 4 0 A|1.000;|0.000 . C6orf132 647024 broad.mit.edu 37 6 42074970 42074970 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . C6orf132 NM_001164446 exon4 c.680delC p.P227fs GGCGGTGGGGGGG . 6 2 6 0 . 48 . 84443 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 106844361 106844361 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . AGGTCTCTTCCAG . 45 19 66 0 . . TCEAL2 140597 broad.mit.edu 37 X 101382096 101382096 + Silent SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . TCEAL2 NM_080390 exon3 c.A294G p.G98G AGGGGGAAGGGCA . 50 3 41 0 . 27 PKLR 5313 ucsc.edu 37 1 155261558 155261558 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . PKLR NM_000298 exon10 c.G1607A p.G536D TCAATGCCAAATT . 31 4 16 0 . 70 ARHGAP25 9938 ucsc.edu;bcgsc.ca 37 2 69046554 69046554 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . ARHGAP25 . . . . TTAGGTGATGCAG . 43 4 37 0 . 175 AFF4 27125 ucsc.edu 37 5 132219204 132219204 + Silent SNP G G A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . AFF4 NM_014423 exon20 c.C3192T p.G1064G TGAATTGCCTGGT . 36 4 27 0 . 120 PKN3 29941 ucsc.edu;bcgsc.ca 37 9 131475475 131475475 + Missense_Mutation SNP C C T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . PKN3 NM_013355 exon7 c.C980T p.A327V AGCTTGCCAGTGA . 24 4 40 0 . 62 MAML2 84441 ucsc.edu 37 11 95825407 95825407 + Silent SNP C C T rs61901862 bycluster TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 MAML2,rectum,carcinoma,0,2 MAML2 NM_032427 exon2 c.G1788A p.Q596Q CTGCTGCTGCTGC . 39 5 34 0 C|0.250;T|0.750 94 APLP2 334 ucsc.edu;bcgsc.ca 37 11 129992294 129992294 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . APLP2 NM_001243299 exon6 c.G838T p.D280Y GTGGAGGACCGAG . 40 4 48 0 . 71 AMFR 267 ucsc.edu;bcgsc.ca 37 16 56442015 56442015 + Missense_Mutation SNP G G T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . AMFR NM_001144 exon4 c.C527A p.P176H GTGGTGGGCGAGA . 28 4 25 0 . 40 SLC39A6 25800 ucsc.edu 37 18 33702188 33702188 + Missense_Mutation SNP T T C novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . SLC39A6 NM_012319 exon5 c.A1186G p.M396V TTTCCATTGCTGG . 24 4 14 0 . 81 AGL 178 bcgsc.ca 37 1 100366398 100366398 + Missense_Mutation SNP C T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . AGL NM_000644 exon26 c.C3569T p.P1190L CTGCTCCTTTGCC . 63 4 43 0 . 137 FAM20B 9917 bcgsc.ca 37 1 179041172 179041172 + Missense_Mutation SNP G A A rs200757870 TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . FAM20B NM_014864 exon8 c.G1123A p.V375M GACGCCGTGGACC . 24 3 34 0 G|0.999;A|0.001 38 ASPM 259266 bcgsc.ca 37 1 197094085 197094085 + Missense_Mutation SNP C A A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . ASPM NM_001206846 exon12 c.G3083T p.G1028V GTATTTCCTATAA . 63 4 59 0 . 444 THUMPD3 25917 bcgsc.ca 37 3 9406699 9406699 + Splice_Site SNP G T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . THUMPD3 . . . . TTTAAAGGACAGT . 23 3 32 0 . 46 GABRA2 2555 bcgsc.ca 37 4 46263983 46263983 + Missense_Mutation SNP C A A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . GABRA2 NM_000807 exon9 c.G1019T p.R340I CATCCTCTTTTGG . 22 3 68 0 . 134 F11 2160 bcgsc.ca 37 4 187194273 187194273 + Silent SNP G T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . F11 NM_000128 exon4 c.G267T p.V89V AAGAGTGAATAGG . 21 3 36 0 . 65 FOXK1 221937 bcgsc.ca 37 7 4796694 4796694 + Missense_Mutation SNP G T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 KIAA0415_ENST00000450194,NS,carcinoma,-2,2 FOXK1 NM_001037165 exon5 c.G1120T p.G374W GAGCCTGGGAAGG . 76 4 91 0 . 64 . 0 bcgsc.ca 37 9 103493949 103493949 + RNA SNP G A A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . GCCTCTGGCCGTA . 11 3 18 0 . . MPP7 143098 bcgsc.ca 37 10 28413008 28413008 + Silent SNP G A A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . MPP7 NM_173496 exon10 c.C567T p.N189N TATCCCGTTGACT . 59 4 53 0 . 60 ATRNL1 26033 bcgsc.ca 37 10 116853364 116853364 + Silent SNP C T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . ATRNL1 . . . . TCCCTCCTGACCG . 61 4 65 0 . 219 BEST3 144453 bcgsc.ca 37 12 70091527 70091527 + Missense_Mutation SNP G T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . BEST3 NM_032735 exon2 c.C52A p.H18N ACCTATGAAATCC . 58 4 72 0 . 129 LINC00643 646113 bcgsc.ca 37 14 62594889 62594889 + RNA SNP G T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . AAGAGAGCTATGA . 47 4 62 0 . . . 0 bcgsc.ca 37 15 102299929 102299929 + RNA SNP G A A novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . AGAGCAGGCAGAC . 172 8 167 1 . . PPL 5493 bcgsc.ca 37 16 4938984 4938984 + Missense_Mutation SNP C T T novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . PPL NM_002705 exon19 c.G2392A p.V798I CCTTTACAGCTTG . 57 4 50 0 . 168 ZNF527 84503 bcgsc.ca 37 19 37879999 37879999 + Missense_Mutation SNP A G G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . ZNF527 NM_032453 exon5 c.A1048G p.R350G CATCAGAGGATCC . 14 3 27 0 . 78 ADARB2-AS1 642394 hgsc.bcm.edu 37 10 1578004 1578005 + RNA DNP TC TC CT novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 TC TC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 . . . . . . TGAGTTCCCTTGC . 74 5 74 0 . . CECR2 27443 hgsc.bcm.edu 37 22 18016909 18016909 + Missense_Mutation SNP A A G novel TCGA-W5-AA38-01A-11D-A417-09 TCGA-W5-AA38-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0517c599-2c76-49f1-a280-75efe40220c4 02a37a1a-eea5-498e-994f-d32913700d81 CECR2,NS,carcinoma,0,1 CECR2 . p.K388R . . AAAAAAAGACTAA . 54 3 81 0 . 0