Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
SP140L	93349	hgsc.bcm.edu	37	2	231256872	231256873	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138402	exon12	c.1035_1036insG	p.G345fs	CAAAGGAGGCTAC	.	111	42	61	0	.	.
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30749940	30749940	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_006662	exon34	c.8578delA	p.R2860fs	GTCGGAGGGGGAG	.	65	17	39	0	.	.
BRD2	6046	hgsc.bcm.edu	37	6	32945611	32945612	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001113182	exon9	c.1407_1408insC	p.M469fs	TGCCATGCCCCCT	.	18	12	24	0	.	.
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	107371419	107371420	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001033050	exon3	c.1074_1075del	p.358_359del	TTCAAACTCTTTT	.	42	15	52	0	.	.
CACNA1A	773	hgsc.bcm.edu	37	19	13318673	13318690	+	In_Frame_Del	DEL	CTGCTGCTGCTGCTGCTG	CTGCTGCTGCTGCTGCTG	-	rs16054	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CTGCTGCTGCTGCTGCTG	CTGCTGCTGCTGCTGCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001127222	exon47	c.6959_6976del	p.2320_2326del	CACCGCCTGCTGC	.	10	3	8	0	.	.
NFE2L1	4779	hgsc.bcm.edu;broad.mit.edu	37	17	46136201	46136212	+	In_Frame_Del	DEL	CTTCTTCCTCTG	CTTCTTCCTCTG	-	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	CTTCTTCCTCTG	CTTCTTCCTCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_003204	exon6	c.1516_1527del	p.506_509del	CTTCCTCTTCTTC	.	21	6	9	0	.	.
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26755323	26755323	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3658T	p.L1220L	TCTGCAGAAGATC	.	160	49	139	0	.	.
PCDH17	27253	hgsc.bcm.edu	37	13	58207258	58207258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PCDH17,colon,carcinoma,0,1	PCDH17	NM_001040429	exon1	c.C578A	p.P193Q	AGTTCCCAGAACT	.	34	2	15	0	.	0
MROH9	80133	hgsc.bcm.edu	37	1	170941012	170941012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	C1orf129_ENST00000367759,NS,carcinoma,0,2	C1orf129_ENST00000367759	NM_025063	exon8	c.C604T	p.R202W	ATTGCACGGTGTC	.	27	2	20	0	.	0
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65312553	65312553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_139242	exon5	c.A703G	p.M235V	CCTCCATTGGCTG	.	21	9	25	0	.	.
PPARA	5465	hgsc.bcm.edu	37	22	46594338	46594338	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PPARA,mouth,carcinoma,0,1	PPARA	NM_001001928	exon3	c.G58T	p.E20X	GATCTAGAGAGCC	.	40	2	46	0	.	0
HSF4	3299	hgsc.bcm.edu	37	16	67203243	67203243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001040667	exon14	c.C1316A	p.P439Q	ATTCTCCAAGCCC	.	77	4	24	0	.	.
GRM8	2918	hgsc.bcm.edu	37	7	126883170	126883170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GRM8_ENST00000405249,NS,carcinoma,0,8	GRM8_ENST00000405249	NM_000845	exon1	c.G89A	p.R30K	TGAGTTCTTTGCA	.	50	2	34	0	.	0
SMC5	23137	hgsc.bcm.edu	37	9	72882839	72882839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_015110	exon3	c.G328T	p.V110F	TCTTAGGTTGGGT	.	99	4	57	0	.	.
HFM1	164045	hgsc.bcm.edu;bcgsc.ca	37	1	91726906	91726906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001017975	exon39	c.C4249A	p.P1417T	CATCAGGATGATA	.	74	4	72	0	.	.
DNAH2	146754	hgsc.bcm.edu	37	17	7630469	7630469	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_020877	exon3	c.G258T	p.L86L	TGCGCTGACAGGA	.	32	3	37	0	.	.
RPS28	6234	hgsc.bcm.edu	37	19	8386428	8386428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001031	exon1	c.G14A	p.R5H	CCAGCCGTGTGCA	.	83	4	58	0	.	.
LMTK2	22853	hgsc.bcm.edu	37	7	97820972	97820972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LMTK2_ENST00000297293,colon,carcinoma,0,2	LMTK2_ENST00000297293	NM_014916	exon11	c.G1195T	p.A399S	AGACCCGCGGCTG	.	46	3	29	0	.	0
EXD3	54932	hgsc.bcm.edu;broad.mit.edu	37	9	140201611	140201611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_017820	exon22	c.G2422A	p.G808S	GGGTGCCGTCGGC	.	15	7	9	0	.	.
NOLC1	9221	hgsc.bcm.edu;bcgsc.ca	37	10	103916788	103916788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004741	exon2	c.G133A	p.A45T	CAGGATGCCAATG	.	75	4	50	0	.	.
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141660609	141660609	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_018557	exon23	c.G3646C	p.D1216H	AATAATCCACAAT	.	47	15	20	0	.	.
CCDC173	129881	hgsc.bcm.edu	37	2	170510628	170510628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001085447	exon6	c.C916A	p.R306S	TAAGACGCTTTTT	.	92	4	81	0	.	.
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12835030	12835030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001080830	exon1	c.C20A	p.P7H	CCCCACCTAGACT	.	38	23	46	0	.	.
GTF3C4	9329	hgsc.bcm.edu	37	9	135564267	135564267	+	Splice_Site	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GTF3C4,right_upper_lobe,carcinoma,0,1	GTF3C4	NM_012204	exon5	c.2405-1G>T	.	TTTGCAGATCCCG	.	39	2	33	0	.	0
DDX10	1662	hgsc.bcm.edu;bcgsc.ca	37	11	108590611	108590611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004398	exon12	c.C1498A	p.L500M	TATGCCCTGTAAG	.	97	4	74	0	.	.
AGBL2	79841	hgsc.bcm.edu	37	11	47727437	47727437	+	Missense_Mutation	SNP	G	G	T	rs200616669		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024783	exon5	c.C265A	p.Q89K	CTATCTGTCTGTG	.	97	4	68	0	0.001	.
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	11049582	11049582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_182481	exon4	c.G319A	p.E107K	AGGTCTCCCGGGC	.	147	8	114	0	.	.
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167023497	167023497	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024687	exon17	c.C1659A	p.S553S	TTCCAAGGATTCT	.	109	48	51	0	.	.
ZKSCAN3	80317	hgsc.bcm.edu	37	6	28333606	28333606	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_024493	exon6	c.G1161A	p.K387K	TATCAAGCATCAG	.	35	4	29	0	.	.
NOTCH2	4853	hgsc.bcm.edu	37	1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	rs200464440	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NOTCH2_ENST00000369342,NS,carcinoma,0,2	NOTCH2_ENST00000369342	NM_001200001	exon4	c.A703T	p.T235S	GACAGGTGCCTCC	.	35	2	11	0	.	0
SPICE1	152185	hgsc.bcm.edu	37	3	113187725	113187725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SPICE1_ENST00000295872,rectum,carcinoma,0,2	SPICE1_ENST00000295872	NM_144718	exon9	c.C773T	p.A258V	TTGACAGCATTGG	.	45	2	42	0	.	0
PRMT3	10196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	20473693	20473693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_005788	exon11	c.T1011G	p.F337L	TCTGTTTGAGTCT	.	110	7	85	0	.	.
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	112070469	112070469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_031938	exon6	c.G784A	p.G262R	GACCTTGGGGAGA	.	64	21	37	0	.	.
GBE1	2632	hgsc.bcm.edu	37	3	81539564	81539564	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GBE1_ENST00000429644,NS,carcinoma,0,2	GBE1_ENST00000429644	NM_000158	exon16	c.G2103A	p.P701P	TCAATTCGGCAGA	.	26	2	30	0	.	0
XIRP2	129446	hgsc.bcm.edu	37	2	168104508	168104508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	XIRP2,colon,carcinoma,0,1	XIRP2	NM_152381	exon9	c.G6606T	p.K2202N	GAAAAAGAATATA	.	49	2	28	0	.	0
ANK1	286	hgsc.bcm.edu	37	8	41571689	41571689	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001142446	exon16	c.G1884A	p.P628P	GCTGTGCGGGGAG	.	116	5	77	0	.	.
FAT3	120114	hgsc.bcm.edu	37	11	92599977	92599977	+	Missense_Mutation	SNP	G	G	T	rs376837097		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	FAT3_ENST00000409404,NS,carcinoma,0,3	FAT3_ENST00000409404	NM_001008781	exon21	c.G11729T	p.R3910L	CGGGCCGTGCTGT	.	54	3	27	0	.	0
MIR3689A	100500846	hgsc.bcm.edu	37	9	137741921	137741921	+	RNA	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	GAGCACGGGATCA	.	54	6	42	0	.	.
TAAR8	83551	hgsc.bcm.edu	37	6	132874213	132874213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	TAAR8,colon,carcinoma,0,1	TAAR8	NM_053278	exon1	c.G382T	p.D128Y	TGCATCGACAGGT	.	30	2	28	0	.	0
WDR74	54663	hgsc.bcm.edu	37	11	62601270	62601270	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	WDR74_ENST00000525239,NS,carcinoma,0,2	WDR74_ENST00000525239	NM_018093	exon10	c.G915A	p.E305E	CTTATGCTCCAGA	.	47	2	34	0	.	0
SAMD9	54809	hgsc.bcm.edu	37	7	92734778	92734778	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001193307	exon2	c.C633A	p.V211V	CATCTTGACATCC	.	77	4	45	0	.	.
DENND1C	79958	hgsc.bcm.edu	37	19	6476920	6476920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DENND1C_ENST00000381480,colon,carcinoma,0,2	DENND1C_ENST00000381480	NM_024898	exon10	c.C626T	p.A209V	AGCGCCGCGAACA	.	42	2	31	0	.	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26755405	26755405	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3576T	p.L1192L	CACACAGAGTTTA	.	118	29	92	0	.	.
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	26755371	26755371	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3610T	p.Q1204X	ATCGTTGATGTTG	.	116	34	97	0	.	.
INO80	54617	hgsc.bcm.edu	37	15	41297827	41297827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	INOC1,face,carcinoma,0,2	INOC1	NM_017553	exon28	c.C3461A	p.S1154X	CTCTCCGAGATCT	.	45	2	18	0	.	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	26755635	26755635	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon27	c.C3467G	p.S1156X	ATGTTTGATTCCT	.	32	9	21	0	.	.
ITPR2	3709	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	26755420	26755420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon28	c.C3561G	p.I1187M	TAGCCTGATCAAA	.	115	25	92	0	.	.
DNMBP	23268	hgsc.bcm.edu	37	10	101639890	101639890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DNMBP,colon,carcinoma,0,1	DNMBP	NM_015221	exon16	c.C4226A	p.P1409Q	TTTGGCGGAGGAG	.	31	2	24	1	.	0
PLXNA4	91584	hgsc.bcm.edu	37	7	131887440	131887440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_020911	exon12	c.G2551A	p.A851T	TTTTGGCACCAGA	.	99	4	53	0	.	.
NLGN1	22871	hgsc.bcm.edu	37	3	173322868	173322868	+	Silent	SNP	C	C	T	rs151237969		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NLGN1,shoulder,malignant_melanoma,0,1	NLGN1	NM_014932	exon3	c.C480T	p.V160V	ATATGTCCCGACT	.	26	2	11	0	.	0
ASNS	440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	97487633	97487633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_133436	exon7	c.C860A	p.A287E	CCAATTGCAAATG	.	26	4	21	0	.	.
KDM6B	23135	hgsc.bcm.edu	37	17	7750177	7750177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,2	.	NM_001080424	exon9	c.T752C	p.L251S	CACCATTACCACC	.	15	2	13	1	.	95
WFIKKN2	124857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48913377	48913377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_175575	exon1	c.G79T	p.G27W	CTGCTCGGGGTGC	.	70	23	41	0	.	.
ACTL7A	10881	hgsc.bcm.edu	37	9	111625685	111625685	+	Silent	SNP	C	C	T	rs371393958		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ACTL7A,NS,carcinoma,0,1	ACTL7A	NM_006687	exon1	c.C1083T	p.C361C	GCTCTGCGGGGGC	.	33	3	22	0	.	0
TPR	7175	hgsc.bcm.edu	37	1	186281176	186281176	+	RNA	SNP	T	T	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CCATTATTAATAT	.	171	8	98	0	.	.
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56949739	56949739	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001005210	exon1	c.G372A	p.P124P	AGTGCCGCCTGGC	.	68	18	33	0	.	.
PTPRD	5789	hgsc.bcm.edu	37	9	8331583	8331583	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PTPRD_ENST00000346816,NS,carcinoma,0,2	PTPRD_ENST00000346816	NM_002839	exon44	c.A5533T	p.S1845C	CTTACCTGCAATG	.	25	4	27	1	.	0
OR8B3	390271	hgsc.bcm.edu	37	11	124266927	124266927	+	Silent	SNP	A	A	G	rs142812088		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	OR8B3,NS,carcinoma,0,1	OR8B3	NM_001005467	exon1	c.T321C	p.F107F	GATGACAAAAAAG	.	56	5	45	1	0.000	0
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52252121	52252121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138792	exon5	c.C1135T	p.P379S	AGTTGGGCAGTTT	.	87	28	48	0	.	.
MVD	4597	hgsc.bcm.edu	37	16	88721779	88721779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	MVD,NS,carcinoma,0,1	MVD	NM_002461	exon7	c.G725A	p.R242H	ATGCAGCGGGCCA	.	48	3	23	0	.	0
KIF2B	84643	hgsc.bcm.edu	37	17	51902198	51902198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	KIF2B,NS,carcinoma,0,1	KIF2B	NM_032559	exon1	c.C1804T	p.P602S	ACATTACCCACTC	.	33	2	23	0	.	0
SPATA31D5P	347127	hgsc.bcm.edu	37	9	84529888	84529888	+	RNA	SNP	T	T	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AGGGTCTTCCACA	.	46	16	49	0	.	.
LCE2B	26239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152659372	152659372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LCE2B,NS,carcinoma,0,1	LCE2B	NM_014357	exon2	c.C53T	p.P18L	GTCCTCCCAAGTG	.	96	33	77	0	.	0
ADAMTS20	80070	hgsc.bcm.edu	37	12	43925997	43925997	+	Missense_Mutation	SNP	G	G	T	rs141043529	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ADAMTS20_ENST00000389420,NS,carcinoma,0,6	ADAMTS20_ENST00000389420	NM_025003	exon3	c.C455A	p.T152K	GTTCCCGTCTGAA	.	45	2	37	0	.	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26755574	26755574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002223	exon27	c.C3528G	p.S1176R	GTTATTGCTCTTG	.	54	11	27	0	.	.
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43818646	43818646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_002373	exon4	c.G4975A	p.E1659K	AGAGAGGAGCCGG	.	83	24	47	0	.	.
SEMA6D	80031	hgsc.bcm.edu	37	15	48056069	48056069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SEMA6D_ENST00000558014,NS,carcinoma,0,2	SEMA6D_ENST00000558014	NM_153617	exon10	c.G770A	p.R257H	TGGCCCGCATATG	.	54	3	29	0	.	0
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	147040819	147040819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001270941	exon3	c.C319T	p.R107C	CATCACGTACCTT	.	16	5	14	0	.	.
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65309725	65309725	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	CEP68,NS,carcinoma,0,1	CEP68	NM_015147	exon6	c.C2160T	p.H720H	GAGCCACGCAGAT	.	27	16	30	0	.	0
DDX5	1655	hgsc.bcm.edu	37	17	62496866	62496866	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	DDX5_ENST00000540698,NS,carcinoma,0,2	DDX5_ENST00000540698	NM_004396	exon12	c.C1242A	p.I414I	ATAATTGATGACA	.	38	2	29	0	.	0
NAV3	89795	hgsc.bcm.edu	37	12	78520946	78520946	+	Splice_Site	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	NAV3,NS,carcinoma,0,1	NAV3	NM_014903	exon17	c.4239-1G>T	.	TTAACAGCATGCA	.	53	3	38	0	.	0
TCHH	7062	hgsc.bcm.edu	37	1	152084531	152084531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_007113	exon3	c.C1162G	p.Q388E	TCAGCTGCTGCTC	.	25	6	10	0	.	.
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13222402	13222402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_003829	exon6	c.G577A	p.G193R	CCTGTCCATTGAT	.	37	12	25	0	.	.
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50085219	50085219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_033031	exon8	c.C3535T	p.H1179Y	ATGACCCATGAGA	.	49	15	37	0	.	.
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	11969496	11969496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_017944	exon20	c.G2892C	p.L964F	AGGGTTGATGGTG	.	50	25	37	0	.	.
TRAF4	9618	hgsc.bcm.edu;broad.mit.edu	37	17	27071215	27071215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_004295	exon1	c.G85A	p.V29M	GAGCCTGTGCAGG	.	11	6	16	0	.	.
KCNQ5	56479	hgsc.bcm.edu	37	6	73834220	73834220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	KCNQ5,NS,malignant_melanoma,0,1	KCNQ5	NM_001160133	exon9	c.G1232T	p.G411V	AACAAGGGGAAGC	.	37	2	24	0	.	0
AKAP13	11214	hgsc.bcm.edu	37	15	86284600	86284600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	AKAP13,brain,glioma,0,1	AKAP13	NM_006738	exon35	c.G7944T	p.K2648N	GAAGAAGGGCACA	.	46	2	35	0	.	0
MYO3B	140469	hgsc.bcm.edu;bcgsc.ca	37	2	171371510	171371510	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_138995	exon29	c.C3450T	p.C1150C	AGACTGCAGCGAG	.	60	4	46	0	.	.
MSS51	118490	hgsc.bcm.edu	37	10	75184905	75184905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001024593	exon6	c.C1114A	p.L372M	GCAGCAGGGTGGG	.	61	2	37	0	.	.
LIG3	3980	hgsc.bcm.edu	37	17	33310393	33310393	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_013975	exon2	c.G369T	p.V123V	AGTGGTGCCCAAT	.	87	4	45	0	.	.
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	112450203	112450203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001105206	exon31	c.C4208A	p.P1403H	TCAATGGGACACT	.	50	29	55	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2410	2410	+	RNA	SNP	T	T	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TCATTATTACCCT	.	713	29	217	0	.	.
PIH1D2	120379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111942424	111942424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001082619	exon3	c.C236T	p.P79L	GATTGGGGAGCTG	.	66	22	56	0	.	.
SLC28A1	9154	hgsc.bcm.edu	37	15	85438311	85438311	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,4	.	NM_201651	exon6	c.C418G	p.L140V	AGGTTTCTCAAGC	.	69	2	42	0	.	118
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ADAMTS7,NS,neuroblastoma,0,1	ADAMTS7	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	21	3	12	2	.	0
SPATA5L1	79029	hgsc.bcm.edu	37	15	45697670	45697670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SPATA5L1,NS,carcinoma,0,1	SPATA5L1	NM_024063	exon2	c.G1242T	p.E414D	TAGGGAGGCTGCC	.	49	2	31	0	.	0
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	49851058	49851058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001127898	exon11	c.G1088A	p.R363H	CTCTACGCTCCAT	.	63	28	30	0	.	.
ANKRD30BP2	149992	hgsc.bcm.edu;broad.mit.edu	37	21	14417481	14417481	+	RNA	SNP	C	C	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	GTTTTACAGGCTG	.	273	59	264	0	.	.
SF3B1	23451	hgsc.bcm.edu	37	2	198273209	198273209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SF3B1,NS,carcinoma,0,1	SF3B1	NM_012433	exon8	c.G1001T	p.R334I	GATTTTCTTTTAC	.	45	2	44	0	.	0
ACAP3	116983	hgsc.bcm.edu	37	1	1237394	1237394	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ACAP3_ENST00000354700,NS,carcinoma,0,2	ACAP3_ENST00000354700	NM_030649	exon5	c.G312A	p.R104R	CTGCTGCCGCACG	.	44	2	32	1	.	0
MAP3K3	4215	hgsc.bcm.edu;bcgsc.ca	37	17	61767703	61767703	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_203351	exon13	c.C1236T	p.D412D	CTATGACGTGGAC	.	47	4	31	0	.	.
THOC7	80145	hgsc.bcm.edu	37	3	63825392	63825392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	THOC7,NS,carcinoma,0,1	THOC7	NM_025075	exon2	c.G77A	p.R26K	TTAATTCTCCGAT	.	37	2	42	1	.	0
ATP11A	23250	hgsc.bcm.edu	37	13	113530136	113530136	+	Silent	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_032189	exon28	c.C3208T	p.L1070L	CAGATGCTGTCCA	.	109	4	67	0	.	.
FLJ42393	0	hgsc.bcm.edu	37	3	187896873	187896873	+	RNA	SNP	G	G	A	rs201695497		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AGGGAGGGAGAGA	.	43	7	15	0	.	.
AQP12B	653437	hgsc.bcm.edu	37	2	241621970	241621970	+	Silent	SNP	G	G	A	rs370087461		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	AQP12B,NS,carcinoma,0,1	AQP12B	NM_001102467	exon1	c.C285T	p.T95T	GGACACGGTGGGG	.	68	5	46	1	.	0
HERC4	26091	hgsc.bcm.edu	37	10	69785435	69785435	+	Splice_Site	SNP	T	T	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.,1	.	NM_022079	exon9	c.778-2A>T	.	CCTTCCTAAAAAA	.	144	0	85	0	.	78
COL27A1	85301	hgsc.bcm.edu	37	9	117070033	117070033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	COL27A1,colon,carcinoma,-1,1	COL27A1	NM_032888	exon59	c.G5192A	p.C1731Y	AGACGTGTCTCAA	.	20	2	23	0	.	-1
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	23757376	23757376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SOX5,colon,carcinoma,-1,1	SOX5	NM_006940	exon9	c.C1109T	p.S370F	GTAGGAGATACAG	.	43	19	24	0	.	-1
ZCCHC14	23174	hgsc.bcm.edu	37	16	87443922	87443922	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_015144	exon13	c.C2814T	p.Y938Y	AGGGGCGTATTTC	.	98	4	67	0	.	.
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147029994	147029994	+	Silent	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001270941	exon4	c.C744G	p.L248L	CAGAAAGAGTTGT	.	92	41	47	0	.	.
TFG	10342	hgsc.bcm.edu	37	3	100467371	100467371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	TFG_ENST00000240851,colon,carcinoma,0,1	TFG_ENST00000240851	NM_006070	exon8	c.G1199T	p.R400L	GTTATCGATAAGG	.	39	2	24	0	.	0
PLA2G4E	123745	hgsc.bcm.edu	37	15	42292455	42292455	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	PLA2G4E,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PLA2G4E	NM_001206670	exon8	c.C699T	p.N233N	GGATTCGTTCACC	.	46	3	29	0	.	0
OSBPL3	26031	hgsc.bcm.edu	37	7	24849546	24849546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	OSBPL3,NS,malignant_melanoma,0,1	OSBPL3	NM_015550	exon20	c.C2197A	p.H733N	TCTCATGGGCATT	.	44	2	31	0	.	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30064437	30064437	+	Splice_Site	SNP	T	T	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_016418	exon10	c.999+2T>G	.	AGCAGGTGAGCAC	.	25	6	41	0	.	.
GPR179	440435	hgsc.bcm.edu	37	17	36495366	36495366	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	GPR179,rectum,carcinoma,-1,1	GPR179	NM_001004334	exon2	c.C837A	p.I279I	CTGATTGATGTCC	.	45	2	34	0	.	-1
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	IDH2,NS,haematopoietic_neoplasm,0,179	IDH2	NM_002168	exon4	c.G515A	p.R172K	GCGTGCCTGCCAA	.	39	11	37	0	.	0
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	173999084	173999084	+	Silent	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_014932	exon7	c.C2463A	p.T821T	AACAACCAGGGTA	.	87	22	40	0	.	.
RNU6-76	100873777	hgsc.bcm.edu	37	16	33524803	33524803	+	RNA	SNP	C	C	T	rs61143183		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	GTGGCACGGTGTC	.	81	4	41	0	.	.
ITPR3	3710	hgsc.bcm.edu	37	6	33661448	33661448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ITPR3_ENST00000374316,NS,adenocarcinoma,0,2	ITPR3_ENST00000374316	NM_002224	exon56	c.C7751T	p.T2584M	ACTACACGGGCCC	.	39	2	34	0	.	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	98242716	98242716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_000264	exon6	c.G901A	p.D301N	CTGGATCGGCCGG	.	28	12	21	0	.	.
SMG7	9887	hgsc.bcm.edu;broad.mit.edu	37	1	183514431	183514431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_173156	exon16	c.A2354G	p.H785R	CTCACCACTCTGG	.	22	4	12	0	.	.
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102100578	102100578	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_001130145	exon9	c.G1422T	p.L474L	AAGTCTGCAGGAA	.	60	14	43	0	.	.
EXOC1	55763	hgsc.bcm.edu	37	4	56756490	56756490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	NM_018261	exon12	c.T1477G	p.L493V	TCCCTGTTGGATA	.	53	15	49	0	.	.
CAP1	10487	broad.mit.edu	37	1	40530008	40530008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	CAP1,NS,carcinoma,0,1	CAP1	NM_006367	exon5	c.G404A	p.S135N	CTGTCAGCGAAAG	.	53	5	64	1	.	38
.	728841	broad.mit.edu	37	1	144220816	144220816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ENSG00000162825,bladder,carcinoma,0,2	.	.	.	.	.	AGAAAGAGCCTGA	.	62	9	37	1	.	.
LOC100288069	0	broad.mit.edu	37	1	700532	700532	+	RNA	SNP	T	T	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AAAAAATTCCTTT	.	23	5	13	0	.	.
AGAP6	414189	broad.mit.edu	37	10	51768543	51768543	+	Missense_Mutation	SNP	T	T	C	rs76153144		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	AGAP6,NS,carcinoma,0,3	AGAP6	NM_001077665	exon8	c.T658C	p.S220P	ATTCCATCGACTC	.	302	4	198	1	T|0.500;C|0.500	53
LINC00264	0	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AGCCCAGTGGACA	.	37	6	32	0	.	.
TPTE2P5	0	broad.mit.edu	37	13	41400911	41400922	+	RNA	DEL	TGTGTGTGTGTG	TGTGTGTGTGTG	-	rs200635743		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TATGTATGTGTGT	.	8	4	4	0	.	.
PABPN1L	390748	broad.mit.edu	37	16	88930645	88930645	+	Splice_Site	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	PABPN1L	NM_001080487	exon6	c.G797A	p.R266Q	ACTCACCGGTTCT	.	35	3	19	0	.	25
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CTTGTCAGGGGGA	.	155	6	65	1	.	.
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TTCCACAAGTCTC	.	93	4	68	1	.	.
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	KRTAP4-11,NS,carcinoma,0,7	KRTAP4-11	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	105	14	57	1	G|0.500;C|0.500	94
LRRC37A11P	0	broad.mit.edu	37	17	37190747	37190747	+	RNA	DEL	T	T	-	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TTTTTCTTTTTTT	.	17	3	5	0	.	.
.	0	broad.mit.edu	37	17	66141017	66141017	+	RNA	DEL	C	C	-	rs376314569		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TTTCTACAAAAAA	.	131	8	94	0	.	.
KIAA1683	80726	broad.mit.edu	37	19	18377943	18377943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	KIAA1683	NM_001145304	exon3	c.C407A	p.A136D	CGCCAGGCCTCCT	.	36	5	20	0	.	190
LOC541471	0	broad.mit.edu	37	2	112252464	112252464	+	RNA	SNP	G	G	A	rs1128295	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	TCACCAGGGAGAG	.	79	4	58	1	G|0.500;A|0.500	.
.	400986	broad.mit.edu	37	2	96628278	96628278	+	Missense_Mutation	SNP	G	G	C	rs182453827	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ENSG00000174501,NS,malignant_melanoma,0,1	.	.	.	.	.	AGGCTGGTTGTTT	.	106	11	69	1	.	.
RANBP2	5903	broad.mit.edu	37	2	109367844	109367844	+	Missense_Mutation	SNP	T	T	G	rs2693126		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	RANBP2_ENST00000283195,NS,carcinoma,0,6	RANBP2	NM_006267	exon10	c.T1398G	p.H466Q	GCCCCATGAAACC	.	428	5	297	1	.	488
BAGE	85319	broad.mit.edu	37	21	11078137	11078137	+	RNA	DEL	C	C	-	rs111912474		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AATTAGCCAGGCG	.	9	4	12	0	C|0.500;-|0.500	.
SYNJ1	8867	broad.mit.edu	37	21	34045776	34045776	+	Silent	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	SYNJ1,colon,carcinoma,0,2	SYNJ1	NM_203446	exon14	c.C1717A	p.R573R	ATACTCGAATTTT	.	38	3	42	0	.	253
PCDHGA9	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140783658	140783658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	PCDHGA9	NM_032089	exon1	c.G1139C	p.G380A	AGAATGGTCAAGT	.	56	17	37	1	.	110
COL9A1	1297	broad.mit.edu	37	6	70990553	70990553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	COL9A1,NS,carcinoma,0,1	COL9A1	NM_001851	exon10	c.C937A	p.P313T	CTCCTGGCTTTCC	.	36	5	37	1	.	228
MLL3	58508	broad.mit.edu	37	7	151962255	151962255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MLL3	NM_170606	exon8	c.G1052A	p.G351E	AGGTCTCCCGGGC	.	118	7	116	0	.	1564
TAS2R3	50831	broad.mit.edu	37	7	141464042	141464042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	TAS2R3	NM_016943	exon1	c.G84T	p.E28D	CATTGAGTTGGTC	.	37	3	26	0	.	40
.	0	broad.mit.edu	37	9	124170937	124170937	+	RNA	DEL	A	A	-	rs112905846	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AGATTTAAAAAAA	.	10	3	5	0	-|1.000;|0.000	.
TUBBP5	0	broad.mit.edu	37	9	141069844	141069844	+	RNA	SNP	T	T	C	rs77114551		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	ACATGCTATCGAC	.	52	4	35	0	T|0.500;C|0.500	.
RNR2	0	broad.mit.edu	37	MT	2555	2555	+	RNA	SNP	C	C	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CAGTGACACATGT	.	2026	12	588	1	.	.
ZNF157	7712	broad.mit.edu	37	X	47272699	47272699	+	Silent	SNP	A	A	G	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	ZNF157	NM_003446	exon4	c.A1227G	p.S409S	GCATTCAGGAGAG	.	58	3	32	0	.	46
FAM205B	389715	ucsc.edu	37	9	34834103	34834103	+	Silent	SNP	T	T	C	rs200572923	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	FAM205B	.	.	.	.	GTGATGTAGGTCT	.	39	16	30	7	.	10
ADCY4	196883	ucsc.edu;bcgsc.ca	37	14	24787682	24787682	+	Silent	SNP	G	G	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	ADCY4,NS,carcinoma,-1,1	ADCY4	NM_139247	exon26	c.C3174T	p.C1058C	GTAGGTGCAGAGC	.	40	4	30	0	.	86
.	0	bcgsc.ca	37	1	168907806	168907806	+	RNA	SNP	G	A	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	GGGGTGGACCCCA	.	19	6	17	0	.	.
.	0	bcgsc.ca	37	2	130988166	130988166	+	RNA	SNP	A	G	G	rs201275727	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CAGTACATGCACT	.	47	11	25	0	.	.
LOC401010	0	bcgsc.ca	37	2	132200652	132200652	+	RNA	SNP	C	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CTTCTGCCAGGCT	.	53	4	31	0	.	.
GUSBP1	0	bcgsc.ca	37	5	21481681	21481681	+	RNA	SNP	C	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	CAGACACGGGAGC	.	451	35	272	0	.	.
MTO1	25821	bcgsc.ca	37	6	74176311	74176311	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MTO1	NM_133645	exon3	c.G517T	p.V173F	TGCCGTGTCAGTG	.	52	4	51	0	.	59
.	0	bcgsc.ca	37	7	81213697	81213697	+	RNA	SNP	G	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	ACTCTTGCTATAA	.	89	4	62	0	.	.
TAF6	9179	bcgsc.ca	37	7	99707848	99707848	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	TAF6	NM_001190415	exon11	c.C1244A	p.A415E	AAGCCTGCGATGG	.	45	4	37	0	.	55
MUC6	4588	bcgsc.ca	37	11	1017988	1017988	+	Missense_Mutation	SNP	G	T	T	rs112579249	bycluster	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	MUC6	NM_005961	exon31	c.C4813A	p.P1605T	GTGATGGGGTTGG	.	68	13	49	1	G|0.500;T|0.500	408
STAT6	6778	bcgsc.ca	37	12	57499001	57499001	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	STAT6	NM_001178079	exon9	c.A934T	p.R312W	CGGCCCTGACCAG	.	48	4	59	0	.	69
.	0	bcgsc.ca	37	14	19500335	19500335	+	RNA	SNP	C	T	T	rs371871636		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	GGCTGGCGGTAGG	.	120	16	70	1	.	.
POTEG	404785	bcgsc.ca	37	14	19553530	19553530	+	Silent	SNP	C	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	POTEG	NM_001005356	exon1	c.C114T	p.S38S	GGGGAGCGGCAAG	.	463	39	302	10	.	118
.	0	bcgsc.ca	37	17	29349145	29349145	+	RNA	SNP	G	A	A	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	ACATATGTGTGTG	.	40	9	21	1	.	.
.	0	bcgsc.ca	37	19	22868275	22868275	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	AAGAAACCTTTCA	.	107	9	70	0	.	.
BAGE2	7179	bcgsc.ca	37	21	11021153	11021153	+	RNA	SNP	G	A	A	rs71286780	alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	.	.	.	.	.	ACAACCGTAGTGT	.	337	32	252	2	GTAGTGT|0.500;ATATCGA|0.500	.
HMGXB4	10042	bcgsc.ca	37	22	35683427	35683427	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	HMGXB4	NM_001003681	exon8	c.G1450T	p.G484C	TCAGAAGGTTCCA	.	18	3	25	0	.	52
LPIN1	23175	hgsc.bcm.edu	37	2	11943082	11943082	+	Missense_Mutation	SNP	C	C	A	rs4669781	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	LPIN1_ENST00000404113,NS,carcinoma,-2,1	LPIN1_ENST00000404113	NM_001261428	exon16	c.C2083A	p.P695T	GCCAAGCCATCAA	.	30	2	16	0	.	-2
SMG1	23049	broad.mit.edu	37	16	18882689	18882690	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-W6-AA0S-01A-11D-A417-09	TCGA-W6-AA0S-10A-01D-A41A-09	TG	TG						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	67fd4351-eff3-4ce8-87c8-d33cf1120c4b	3ed583ee-0f5b-475f-8401-f7e7d1679df3	.	SMG1	NM_015092	exon16	c.C2298T	p.N767D	ACTGTTGGCTAAA	.	277	12	177	0	.	401