Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
SPATA31A7	26165	hgsc.bcm.edu	37	9	41506533	41506537	+	Frame_Shift_Del	DEL	CAACA	CAACA	-	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	CAACA	CAACA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_015667	exon4	c.3804_3808del	p.1268_1270del	AGCAGTCAACAAG	.	58	0	127	0	.	.
BMS1P1	728053	hgsc.bcm.edu	37	10	48944619	48944620	+	RNA	INS	-	-	CTATAAGCATCAGTAC	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	CTGGCATCTATAA	.	213	4	384	3	.	.
SPATA31A4	642629	hgsc.bcm.edu	37	9	41321495	41321499	+	Frame_Shift_Del	DEL	TGTTG	TGTTG	-	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	TGTTG	TGTTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001242613	exon4	c.3848_3852del	p.1283_1284del	GTGGCTTGTTGAC	.	67	0	136	0	.	.
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32613960	32613960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_016252	exon4	c.T788C	p.L263S	ACCTCTTACCTAG	.	81	27	164	0	.	.
MOCOS	55034	hgsc.bcm.edu	37	18	33831179	33831179	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_017947	exon11	c.C2097T	p.G699G	TTTTGGCCGTCCT	.	96	4	141	0	.	.
DDX59	83479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200635799	200635799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001031725	exon2	c.A70G	p.I24V	TAATTATCTTAGC	.	51	25	26	0	.	.
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	127821523	127821523	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	BIN1_ENST00000259238,NS,carcinoma,0,2	BIN1_ENST00000259238	NM_139345	exon8	c.G684A	p.P228P	CAGGGACGGCAGC	.	73	18	99	0	.	0
TRIP11	9321	hgsc.bcm.edu	37	14	92469882	92469882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_004239	exon11	c.C4438A	p.Q1480K	ACGCTTGATATTC	.	90	4	145	0	.	.
SLC3A2	6520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62655849	62655849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001012662	exon12	c.T1580C	p.L527P	GGCGGCTGAGTGA	.	52	18	89	0	.	.
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51639969	51639969	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001005333	exon5	c.A1386G	p.L462L	GCCGCTACCACCC	.	60	20	85	0	.	.
MIPEPP3	650794	hgsc.bcm.edu	37	13	21965800	21965800	+	RNA	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	TCTCTAGATTTCA	.	63	4	102	0	.	.
PDZD2	23037	hgsc.bcm.edu	37	5	32077650	32077650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PDZD2,NS,carcinoma,0,1	PDZD2	NM_178140	exon18	c.C3620T	p.A1207V	TGGATGCCAGCCA	.	32	2	56	0	.	0
SDHAP1	255812	hgsc.bcm.edu;broad.mit.edu	37	3	195690096	195690096	+	RNA	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	TACTCCTTCTTCC	.	29	11	70	0	.	.
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240370270	240370270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_020066	exon5	c.G2158T	p.D720Y	TCAGGCGATGTCT	.	65	16	54	0	.	.
KIT	3815	hgsc.bcm.edu	37	4	55597561	55597561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KIT,NS,carcinoma,0,2	KIT	NM_000222	exon15	c.G2209A	p.D737N	AAGGCCGACAAAA	.	42	2	105	1	.	0
MUC4	4585	hgsc.bcm.edu	37	3	195509579	195509579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.G8872A	p.A2958T	AGGTGGCGTGACC	.	51	4	93	2	.	0
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11594920	11594920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_138783	exon8	c.C1607G	p.S536C	TTGAAGGACTTGC	.	45	18	68	0	.	.
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100198331	100198331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_012172	exon10	c.G1666A	p.A556T	GCCCAGGCCTGCG	.	32	15	49	0	.	.
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158157491	158157491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014568	exon7	c.A2419G	p.I807V	GCTCCCATTGTGA	.	64	35	78	0	.	.
CUX1	1523	hgsc.bcm.edu	37	7	101845271	101845271	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CUX1,colon,carcinoma,0,1	CUX1	NM_001202543	exon18	c.C2727T	p.T909T	TCTGACCGGGGCC	.	70	2	110	0	.	0
PXDN	7837	hgsc.bcm.edu	37	2	1658220	1658220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PXDN,NS,NS,0,1	PXDN	NM_012293	exon15	c.C1898T	p.A633V	ACAGTCGCAATCG	.	37	2	72	0	.	0
IL1F10	84639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113831950	113831950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173161	exon3	c.A77G	p.Q26R	ATGGCCAGCTGCT	.	36	10	40	0	.	.
HEPHL1	341208	hgsc.bcm.edu	37	11	93834378	93834378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001098672	exon14	c.G2452T	p.E818X	CATGCTGAGGTGG	.	47	4	81	0	.	.
PTPN12	5782	hgsc.bcm.edu	37	7	77230111	77230111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PTPN12,NS,carcinoma,0,1	PTPN12	NM_002835	exon8	c.G683T	p.C228F	CTATTTGTATTCA	.	36	2	70	0	.	0
ITGB1	3688	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	33211229	33211229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002211	exon9	c.G1084A	p.A362T	AATTTGCAGATAA	.	40	4	71	0	.	.
GUSBP4	375513	hgsc.bcm.edu	37	6	58256176	58256176	+	RNA	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	TCACAATAAATAA	.	26	11	37	0	.	.
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42489123	42489123	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001256214	exon8	c.C979G	p.L327V	CGATGAGGAAGAT	.	33	10	61	0	.	.
FZD5	7855	hgsc.bcm.edu	37	2	208632294	208632294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_003468	exon2	c.C1170A	p.C390X	CACGTAGCAGATG	.	45	4	47	0	.	.
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26237321	26237321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_031243	exon3	c.T74C	p.I25T	CCACCAATAAAGA	.	66	41	154	0	.	.
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu	37	19	51918507	51918507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SIGLEC12_ENST00000439889,NS,malignant_melanoma,0,2	SIGLEC12_ENST00000439889	NM_001171157	exon7	c.G1258A	p.E420K	CTCCTTCGTGCTC	.	71	5	110	1	.	0
UTP6	55813	hgsc.bcm.edu;bcgsc.ca	37	17	30192441	30192441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018428	exon18	c.C1580A	p.A527E	ATGTTCGCCATAT	.	61	4	104	0	.	.
ITGA9	3680	hgsc.bcm.edu;bcgsc.ca	37	3	37565093	37565093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002207	exon12	c.G1318T	p.G440C	GGAAATGGCTATC	.	68	4	131	0	.	.
ASH2L	9070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	37996519	37996519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_004674	exon16	c.C1817A	p.T606N	AGCACACCCTGGC	.	32	11	61	0	.	.
SCN5A	6331	hgsc.bcm.edu	37	3	38592470	38592470	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SCN5A_ENST00000413689,right_upper_lobe,carcinoma,0,6	SCN5A_ENST00000413689	NM_198056	exon28	c.G5393A	p.W1798X	TTCTCCCAGATCT	.	49	2	79	0	.	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52678790	52678790	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PBRM1_ENST00000356770,colon,carcinoma,0,3	PBRM1_ENST00000356770	NM_018313	exon9	c.A829T	p.K277X	TTTTTTTAATTGA	.	86	49	252	0	.	0
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57762447	57762447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_032269	exon16	c.A2342T	p.K781M	ACTTCAAGCAGCG	.	27	18	64	0	.	.
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37367894	37367894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001242476	exon4	c.A162T	p.R54S	TCAGAGAATTCAT	.	73	25	105	0	.	.
SNPH	9751	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	1277062	1277062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014723	exon3	c.G47T	p.R16L	GATCACGCAGGTG	.	79	7	111	0	.	.
SSRP1	6749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57100235	57100235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_003146	exon6	c.G632T	p.R211L	CGACCACGAGGAG	.	42	18	57	0	.	.
ITGA7	3679	hgsc.bcm.edu	37	12	56090083	56090083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ITGA7,colon,carcinoma,0,1	ITGA7	NM_001144996	exon13	c.G1883A	p.S628N	TGGGTGCTGGGCT	.	47	2	97	0	.	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559572	140559572	+	Missense_Mutation	SNP	T	T	C	rs17844504	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PCDHB8,NS,malignant_melanoma,0,1	PCDHB8	NM_019120	exon1	c.T1957C	p.C653R	CCTCCGTGCTCGG	.	74	3	84	1	.	0
SSBP2	23635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80724478	80724478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001256732	exon16	c.A1006G	p.S336G	GATTACTCAGGCT	.	79	6	160	0	.	.
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117663599	117663599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002944	exon28	c.C4633T	p.P1545S	TTCCTGGTGGTAA	.	121	41	197	0	.	.
CD1D	912	hgsc.bcm.edu	37	1	158152690	158152690	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001766	exon5	c.C630T	p.S210S	GCTGTCCCGTGGC	.	89	4	99	0	.	.
CDH23	64072	hgsc.bcm.edu	37	10	73468897	73468897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CDH23,NS,carcinoma,0,1	CDH23	NM_022124	exon26	c.C3149T	p.A1050V	GCGATGCCGTTGT	.	32	2	94	0	.	0
RNF112	7732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19319066	19319066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_007148	exon14	c.A1474G	p.T492A	CCAGACACCATGC	.	27	9	55	0	.	.
IPO5	3843	hgsc.bcm.edu	37	13	98671935	98671935	+	Silent	SNP	C	C	A	rs145166442	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	IPO5,arm,malignant_melanoma,0,1	IPO5	NM_002271	exon27	c.C2991A	p.I997I	GAAAATCATGAAG	.	37	2	76	0	.	0
SUPT7L	9913	hgsc.bcm.edu	37	2	27878277	27878277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SUPT7L,NS,carcinoma,0,1	SUPT7L	NM_014860	exon5	c.C937T	p.R313C	GGAAGCGTTCGCT	.	47	2	66	0	.	0
tRNA-Phe	0	hgsc.bcm.edu	37	MT	577	577	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	CCCACAGTTTATG	.	200	22	235	0	.	.
MRVI1	10335	hgsc.bcm.edu;ucsc.edu	37	11	10597537	10597537	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	CTCCCCCGTGCCC	.	41	9	98	0	.	.
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PIK3CA_ENST00000263967,NS,carcinoma,0,1131	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	127	40	221	0	.	0
HDX	139324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	83723901	83723901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_144657	exon3	c.T830G	p.I277S	CCCAGAATTCTCT	.	62	5	105	0	.	.
SLPI	6590	hgsc.bcm.edu	37	20	43882219	43882219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SLPI,NS,carcinoma,0,1	SLPI	NM_003064	exon2	c.C241A	p.P81T	TACTTGGGTTTGG	.	43	2	59	0	.	0
RBMX	27316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	135956307	135956307	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_002139	exon9	c.A1170G	p.R390R	CTAGTATCTGCTT	.	104	31	171	0	.	.
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240791	39240791	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KRTAP4-9_ENST00000377734,NS,carcinoma,0,2	KRTAP4-9_ENST00000377734	NM_033061	exon1	c.C333T	p.R111R	CTGCCGCCCCAGC	.	37	3	53	1	.	0
KCNH3	23416	hgsc.bcm.edu	37	12	49948260	49948260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KCNH3,rectum,carcinoma,0,1	KCNH3	NM_012284	exon11	c.G2059T	p.E687X	TACCCCGAGTTTG	.	47	2	74	0	.	0
MAST3	23031	hgsc.bcm.edu	37	19	18234175	18234175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	MAST3,NS,carcinoma,0,1	MAST3	NM_015016	exon6	c.G461A	p.R154H	GCTCTCGCAGTCT	.	29	2	24	0	.	0
OR52E8	390079	hgsc.bcm.edu	37	11	5878458	5878458	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	29	2	50	0	.	0
FAM153C	653316	hgsc.bcm.edu	37	5	177434138	177434138	+	RNA	SNP	G	G	A	rs144285503	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GGGGTTGGATCGC	.	16	4	10	0	.	.
ADH6	130	hgsc.bcm.edu;ucsc.edu	37	4	100125185	100125185	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GTGACACTGGGTT	.	26	12	24	0	.	.
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	196759763	196759763	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018897	exon30	c.A4833G	p.P1611P	TCCAAATGGTTCT	.	124	10	157	0	.	.
MBD5	55777	hgsc.bcm.edu;bcgsc.ca	37	2	149247273	149247273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_018328	exon12	c.G3373T	p.A1125S	ATGAGTGCCTTCA	.	61	4	62	0	.	.
RPRD1B	58490	hgsc.bcm.edu	37	20	36687879	36687879	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.,1	.	NM_021215	exon5	c.G612T	p.L204L	TTCTCTGCCCCAG	.	47	2	88	0	.	25
GUCY2D	3000	hgsc.bcm.edu	37	17	7917239	7917239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	GUCY2D_ENST00000254854,NS,haematopoietic_neoplasm,0,1	GUCY2D_ENST00000254854	NM_000180	exon12	c.C2305A	p.P769T	TGTCGGCCCTTGG	.	22	2	38	0	.	0
EXOSC4	54512	hgsc.bcm.edu	37	8	145133719	145133719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	EXOSC4,colon,carcinoma,0,1	EXOSC4	NM_019037	exon1	c.G88T	p.G30C	CGGATGGGCGTGT	.	17	3	22	0	.	0
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	54040674	54040674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_006258	exon13	c.G1529A	p.R510Q	ATCACCGAGGTTA	.	56	5	90	0	.	.
PER1	5187	hgsc.bcm.edu	37	17	8046029	8046029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	PER1,NS,carcinoma,0,1	PER1	NM_002616	exon20	c.G3197A	p.G1066D	CCCAAGCCAGAGC	.	68	3	135	0	.	0
TRPM8	79054	hgsc.bcm.edu	37	2	234869591	234869591	+	Missense_Mutation	SNP	G	G	T	rs200884995	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	TRPM8,colon,carcinoma,0,1	TRPM8	NM_024080	exon12	c.G1534T	p.A512S	CAGATCGCCAAGA	.	56	3	90	0	.	0
OTOP1	133060	hgsc.bcm.edu	37	4	4199570	4199570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OTOP1,trunk,malignant_melanoma,0,1	OTOP1	NM_177998	exon5	c.G991A	p.V331I	GGTATACCACCAC	.	33	2	54	2	.	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54305275	54305275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001080534	exon1	c.T175A	p.F59I	TACACTTTTAAAA	.	114	38	178	0	.	.
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1427411	1427411	+	Silent	SNP	C	C	T	rs369348874	bycluster	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_014461	exon20	c.C2634T	p.S878S	TGCTTCCGTAAGA	.	56	6	132	0	.	.
GAD1	2571	hgsc.bcm.edu	37	2	171702544	171702544	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	GAD1,bladder,carcinoma,0,1	GAD1	NM_000817	exon10	c.G973T	p.E325X	GATTTTGAGGCAA	.	72	4	110	0	.	0
MAP10	54627	hgsc.bcm.edu;bcgsc.ca	37	1	232941560	232941560	+	Missense_Mutation	SNP	C	C	A	rs3766498	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_019090	exon1	c.C791A	p.P264H	TGCCCCCTGGGCG	.	26	7	19	0	.	.
NOL9	79707	hgsc.bcm.edu	37	1	6610487	6610487	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	NOL9,NS,carcinoma,0,1	NOL9	NM_024654	exon2	c.C585A	p.A195A	ATTCCGGGCTTCC	.	35	2	101	0	.	0
LRRC49	54839	hgsc.bcm.edu	37	15	71341747	71341747	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	LRRC49,NS,carcinoma,0,1	LRRC49	NM_001199017	exon16	c.1873-1G>T	.	TTAACAGGAAATA	.	48	2	105	0	.	0
CDH9	1007	hgsc.bcm.edu	37	5	26885928	26885928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	CDH9,NS,carcinoma,-2,1	CDH9	NM_016279	exon11	c.C1677A	p.N559K	CATTTTGTTGCGA	.	66	3	111	0	.	-2
DCBLD1	285761	hgsc.bcm.edu	37	6	117861861	117861861	+	Missense_Mutation	SNP	C	C	T	rs150272298	alternate_allele	TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173674	exon10	c.C1132T	p.P378S	CGGGACCCAGTGC	.	97	4	130	0	.	.
EIF4G2	1982	hgsc.bcm.edu	37	11	10822519	10822519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001172705	exon15	c.C1529A	p.P510H	CCCAGAGGTGGTG	.	76	4	101	0	.	.
FREM3	166752	hgsc.bcm.edu	37	4	144619386	144619386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	FREM3,colon,carcinoma,0,1	FREM3	NM_001168235	exon1	c.C2443T	p.P815S	TGCCTGGCACGCT	.	64	3	107	0	.	0
DPH2	1802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44437356	44437356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_001384	exon4	c.G782T	p.G261V	ATGAGGGTGCCCG	.	20	6	33	0	.	.
BEST2	54831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12865559	12865559	+	Silent	SNP	G	G	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_017682	exon3	c.G441C	p.V147V	CGCGGTGTTCAAG	.	58	21	66	0	.	.
PHLPP1	23239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	60562326	60562326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_194449	exon5	c.G2149C	p.A717P	ACCCTGGCAGAGC	.	38	24	124	0	.	.
NYAP2	57624	hgsc.bcm.edu	37	2	226378131	226378131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	KIAA1486,rectum,carcinoma,0,1	KIAA1486	NM_020864	exon3	c.G266A	p.G89D	ACGTGGGCAAACA	.	27	2	40	0	.	0
BTRC	8945	hgsc.bcm.edu	37	10	103281468	103281468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	BTRC,NS,carcinoma,0,1	BTRC	NM_033637	exon5	c.G397A	p.E133K	GAAAAGGAAAAGG	.	36	2	122	0	.	0
SLC20A2	6575	hgsc.bcm.edu	37	8	42287686	42287686	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	SLC20A2,NS,carcinoma,0,1	SLC20A2	NM_001257181	exon9	c.G1605A	p.W535X	CAGCAGCCAGACG	.	69	3	123	0	.	0
NPAP1	23742	hgsc.bcm.edu	37	15	24924482	24924482	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	C15orf2,NS,carcinoma,0,1	C15orf2	NM_018958	exon1	c.G3468A	p.P1156P	ACTTCCGTAAGAG	.	44	2	58	0	.	0
PNLDC1	154197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160240039	160240039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_173516	exon17	c.G1286T	p.R429M	TCAAAAGGTGGCC	.	22	9	50	0	.	.
ZNF253	56242	hgsc.bcm.edu	37	19	20002885	20002885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ZNF492,NS,carcinoma,0,4	ZNF492	NM_021047	exon4	c.G829T	p.V277F	AAGATAGTTCATA	.	45	2	64	0	.	0
KLHL29	114818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	23862089	23862089	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	NM_052920	exon4	c.G366A	p.Q122Q	CAATCAGTCCACA	.	26	11	57	0	.	.
KIF1B	23095	broad.mit.edu	37	1	10331564	10331564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	KIF1B	NM_183416	exon8	c.G725T	p.S242I	AGGTCAGTAAAAT	.	65	3	155	0	.	242
ST3GAL3	6487	broad.mit.edu	37	1	44303969	44303969	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	ST3GAL3,NS,carcinoma,+1,1	ST3GAL3	NM_174963	exon6	c.G495T	p.T165T	GATGACGGCCATC	.	60	3	55	0	.	56
CUZD1	50624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124594545	124594545	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	CUZD1	NM_022034	exon7	c.C1059T	p.I353I	ACGGGTGATCACT	.	60	24	89	0	.	82
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129913724	129913724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MKI67	NM_002417	exon7	c.C948A	p.N316K	CCCCTTGTTCTGG	.	41	20	61	1	.	363
PRKCQ	5588	broad.mit.edu	37	10	6527117	6527117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PRKCQ	NM_006257	exon10	c.A1015G	p.R339G	TACCTCTTTTTCC	.	62	3	113	0	.	113
FOXRED1	55572	broad.mit.edu	37	11	126139308	126139308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	FOXRED1	.	.	.	.	GGGAAGGGGGTTA	.	8	4	19	0	.	38
KCNJ5	3762	broad.mit.edu	37	11	128781861	128781861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	KCNJ5	NM_000890	exon2	c.G693T	p.E231D	CGTGGAGGCCTCC	.	37	4	48	2	.	560
MUC5B	727897	broad.mit.edu;bcgsc.ca	37	11	1269861	1269861	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MUC5B	NM_002458	exon31	c.A11751G	p.T3917T	CCCCACAGTGCTG	.	124	48	186	0	.	473
OR5L2	26338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55595251	55595251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	OR5L2,NS,carcinoma,+1,1	OR5L2	NM_001004739	exon1	c.G557A	p.S186N	TCCTAAGTCTTGC	.	36	15	86	0	.	135
RPS3	6188	broad.mit.edu;bcgsc.ca	37	11	75113481	75113481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	RPS3	NM_001260506	exon4	c.C389T	p.A130V	GGCTTGCTGTGCG	.	36	4	62	0	.	20
TRIM68	55128	broad.mit.edu	37	11	4626749	4626749	+	Translation_Start_Site	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRIM68	.	.	.	.	CTCACACCCTCCT	.	11	4	16	0	.	53
FAM138D	0	broad.mit.edu	37	12	147969	147969	+	RNA	DEL	T	T	-	rs112827715		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	TGGAAGTTTATTT	.	12	3	12	0	T|0.500;-|0.500	.
.	319089	broad.mit.edu	37	14	38310791	38310791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	TGTCCCTTTTGGG	.	128	3	200	0	.	.
SHF	90525	broad.mit.edu	37	15	45479775	45479775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	SHF	.	.	.	.	GGGTCCGGGGGCG	.	5	1	4	0	.	27
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20843488	20843488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	LOC81691	NM_030941	exon12	c.T1169C	p.L390P	CAGAACTAAATCT	.	75	9	144	0	.	41
.	64319	broad.mit.edu	37	16	30671270	30671270	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	CCATCGCCAGCTT	.	6	1	8	0	.	.
ANKRD36	375248	broad.mit.edu;bcgsc.ca	37	2	97911242	97911242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	ANKRD36	NM_001164315	exon71	c.G4918C	p.D1640H	CGATGTGATCATG	.	247	38	286	0	.	170
CD93	22918	broad.mit.edu	37	20	23066789	23066791	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	CD93	NM_012072	exon1	c.39_41del	p.13_14del	GTCAGGAGCAGCA	.	5	2	8	0	.	84
UFD1L	7353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19455397	19455397	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	UFD1L	NM_001035247	exon5	c.G421A	p.V141I	GATACACGGCTTT	.	61	21	100	0	.	25
PCLO	27445	broad.mit.edu	37	7	82545128	82545128	+	Silent	SNP	T	T	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PCLO	NM_014510	exon7	c.A12174C	p.G4058G	CGCTGTTCCTTTG	.	33	3	57	0	.	1506
NOTCH1	4851	broad.mit.edu	37	9	139399225	139399225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	NOTCH1,NS,lymphoid_neoplasm,0,1	NOTCH1	NM_017617	exon26	c.G4918A	p.A1640T	CAGGTGCGGCCCA	.	26	3	53	0	.	1980
MIR450B	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	133674225	133674225	+	RNA	SNP	A	A	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	AAAACTATGGATG	.	109	36	121	1	.	.
TRAFD1	10906	ucsc.edu;bcgsc.ca	37	12	112583461	112583461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRAFD1	NM_001143906	exon7	c.C922T	p.H308Y	ATTGACCATCAGG	.	41	4	88	1	.	42
MSN	4478	ucsc.edu;bcgsc.ca	37	X	64949502	64949502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	MSN	NM_002444	exon4	c.C395A	p.S132Y	TCCAGTCTAAGTA	.	28	4	67	0	.	89
UBE4B	10277	bcgsc.ca	37	1	10192481	10192481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	UBE4B	NM_001105562	exon15	c.G1966T	p.A656S	CGTGAGGCTGCTC	.	53	4	132	0	.	233
PGD	5226	bcgsc.ca	37	1	10471520	10471520	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	PGD	NM_002631	exon7	c.G565T	p.G189W	CACAACGGGATAG	.	26	3	67	0	.	39
QARS	5859	bcgsc.ca	37	3	49137444	49137444	+	Silent	SNP	A	G	G	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	QARS	NM_005051	exon14	c.T1245C	p.P415P	GGCTACAGGGTCC	.	17	3	48	0	.	55
TRIM42	287015	bcgsc.ca	37	3	140407354	140407354	+	Silent	SNP	C	T	T	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	TRIM42	NM_152616	exon3	c.C1830T	p.Y610Y	TATCTACCAGACT	.	32	3	49	0	.	143
SPEF2	79925	bcgsc.ca	37	5	35789374	35789374	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	SPEF2	.	.	.	.	AATGTCCTTAGCA	.	48	4	91	0	.	324
LOC642236	0	bcgsc.ca	37	9	68437765	68437765	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GACTAGGGCCCTC	.	162	11	287	6	.	.
COG1	9382	bcgsc.ca	37	17	71192846	71192846	+	Silent	SNP	G	A	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	COG1	NM_018714	exon2	c.G516A	p.R172R	CTCCCGGTTTCCT	.	18	3	55	0	.	46
MLLT10P1	140678	bcgsc.ca	37	20	29637962	29637962	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y1-01A-11D-A417-09	TCGA-ZH-A8Y1-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4732670-b6da-4653-a356-486d91842583	c8778726-9a87-4c5a-beb9-607a1fdee593	.	.	.	.	.	.	GTATGTGCAGAGA	.	192	8	295	3	.	.